Zingiber officinale (ginger): 122001677
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Entry
122001677 CDS
T08725
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122001677
03015 mRNA surveillance pathway
122001677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122001677
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122001677
5.6.2.5 RNA 5'-3' helicase
122001677
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122001677
mRNA cycle factors
Common to processing body (P body) and stress granule
122001677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
UvrD-helicase
Helicase_RecD
ATPase
PhoH
AAA_16
SRP54
AAA_22
Hydin_ADK
AAA_25
Ribosomal_S13_N
AAA
Motif
Other DBs
NCBI-GeneID:
122001677
NCBI-ProteinID:
XP_042412490
LinkDB
All DBs
Position
7A:85820440..85840628
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AA seq
1272 aa
AA seq
DB search
MAAQSVNNLYETASQPDTGGDAYTFLEFNTQDDFDDYPQFQELSQPSRSPAWPHPPPPPE
PAPESPASDLQTPESTVLSPSASTPLGGPSSSSKARGAAGGQAAAPAVDTLAAGMSGLNF
EETGDEGYEFGKGNFTEHACRYCGVQNPACVVRCNIPTCRKWFCNSRGNTSGSHIVNHLV
RAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISATTESVVVLLCREPCLNVNALKD
MNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKLEELWKTNPDASLEDLE
KPGVDDEPQPVSLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVSVRWDVGLNKKR
VAYFVFPKEDNELRLVPGDELRLRYSGDTAHPAWQSVGHVIKLTAQEEVALELRASQGVP
VDLSHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEQQIVRNTLPRR
FGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP
SNVAVDQLADKISSTGLKVVRLCAKSREAVMSPVEHLTLHYQVRHLDTSEKSELHKLQLL
KDEQGELSSSDEKKFKALKRATEREILQSADVICCTCVGAGDPRLENFRFRQVLIDESTQ
ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGHKPFRLQV
QYRMHPCLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISSS
GTSYLNRTEAANVEKIVTTFLRSGVIPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKE
IEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLS
KQPLWNSLLTHYKEHECLVEGPLSNLKQSMVQFQKPKKIYSSRLYYGGGPGIVHSDNIGP
VGSSVPLSDKRGGHSKGHSFVPFGPPNGNSKPGMHPAGYPLSRVPLPPFPGGPHSQPYAI
PTRGAVHGPVGAIPQVPQPGNRGFGAGRGNAGGPIGGHLAHQQSSQQTSSGIGSVFNFPP
LDNPSSQPSVGAPASQTGLMTQMPVQGLSQTFRDGLSIGGMSQEFLADDFKSQGSHVAYN
MADFSTQASRSGYGVDYSTQGPQTGFPGTYINQNTQPGYSHLGTGHDYVFQEYMPHGSQG
LFTQAGFNDPSQDESSQSYFGVAGPSSLQSQQGLLNPLYSQPFPYYNVQTQTPQPPQQQN
QSSTNLKPHYNG
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcagtcggtcaacaacctctacgagacggcttcgcagccggacaccggcggc
gacgcgtacactttcctcgagttcaacacccaggacgacttcgacgactacccgcagttc
caggagctctcgcagccctcccgatcccccgcttggccccatcccccgccgccgcccgag
cccgcgccggagtcccccgcatccgatctgcagactcccgagtccaccgtcctgtcgcct
tccgcatcgacgcccctcggcggcccttcctcgtcctccaaggccaggggggccgctggc
ggccaggcggctgccccggcggttgataccctggcggctgggatgagcgggctcaacttt
gaggagactggggatgagggttacgagtttggcaagggcaattttacggagcacgcgtgc
cgttattgtggggtgcagaatccggcgtgtgtcgttaggtgcaacattccgacgtgcagg
aagtggttctgtaactcgcgggggaacacatcgggttctcatatcgtgaatcatctggtg
cgagcaaagcacaaggaagtttgtctacacaaggacagtccactaggagagactattctt
gaatgctataattgtggttgccggaatgtttttcttcttggatttatttctgctacgaca
gaaagtgtcgtcgttctcttgtgcagagaaccttgtttgaatgtcaatgcattaaaggac
atgaattgggatcttagtcaatggtgtccactcattgatgataggtgtttcctaccatgg
cttgttaaggtaccttcagaacaagaacaactgagagcacggcaaataagtgctcagcaa
attaacaaacttgaagagctatggaagaccaatcctgatgcttctttagaagatcttgag
aagcctggagttgatgatgaaccacaacctgtttcattgaagtatgaagatgcatatcag
taccaaaatgtatttgctccactgataaagcttgaagctgactatgataagatgatgaaa
gagtcacagagtaaagacaatgtcagtgtacgctgggatgttggccttaataaaaagcgt
gtagcctactttgtctttcctaaggaagataatgaactcagacttgttcctggagatgaa
ttacgtctgcgatactccggtgacacagctcatcctgcatggcaatctgttggacatgtg
attaagctaactgcacaagaagaggttgcacttgaacttcgtgcaagccagggagtccct
gtggatctgagtcatggctttagtgtggactttgtctggaaaagtactagctttgaccga
atgcaaggtgctatgaagacttttgcagtggatgaaaccagtgttagtggatacatatat
catcaccttttgggccatgaagttgaacaacaaatagttcgaaatactctacctcgccgg
tttggtgctcctggacttcctgaactaaatgcatcccaggtttttgctgttaagagtgtc
cttcagaaaccaataagtttgatacagggcccacctggtacaggaaagactgtcacatct
gctgcaattgtatatcacatggctaaacaagggcaaggacaggtcttagtatgtgctcca
agcaatgttgctgttgaccaactggcggataagataagttccacaggtttgaaggttgtc
aggctctgtgctaaatcaagagaagctgttatgtctcctgttgagcatctaacacttcac
taccaggtacgccatcttgatacatctgaaaaaagtgaacttcataagcttcagctgtta
aaagatgaacaaggcgaattatcaagcagtgatgagaagaaatttaaagcgctaaaacgg
gctactgaaagagagatattgcaaagtgctgatgttatttgttgtacatgtgttggtgct
ggagatccccgccttgaaaatttcagattccgccaggttcttattgatgaatctacacag
gcaacggagcctgagtgtcttattccattagttttaggtgttaaacaggttgttcttgtt
ggagatcattgccagcttggtccagttatcatgtgtaagaaggcagctcgtgctggattg
gcacagtctctctttgagcggcttgttcttcttggacacaaaccatttaggttgcaggtc
caataccgaatgcacccttgcctctctgaattcccttctaatagcttttatgaaggcaca
cttcagaatggagtgacaatcaatgagaggcaatcaactggcatcgattttccttggccg
gttcccaaccgtcctatgttcttctatgtgcagatgggacaagaggaaattagttcaagt
ggcacatcttatctcaatagaactgaggctgcaaatgtggaaaaaattgtcactacattc
ctaagaagtggtgtcatacctagtcagataggagttatcactccatatgaaggacaacgg
gcatatattgtgaattacatgtcaaggaatggtgcacttagacaacaactttacaaggaa
attgaggttgcaagtgttgactccttccaaggcagagagaaggattacattattctgtct
tgtgtgagaagcaatgagcatcagggtattggatttctcaatgatccacgtaggttgaat
gttgcattaactcgtgctcgttatggcattgtcattctcgggaatcccaaggttctaagt
aaacaacctctttggaatagtttgttaacacattacaaggagcacgagtgtctcgtagaa
ggaccactgagcaacttgaagcagagtatggtgcagtttcaaaagccaaaaaagatttac
agtagcagactctattatggcggtggtccggggattgttcacagcgataacattggtcct
gttggttcatcagttccactttctgacaagagaggtgggcacagtaaaggacattcattt
gttccatttggtccaccgaatggtaactctaaacctggcatgcatccagctggatatcca
ttgtctcgtgttcctcttccaccttttcccggaggtcctcattctcagccatatgctatt
ccaactcgtggtgctgttcatggacctgtaggagctattccgcaggtcccacagcctggt
aataggggttttggggctggtcgtggtaatgctggtggtcctattgggggtcacctagct
catcaacaaagttcccagcagacttcgagtggtattggctctgtttttaacttccctcca
ttagacaatccaagcagtcagccttctgttggggctccagcatcacaaactggattaatg
acacagatgccagttcaaggtctcagccaaacattccgtgatggactttctattggcgga
atgtcccaggaatttcttgcggatgattttaaaagccaaggatcacatgtcgcttacaac
atggctgatttttctacacaggcttctcggagtggatatggtgttgattattccactcaa
ggaccccagaccggttttcctggaacctacataaaccagaatacacaaccagggtattca
catttgggaactggtcatgattatgtttttcaggagtacatgcctcatggatcacaaggt
ctatttacccaagcgggatttaatgatccctcgcaagatgaatcttctcagagctatttt
ggcgtagctggacccagttcccttcagtcacagcagggccttctaaatccattatattca
cagcccttcccttattacaatgttcaaactcaaacaccgcagcctccgcagcagcaaaat
cagagctcaacaaacctgaagccacactacaatggctga
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integrated database retrieval system
