Zea mays (maize): 103645969
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Entry
103645969 CDS
T01088
Name
(RefSeq) putative DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
zma
Zea mays (maize)
Pathway
zma03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
103645969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zma03400
]
103645969
Enzymes [BR:
zma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103645969
DNA repair and recombination proteins [BR:
zma03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
103645969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
Ribonuclease_3
Motif
Other DBs
NCBI-GeneID:
103645969
NCBI-ProteinID:
XP_020403734
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All DBs
Position
2:complement(11913095..11936809)
Genome browser
AA seq
1208 aa
AA seq
DB search
MAAKVRFGLLVAMFQAMSGDKSSAKKRGRLRAFLDRAYVPCGGRDDYFSALRLVLPGLDR
ERGSYGLKEAALAAVLVDALGIAKDSTDAVRLTNWRRGGGGRNAGNFSLVAAEILQRRQG
ITSGGLTIKEVNDALDRLATTENRSEKALILSNLIKKTNALEMKWLLMIILKDLKLGISE
KSIFEEFHPDAQDLFNVTCDLKFVCEKLNDRSQRHKRQDIEIGKAVRPQLALRVRDSSVA
WKKLHGKQVVAECKFDGDRIQIHKNGEEIHFFSRSFLDHTEYAPGMSKIIKENILVDRCI
LDGEMLVWDTVLNRFAEFGSNQEIAKAAREGLETDRQLCYVVFDILYAGDTSVIHQSLTE
RHQILQKVVKQLKGHLEILIPRRGLNVPRPSDEPCWSIIAHNAEDVDKFFKETIENRDEG
IVLKDLDSKWEPGDRNGKWLKLKPDYIHAGADLDVIIIGGYYGSGRQGGEVAQFLVGLAV
PSDDNSYPKRFLSFCRVGTGLSDEERDALVTKLNPYFRKNEYPKKPPKFYEVTNNSKERP
DVWIESPDKSVIISVTSDIRTIKSEVFAAPYCLRFPRIQRVRYDKPWHECLDVQAFVDIV
HSNNGTIQRVADDNSLKNDDTKHSRTNKKVEKCVSIIPSHFMKTDVSGLKGETLIFANLI
FYFVNIPSSYNLEYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYQAALRQGRIIHYE
WILDCCKEKHLLHLHPRYILFIADFARHKFPEEIDSYADYYYWDIEIADLKQIFCNIDKV
SGDSNMVIQYKKKHCIDERFCFFQGCCVYLHNAPLVNADYNVISDLALKRVKQDLTMHGG
QVCSSIAPATHLVVVSVLQVYNFDNLYKSFPPAERRYLHDKRLHVVSNKWLEDSVEKQMK
LSETAYSLKPDTLEELEIKRSEENVQPPEHKFEEHKEVERSHAENMPRKRSRPTSSRTAR
AAPRAVRRIRPRRGNQKAKIGDVESEESGPSECQDDENLDTDDTSKIEEGITNKNKGLPA
PASKPAWRTGATKGNQHTKIDDSGSEESGPCETAQDDYISKMEVDNIDNDRGPPPGAQLF
TLGEQEVKGVKLNTVEEKQDSPFQRTTAAEAMSSTPGEKIEQMADPLHAMLLDMLPLLGQ
KRTEDTSKAPLAKAEKDPPAIGSSTSNSEILLPDAGTSGVPAPEPSAAPPKKKKVSYRDV
VSELLKDW
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaggtgcggttcggcctactggtggcgatgttccaggccatgtcgggcgac
aagagttcggcgaagaagcgcggccgcctgcgcgcgttcctcgaccgcgcctacgtgccc
tgtggcggtagggatgactacttcagcgcgctccgcctcgtgctgccggggctcgaccgt
gagcgcggctcctacggtctcaaggaggcggccctcgccgccgtgcttgtggacgccctt
ggcatcgccaaggactctaccgacgccgtccggctcaccaactggcgccgcggtgggggt
ggccgcaacgccggcaacttttcgcttgtggccgctgagatcttgcaacggaggcaaggt
ataacttctggcggattgacgataaaggaggtcaatgatgcacttgatcgtctagctaca
actgagaacaggtctgagaaggctttaatactttccaatctgatcaagaaaaccaatgcc
cttgaaatgaagtggcttctgatgataattcttaaagatttgaaattagggataagcgag
aagagcatattcgaagaatttcatcctgatgcgcaagacttgttcaatgtcacttgtgac
ttgaaatttgtctgtgagaagctcaatgatcgaagccaaaggcataaacgccaggatata
gaaattgggaaggctgtcaggcctcagctagctttgagagttcgtgattcttcagttgct
tggaagaagcttcatggaaaacaagtagttgctgagtgcaaatttgatggtgaccgtatt
caaatccacaaaaatggggaagagattcatttcttctctaggagctttcttgatcacact
gaatacgcacctgggatgtcaaagattattaaagaaaatatcttggttgacagatgtata
ttggacggagaaatgcttgtctgggacactgtacttaaccgttttgctgaatttggctca
aaccaggaaatagctaaggctgcaagagagggattggagactgatcgacagttgtgttat
gttgtttttgacatcctttatgctggagacaccagtgttatccaccaaagtttgacggag
cggcatcaaattctgcagaaggttgtgaaacagttaaagggtcatcttgagattttgatc
ccaagacgtggtttaaatgtccctcgcccttcagatgaaccatgctggtcgattattgca
cataatgctgaagacgttgataaattcttcaaagagactatcgagaacagagatgagggc
attgtactgaaggaccttgattccaaatgggaacctggtgatcgaaatggaaagtggctt
aaactaaagcctgattatatacacgcgggtgccgatctggatgttattattataggggga
tactatggatcaggacgtcaaggtggagaggtcgcacagtttttagttggccttgcagtc
ccttcagatgataatagttatcccaaaaggttcctttcgttttgccgagttggtactggc
ctctctgatgaagagcgtgatgctcttgtcaccaaactgaacccttatttcaggaaaaat
gagtaccccaaaaaaccaccaaaattctatgaagttacaaataactcaaaggagagacca
gatgtttggattgaaagtcctgataagtcagtcataatatctgtaacaagtgacattcgt
acaatcaagtctgaggtatttgctgctccatactgtttgaggttcccccgtattcagcga
gtgagatatgacaagccatggcatgagtgccttgatgtgcaggcatttgtggacattgtg
cattcaaataatggtacaatacaaagggtggcagatgataatagcctgaagaatgatgac
acaaaacattcaagaacaaacaaaaaagtagagaagtgtgtctcaatcatcccttcacat
ttcatgaaaactgatgtatcaggtctcaagggagaaaccttgatatttgccaacctgatt
ttctattttgtcaacattccatcatcatataatctcgaatattttcataaactggttgtg
gaaaatgggggatctttctccatgaatctcaatgactctgttacacactgcatagctgcg
gagaagaaaggtatcaaatatcaggcagctttacgacagggaagaatcattcactatgag
tggatattagactgttgcaaggaaaaacatcttcttcatttgcatcctaggtatatacta
tttattgctgatttcgctaggcacaaatttcctgaagagatcgattcatacgctgactat
tactactgggacattgaaattgctgacctcaagcagattttctgtaacattgacaaagtt
tctggtgattcaaacatggttattcagtacaaaaagaagcattgcatagatgaaagattc
tgtttcttccagggttgctgtgtctacttgcataatgcgcccttagtgaatgcggactac
aatgtaatatctgatcttgcactgaagagggtgaagcaggatctaacaatgcatggtggt
caagtctgcagcagtattgctccagctactcatttggtagtagtttcggttttacaggtc
tataactttgataacctgtacaagagcttccctcccgctgaaagacgttatctacatgac
aaaagattacatgttgtcagtaacaagtggttggaagattcagtggagaaacaaatgaag
ctctctgaaactgcttacagccttaaaccagatacactagaagaactagaaattaaaagg
agtgaggaaaatgttcagcctccggagcataagtttgaggaacacaaggaggttgaaaga
tctcatgcggaaaatatgccaaggaaaaggagtaggccaaccagttcaagaactgcaagg
gctgctcctagagcagtccgccgaataaggcctagaagaggaaaccagaaagcaaaaata
ggtgatgttgaatctgaagaaagtggccccagcgaatgccaagatgatgaaaatttggac
acagatgatacctctaagattgaagaaggtattaccaacaaaaacaaaggactccctgca
cctgcttcaaaaccagcctggagaacaggggctacaaaaggaaatcagcatacaaaaata
gatgacagcggatctgaagaaagtgggccttgtgaaacagcgcaagatgattacatctct
aagatggaagtagataacattgataatgaccgtggaccaccgccaggtgctcagcttttc
acgttgggggagcaagaggtcaaaggtgtcaaattgaacaccgtggaggagaaacaagac
agccctttccagagaacaaccgctgctgaagcgatgagtagcacgcctggtgagaagata
gaacaaatggctgatccgttgcacgccatgcttctggatatgttgccactcctgggccag
aaaaggacagaagatacaagcaaggcgcccttggcgaaagctgagaaggatccacctgcg
ataggaagctccacatccaattctgagattctgttgccagatgctggaacatccggggtt
ccagccccagagccaagtgcagctccaccaaagaagaaaaaagtgagttacagagatgtc
gttagtgaacttctgaaagattggtga
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