Zobellia galactanivorans: ZOBELLIA_331
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Entry
ZOBELLIA_331 CDS
T01586
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
zga
Zobellia galactanivorans
Pathway
zga02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
zga00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ZOBELLIA_331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zga03021
]
ZOBELLIA_331
Transcription machinery [BR:
zga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ZOBELLIA_331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
GerE
Sigma70_r4
HTH_11
HTH_23
HTH_Tnp_ISL3
TnsD
HTH_38
HTH_40
HTH_7
HTH_28
HTH_10
DUF2089
Terminase_5
HTH_29
Spo0A_C
IF2_N
Motif
Other DBs
NCBI-ProteinID:
CAZ94404
UniProt:
G0L0S2
LinkDB
All DBs
Position
complement(422690..423346)
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AA seq
218 aa
AA seq
DB search
MPATRSLPTEQLEAVPTDAPDRLLVGKVKLGCALSYAKLFELYGDKLYYFALGYIKSPIE
AEGVVQDVFVKVWEKRESLKLECSFKSYIFTIAFNLVKKVFNKRKRLRKYIDSKEIIHGF
DFSTEHQIEYNFMMEWLNNLVGEMPERRRETFIQSRFNGLPVKEIAKEMNVSPKTVENQI
TAALKFIKAHWDIDVVSKRYKAKPKVKLAQIEAAELSC
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
atgccagcaacccgatcccttccgacagaacaattagaggctgtacctacagatgctccg
gatcgcttattggtagggaaggtaaagttggggtgtgccctgtcttatgccaagctcttt
gagctttacggcgacaaactttattatttcgccttggggtatataaaatcgccaatcgag
gcagagggtgtggtacaagacgtttttgtaaaggtttgggagaagcgcgaatcgttaaaa
ttggaatgctcctttaagtcttacatttttacaattgcctttaatttggtaaaaaaggtc
ttcaataagaggaagcgtttgcgtaagtatattgattcaaaggaaattatacatgggttt
gatttttctacggagcatcaaatcgaatataattttatgatggaatggttgaataaccta
gtgggcgaaatgccggaacggagaagggaaacctttatccagagtcggttcaatggtctt
cccgtaaaagaaatcgccaaggagatgaacgttagtcccaaaaccgtagagaaccaaata
acggcggccttaaaatttatcaaggcgcattgggatatcgatgtggtgtctaaacggtac
aaggccaagccgaaggtcaagttggcccaaatcgaagcggcagaattaagttgctag
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