Zea mays (maize): 103636001
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Entry
103636001 CDS
T01088
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
zma
Zea mays (maize)
Pathway
zma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103636001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zma03041
]
103636001
03009 Ribosome biogenesis [BR:
zma03009
]
103636001
Enzymes [BR:
zma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103636001
Spliceosome [BR:
zma03041
]
Complex A
U1 snRNP components
U1 related factors
103636001
Complex B
103636001
Ribosome biogenesis [BR:
zma03009
]
Eukaryotic type
Pre-60S particles
Helicases
103636001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
103636001
NCBI-ProteinID:
XP_008656582
UniProt:
K7UYS9
LinkDB
All DBs
Position
8:complement(140587136..140592287)
Genome browser
AA seq
778 aa
AA seq
DB search
MSGASGSTGRAAPRYAPDDLTLLKPWRGLVDGTTGYLYYWNPETNVTQYERPMPPENQLP
PPPPPLPPPPPRSRDRRDRSRSRSRTPPRRDRRDRDRDDEHASSKTASSHHHPAPIAVAD
YPSTEAYRRRHEITVTGDNVPAPITSFEAGGFPSEILKEIQRAGFASPTPIQAQSWPIAM
QNQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNSTRNGPTVLVLAPTRELATQILDEAMKF
GRSSRISCTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRVSLKQVSYLVLDEA
DRMLDMGFEPQIRKIVKEIPHRRQTLMYTATWPKEVRRIADDLLVHPLQVTIGNVDELVA
NSAITQHIEVITPSEKQRRLEQILRSQVSGSKILIFCTTKRMCDQLARTLTRQFGASAIH
GDKSQSEREKVLNHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRT
GRAGATGVAYTFFCDQDSKYAADLIKILEGANQQVPRDLEDMASRGGGRGKKRNRWASRS
ERGGPRSELDSRYSGRDGLASSGRSESGRGSHGRDDYGSRGRYDSGETDGRSRRSARGRS
RSRSPSPKRSHHHEARRSRSRSRSRSCRNFRASRSKSHSPVASSRHEKAAVISGSTQPNL
GYAEHKSPPRSHSGDDHVNHPDQKDDHMGDGKMERVDLDRSPSPQYDKSAPYSPAYNGKA
SDSMSPNVQPKADAKYVKPSGKPEPASPLRHSKGRDDDEGIIDDDGEIAEGEMMMKVS
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggagctagtggctcaaccgggcgcgcggccccgcggtacgccccggatgacctg
acgttgctcaagccgtggcgcggcctcgtcgacggcaccaccggctacctgtactactgg
aacccggagacgaacgtcacgcagtacgagcggcctatgccccctgagaatcagctgccc
ccgcccccgcccccgttgcctcccccgcctccccggagccgcgaccggcgcgacaggtcc
agatcccgatcccgcacccctcccaggcgcgaccgccgcgaccgcgaccgtgacgacgag
catgcgtcctccaagacggcgtcttcccaccaccatccggctccgatagccgtcgccgac
tatccgtccaccgaggcataccgacgccgccatgagatcaccgtcacgggggataacgtg
ccggctccaataacttcatttgaggctggtggcttcccatcagaaattctgaaggagata
caacgtgctggatttgcaagcccaacacctatccaagcgcagtcatggccaattgctatg
caaaatcaagatgtagtagctattgcgaagactggatcaggcaaaactcttggttatcta
cttcctggatttatgcatatcaagcgcctgcagaacagcactaggaatggtccaacagtg
ctagttttggccccaacaagggaacttgcaacgcagattctggatgaagctatgaaattt
ggaagatcatctagaatttcttgcacgtgcctatacggtggtgctcctaaaggtcctcag
ttgagagatttagatagaggggttgatgttgttgttgcaacacctggaaggttaaatgac
attttggagatgcgaagggtaagtcttaagcaagtgtcatatcttgttctggatgaggct
gatcgcatgctggacatgggctttgagccacaaatacggaagatagtgaaagagatacct
caccgtcggcaaacccttatgtacaccgctacttggcccaaggaagtccggaggattgca
gatgatcttcttgtccatcctttacaggtgacaattggaaatgttgatgaacttgttgct
aatagtgctattactcagcatatagaagtcataacaccctcagaaaaacaacggcgcctg
gagcagatattacgatcccaggtttcaggttcaaagatattaatattttgtaccaccaag
aggatgtgtgaccaacttgcaaggacactcaccaggcagtttggagcttcagccattcat
ggtgacaagtcccaaagtgaaagggagaaggtcctgaatcattttagatctgggcgctct
cctattttagtggcaactgatgttgctgcgcgaggtttggacatcaaagatatcagggta
gtgatcaactatgacttccccactggtgttgaagactatgttcacaggattggcaggaca
ggaagggctggtgccactggtgttgcatatacatttttctgtgatcaggactcaaaatat
gctgctgacctaatcaaaattcttgaaggggcaaaccaacaggtgccccgtgatttagag
gatatggcttctcgtggtggtgggcgaggtaagaagaggaaccgttgggcatcccgctct
gaaaggggtggtccacgatctgaactggattcaaggtacagcggcagagatggattagca
tcttccgggagatcagagagtggtcgtggcagtcatggaagggatgattatggtagccgt
ggcaggtatgactctggtgaaactgatgggcgatctcgtaggtctgctagaggtcgcagt
agaagtcgtagcccaagccccaagaggtcacaccatcatgaagctaggcgtagccgaagc
aggagcaggagccgaagctgtagaaactttcgtgctagccgcagcaagagtcacagccct
gttgctagcagtaggcatgaaaaggctgctgttatttcaggatctactcaacctaacttg
gggtatgcagagcacaaaagccctccaagatctcactctggggatgaccatgtgaaccac
cctgatcaaaaggatgaccacatgggagatgggaagatggaaagggttgatcttgatcgc
tcgcccagcccacaatatgataagtctgctccatatagtcctgcgtacaatggcaaagcc
agtgactcgatgagccctaatgttcagccaaaggcagatgccaaatatgtcaaaccttct
gggaaacctgagcctgcatctccattgcgccacagcaaaggcagagatgatgatgaaggt
atcatagacgacgatggagagattgctgagggtgagatgatgatgaaggtatcatag
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