Zingiber officinale (ginger): 121979377
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Entry
121979377 CDS
T08725
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU70-like
KO
K10884
ATP-dependent DNA helicase 2 subunit 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121979377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121979377
03400 DNA repair and recombination proteins [BR:
zof03400
]
121979377
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
121979377
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
121979377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku_N
Ku
Ku_C
SAP
HeH
Motif
Other DBs
NCBI-GeneID:
121979377
NCBI-ProteinID:
XP_042387305
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Position
5A:complement(6279030..6295368)
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AA seq
629 aa
AA seq
DB search
MDLDPEGIFRDDSDSDAEFHEEKEATKDLAVYLIDASPKMFAPVTAPDNAENGTYFHVVI
DCISQSLKSQIINRLNDEVALCFFNTKEKKNLQDLNGVYVFNVEERDFLDQPTAKLIKEF
SSIENIFMNNIGSRYGILPGSRDNSLYNALWVAQALLRKGSAKTASKRILIFTNEDDPFG
SMTGAIKADMIRTTLQRAEDAKDLGISLELLPLGSLDEEFNLSKFYAEMIGLEGDELVQY
LPSANEKLMDMKDQLRKRIFNKRKVRTLTFSIINGISIQVNTYALIRPTLPGATIWLDSV
TNLPLKIEKSLICADTGALIEGRPKLFHSYKNQRVLFSVDQISEIKKVSNYHLRLLGFKP
IDCLKDYHNLRPSTFIFPTDEEIIGSTRIFIALYRSMLHLKRFALAFYGSSSSSRLVALV
AQDEIVNSGGQLEPAGMHMIYLPYSDDIRDAEQYHISVDAAVPRASDDQIQKASALMKQI
NLENFSVLQFANPALQRHYGLLQVLALDEDEMPDFKDETLPDEKGLARRTVFHALEDFKV
AVYGQNHDQEETEHMAAKASGSEATRKRKMIANKATGESAKYDWEDLAENGKLKDLTVVE
LKFYLTAHNLPVTGKKDALISRILTHMGK
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggatttggaccccgagggcatcttccgcgacgactcagattctgacgccgagttccat
gaggagaaggaagccactaaggatctcgcggtctatctcatcgatgcgtcccctaaaatg
ttcgcccctgttaccgctccggataatgcggaaaatgggacttatttccatgttgtaata
gactgcatttctcaatctttgaagtcccaaataatcaatagattaaacgatgaagttgct
ctttgtttctttaacactaaagaaaagaaaaacctacaagatcttaatggtgtgtatgtc
ttcaatgtcgaagagagagatttccttgatcaacctactgcaaagttgattaaagagttt
tccagtatagaaaacatatttatgaacaatattggaagtcggtatggaattttacctgga
tctagagataattctttgtataatgctctttgggttgcacaggcactgttgcgcaagggc
tctgccaaaactgctagtaagagaattcttatttttactaatgaagatgatccatttgga
agtatgacaggtgccataaaagcagacatgattagaacaaccttacagcgtgcagaagat
gcaaaagacttaggcatctcactcgagcttcttccactgggtagtttagatgaggagttc
aacttatccaaattttatgctgaaatgattggattggagggtgatgaactagtccagtac
ttgccatctgcaaatgaaaagttgatggatatgaaagatcagttgagaaaaagaattttt
aacaagcgaaaagttagaacacttacattttccataataaatggaatctctattcaagtg
aatacttatgctttaatccgtcctactttgccaggggcaactatatggcttgattctgta
actaatcttccactgaagatagagaagtccttaatctgtgctgacactggtgctttaatt
gagggacgacctaaacttttccactcttacaagaaccagagagttctcttctcagtggat
cagatatctgaaatcaagaaggtttcaaattaccaccttcgtcttttggggttcaagcct
atcgattgtttaaaagattaccataatttgaggccatctacatttatttttccaactgat
gaggaaatcattgggagcactcgcattttcattgctttatatcgatcaatgctacatctt
aaacggtttgctcttgcattctacggcagctcaagcagttctcgactggttgcacttgtt
gcacaagatgagatagtaaattcaggaggtcaactcgaacctgctggaatgcacatgata
tatctaccatattctgatgatattagagatgctgaacagtatcacataagtgttgatgct
gctgtaccacgtgcctcagatgatcagatccagaaagcatctgctttgatgaagcaaata
aacttggaaaatttttcagtgctacaatttgcaaatcctgctttgcagagacattatgga
ttactgcaagtcttagctctggatgaagatgagatgccagatttcaaggatgaaaccctg
cctgatgaaaagggattggctagacgtacagttttccatgcgctggaagatttcaaagtt
gctgtctatggacaaaaccatgaccaggaggaaactgaacacatggctgccaaagcttcc
ggcagtgaggctactcggaaacgcaaaatgatagccaacaaagccaccggtgagagtgca
aagtatgattgggaggatcttgcagaaaatgggaagctaaaggatctaacggtggtggag
ttgaagttctatctgactgcacacaaccttccagtgactgggaaaaaagatgctttgatt
agcaggattttaactcacatggggaaataa
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