Ziziphus jujuba (Chinese jujube): 107413866
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Entry
107413866 CDS
T04794
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107413866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zju03041
]
107413866
Enzymes [BR:
zju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107413866
Spliceosome [BR:
zju03041
]
Complex A
U2 snRNP components
U2 related factors
107413866
Complex B
107413866
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
107413866
NCBI-ProteinID:
XP_024927829
UniProt:
A0A6P6G244
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All DBs
Position
8:20483000..20486413
Genome browser
AA seq
1137 aa
AA seq
DB search
MVKGEVEEGKHKSRREESDDSRSRRRDKDRNGERHRDRDKRDRDSRRSERERSSDSDERH
ERDREKERHKDRTHSRDDERERSRGKKRDRDRDRDREDRERDKEKRERTREKEREREKER
ERDKEKREDRERERKERERERERRIREREKRREVDSDDSNDGIREREKKRRRRDDDDYKE
REREHSSSRPSRHKDDSDDSPRKRSIEDGLDNKEKQPNHEEELEDEQRRLDEEMEKRRRR
VQEWQELRRKKEEAERQKHGEPDANELKSGKTWTLEGESDDEEVPLTTDKPETGMEIDVE
ANNNDKEVRDAMAVDSENRSAPSSLQNGDASADGDEEIDPLDAFMNSMVLPEVEKLNNAV
DPLIIVDGTSGSKDKDNMVDKSHTGQPRKVSNKSMGRIIPGEDSDSDYGDHENEDDAVED
EDDDEFMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVREISRMTSEEVAAYRKQLELK
IHGKDVPKPVKSWHQTGLTSKILETIKKLNYEKPMPIQAQAVPIIMSGRDCIGVAKTGSG
KTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFSKVLGLRCVPVYG
GSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEP
QITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRP
ENERFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLRHGYPCLSLHGAKDQTDREST
ISDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGYAIT
FISEEDARYAPDLVKALELSDQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNE
EEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQQAALAQIAAIAAASKSST
PSLPTPISAAQLLPNGGLPASLPGVLGLTIPGTAAVVPGSGLPVLPNDGAARAAAIAAAM
NLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFP
PGKITGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDITNQALSLPGGTQPGKYSVF
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagggggaagtggaagagggaaaacataagtcaaggagagaagaatccgatgat
tcaaggagtcgtcgtcgggataaggacaggaatggagagcggcacagggatagggataag
agggaccgtgatagtcggcgttctgagagagaaaggagttctgattctgatgagaggcat
gaaagagatagggagaaggagaggcataaagataggacacacagtcgggatgatgaaaga
gaaagaagtagaggcaagaaaagggatagagatagggatagagatagagaagatagggaa
agggacaaggagaagagggaacggacaagggagaaagaaagggagagggaaaaagaaaga
gaaagagacaaagagaaaagggaagatcgagaaagagagcggaaggagcgggagagagaa
agagagaggaggattcgtgaaagagagaagcggcgggaagttgatagtgatgatagcaat
gatggtatcagggaacgggagaagaagcgacgtaggagagatgatgatgactacaaggag
agagagcgtgaacacagcagcagcaggcccagcaggcataaggatgacagtgacgatagt
cccaggaagaggagtattgaggatggtttggataacaaagagaagcagccaaaccatgag
gaggagttagaggatgaacagcgtaggttggacgaagaaatggaaaagcggaggaggaga
gtacaggagtggcaagagttgaggagaaagaaagaagaagctgaaagacagaagcatggg
gaaccggatgctaatgaactcaagtctggtaaaacgtggacccttgaaggtgaatctgat
gatgaagaagtacccttgactactgacaaaccagagacaggaatggaaattgatgtggaa
gccaataataatgataaagaagtaagagatgcaatggccgtagattcagagaatagaagt
gctccatcttcactgcagaatggagacgcttctgctgatggggatgaggaaattgatcca
ttagatgcttttatgaattctatggttttacctgaagttgagaaacttaataatgctgtg
gaccctttgattattgttgatggtacttcagggtcaaaggacaaggataatatggttgat
aaaagtcatactggacaaccaaggaaagtttcaaataaatctatgggacgaataattcct
ggggaggattctgattcagattatggggaccacgagaatgaagatgatgctgtagaagat
gaagatgatgatgaattcatgaaaagagttaagaagacaaaagctgagaagctttcaata
gttgatcactcaaagattgattataaaccatttaggaaaaatttctatatcgaagtaagg
gagatatcaagaatgacttcagaagaggttgctgcataccgtaaacaattggaattgaag
atacatggtaaggatgtgccaaagccagttaaatcctggcaccaaactggacttacgagc
aaaattttggagacaataaagaagcttaactatgaaaagccaatgccaattcaagcccaa
gcagtacccataattatgagcggtcgagattgcattggtgttgcaaaaactggctcaggc
aaaacccttgcatttgtgctgccaatgctgaggcatatcaaggaccagccacctgtagtt
gctggagatggacctattgggcttataatggcacctacaagggagcttgtccagcagatt
cacagtgatataaagaagttttccaaggtcttgggtcttaggtgtgtgcctgtatatggt
ggttccggtgttgcccaacagattagtgaactgaagcggggtgctgaaattgttgtctgt
actccaggcaggatgattgatatactttgcacaagtggtgggaaaattactaatctacga
cgggtcacttacttggtcatggatgaagctgatcggatgtttgacatgggttttgaaccg
caaatcaccagaattgttcaaaatattcgccctgatcgacaaactgttctcttttctgcc
actttccctcgtcaagttgaaatcttggctcgtaaggtgttaaacaaacctgtggaaata
caggttggtgggaggagtgttgtgaataaggacatagcacagctggttgaagtgaggcca
gaaaatgaaaggttcttaagattgttagaactgcttggggaatggtacgagaaagggaaa
attttgatatttgtccattcacaggaaaaatgcgatgctttgttcagggatctactcagg
catggttacccatgcctttcacttcatggtgctaaggatcaaacagatcgtgagtcgact
atttctgattttaaaagtaatgtctgtaatttgttaattgcaacaagtattgctgccaga
ggtttagatgtcaaggagcttgaactggtgatcaatttcgatgttccaaatcactatgag
gattatgttcaccgtgttggtcggacaggccgagctggccgtaaagggtatgctataaca
tttatctctgaagaagatgctagatatgctccagatctagtgaaagcattagaactctct
gaccaagttgttcctgatgacctaaaagctcttgctgatagtttcatggcaaaagtgaac
caaggacttgagcaagctcatgggactggttatggtggaagtggttttaagtttaatgaa
gaggaagatgaagtgaggagagcagctaagaaagcacaggccaaagaatatggatttgag
gaagacaagtcagattctgaagatgaagatgaaggtatccggaaagcggggggtgacatc
tcacagcaagctgcccttgctcagatagctgccattgctgctgcctccaaatcaagtaca
ccatcactgccaactcctatatctgctgcccaactgcttccaaatggcggactacctgca
tcactgccaggtgtccttggtctaacaataccaggaactgctgctgttgtgcctggaagt
gggctgcctgttcttcccaacgatggggcagcccgggcagcagcaattgcagctgccatg
aacttgcagcataatctggcaaagattcaagctgatgcaatgcctgaacactatgaagca
gagcttgagataaacgattttccccaaaatgctcgatggaaagtcacccacaaggaaact
ttgggtcctatatcagagtggactggggctgccattactaccagggggcagtatttccca
ccaggcaaaatcactggaccaggagaacgcaaactctacttgttcattgagggccctacg
gaacagtcggtgaagagagcaaaagcagaattaaaacgtgtattggaagacatcacaaac
caggccttgtcacttcctggtggaacgcagccagggaaatactcagttttttaa
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