KEGG   Ziziphus jujuba (Chinese jujube): 107419652
Entry
107419652         CDS       T04794                                 
Name
(RefSeq) DNA ligase 4 isoform X1
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    107419652
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:zju03400]
    107419652
Enzymes [BR:zju01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107419652
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     107419652
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT DNA_ligase_A_C PTCB-BRCT RNA_ligase DNA_ligase_IV
Other DBs
NCBI-GeneID: 107419652
NCBI-ProteinID: XP_048333732
LinkDB
Position
1:complement(join(1947567..1947600,1948019..1948750,1949291..1949440,1949617..1949778,1949879..1950009,1950118..1950223,1950354..1950453,1950570..1950695,1951106..1951309,1951512..1951599,1951712..1951760,1951856..1951951,1952352..1952435,1952854..1952912,1953001..1953035,1953120..1953244,1953629..1953704,1953786..1953941,1954255..1954261,1954353..1954390,1956068..1956147,1956522..1956593,1956889..1956980,1957238..1957312,1958336..1958472,1958568..1958653,1959671..1959762,1959917..1960261))
AA seq 1178 aa
MAVEEEEETKFSVLCSLFNWMLRSKSAAKKRSKFRKFLDNFCKPSDYFSSIRLILPGLDR
ERGSYGLRESVLATSLIDALGMSRDSDDALRLINWRKGGAKTGAYAGNFALVAAEVLQRR
QGMTSGGLTIKELNELLDRLASSENRAEKITVLSTLIKKTNAQEMKWIIMIILKDLKLGI
SEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRNRSQRHKRQDIEVGKAVRPQLAMRVGDAT
VAWKKLHGKEVVIECKFDGDRIQIHKNGNEICYFSRNFLEHSEYGHAMSDIIIQNVMADR
CILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGFDSDRQLCYVAFDILYVGDTSVIHQSL
KERHELLQRTVKPLKGRLEILVPNGGINNHRNSGEPCWSLIANNVDDVERFFKETIENRD
EGIVLKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGL
AERPAPNTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYDYPKRAPPSFYHVTNNSK
ERPDVWIDNPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFI
ELVHSSNGTTQRGTDYGGLQDNKLKRRKSSTKDEKRNLLAVPSHFVHTDISGIKEDTLIF
SNMMFYFINVPSTHSLDTLHKMVAENGGSFSMNLNNSVTHCIAAESKGIKYQAAKLRGDV
IHYSWVLDCCSKRSLLPLQPKYFLFLSDSSKKKLQEEIDEYSDSYYQDLDLADIKQLLSN
VETSEDTKAVDCYKLKYCPMEKWSRFHGCFIYFHASLQSLKPDWEVVLGLALRRLKIEVC
MGGGKVSDSLSHATHLVILSVPGFNLDVENVLRSLTTMEKHLQKKRLHMVESQWLEDCLE
REERLPEETYSLKPAVEELDIGECDHDVDLEIPSDMDFAERQELASFPNKEEQEIRGKNA
LKTHRILASGEPVSKRKRGRPAGTSTKKGKLGVNQAQRRRIHIQKRPAKISGNASDECGS
DDDHTFKEESKAREQNYGLIGKENLEIQEAKTVEDSESSRRGKATEQEDVRHEEWFNRVP
EIDMSEKCDNEDNKKPEKLEMMTDPVEAMLLDMIPSLGTKKIETANKSFEDGKPSADMNA
PSADLNVEPTKKKKVSYKDVAGELLKDCSLQIWMSKSY
NT seq 3537 nt   +upstreamnt  +downstreamnt
atggcggtggaggaggaggaggagacgaagttcagcgtgctgtgcagcctcttcaactgg
atgttgaggagcaaatcggcggcgaagaagcggtcgaaattccggaaattcctggacaac
ttctgcaaaccctccgactacttcagctcgatccgcctcatccttcccggccttgaccgc
gagcgaggttcgtatggcctcagggagtccgtactcgccacctctcttatcgacgccctc
ggcatgtctagggattccgacgatgctctccgcctcatcaattggcgcaaaggcggtgcc
aaaaccggtgcttacgctggcaattttgctcttgttgccgccgaggtgcttcagcgtcga
caaggaatgacttctggtggactaacaattaaggagcttaatgagttgcttgatcgtttg
gcttctagtgaaaatagggcagaaaagataacagttctttctactctaattaaaaagaca
aatgctcaggaaatgaagtggatcattatgatcattcttaaagatttgaagttggggatt
agtgaaaagagcatttttcatgaatttcatccagatgctgaagacttgtttaatgtcacc
tgtgacttaaaattggtctgtgaaaaattgaggaaccgcagtcagcggcacaaacgtcag
gatattgaagttggaaaggctgtgcgccctcaactagctatgagagttggtgatgcaact
gttgcatggaaaaagcttcatgggaaggaagtggttattgaatgcaaatttgatggggat
cgcattcaaattcataagaatggaaatgagatctgttacttttcaaggaattttcttgag
cactctgaatatggacatgcaatgtcagacattattatacaaaatgttatggctgatagg
tgtatacttgatggtgaaatgttggtttgggatacatctttgaatcgttttgctgagttt
ggttcaaatcaggaaatagccaaggcagcaagagatggattcgatagtgatcgacagttg
tgctatgttgcatttgatattctttatgttggagatactagtgttattcaccaaagcttg
aaggaaagacatgaacttctccaaagaactgtgaagcctttgaaggggcgtctggagatc
ttagtacccaatggtggtattaataatcatcgtaattctggggaaccttgttggtcactt
attgctaataatgtggacgatgttgaaaggttttttaaagaaaccattgaaaacagagat
gaaggaattgttttaaaggatcttggctccaaatgggaacccagtgaccggagtggaaag
tggttgaaattgaagcctgaatacatacgtgctggttccgatctggatgttcttataata
ggaggatattatggatctggacgacgtgggggggaggtagctcaatttttggtgggcctt
gctgagcgtcctgccccaaatacatatccaagacgttttatatctttttgcagagttgga
actggactttctgatgaggaactagatgctgtcgtaacaaagttaaagccttactttaga
aaatatgactatccaaaaagggccccaccaagtttttatcatgtgacaaataattccaag
gagaggccagatgtttggattgacaaccctgagaaatcaataatactttccattactagt
gacatccgaactataaggtctgaggtttttgctgcaccatacagccttagatttccacgt
attgaccgagtcagatatgacaaaccttggcatgaatgtcttgatgtgcaatcatttatt
gagcttgtacattcaagcaatggtaccacacagagagggacagattatggtggactgcaa
gataataaactaaaacgcaggaaatcctctacaaaggatgaaaaaaggaatctattggct
gttccttctcattttgttcatacagatatttctggcattaaggaggacaccttgattttt
tcaaatatgatgttctacttcattaatgttccttcgactcattcacttgataccttgcat
aaaatggttgctgagaatgggggctctttctccatgaatttgaataactctgtcactcac
tgtattgcagctgaaagcaaggggatcaaatatcaggcagcaaaactccgtggtgatgtt
attcattactcttgggttttggattgctgttctaaaagaagtctactgcctttgcagcca
aagtatttcctcttcttatccgactcttctaagaaaaagttacaagaagaaattgacgaa
tattctgactcatactaccaggatcttgaccttgcagacatcaaacagctgttaagcaat
gtggagacatcagaagataccaaggctgtggactgttacaagttaaaatactgtccgatg
gaaaagtggtctcgcttccatgggtgctttatttactttcatgcttcactacagtctttg
aaaccagattgggaagttgtgttaggacttgcactgaggagattaaagattgaagtttgc
atgggtggtggcaaagtcagtgacagtctttctcatgcaacccatttggtaatcttgtca
gttccaggatttaatttggatgttgaaaatgtactaagaagtttgaccacaatggagaaa
catcttcagaagaagcgattgcatatggttgaatctcagtggttggaagactgcttggaa
agggaagaaaggttgccagaagaaacatatagcttgaagcctgcagtggaagagctggac
attggggagtgtgaccacgacgttgatctggaaatcccttctgatatggactttgcggaa
agacaggaattggcttctttccctaataaagaagaacaagagataagaggcaaaaatgct
ctaaaaacccatagaatcttggcctcaggtgagcctgtttcaaagaggaaacgaggaaga
cctgctggcacaagcacaaagaaaggaaaacttggggtcaaccaagctcaaagaagacga
atacatattcaaaagaggcctgctaaaatatctggcaatgcatcggatgaatgtggttct
gatgatgatcatacatttaaagaagagagcaaagcaagggagcaaaattatggattgata
ggtaaagaaaatttggaaatccaagaagccaaaacggtagaagattctgagtcatcacgg
agaggcaaggcaactgaacaagaagatgttagacatgaagagtggtttaatagagttcct
gaaattgacatgtctgaaaagtgcgataatgaggacaataagaagcctgagaagctggaa
atgatgacagatccagttgaagccatgttgttggatatgattccaagcctaggaacgaag
aaaatcgaaactgcaaataaatcctttgaagatgggaagccatcagcggatatgaatgct
ccatcagcggatttgaatgtggagcctacgaagaaaaagaaagttagctacaaggatgtt
gctggtgaactgctcaaagattgttcccttcaaatatggatgtccaaaagttattaa

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