Zobellella denitrificans: AN401_12230
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Entry
AN401_12230 CDS
T05100
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
zdf
Zobellella denitrificans
Pathway
zdf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AN401_12230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zdf03400
]
AN401_12230
Enzymes [BR:
zdf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AN401_12230
DNA repair and recombination proteins [BR:
zdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AN401_12230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ATG74524
UniProt:
A0A291HQW6
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All DBs
Position
2606824..2610264
Genome browser
AA seq
1146 aa
AA seq
DB search
MIQIPSPTPRPRASLGGLIGSSLSLAIAGQVRQQAQLVLLVVPDTPTALRLEQEVSHLLA
DDPALPVHLFPDWETLPYDSFSPHQDILSQRLETLYGLPALKRGLLIVPVTTLMLRTPPR
AWLEQNSLLLKTGDRLNLHALRRRLEQAGYRAVDQVLEHGEFAARGALLDLFPMGAEEPY
RIDFFDDEIDTLRPFDPDTQRSKDKVEQIRLLPAREFPTDAAAIERFRGQYRERFALRNE
PEALYHRVSQGQFPPGIEYYFPLFFEQTQTLFDSLPDPLLVLGLGELLEAAETFWQEVAG
RYEDRRHDPLRPLLAPEELYLRPDELLHRLNHWPRLQLSQTPVLEKGDRTNAPVAPLPPL
EVEHQKTEPLARLLGFCEQFPGRVLFSVESAGRREALLELLAGSPLKPWPVESLGRFAAG
DERLGLLVSPLSQGFVLNDDFALVCEGDLLGGRVIQRRRREKSTALSPDTLIRNLAELSI
GQPVVHLDHGVGRYTGLQTLEAGGLKSEYLTLEYAGGDKLYVPVTALHLVGRYSGADDPS
LNKLGNDAWAKAKRKAAEKVRDVAAELLDVYARRAAKPGQAVTHDKSAYRQFCDAFPFEE
TDDQLRAINAVLTDMTQPKAMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVLVPTTLL
AQQHYDNFRDRFANWPVRVEMISRFKTGKEQDKALTGLADGSIDIVIGTHKLLSQEVKFK
DLGLLIVDEEHRFGVRQKDQIKALRADVDILTLTATPIPRTLNMAMGGMRDLSIIATPPA
KRLAVKTFVREHDPALVREAVLRELKRGGQVYYLHNEVQTIENSADALRALVPEARIGIA
HGQMRERELERVMSDFYHQRFNLLLCSTIIETGIDVPSANTIIMDRADKLGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKRMTTDAKKRLEAIAALEDLGAGFALATHDLEIRGAGELLGE
EQSGQITAIGFSLYMEMLEQAVKALQSGKEPALDQLLRAQTEIELRLPALLPDDYIPDVN
MRLSMYKRIAAAEDDAALRELQVELIDRFGLLPEPGKNLVALAGLKLRASRLGIEKIDAG
PQGGTLAFGQDAKVDPGYLVGLLQSQPRIYKMEGPTRLRFAIPSQDAKARLALVGDMLKE
LEAHRI
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgatacagatccccagccccactccccgccccagggccagcctgggcgggcttatcggc
agcagcctgtcgctcgccatcgccgggcaggtgcgccagcaggcccaactggtgctgctg
gtggtgcccgacacccccaccgccctgcgcctggagcaggaagtgagccacctgctggcc
gacgacccggccctgccggtgcacctgttcccggactgggaaaccctgccctacgacagt
ttttcgccgcaccaggacatcctctcccagcggctggaaaccctgtacggcctgccggcc
ctaaagcggggcctgctgatcgtgccggtgaccaccctgatgctgcgcaccccgccccgg
gcctggctggagcagaacagcctgctgctgaaaaccggcgaccggctcaacctgcacgcc
ctgcgccggcggctggagcaggccggctaccgggcggtggaccaggtgctggagcacggc
gagttcgccgcccgcggcgccctgctggatctctttcccatgggggcggaagagccctac
cgcatcgactttttcgacgacgaaatcgacaccctgcgccccttcgatccggacacccaa
cgctccaaagacaaggtggagcagatccggttgctgccggcgcgggaatttcccaccgac
gccgccgccatcgagcgctttcgcggccagtaccgggagcgctttgccctgcgcaacgaa
cccgaggcgctctaccacagggtaagccagggccagtttccgcccggtatcgaatattac
tttccgctgtttttcgagcagacccagaccctgttcgactccctgcccgaccccttgctg
gtgctgggcctgggcgagctgctcgaggccgccgagaccttctggcaggaggtggcgggg
cgctacgaagaccgccgccacgacccgctgcgcccgctgctcgcccccgaggagctctac
ctcaggcccgacgaactgctgcaccggctcaaccactggccccggctgcaactgagccag
accccggtgctggaaaagggcgaccggaccaacgccccggtggcacccctgccgccgctg
gaggtggagcaccagaaaaccgagcccctggcccggctgctgggcttttgcgaacaattc
cccggccgcgtgctgttctcggtggaaagcgctggccggcgcgaggccctgctggagttg
ctggcgggcagcccgctcaagccctggccggtagagagcctgggccgctttgcggccggc
gacgagcgcctcggcctgctggtaagccccctgtcccagggttttgtgctgaatgatgac
ttcgccctggtgtgcgagggcgacctgctcggcggccgggtgatccagcgccggcggcgg
gaaaagtccacggccctgagcccggatacgcttatccgcaacctggcggagctgtccatc
ggccagccggtggtgcacctggatcacggcgtgggccgctacacggggctgcagaccctg
gaggcgggcgggctcaagtccgaatacctcaccctggaatacgccggcggcgacaagctc
tatgtgccggtgaccgccctgcacctggtgggccgctacagcggcgccgacgatcccagc
ctcaacaagctgggcaacgacgcctgggccaaggccaagcgcaaggcggcggaaaaggtg
cgcgacgtggccgccgagctgctcgacgtgtacgcccgccgggccgccaagccgggccag
gccgtgacccacgacaagagcgcctaccgccagttctgcgacgccttccccttcgaggaa
accgacgaccagctcagggccatcaacgccgtgctgaccgacatgacccagcccaaggcg
atggaccggctggtgtgcggcgacgtgggctttggcaagaccgaggtggccatgcgcgcc
gcctttgtggcggtgcacggcggcaagcaggtggcggtgctggtgcccaccaccctgctg
gcccagcaacactacgacaacttccgcgaccgcttcgccaactggccggtgcgggtggag
atgatcagccgcttcaagaccggcaaggagcaggacaaggcgctcaccggcctggccgac
ggcagcatcgacattgtgatcggcacccacaagctgctgagccaggaggtgaagttcaag
gatctgggcctgcttatcgtggacgaggagcaccgcttcggggtgcggcagaaggatcag
atcaaggcgctgcgcgccgacgtggacatccttaccctgaccgccacccccattccccgc
accctcaacatggccatgggcggcatgcgcgatctgtccatcatcgccaccccgcccgcc
aagcggctggcggtgaagacctttgtgcgcgagcacgatccggccctggtgcgcgaggcc
gtgctgcgggagcttaagcgcggcggccaggtgtactacctgcacaacgaggtgcagacc
atagagaacagcgccgacgccctgcgcgccctggtgcccgaggcgcgcatcggcatcgcc
cacggccagatgcgcgagcgcgagctggagcgggtgatgtccgacttttaccaccagcgc
ttcaacctgctgctgtgctccaccatcatcgaaaccggcatcgacgtgccgagcgccaac
accatcatcatggaccgcgccgacaagctgggcctggcccagttgcaccagttgcgcggc
cgggtgggccgctcccaccaccaggcctacgcctatttgctcaccccccatcccaagcgg
atgaccaccgacgccaagaagcggctggaggccattgccgcgctggaggatttgggcgcg
ggctttgccctggccacccacgacctggagatccgcggcgccggcgagctgctgggcgag
gagcagagcggccagatcaccgccatcggcttcagcctttatatggagatgctggagcag
gcggtgaaggcgctgcagtccggcaaggagccggccctggatcagctgctgcgcgcccag
accgaaatagagctgcgcctgcccgccctgctgccggacgactacattccggacgtgaac
atgcgcctgtccatgtacaagcgcatcgccgccgccgaggacgacgccgccctgcgcgag
ctgcaggtggagctgattgaccgcttcggcctgctgccggagccgggcaagaacctggtg
gccctggccgggctcaagctcagggccagccggctcggcatagagaaaatcgacgccggc
ccccagggcggcaccctcgcctttggccaggatgcgaaagtcgaccccggctacctggtg
ggcctgctgcaaagccagccgcgcatctacaagatggaaggcccgaccaggctgcgcttt
gccattccaagccaggacgccaaggcccggctggccctggtgggcgacatgctgaaggag
ctggaggctcaccggatttga
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