Zea mays (maize): 542146
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Entry
542146 CDS
T01088
Name
(RefSeq) DEAD box RNA helicase 1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
zma
Zea mays (maize)
Pathway
zma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
542146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zma03041
]
542146
03009 Ribosome biogenesis [BR:
zma03009
]
542146
Enzymes [BR:
zma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
542146
Spliceosome [BR:
zma03041
]
Complex A
U1 snRNP components
U1 related factors
542146
Complex B
542146
Ribosome biogenesis [BR:
zma03009
]
Eukaryotic type
Pre-60S particles
Helicases
542146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
542146
NCBI-ProteinID:
NP_001105241
UniProt:
A0A804N8X6
Q6S4Y1
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All DBs
Position
3:complement(168481313..168485716)
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AA seq
571 aa
AA seq
DB search
MNPYDLRFADPSSYHDRRSDLTVAPTFAPPAPVAAANLNPYAAAYPLPVPVPVPAAPAGG
DYQRYGQGGRGRGGGGRGGGGGYGGGGRGGGRGRDGLDSLALPKPDFRSLIPFEKNFYVE
CPSVQAMSEADVAQYRRLRDITIEGRDVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQ
SQGWPMALKGRDLIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAV
QIQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAGHTNLRR
VTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVEALARQFLQNPYKVI
IGSPELKANHSIQQIVEVISDHEKYPRLSKLLSDLMDGSRILIFFQTKKDCDKITRQLRM
DGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINYDFPTTLE
DYIHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKILREAGQVVNPALESMSRSSNSTGG
GNFRSRGRGGFGNRGHMSGSNTFPLGGRRPY
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgtatgatctccgcttcgctgacccctcatcctaccacgacaggcgcagcgac
ttgaccgtggctcctacgttcgctccgccggctcccgtggctgcggcgaacctgaaccct
tacgccgccgcctacccgctgcctgtgcccgttcccgtgcccgcggcccccgcgggcggc
gactaccagcgctacgggcagggaggcagaggccgtggtggcggtggcagaggcggtgga
ggagggtacggaggtggcggcagaggaggaggtcgcgggagggacgggcttgactcgctc
gccctccctaagccggactttcggagcctgataccgttcgagaaaaacttctacgtggag
tgtccctccgtccaggcaatgtcggaggcggatgtggcgcagtaccgccgcctccgggat
atcaccatcgagggccgggatgtgcccaagccggttagatacttccaggaagccaacttc
ccagattactgcatgcaagctattgccaaatctggatttgtggagccaacacctattcaa
tctcaaggttggcctatggctttgaagggtagggacctgattggtatcgctcaaacaggc
tcagggaaaacattatcttatctgttacctgggttggttcatgttggtgcccagcctcgg
ctagaacaaggcgatggcccaattgtattaattctcgctcccacgagagaactggctgtt
caaatacaggaagaatctacaaaatttggatcatattcaagaactagaagcacatgtgtc
tatggtggtgcacctaagggtccacaaatacgggaccttagaagaggagttgaaattgtc
attgcaactcctggccggttgattgatatgctggaagctggtcacacaaacctacgtaga
gtgacataccttgtgttggatgaggcggaccggatgctagatatggggtttgagccccaa
attcggaaaatagtagcacagatccgcccagacaggcaaaccttgtactggagtgccaca
tggcctagagaagttgaagccttagcaagacagtttctacaaaatccttacaaggtaatc
ataggctcacctgaacttaaagctaatcattccatacaacaaattgttgaagttatttca
gatcatgagaagtatccaagactcagtaagctcttgtctgatctaatggatgggagccgt
atcttgatattcttccaaacaaaaaaggattgcgataagatcacccggcagcttagaatg
gatgggtggccagcattatctatacatggtgataaagctcaagctgaacgggactatgtt
cttgcagagtttaagagcggcaagagccccataatggctgccacagatgtggcagcacgt
ggtcttgatgtgaaggacataaagtgtgtgataaattatgattttccaacaactcttgaa
gattatattcacaggataggtcgaactggccgtgctggtgctagcggaactgcatttact
tttttcacacacgcaaatgcaaagttctcaaggaatctagtgaagattctgcgagaagct
ggccaagttgtgaatcctgccttagaatccatgtccaggtcttcgaactcaacgggagga
ggcaattttcggtcgagaggcagaggtgggtttggtaaccggggccatatgtctggatca
aatacctttcctttaggaggaagaaggccatattga
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