Zonotrichia leucophrys gambelii (white-crowned sparrow): 135447561
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Entry
135447561 CDS
T09958
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03013
Nucleocytoplasmic transport
zle03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135447561 (UPF3B)
03015 mRNA surveillance pathway
135447561 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135447561 (UPF3B)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135447561 (UPF3B)
mRNA cycle factors
P-body specific factors
135447561 (UPF3B)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
135447561
NCBI-ProteinID:
XP_064568560
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All DBs
Position
4A:10815582..10822718
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AA seq
482 aa
AA seq
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MKEDKENARPKERRGASAGPSVLLPAGPGSGPAAGTDGRAGTAELDRLERPKDKKETLSK
VVIRRLPPSLTKEQLEEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRD
RFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYSADDE
KLTSTPETLLEEIEARNKELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEE
RRKWKEEERRKRKEAEKLKKVDRCPEKERDRSKEEPKIKLLKKPEKDEKDLERKEKSKKL
ERETLREEKNASSASAKRSDGETKEEKAKKSEDECVKDYRDRDRDFDRDREYERAQRERL
RRQEEERRRQKERYEKEKVFRRKEEEVKKERDLLREKGKKSDLTDFTSSTDKSEKVTKDD
KKEDTIKRDRIRNKDRPAMQLYQPGARSRSRLCQYEDNAAKPPDQGVEKKQEGESSHTKE
EE
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggagaacgccaggcccaaggagcggcgcggggcctccgccgggccg
agcgttctgctgcccgcgggaccgggctcgggccccgccgccggcacggacggcagagcc
ggtacggccgagctcgatcgcctggagcggcccaaggacaagaaggagacgctcagcaag
gtggtgatccgccggctgccgcccagcctgacgaaggagcagctggaggagcacctgcag
cctctgcccgagcacgactacttcgagttcttcgccaacgactccagcttgtacccgcac
atgttctccagagcctacatcaacttcaagaaccaggaggacatcgtcctcttcagggat
cgcttcgacggctacgtttttgtcgatcacaaaggtcaggaatatgctgccatagttgag
tttgcacctttccaaaaagctgcaaaaaagaagagtaagaaaaaggatgccaaaactgga
actattgaagatgatccagaatacaagaagtttttggaaagttacagtgcagatgatgaa
aaattaacctccactcctgaaactttgttggaggaaatagaggcaagaaacaaagagcta
atagctaaaaagactactcctttattgaacttcttgaaaaataaacagagactgagagaa
gaaaaaagagaggagaggaggaggagagaattagaaagaaaaagacaaagagaagaagaa
agaagaaaatggaaagaagaggagagaaggaagagaaaagaagcagaaaaattgaagaaa
gtagacagatgcccagaaaaagaaagagacagatcaaaagaagaaccaaagattaagcta
cttaagaagcctgaaaaagatgaaaaagacttggagagaaaagaaaagtccaagaaactg
gaaagagagactctgagggaggaaaaaaatgcgagtagtgcatctgccaaacgatctgat
ggggagacaaaagaagagaaggcaaaaaaatcagaagatgagtgtgtaaaggactacagg
gaccgagatagagattttgacagagacagagaatatgagagagcacagagagagagactg
aggcgccaagaagaggagcgtcggaggcagaaagagcgctatgagaaagagaaggttttt
agaagaaaagaggaagaggtgaaaaaggagagagacttactcagagaaaagggaaagaaa
agtgatcttacagactttaccagcagcacggacaaatctgagaaagtaaccaaagacgat
aaaaaagaggatacaattaagagggatcgtatcagaaacaaggatcgcccagcaatgcag
ctgtaccagcccggagcccgaagccggagcagattgtgtcagtatgaagacaatgctgca
aaacccccagatcagggagtggaaaagaaacaagagggtgagagcagtcacacgaaggaa
gaggagtga
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