Zonotrichia leucophrys gambelii (white-crowned sparrow): 135458741
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Entry
135458741 CDS
T09958
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03013
Nucleocytoplasmic transport
zle03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135458741 (UPF1)
03015 mRNA surveillance pathway
135458741 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135458741 (UPF1)
Enzymes [BR:
zle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135458741 (UPF1)
5.6.2.5 RNA 5'-3' helicase
135458741 (UPF1)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135458741 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
135458741 (UPF1)
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
135458741
NCBI-ProteinID:
XP_064590091
LinkDB
All DBs
Position
28:5700108..5727726
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPAQGQG
PPGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGASQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccggccaggcggggccggcccagggccagggg
cccccgggcgcggggcagggagctccgggcccgctggaagcgcaggtgaatggccctgat
gggatcctgcagaacggagctgtggatgagaacgtggccaagaccagccagctgctggca
gagctcaacttcgaggaggatgaggaggacacctactacaccaaggacctgcctgtgcac
gcctgcagctactgtgggatccacgaccctgcctgtgtggtttactgcaacaccagcaag
aaatggttctgcaacggccgtgggaacacctctggcagccacatcgtgaaccacctggtg
agagccaagtgcaaggaggtgacgctgcacaaggacgggcccctgggagagacggtgctg
gagtgctacaactgcggctgccgcaacgtcttcctgctgggcttcatcccagccaaggct
gactccgtggtggttctgctctgcaggcagccctgtgccagccagagcagcctgaaggac
atcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctctcgtgg
ctggtgaagatcccctcggagcaggagcagctccgcgcccgccagatcacggcccagcag
atcaacaagctggaggagctctggaaggaaaatccatctgcaaccctcgaggacttggaa
aaacctggtgttgatgaggaaccccagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatattcggtcctctggtcaagcttgaggcagattatgacaagaaactcaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaagaga
attgcttatttcactttgccaaagactgattcagacatgcgcctcatgcagggagatgag
atctgcctgaggtacaagggagacctggcccccctctggaaaggaattgggcacgtgatc
aaagttcctgacagttctacagattatggtgatgagatcgccatcgagctgaggagcagc
gtgggagctcccgtggaggtcacccacaacttccaggtggattttgtgtggaaatccact
tcctttgacaggatgcagagtgctctgaaaacgtttgcagtggacgagacctcagtgtct
gggtacatttaccacaaactgctgggccacgaggtggaagatgtcatcatcaaatgccag
ctgccaaaacgcttcacagcccagggactccctgatctcaaccactctcaggtttatgct
gtcaagaccgtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaaa
acagtgacatcagccaccatcgtgtatcacctggccaggcagggcaatgggcctgtgctg
gtgtgtgcccccagcaacatcgccgtggatcagctgacagagaagatccaccagactggc
ctcaaggtggttcgtctgtgtgccaagagccgcgaggccatcgactcccccgtgtccttc
ctggccctgcacaaccagatcaggaacatggacagcatgccagagcttcagaagctgcag
cagctcaaggatgagactggagaactttcctctgctgatgagaagcgttaccgagcgctg
aaacgcacggcggagcgggagctgctcatgaacgccgatgtgatctgctgcacgtgtgtg
ggagctggggacccccggctggccaagatgcagttccgctccatcctcatcgacgagagc
acgcaggccaccgagcccgagtgcatggtgcccgtggtgctgggggcaaagcagctgatc
ctggtgggtgaccactgccagctgggccctgtggtgatgtgcaagaaggcagccaaggcc
gggctgtcgcagtcgctgtttgagaggctggtggtgctgggcatccggcccatccggctg
caggtgcagtaccgcatgcaccccgcgctcagcgccttcccctccaacatcttctacgag
ggctcgctgcagaacggggtcaccgcagctgacagggtgaagaaaggctttgatttccag
tggccccagcctgacaagcccatgttcttctacgtgacccagggccaggaggagattgcc
agctcgggcacctcttacctgaacaggaccgaggctgccaacgtggagaagatcaccacc
aagctgctcaaggccggggccaagcccgaccagatcggcatcatcaccccctacgagggc
cagcgctcctacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctac
caggaagtggaaattgccagtgtggacgccttccagggcagggagaaggatttcatcatc
ctgtcctgtgtgagggccaacgagcaccagggcatcggcttcctcaacgacccccggcgg
ctgaacgtggcgctgacccgggccaggtacggggtgatcatcgtggggaaccccaaggcc
ctgtccaagcagcccctctggaaccacctcctgaattactacaaggagcagaaggtgctg
gtggaggggcccctgaacaacctgagggagagcctgatgcagttcagcaaaccccgcaag
ctcgtcaacaccatcaaccctggtgcccgtttcatgaccactgccatgtacgatgcacgc
gaggccatcatccccggctctgtctacgaccgcagcagccaagggcgtccatccaacatg
tacttccagacccacgaccagattgggatgatcagtgccggccccagccacgtcactgcc
atgaacattcccatccccttcaacctggtcatgccccccatgccgcccccgggctacttt
ggccaggccaacggccccgctgcaggccggggggctcccaaagggaagacgggccgtggc
gggcggcagaaaaatcgctttgggatccccggcgccagccagtccaacctgcccaacagc
caggccagccaggacgtggtgtcccagcccttctcgcagggccccctgacccagggctac
atctccatgagccagccctctcagatgagccagcctgggctctcccagccggaattatcc
caggacagttaccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggac
tcaacttaccagggggaacgagcttatcaacatggtggagtgacgggactgtcacagtat
tag
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integrated database retrieval system
