KEGG   Ziziphus jujuba (Chinese jujube): 107435844
Entry
107435844         CDS       T04794                                 
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03008  Ribosome biogenesis in eukaryotes
zju03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    107435844
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107435844
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107435844
   03019 Messenger RNA biogenesis [BR:zju03019]
    107435844
   03009 Ribosome biogenesis [BR:zju03009]
    107435844
   03016 Transfer RNA biogenesis [BR:zju03016]
    107435844
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     107435844
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     107435844
Ribosome biogenesis [BR:zju03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    107435844
Transfer RNA biogenesis [BR:zju03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    107435844
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC
Other DBs
NCBI-GeneID: 107435844
NCBI-ProteinID: XP_015902962
UniProt: A0A6P4AUP7
LinkDB
Position
5:complement(join(1994095..1994860,1994940..1995019,1995286..1995361,1995459..1995575,1995750..1995907,1995997..1996071,1996184..1996224,1996313..1996389,1996477..1996605,1997082..1997152,1997238..1997333,1997937..1998032,1998239..1998601,1999193..1999279,1999375..1999452,1999818..1999982,2000335..2000478,2000645..2000707,2000829..2000948,2001088..2001279,2002053..2002129,2002202..2002304,2003033..2003236))
AA seq 1125 aa
MGVPAFYRWLAEKYPLVVVDVIEEEPVVIDGVSIPVDTSKPNPNGLEFDNLYLDMNGIIH
PCFHPEDRPSPTTFDEVFQCMFDYIDRIFGMVRPRKLLFLAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEERLREEFEREGRNLPPKQESQVFDSNVITPGTEFMAALSIALQYYIHN
RLNNDPGWKNIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA
LATHEVHFAILREIVFTPGQQNKCFLCGQMGHLAADCEGKAKRKAGELDEKGGDVAKKPY
QFLNIWTLREYLEYEMRLPDLPFEIDFECIVDDFIFICFFVGNDFLPHMPTLEIREGAIN
LLLAVYKKELKVMGGYLTDSSKPNLSRVEHFIQAVGSYEDKIFQKRARLHQRQAERIKRE
KAQTRRGDDAEPQAQPDLLVPISRFDGSRLASGPRPSPYQQSGSGYSSKSSTSLRKESQV
GQATTDLSELKIKNNQSWESNGTQRASKVARLSSSATVGAAIVEAENSLEIDLQDNKEEL
KAKLKEILREKSDVFNSKDADIDKVKLGDPGWKDRYYEEKFSAKTPEEREAVRRDVVLKY
TEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGELNISFNLGSPFKPFNQLLGVFP
AASSHALPLHYRKLMTDPDSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDEDRLLEEVG
KIEHTLTEEEVRRNTVMCDLLFVMSSHPLSVCIYSLDNRCKQLSDKERAMVKEPIDPNHR
STCSEGMNGYLSPCGGEPCPPVFRSPVAGMEDIMHNQVICAIYRLPDKHKHITRPPAGVK
FPKKTVAFDDLKPEPVLWHEDSGRRHVENGRHNHSGTISGRQLGEAAHRLVVNSLQVKGD
YNGYGNQTHAVIPSYAGRPLYPPPDPYANNHIYFDDDCQMGASSRAAHRHQGQQHRPSNY
DNSIQSQSNSMYNEYRGSTAAARHPSNYRSHSQQYGRNSRDQLASSHGGGERPNHVQYHQ
SGGIHQDVGPIYSHGHRPTSQVPPPGVAYHPYQGGYNFNNHYHQNYQPSGAAGYQWRGGG
SRGGWAPQQSQSVGRGYSRPHQHSGNQYSALDRRSNRPTPPGYGR
NT seq 3378 nt   +upstreamnt  +downstreamnt
atgggagttccagctttctatcggtggttggcggagaagtatccgttggtggtggtcgat
gtgattgaagaagagcccgtcgtaatagacggcgtttcaattcccgtcgataccagcaaa
ccaaatccaaacggtctagaattcgacaatctctacctcgacatgaacgggattattcac
ccttgttttcaccccgaagataggccttccccaacaacttttgacgaggtatttcaatgt
atgtttgactacattgatagaattttcgggatggtgcggcctcggaagttactatttctg
gctattgatggtgttgccccgagggcaaaaatgaatcaacaacggtctaggcgttttaga
gcagcaaaagatgcagcagatgcggcagctgaagaagaacgtttgcgtgaggagtttgaa
agggagggcagaaatcttcctcccaaacaggagtcacaagtttttgattcaaacgttatc
actcctgggactgaatttatggctgctttgtcaattgcattgcagtactatattcataat
agattaaacaatgatcctggttggaaaaatattaaggttatcctctctgatgcaaatgtt
ccgggcgaaggagaacacaaaattatgtcatatgttcgtcttcaaagaaatcttcctggt
tatgatccaaatacacgccattgtctgtatggtttggatgctgatttaattatgttggct
ttggctacacatgaagttcattttgcaatccttagagagattgtattcaccccaggtcag
caaaataaatgcttcctttgtggtcagatgggtcatttagctgcagattgtgaaggaaag
gcaaagaggaaggctggagaacttgatgagaaaggtggtgatgtggccaagaaaccatac
cagtttctcaacatttggactcttagagagtatttggaatatgagatgagacttcctgac
cttccatttgagattgatttcgagtgcattgtggatgattttatattcatatgtttcttt
gtgggcaatgatttcttaccacatatgccaacattggagattcgtgagggagcaatcaac
ttgcttttggcagtgtacaaaaaggaattaaaggtgatgggtgggtatttgaccgactca
agtaagccaaatttgagccgggtggaacatttcatccaggcagttggatcttatgaagat
aagattttccagaaaagagctcgattgcatcagcgacaggcagagagaataaagcgtgaa
aaggctcaaacaagaagaggagatgatgcagagcctcaagctcaaccagacttactggtt
ccaatttctcgattcgatgggtctcgtcttgcttcaggtcctagaccttcaccatatcaa
caatcaggatctggctacagttctaagagctccacatctcttagaaaagaatcacaagtt
ggacaagccacaactgatttatccgagctgaaaattaagaacaatcaatcttgggagtct
aatggcactcaacgtgctagtaaagtcgcacgtttatcttcgagtgctactgttggcgct
gctattgttgaagctgaaaacagtcttgaaatagatttgcaagacaataaagaagaattg
aaagcaaagctcaaggagatacttcgtgaaaagtctgatgtttttaactccaaagatgca
gatattgataaggttaaattgggggatccagggtggaaagatagatattatgaagaaaag
ttttctgcgaaaactcctgaggagcgtgaagcagtacggagggatgttgttttgaaatac
acagaaggcctatgttgggtcatgcactattattatgaaggggtttgttcttggcaatgg
ttttatccctatcactatgcaccatttgcctccgatctcaaggatcttggtgagctgaac
ataagctttaatttgggttctcccttcaaaccattcaatcagctgttgggagttttccct
gctgcaagctcccatgctcttccgcttcattataggaaattgatgactgatccagattca
ccaattattgatttttaccccactgattttgaagtggatatgaatgggaaaaggttctct
tggcagggtattgcaaaattgccttttattgatgaagaccgtcttcttgaggaggttgga
aaaatagaacatactctgacggaggaggaagtccggagaaacactgtgatgtgtgacttg
ctgtttgtgatgtcttctcatcctctctctgtatgcatatattctcttgacaatcgttgt
aaacagttgagtgacaaagaacgagctatggttaaggaaccaattgatcccaaccacagg
tctacatgcagtgaagggatgaatggatatctgtctccatgtggcggagaaccctgccct
cctgtttttcggtctcctgttgcaggcatggaagatatcatgcacaaccaagtcatatgt
gctatatacagacttccagataaacacaagcatattacccgaccacctgcaggtgttaag
ttccctaagaagactgtggcatttgacgatctcaaacctgaacctgttttatggcatgaa
gactcggggaggaggcatgtggaaaatggacggcacaaccattctggaaccatttctggc
cgacagcttggggaagcagcacaccggcttgttgttaatagcttacaggtgaagggagac
tataatggttatggcaatcagacacatgctgtcataccatcttatgctgggcgtcctctt
tatccaccacccgatccttacgccaataatcacatttactttgacgacgattgtcaaatg
ggagcatcttctagagcagctcaccgtcatcaagggcaacaacacagaccatcaaattat
gataatagcattcaaagtcagagtaatagcatgtacaatgagtaccggggttcaaccgct
gctgctcggcatcctagtaattataggtctcattctcaacagtacggaagaaatagccgg
gaccaattggcttcatcccacggtggcggggaacgtcccaaccatgtacagtatcatcag
tcgggaggaattcatcaagatgttgggcccatttactcacatggtcatagacccacatca
caagtgcctccacctggagttgcttaccatccttatcaaggtggttacaatttcaacaac
cactatcatcagaactaccaaccatctggagctgctggttatcaatggcgtgggggtggt
agtcggggtggctgggctccacagcaatcccagagtgttggcagggggtatagtcgccct
catcaacattcaggcaatcaatactctgccttggatagaagatcaaacagacccacgcca
cctggttatggccgctaa

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