Zea mays (maize): 100502035
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Entry
100502035 CDS
T01088
Name
(RefSeq) uncharacterized protein LOC100502035
KO
K13126
polyadenylate-binding protein
Organism
zma
Zea mays (maize)
Pathway
zma03015
mRNA surveillance pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100502035
09123 Folding, sorting and degradation
03018 RNA degradation
100502035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100502035
03041 Spliceosome [BR:
zma03041
]
100502035
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100502035
mRNA cycle factors
Stress granule specific factors
100502035
Spliceosome [BR:
zma03041
]
Complex C
Other components
Complex C specific factors
100502035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_occluded
RRM_7
BRAP2
HPS3_C
Syntaxin_2
Motif
Other DBs
NCBI-GeneID:
100502035
NCBI-ProteinID:
NP_001337047
LinkDB
All DBs
Position
2:166900530..166906100
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AA seq
654 aa
AA seq
DB search
MATQGQAAAGSASESGGSPAALAAAAAAAAAFPATSLYVGDLHESVQDAQLFDVFSQVGG
VVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELLNFTPINGKPIRIMYSNRDPSSRKS
GTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAI
DKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTI
TSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMELK
EKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGSG
FVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQMRPVAMAPSVGP
RMPMFPPGVPGVGQQLFYGQPPPAFINPQAGFAFQQPLMPGMRPGGPMPNFMMPMVQQGQ
QPQRPAGRRAGGMQQPMPMGGQQQVFPRGGRGYRYPTGRGMPDPGMHSVGAVMPPSYEMG
GMPMREAAPQPVPIGALATALANAPPDQQRLMLGENLYPLVEQLEREQAAKVTGMLLEMD
QTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNVSTEQQLANLSLNDGVVSS
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcaagggcaagcggcggctggatccgcgtccgagtccggcggctctccggct
gccttagctgcagcagccgcggcggcggccgcgttcccggcgacttcgctctacgtgggt
gatctgcacgagagcgtgcaggacgcgcagctcttcgacgttttcagccaagtcggcggc
gtcgtctccgtgcgcgtctgcagggacatcaactcccgcaagtcgctcgggtacgcctac
gtcaactacaacaaccagggcgacgctgcacgagcacttgaactgcttaacttcactcct
atcaatggaaagcctatcaggatcatgtattctaaccgtgaccctagctcgcgcaaaagc
ggcacaggaaatatatttattaagaatcttgataagtcaatagacaacaaagctttatat
gacacattctgtgcatttgggaatatactttcatgtaaaattgcaacagacccttcagga
gaatcaaggggctatggttttgttcagtttgagaaggatgaatctgcacagtctgctatt
gataaactcaatgggatgcttatcaatgacaagaaagtgtttgttggaccttttgttcgc
aagcaggacagggaaaatgtctcgagtaatatcaaatttagtaatgtatatgtgaagaat
ctgtcagatactgttactgatgatgagttgaaggagatgtttggaaaatatggaaccata
actagtgctgttgttatgcgggatagcgatggaaaatccaggtgttttggatttgtcaat
tttgaaaatgcagatgctgctgctcaggctgttcaagagttgaatggcaagatattcaat
gataaggaactgtatgttggaagagcacagaagaagtctgaaagagagatggagttgaag
gagaaatttgaaaagaatgttcaagaggtagctgagaagttccaaaacacaaacttgtat
ttgaagaacttagaggagaacattgatgatgagaaattgcgtgaactctttgctgagtat
ggcaatattacttcctgcaaggttatgcgggattcgaatggtgtcagcagaggttctgga
tttgttgctttcaaatctgctgaagatgctaaccgagctcttacggagatgaatggcaaa
atggttggaagcaagcccctttatgtagctcttgcgcagcgtaaagaagacagaaaggca
aagctacaggcacaattttcacaaatgcgtcctgttgcaatggcgccttcagtaggtcct
cgcatgcccatgtttccacctggtgtccctggagttggtcagcagctgttctatggtcag
ccaccaccagccttcatcaaccctcaggctggatttgctttccagcaacctctgatgcct
ggtatgaggcctggtggtccaatgccgaactttatgatgcctatggttcagcaaggacag
caaccacagcgtcctgctggtagacgtgctggtggaatgcagcagcccatgccaatgggt
ggtcagcaacaggtgttccctagaggtggtcgtggctatcgctatcctactggacgtgga
atgcctgatcctggcatgcacagtgttggtgctgtgatgccaccttcatatgagatggga
gggatgccaatgagagaagctgccccccaacctgttccaattggggcgctagccactgca
cttgctaacgccccaccagatcagcagagacttatgcttggtgagaacctgtatcctctt
gttgaacagctggaacgtgagcaggctgccaaggtcactggcatgcttttggagatggat
cagacggaggttcttcacctgctggagtcgccagatgctctgaaagccaaggttgctgaa
gccatggaggtcctccgctctgcccagcatctccagcagagcaatgtttctactgagcag
cagctggctaatctatcattgaatgatggcgtcgtctccagctga
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