Ziziphus jujuba (Chinese jujube): 107420298
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Entry
107420298 CDS
T04794
Name
(RefSeq) S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zju03016
]
107420298
Enzymes [BR:
zju01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
107420298
Transfer RNA biogenesis [BR:
zju03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
107420298
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Flavodoxin_1
Wyosine_form
Radical_SAM
Motif
Other DBs
NCBI-GeneID:
107420298
NCBI-ProteinID:
XP_015884714
UniProt:
A0A6P3ZTQ3
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All DBs
Position
5:complement(join(8426435..8426575,8426650..8426860,8426958..8427115,8427835..8427921,8428080..8428270,8428510..8428685,8428800..8428915,8429253..8430116))
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AA seq
647 aa
AA seq
DB search
MPTMSFSSFPTRLTLLALLSATTFYCFYKSRRLKLLSQSLNPNGKTSSSSPRKAKLFFIS
QTGTSKALAVRLFDLLTSNNLAFDLVDPNHYEPEDLPKENLVLIVASTWEDGKAPPTAKF
FANWLSESSDDFRVGSLLLSQCKFAVFGVGSRAYGATFNAVAKDVSKQMRALGAKEILPV
WEGDVDGGDIDEVFDAWSGKVVGFCKGGVVENGGVSTNGVDCESDACSGDETDEEEYSME
SEIVDLEDIAGKGPSRRSATVTKAETNGTLNGKKDMVTPVIRASLEKQGYKIIGSHSGVK
ICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKM
DDPLEIVNSAIEQHTKMIKQMKGVPGVTVERLREGLSPRHCALSLVGEPIMYPEINTLVD
ELHRRRVSTFLVTNAQFPEKIKMLKPITQLYVSVDAATKESLKAIDRPLFGDFWERLIDS
LKALKEKQQRTVYRLTLVKGWNTEDIEAYSNLFSIGKPDFIEIKGVTYCGSSATSKLTME
NVPWHSDVRDFSEALALRSLGEYEVACEHVHSCCVLLAKTDKFKINGQWFTWIDYEKFHD
LVASGRPFDSKDYMAITPSWAVYGAEEGGFDPDQSRYKKERHHRSSK
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccatgtccttttcctccttcccaacgcgtctcacgctacttgccctcctctcc
gccactacgttctactgcttctacaaatctcgtcgcctcaagctcctcagccaatcccta
aaccctaacggtaaaactagctcttcctcccctcgcaaagctaagctcttcttcatttct
caaaccggaacatccaaagccctagctgttcgccttttcgatcttttaacctccaataat
ctcgcatttgacctcgtggacccaaaccactacgagccagaagacctccccaaggaaaac
ctagttctcattgtcgcttcgacctgggaagatggtaaagcgcctccaacggccaagttc
ttcgccaattggctgtcggagagttccgatgacttcagagtcgggtctctgttgctgtcg
cagtgtaaattcgcagtgttcggagtaggaagccgagcctatggagctacgttcaatgcg
gtggctaaggacgtatcgaagcaaatgagagcgttgggcgctaaagagatattgccggtt
tgggaaggtgatgtggatgggggtgatatagacgaggttttcgacgcttggagtgggaaa
gtggtggggttttgtaaaggcggtgtggtggaaaatggtggggtttcgactaatggggta
gattgtgagagcgatgcttgtagtggagatgagacggatgaggaggagtatagtatggag
tcggaaatcgttgatcttgaggatattgctggtaaaggaccttccagaagatcagcgaca
gtgacaaaggctgaaactaatgggactttgaatgggaaaaaggatatggttactccggtg
attagggcgagcttagaaaaacagggatataaaatcattggttcacatagtggtgtcaaa
atttgcagatggacgaagtcacaacttagaggccgagggggttgctacaagcactcattt
tatggtatagagagtcataggtgcatggaggcaacccctagtttagcgtgtgcaaacaaa
tgtgtgttctgttggagacatcatacgaatcctgtcggaaagagttggcagtggaagatg
gatgacccattagaaattgtgaattctgccatagagcagcacacaaagatgattaaacaa
atgaaaggagttccaggtgtcactgtggagcgtctaagagaaggtctctctcccaggcat
tgtgcgttatcacttgtgggtgaacctattatgtatccagagattaatacacttgtagat
gagctgcacagaaggcgggtttcaacctttctcgtaacaaatgctcagtttcctgaaaag
attaaaatgctgaagcctataacccagttatatgtaagtgtggatgctgcaaccaaggag
agtttgaaggcaattgataggccactatttggggacttttgggagaggctcattgattcc
ttgaaagctctgaaagaaaaacagcagcgaactgtctaccgcttgaccctcgtgaaaggg
tggaatacagaagacattgaagcttactctaacctatttagcattgggaaacctgatttt
attgaaatcaaaggcgtaacatattgtggatcatctgctacatcaaagctgaccatggag
aatgtgccttggcactctgatgttcgagatttttcagaggccttagccttgcgaagtcta
ggggagtatgaggttgcatgtgagcatgttcactcatgctgtgtcctcctggcaaaaact
gacaagttcaagatcaacggccagtggttcacatggatagattatgaaaagtttcatgat
ctggtggcatctggaagaccttttgatagcaaggattatatggcaataacaccatcatgg
gctgtctatggagcagaagaagggggatttgatccggatcaatcaaggtataagaaggag
cgacatcacagatcaagcaagtaa
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