Zingiber officinale (ginger): 121998089
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Entry
121998089 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121998089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121998089
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121998089
Spliceosome [BR:
zof03041
]
Complex A
U2 snRNP components
U2 related factors
121998089
Complex B
121998089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
121998089
NCBI-ProteinID:
XP_042408774
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All DBs
Position
6A:130474737..130478473
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AA seq
1121 aa
AA seq
DB search
MEDTKPRKESRRSKEERSGDRHRERDRDTDKYRDREDRESRRSDLERSVDDKEHRHRDKH
RESRHLREREKERAKERTKDREERDRDKEEREREKEERTREKEERDREREKEKAREREDR
ERERERKREERERDREEREKEREREKERAREKRRALDSDEEEYERKRRRRESSHDRDRER
SSHRHGEGSEDSRRSRATDKESDVKETKTREEVLEEEQRKLDEEIDKRRRRVQEWQEMRR
KKEEEEREKMGSENGKEDEAMLGKNWTLEGESDDEDAPPKSDKDISVDGDGLKLKDGNDN
DAMDAMDEDAANGHIGTKDSEGGNDDDEDEIDPLDAFMNSMVLPEVEKLQSAEIAAKPHE
KKGIMTKASKEAFSNGDRLRKGEKNAMGRIIPGEDSDSDYEDPENEEVALEDEDDEEFMK
RVKKTKAEKLSIVDHSKIQYPPFRKNLYIELKEIARMSTEEVSAYRKQLELKIHGKDVPK
PIKTWSQAGLGTKILDTIKKLSFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLP
MLRHIKDQPEVVSGEGPVGLVMAPTRELVQQIHNDIKKFAKPLNINCVPVYGGSGVAQQI
SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQN
TRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL
LEILGEWYEKGKILVFVHSQDKCDALFRDLLKHSYPCLSLHGAKDQTDRESTISDFKNNV
CNLLIATSIAARGLDVKELELVVNFDVPNHYEDYVHRVGRTGRAGRKGCAITFISLEDER
YAPDLVKALELSEQAVPADLKALANAFMAKVNQGTEQAHGTGYGGSGFKFNEEEDEARKA
AKKAQAREYGFEEDKSDSDSEDEGIRKAGGDLSQAVVSAHVAALAAVSKAANTSMPTQVV
TPLPFTAALPSANLSNVAALSAVPSVTALPGEAAARATAIAAALNLKHNLAKIQAEAMPE
HYEAELEINDFPQNARWKITHKETLWPISEWTGAAITTRGQYFPPGKIPGPGERKLYLFI
EGPTESSVKKAKAEVKRVLEDYTAQALNLSGASQPGKYSVI
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atggaggacacgaagccgaggaaagagtctcggcggagcaaggaggagaggagcggcgac
cggcaccgcgaaagggacagggacacggacaaataccgggaccgggaggatcgcgagagc
cggcgttccgatctggaacgcagcgtcgatgacaaggaacacaggcatcgtgacaagcac
cgggaatctcgtcatctcagggagagggagaaggagcgtgccaaggagagaaccaaagat
cgggaagagagggatagggataaagaagaaagggaaagggagaaggaggagagaacgagg
gagaaagaggagagggatagggagcgggaaaaagagaaggcccgggagcgggaggatcga
gaaagggagagggagagaaagagggaggagagagagcgagatagggaggagagggagaag
gaaagagaaagagagaaggagagagccagggagaagcggagggctctggacagcgacgag
gaagagtatgaacggaagcggcggcggagggagagctctcatgaccgtgatcgggagagg
agcagccacagacacggggagggcagcgaggatagcaggcggagccgggccaccgacaaa
gagtctgatgttaaggaaacaaagacccgtgaggaggtacttgaagaggagcagcggaaa
ttggatgaagaaatagacaagcggcggcggagagtccaagagtggcaggagatgcggagg
aagaaggaagaggaagagagggagaagatgggctctgagaatggcaaagaggatgaagcc
atgttgggaaagaattggactttggaaggagagtctgatgatgaggacgctcctccaaag
tctgataaggatatatctgttgatggggatggtctcaagctgaaagatgggaatgataat
gatgctatggacgccatggacgaggatgctgcgaatggacatattggtactaaggattct
gaaggaggaaatgatgatgacgaagatgaaattgatccacttgatgctttcatgaactct
atggtgcttccagaagtcgagaagctgcagagtgctgagatagctgccaagccccatgaa
aagaaaggtatcatgacaaaagcttctaaggaagcatttagtaatggtgatcggttaaga
aaaggtgagaagaatgcaatgggtaggataattcctggtgaggattctgattctgactat
gaggatcctgagaatgaggaggttgctcttgaagatgaagatgatgaagagttcatgaaa
agagtgaagaagacaaaggcagaaaagctttctattgttgatcactcaaagatacaatat
ccaccgttcaggaaaaatttgtacatagaattgaaggagatcgctaggatgtcaactgag
gaggtttcagcctatcggaagcagcttgaattgaagatacatgggaaggacgtgcccaaa
cctataaaaacttggagtcaagctggactgggtaccaaaattcttgatacaatcaagaaa
ctaagctttgaaaagcctatgtctattcaagcccaagctctccccatcattatgagtgga
cgagactgcataggaattgcaaaaactggttcaggtaagacactagcttttgttttgcca
atgctcaggcatatcaaagaccaacctgaggtggtgtctggtgagggccctgttggactc
gtcatggctcctaccagggagcttgttcaacagattcataatgacatcaagaaatttgca
aagccactaaacatcaactgtgtgccagtctatggaggttcaggtgttgctcagcagatc
agtgagctcaagcgagggactgagattgttgtctgcactcctggtcgaatgatagatata
ctttgcacaagtggtgggaaaattactaacctacgtagggtgacctttttggtaatggat
gaagccgatagaatgtttgacatgggctttgagcctcaaatcaccaggataatccagaat
acaaggccagatcgccaaacagttcttttttcagctacatttcctcgccaagtggaaata
ttagctcgcaaggtgttgaacaagcctgttgagatccaagttggtggaagaagtgtggtt
aacaaagatataactcaactagttgaggtcagaccagaaagtgacaggtttttacgattg
ctagaaatcctcggcgaatggtatgagaaggggaagattcttgtttttgttcattctcaa
gataaatgtgatgctctctttagggatttacttaagcatagttatccttgtctatccctt
catggtgctaaagatcagactgaccgtgaatctacaatatctgattttaaaaataacgtc
tgcaacttgttgattgctacaagtattgcagctagaggtttggatgtgaaagagcttgag
ctagttgtgaactttgacgttccaaatcactatgaagactatgttcaccgtgttggccga
actggacgagctgggcgaaaaggatgtgctatcacattcatttcactggaagatgaacgc
tatgctccagatttagtgaaagccttggaactttcagaacaagctgttccagcagatctg
aaggcattagctaatgccttcatggcaaaagtgaaccagggaacagagcaagctcatgga
actggttatggaggaagtggttttaaatttaatgaagaggaggatgaagcaaggaaagct
gctaagaaagctcaagcaagagaatatgggtttgaggaagataaatctgattcagactct
gaggatgaagggatcagaaaggctggtggtgatctgtcacaagctgtagtttctgcccat
gttgcagcattagctgcagtttcgaaggcagcaaatacctcaatgcctacccaggttgtc
accccattgccatttactgctgccctaccttctgcaaatctttccaatgtagctgctctg
tctgctgttccctctgtcactgctttgcctggtgaggctgctgctagagcgactgcaata
gctgctgctttaaatttgaagcacaatttggcaaagatacaagctgaagctatgcctgag
cactatgaagctgagttggagattaatgatttcccacagaatgctcggtggaagataaca
cacaaagagacattatggccaatttccgaatggacaggagctgcaattactactaggggt
caatactttccaccaggaaagattcctggtcctggagaacgcaaactctacttgtttatt
gaaggtcccactgagtcttcagttaagaaagccaaagctgaggtgaaaagagttcttgaa
gattacacagctcaagctttaaatctttctggtgcttcccagccgggcaagtattctgta
atttga
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