Zingiber officinale (ginger): 122012287
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Entry
122012287 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122012287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122012287
03009 Ribosome biogenesis [BR:
zof03009
]
122012287
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122012287
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
U1 related factors
122012287
Complex B
122012287
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Helicases
122012287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
122012287
NCBI-ProteinID:
XP_042424707
LinkDB
All DBs
Position
8A:8977518..8988254
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AA seq
1167 aa
AA seq
DB search
MATADAAPGSLGPQYAPDDPTLPKPWKGLIDSNTGFLYYWNPETNITQYEKPAASIPSLP
TSAPPSNSMHEIAQEYGLQTQPQQQPSQPSFQQKSQLTEQQQLLQQQQQQPPPPQQSQEP
STQHLQVQHPHGQQVLLQNTQMSIHQSHQLPIHQMAPQTSQQYLPINSQDGPYQHVPYLQ
GLLVQPPMVQQQHGFQFSHQQVQHLQGPPMTYQQGQQPQGSQELKIPNQQQQGQQTLRSR
TPPSQGYQVLHQETQHAIQVVQLQSQQSQGLQNGNQQSQQSQGQQHRFQRMEDALHQEGK
LGILPSSGVASAGHGLPDLVPQVGIPSGVGYTSQSPNHLGGTSMQNISPFEARNTGIEAN
FGIQQQRGTAISNPSSNPIVRPPVNGKTMFEEAEPEIPGNEFYPPAKLERSMMYPHQPRL
AALPIPKNHSGPGFRPHFDGPGLSVGVGISSQNAPPNMHNHTAIHNASVLRSSPGKLGPS
DFHNVSVADAYRKHHEITAMGNDVPPPFMTFEATGFPPEILREMHLAGFSSPTPIQAQTW
PVALQNRDIVAIAKTGSGKTLGYLIPAFIHLRCCRNNPQFGPTVLVLAPTRELASQIQDE
ALKFCRSSRISCACLYGGAPKGPQLKEIERGADIVIATPGRLNDFLEMKKISFRQVSLLV
LDEADRMLDMGFEPQIMKIVNEIPPHRQTLMYTATWPKEVRKIANDLLKNPVQVNIGNVD
ELVANKSITQHIEVVAPMDKQRRLEQILGTQERGSKIIIFCSTKRQCDQLARSLGRAFGA
ISIHGDKSQGERDHVLSQFRTGRAPILVATDVAARGLDIKDIRVVINFDFPTGIEDYVHR
IGRTGRAGATGVAYTFFTDQDWKHAGDLVKVLEGANQRVPLEIREMVGRGGPLLSRSRNE
PNRWDTGEGNGGGGGGRWNARGGRGGGRGGSMRDGPGGFGGRGSDMMRDGPGGFGGRGGR
QDFFGGRGPRGRGFGVPGGHGGRDRYEWSPHDRSLNSDGWKRYDGHNRGFGERRRERSYS
RSPEMVRTWGYDRSRGRSKNRSPSRSWSRSQSWSSRSRSRSRSRSRSRSRERVKRPSGWD
STPATGLFVTPGHEPPTNLGVAAAEAPHVTGPADALAPSRPEPNSIGSGPMLPISSGYDN
GSLSRNELPGQFPGPDSGSLRDVKHLN
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagcagatgctgcccctggttcattaggtccgcagtatgcacctgatgatccg
acacttccaaagccatggaaaggtttgatcgattcgaacactggcttcttatactattgg
aatccagaaactaacattacacaatatgagaaacctgctgcatctattccttcactgcca
actagcgctcccccttcaaactccatgcatgagattgctcaggaatatgggcttcaaaca
cagccacaacaacagcctagccagccatcatttcagcagaaaagccagttaactgagcag
cagcagctgctgcagcagcaacagcaacaaccaccaccaccacaacaatcacaagaacct
tcaactcaacatcttcaagttcagcatcctcatggtcagcaagtgctacttcagaatacc
caaatgtcaattcatcagtcacatcaattgccaattcaccagatggcaccacaaacatct
caacagtatttgccaattaattcacaggatggtccatatcagcatgttccttatctccaa
gggttgttggtgcaaccacccatggttcaacaacaacatggatttcagttttctcaccaa
caagtacaacatttacaaggtccaccaatgacttatcagcaggggcagcaaccacaaggt
tcacaagagttgaaaattccaaatcagcaacagcagggtcagcaaacactcaggtcacgg
actccaccttcacaaggataccaggttttgcatcaggagacccagcatgctatacaagtt
gtacaactacaaagtcaacagtcacagggtcttcagaatggaaaccaacagtcacaacag
tcacaagggcagcaacacaggtttcaaaggatggaagatgcactgcatcaggagggaaaa
ctaggcatacttccctcgtctggtgttgcatcagctggtcatggcctgccagatttggtt
cctcaggtgggtattccatctggggttggctacacttctcaatcacctaatcatctcggt
ggaactagtatgcaaaacatttcaccttttgaggcacggaatacaggaatagaagcaaat
tttgggatacaacaacagagaggcactgcaatttcaaatccatcatctaatccaattgtt
cgacctccggtaaatggaaagacaatgtttgaagaggccgaacctgaaattccaggaaat
gaattttatcctcctgctaaactggaaagatcaatgatgtacccacatcaaccaaggctt
gctgctcttcccattccaaaaaaccattcaggtccaggttttcgtcctcactttgatgga
ccaggtctctcagttggagtgggcattagttcacaaaatgcaccaccaaatatgcataat
catactgctattcataatgcaagtgtattgcggtcttcgccaggaaagttgggcccatca
gattttcacaatgtttctgtcgcagatgcatacaggaagcatcacgaaattactgcaatg
ggaaatgatgttcctccaccattcatgacatttgaagccactggtttccctccagagatt
ctcagagagatgcatctggctggattttcatctccaacaccaatacaagcacaaacatgg
cctgttgctttacagaacagggacatagttgcaattgccaaaactggttctggcaaaaca
ctaggttatcttatacctgcatttattcatctgagatgttgccgaaataatcctcagttt
ggaccaactgtattggttttggctccaactcgggagcttgcttctcaaatacaagatgag
gctcttaaattttgccgctcttcaaggatttcttgtgcatgcttatatggaggagctcca
aaaggtcctcaactgaaagagattgaacgaggagcagatattgtaattgcaactccgggt
cgcctcaatgatttccttgagatgaagaaaatcagcttccgtcaagtttcccttctggtt
cttgatgaagctgaccgcatgcttgatatgggttttgaaccacaaattatgaagattgtg
aatgagatccctcctcacaggcaaactcttatgtatacggcaacttggccaaaggaagtg
agaaaaatagccaatgatctgttgaagaatccagttcaggtgaatattggcaatgttgat
gaacttgttgcaaacaagtcaatcactcagcatatagaggttgttgccccaatggataaa
cagaggcgcttggaacagattcttggaactcaggaacgtggatctaagatcattatattc
tgttcaacaaagaggcagtgtgatcagctggcccgtagtctagggcgagcatttggtgct
atttccattcatggtgacaaatctcaaggtgaaagggatcatgttctatcccaattccgt
actggcagagctccaattctagttgccaccgatgttgctgccaggggacttgatatcaaa
gacatcagggtagttatcaattttgactttcctactgggattgaggactatgttcatagg
attggaaggacagggagggctggtgctacaggtgtagcatatacattcttcactgaccaa
gattggaagcatgctggtgatcttgtaaaagttcttgaaggtgccaatcagcgagttcct
cttgagattcgtgagatggttggtcgtggtggccctctgctgtccaggtctcgtaatgaa
cccaatcgttgggatacaggtgaaggcaatggtggtggtggtggtggtaggtggaatgct
agaggtgggcgcggaggtgggcgcggtggcagcatgagggatggtcctggtggctttggt
gggcgtggcagtgacatgatgagggatggtcctggtggctttggtgggcgtggtgggagg
caagatttctttggtggtcgtgggcctagaggtcgtgggtttggtgtgccaggtggacat
ggaggtcgggatcggtatgaatggagtccacatgatcgaagcctaaattcggatggatgg
aagcgttatgatgggcataataggggatttggagaaaggagaagggagagaagttatagc
cgtagtccagagatggttcggacatggggttatgatagaagcagaggcagaagtaaaaac
aggagtccaagccgcagttggagtcggagtcagagttggtcatcaagaagcagaagcagg
agtaggagtaggagtaggagtaggagccgtgagagggttaagaggcctagtggctgggac
tctactcccgctactggtctctttgtaacaccaggtcatgaacctccaactaatcttggt
gtagctgcagctgaagctccacatgttactggaccggcagatgcacttgcaccttcacgg
cctgaacccaattcaattggctcagggcctatgttgccgatatcatctggatatgataat
ggatctttatcgagaaatgaactgccaggacaatttccagggccggacagtgggagcctc
agggatgtcaagcacctcaactag
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integrated database retrieval system
