Zingiber officinale (ginger): 121992831 Help Entry 121992831         CDS       T08725                                  Name (RefSeq) DNA ligase 1-like isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism zof  Zingiber officinale (ginger) Pathway zof03030   DNA replication zof03410   Base excision repair zof03420   Nucleotide excision repair zof03430   Mismatch repair Brite KEGG Orthology (KO) [BR:zof00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     121992831    03410 Base excision repair     121992831    03420 Nucleotide excision repair     121992831    03430 Mismatch repair     121992831  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:zof03032]     121992831    03400 DNA repair and recombination proteins [BR:zof03400]     121992831 Enzymes [BR:zof01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      121992831     6.5.1.6  DNA ligase (ATP or NAD+)      121992831     6.5.1.7  DNA ligase (ATP, ADP or GTP)      121992831 DNA replication proteins [BR:zof03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     121992831  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      121992831 DNA repair and recombination proteins [BR:zof03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      121992831    NER (nucleotide excision repair)     Other NER factors      121992831    MMR (mismatch excision repair)     Other MMR factors      121992831 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HTH_36 Motif Other DBs NCBI-GeneID:  121992831 NCBI-ProteinID:  XP_042403362 LinkDB All DBs Position 6B:complement(80812681..80830441) Genome browser AA seq 740 aa AA seqDB search MQWLRAPFRLPLGLSPFPRLLPSLLPFSEPAQIPLLHCRTAMSGRRTVTDVLMGNARAAA KAKNPTPASSDQTLTPSKKPRILGDDAKNLNEDPPVDGSNFTVELKRKCADFNPKKATSW KNGEPVPFLFLARALELISNESGRIAMTEILCNVFRAVIATTPGDLLATVYLSANKIAAP HEGIELGIGDASLIKALAEAYGRKEEQVKKQLKELGDLGLVAKASRSSQKVMFKPQPLTI SKVFNTFRAIAKESGKDSQDKKRNHIKGLLVAATDCEPQYLVRLLQSKMRIGLAEKTVLV ALAQASVFSETNQNQHSQAQPDFEEAGRIVKQVYSVLPIYDKIVPELLSVGVWKLQEACK FSLGVPVGPMLAKPTKAVSEILDKFQGTEFTCEYKYDGERAQIHYMEDGSVEIYSRNAER NTGKYPDVVSSVSRFKKANVKSFVLDCEIVAYDREKQKILPFQILSTRARKGVILSDIKV AVCTYAFDILYIDGQPLLQDQLKIRREYLYSCFEEVPGIFQFATAITSNDLEEIQKFLDT AVNSSCEGLIIKTLDKDATYEPSKRSNNWLKLKKDYMESIGDSLDLVPIAAFHGRGKRTG VYGSFLLACYDEHNEEYQSICNIGTGFSESQLEERSTSLRSKIIPKPKPYYRYSDTMNPD VWFEPSEVWEVKAADLSISPVHRAANGAVDANKGISLRFPRLLRVRDDKTPEEATTSDQV ADMYRAQKINHSNNQDDDDD NT seq 2223 nt NT seq  +upstreamnt  +downstreamnt atgcagtggctgcgcgccccgtttcgccttcccctcggactctctccgtttccgcgtctt cttccctcgcttctccctttctcagaacccgcacaaatcccgctccttcactgccgaact gccatgtccggccgccgcaccgtcaccgacgtcctcatgggcaacgcccgcgccgccgcc aaggccaagaaccctacccctgcctccagtgaccaaaccctgactccttctaagaaacct agaatcttaggcgacgatgcgaaaaacctcaatgaggatcctcctgtcgatggcagcaat ttcaccgtggagttgaagaggaagtgcgccgacttcaaccccaagaaggccacgtcctgg aagaacggcgagcccgtgcccttcttgttcctcgcgcgtgccctcgagctgatctcgaac gagtccggaaggatcgccatgacggagatcctatgcaacgtgtttcgggccgtcattgcc accacgcctggggatcttcttgccaccgtttacctttcagctaataagattgcagcgcct catgagggtattgagctcgggatcggcgacgcttctctcataaaggcactcgcagaggct tatgggaggaaggaggagcaagtgaagaaacaactcaaggaactgggtgacttgggtctt gtggccaaagctagccgatcgtctcagaaagtgatgttcaagcctcaacctttgacgata tctaaggtgttcaacacattccgtgctattgcaaaggagtctggaaaagatagccaagac aagaaaaggaatcacatcaaaggacttcttgttgcagcaactgattgtgaacctcagtat ttagttcgtcttctccagtctaagatgcgaattgggttggcagagaaaactgtcctagta gctcttgcacaagcttctgtgttctctgaaacaaatcaaaatcaacattcacaagctcaa cctgattttgaagaggctgggagaattgtcaaacaagtctattcagtactcccaatctat gataaaattgttcccgagcttctttctgtgggagtgtggaaacttcaagaggcatgcaaa ttttctctaggtgttcctgtggggcctatgttagctaagccaacaaaggcagtgtctgag atacttgataaatttcaaggaacagaatttacctgtgaatacaaatatgatggtgaacgt gcccagatacattatatggaggatggatcagttgagatatatagtcggaatgcagaaaga aatactgggaagtacccagatgttgttagctcagtgtcaagattcaagaaggctaatgtg aaatcctttgtgctagactgtgaaattgttgcatatgaccgtgagaaacaaaagatatta cctttccagatattgagtactcgagctcggaaaggagtgatcctaagtgacataaaagta gcagtttgcacatatgcctttgacattctgtatattgatggccaacctcttcttcaagat cagctgaaaattcgtagagagtatctttatagttgctttgaggaagttcctgggatattt cagtttgcaactgcaataacatcgaatgacctggaggaaattcagaaatttcttgacact gctgtcaattccagttgtgaaggtctgattataaagacgctggataaggatgctacctat gagccttcgaagcgatcaaataattggttaaagttgaagaaagactacatggaaagcatt ggtgattcccttgacttggtacctattgctgcattccatggtaggggaaagcgtacaggt gtttatggttcgttccttcttgcttgctatgatgaacataatgaggaatatcaaagcatt tgcaatataggtactggtttctctgaatcacagcttgaagaaagatcaacaagtcttcgc agtaaaatcattccaaagcccaagccatattatcgctattcagatacaatgaatccagat gtatggtttgagccatcagaggtttgggaggttaaggctgctgacttgagcatcagtcct gttcatcgtgctgctaatggtgctgttgatgcaaataaaggaatttcactacgatttcct cgtctgctacgtgtgcgtgatgacaaaacccctgaagaagcaacaacatctgatcaggtg gctgatatgtatcgtgcacagaagatcaaccattcaaacaatcaagatgatgatgatgat tga

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