Zingiber officinale (ginger): 122010883
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Entry
122010883 CDS
T08725
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122010883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122010883
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122010883
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122010883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
122010883
NCBI-ProteinID:
XP_042423286
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Position
8A:60336507..60337097
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AA seq
196 aa
AA seq
DB search
MAVAVVNNNDMLISSSAFRTSASRVKVRSVWAHNLDEEFALIRSVVPFHPFVALDTEYPG
VVVASKNPYCTLTLSQRYELIRANVEALRIVQVGLTLSDASGNLPCAIYSDGTCVRYVWE
FNFRDFDISRDRYAPSSVELLKANGIDFQKNQVWGIDSCRFAQHLATSGLLSFGHFSPVS
WVTFQGAYDFAFLVTC
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgcagtcgtcaacaataacgatatgctaatttcctcttccgccttcagaacc
agcgccagcagagtcaaggttcgctccgtgtgggctcataacctcgacgaggagttcgcc
cttatccgctccgtcgtcccgttccaccccttcgtcgcattggacaccgagtatcctggc
gtcgtcgtcgcttccaaaaatccctactgcaccctcaccctctcccagcgctacgaattg
atccgcgccaacgtcgaggccctccgcatcgtccaggtcggtctcaccctctccgacgcc
tccggcaacctcccatgtgccatctacagcgatggcacttgtgtgcgttacgtgtgggaa
tttaatttccgcgacttcgacatcagccgcgaccgttacgccccttcctccgtcgagctg
ctcaaggctaatggcatcgacttccaaaagaatcaagtatggggcatcgactcttgcaga
ttcgcccagcacttggccacctccggcttgctttcctttggtcatttttctcccgtctcc
tgggttaccttccaaggcgcctatgacttcgccttcctagtgacatgctga
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