Ziziphus jujuba (Chinese jujube): 107414861
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Entry
107414861 CDS
T04794
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju04120
Ubiquitin mediated proteolysis
zju04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107414861
04120 Ubiquitin mediated proteolysis
107414861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zju04121
]
107414861
Enzymes [BR:
zju01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107414861
Ubiquitin system [BR:
zju04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107414861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
FlxA
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
107414861
NCBI-ProteinID:
XP_015878551
UniProt:
A0A6P3ZY89
LinkDB
All DBs
Position
8:complement(join(30039557..30039691,30040190..30040454,30040913..30041066,30041506..30041711,30041810..30041959,30042107..30042283,30042585..30043117))
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AA seq
539 aa
AA seq
DB search
MMRLQTYAGLSFLGTLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNIGLVIMCILWQL
TKRIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVSFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFLGFLLALDSLFLYTSVNDLIQSRKPSVSLFFSFEYM
ILATTTVSTFVKYVFYVSDMLMEGQWEKKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYG
VPLHLIRELYETFRNFKIRVADYVRYRKITSNMNDRFPEATPEELDASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTSTAGGQNGSRSDSHQGTGIS
GTSGQGSVGGVASDNVSLHQARLQAAAAAASIYEKSYVYPSANTLVWSPGYAVLPQTQIP
LANSASNESGGQSQRQFVPPGGPANLSTPQFPQYILVPFQASKTNLTDEEKLNSDPKVSD
TQMDAQRQLLQHQIEVLQNQLQLLQRSKTEQSREIDPTKSLDNKEKGIASSSSNASDSG
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcaaacgtatgcggggttgagctttcttggaactttagctgttatctat
catgcatttaacagtagaggccagttttacccagccatggtttatttgtccacctccaag
atcagtttggtgcttcttctcaatataggtcttgtgattatgtgtattttgtggcaatta
accaaacggatatttcttgggtcccttcgagaagcggaggttgagaggcttaatgagcaa
tcatggagggaagtcatggaaattctctttgcaatcacaattttccggcaggacttttcg
gtttcgtttcttgccatggttacggctctgttgctgatcaaggcgttgcattggttggct
cagaagagagtagagtacattgagaccactccatcagtgccaatgctgtctcatattcgt
attgtttctttcttggggtttctccttgcactcgatagtctctttttgtacacttcagta
aatgatttgatacagtcgcggaagccttcagtttcactcttcttttcgtttgagtacatg
atacttgcgacgaccacagtatctacatttgtcaaatatgttttctatgttagtgatatg
cttatggagggacaatgggagaagaaacctgtctatacattctatttggaactcatacgg
gacttgcttcacttatctatgtatctctgcttctttcttgtaattttcatgacatatggt
gtgcctttacacttgatacgtgagctctatgagacctttaggaactttaagattcgtgtt
gctgattacgttcgttaccggaagatcacttcaaacatgaatgatcgatttccagaagca
acacctgaagagcttgatgcaagtgatgcaacctgcattatttgtcgtgaagagatgacc
acagccaagaaactaatctgcggacatcttttccatgtgcattgcttacggtcctggtta
gaacgacaacatacctgtccaacttgcagagccctagttgtacctcctgaaaatgggaca
agtacagctggaggacaaaatggatcacgatcagattcacatcaagggacaggcatctca
ggtacatctggtcagggttcagttggtggtgtggcaagtgataatgtgagccttcatcag
gccaggcttcaagctgctgctgcagctgcctcaatatatgagaaatcttatgtttatcct
tctgcaaacaccttggtgtggtcccctggttatgctgtacttcctcagactcaaatacct
ttggccaactctgccagtaatgaatctggtggacaatcacaacgacagtttgtaccccct
ggtggacctgcaaacttatccacacctcaatttccacaatacattttggttccttttcag
gcatccaagactaatttgactgacgaagagaagttgaacagtgatccaaaagtatcagat
actcagatggatgctcaaagacagctacttcaacaccagattgaggtcctgcaaaatcag
ctccaacttttacaaaggtctaaaacggagcaaagcagggaaatagatcctacaaaatca
ttagacaacaaagaaaagggcattgcatcttcatcatcaaatgcttcggactctggatag
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