Zonotrichia leucophrys gambelii (white-crowned sparrow): 135444377
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Entry
135444377 CDS
T09958
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03013
Nucleocytoplasmic transport
zle03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135444377 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
135444377 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135444377 (THOC1)
03041 Spliceosome [BR:
zle03041
]
135444377 (THOC1)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
135444377 (THOC1)
Spliceosome [BR:
zle03041
]
Complex C
Other components
EJC/TREX
135444377 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135444377 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
Motif
Other DBs
NCBI-GeneID:
135444377
NCBI-ProteinID:
XP_064562014
LinkDB
All DBs
Position
2:105535976..105554193
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AA seq
664 aa
AA seq
DB search
MSPPLFSLPEARLRFTTSTREALINKSIKPLLNAFNQVPGSENEKKCTLDQAFRVVVEEE
IINKAPCENLLAIISLAINGVTEGICTASTPFVLLGDVLDCLPLDQCDKIFTFVEKNVAT
WKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LENVTVFNTNEHESTLGQKHTEEREEGMDVEEGEMGDDEAPTSCSIPIDYNLYRKFWSLQ
DYFRNPVQCYEKVSWKTFLKYSEEVLAVFKSYKLDDTQASRKKLEELKTGGEHVYFAKFL
TSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKAVYQ
LLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERSHPEFQLGPPDSKPMRPVR
KRPAPEDFLGKGSNKKILMGNEELTRLWNLCPDNMEACKSESREYMPTLEEFFEEAIEQA
DPENMVENKYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELP
PPSEEIKTGEDEDEEDNDALLKENNESPEVQRDKAMTGEQIESFASRLGEQWKALAPYLE
MKESDIRQIELDSEDVKMRAKQLLVAWQDQEGSQATPENLMTALTKAGLGELAESLTNDT
EGSS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccgctcttcagcctgcccgaggcgcggctccgcttcacgacatccaccaga
gaggctctgattaacaaaagcatcaagccgttgttgaatgcatttaaccaggttcctgga
agtgaaaatgaaaagaagtgtaccttggatcaagcttttagagttgttgtagaagaagaa
ataataaacaaagctccatgtgagaatctcctggcaattatttctcttgctattaatgga
gtcacagaaggtatctgcactgcatcaactccttttgtgcttttgggggatgttctggat
tgcctccctttggatcagtgtgacaaaattttcacttttgtggagaaaaatgttgctaca
tggaaatcgaacacattttactctgcagggaagaattacttgctgcgcatgtgcaatgat
ctcctaagaagattgtctaagtcacaaaacacagtcttttgtggaagaattcagctgttc
ttggctaggttatttccactttcagaaaagtcagggcttaacctacagagtcagtttaac
ctggaaaatgtcactgttttcaataccaatgaacatgagagcactctgggacagaagcac
accgaggagagggaagaaggaatggatgtggaagaaggtgaaatgggagatgatgaagca
ccaacaagttgttccattccaatagattataacctgtatagaaaattctggtcacttcaa
gattattttagaaatcctgtgcagtgctatgagaaggtgtcatggaaaacatttcttaag
tactcagaagaagttctggctgttttcaaaagttacaaattggatgacactcaggcttcc
cgaaaaaagttggaagaactaaaaacaggaggagaacatgtgtattttgcaaagttccta
actagtgaaaagctgatggatttgcagctgagtgacagtaacttccgtcgtcacatcttg
ttgcagtacctaatactatttcagtatctaaagggacaagtcaaatttaagagttcaaac
tatgttctaacagatgaacagtctctttggattgaagatactacaaaagcagtctaccag
cttctttcagaaaatcctccagatggggaaagattctcaaaaatggtagagcatatatta
aatactgaagaaaactggaactcatggaaaaatgagggctgcccaagctttgtgaaagaa
agatctcatccagagtttcagcttggacctcctgattctaagccaatgaggcctgtgagg
aagaggccagctccagaggacttcttaggaaaaggatcaaataaaaaaatccttatgggg
aatgaggagctgacccgcctttggaatttatgtcctgataatatggaagcctgtaaatct
gagagtagggaatatatgccaacactggaggaattttttgaggaagctattgaacaagca
gaccctgaaaacatggttgaaaataagtataaggctgtgaacaattctaactatggctgg
agagcactgagacttctggcacgtagaagtccccacttcttccagccaacaaaccaacag
ttcaagagtttacctgaatatctagaaaacatggtaatcaaactagccaaagagctgcct
cctccttctgaagaaataaaaacaggtgaagatgaagatgaggaagataatgatgcttta
ttaaaggaaaacaatgaaagcccagaggtgcaacgggacaaagccatgacgggcgagcag
atcgagtcctttgccagcaggctgggggagcagtggaaggccttggccccctacctggag
atgaaggagtctgacatccggcagatcgagctggacagcgaggacgtgaagatgagggcc
aagcagctgctggtggcctggcaggatcaggagggctctcaggccacccccgagaacctg
atgacggcgctgaccaaggccggcctcggggagctggctgagagcctcaccaatgacacc
gagggcagcagctaa
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