Zingiber officinale (ginger): 122017260
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Entry
122017260 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122017260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122017260
03009 Ribosome biogenesis [BR:
zof03009
]
122017260
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122017260
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
U1 related factors
122017260
Complex B
122017260
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Helicases
122017260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
122017260
NCBI-ProteinID:
XP_042430755
LinkDB
All DBs
Position
8B:7011537..7022470
Genome browser
AA seq
1175 aa
AA seq
DB search
MATADAAPGSLGPQYAPDDPTLPKPWKGLIDSNTGFLYYWNPETNITQYEKPATSIPSLP
TSAPPSNSMHKIAQESGLQTQPQQQPSQPSFQQKSQLIEQQQLQQQQQQPPPPQQSQEPS
TQHLQVQHPHGQQVLLQNTQMSIHQSHQLPIHQMAPQTSQQYLPINSQDGPYQHVPYLQG
LLVQPPMVQQQHGFQFSRQQVQHLQGPPMTYQQGQQPQGSQELKIPNQQQQGQQTLGSRT
PPPQGYQVLHQETQHAIQVVQLQSQQSQGLQNGNQQSQQSQGQQHRFPRMEDALHQEGKL
GILPSSGVASAGHHLPDLVPQVGIPSGVGCTSQSPNHLGGTSMQNISPFQALNTGIEANF
GIQQQRGTAISNPSSNPIVRPPVNGKTMFEEAEPEIPGNEFYPPAKLERSMMYPHQPRLA
ALPIPKNHSGPGFRPHFDGPGLSVGVGISSQNAPPNMHDHTAIHNASVLRSSPGMLGPSD
FHNVSVADAYRKHHEITAMGNDVPPPFMTFEATGFPPEILREMHLAGFSSPTPIQAQTWP
VALQNRDIVAIAKTGSGKTLGYLIPAFIHLRCCRNNPQFGPTVLVLAPTRELASQIQDEA
LKFCRSSRISCACLYGGAPKGPQLKEIERGADIVIATPGRLNDFLEMKKISFRQVSLLVL
DEADRMLDMGFEPQIMKIVNEIPPHRQTLMYTATWPKEVRKIANDLLKNPVQVNIGNVDE
LVANKSITQHIEVVAPMDKQRRLEQILGTQERGSKIIIFCSTKRQCDQLARSLGRAFGAV
SIHGDKSQGERDHVLSQFRTGRAPILVATDVAARGLDIKDIRVVINFDFPTGIEDYVHRI
GRTGRAGATGVAYTFFTDQDWKHAGDLVKVLEGANQRVPLEIREMVGRGGPLLSRSRNEP
NRWDTGEGNGGGGGGRWNSRGGRGGGRGGGMRDGPGGFGGRGSDMMRDGPGGFGGRGGRQ
DFFGGRGPRGRGFGGPGGHGGRDRYEWSPHDRSLNSDGWKRYDGHNRGFGERRRERSYSR
SPEMVRTWGYDRSRGGSKNRSPSRSRSRSRSRSRSPSQSWSSRSRSRSRSRSRSRERVKR
PSGWDSTPATGLFATPGHEPPTNLGVAAAEAPHVTGPADALAPSLVAGPEPNSIGSGPML
PISSGYDNGSLSSNELPGQFPGPDSGRLRDVKHLN
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagcagatgctgcccctggttcattaggtccgcagtatgcacctgatgatccg
acacttccaaagccatggaaaggtttgatcgattcgaacactggcttcttatactattgg
aatccagaaactaacattacacaatatgagaaacctgctacatctattccttcactgcca
actagcgctcccccttcaaactccatgcataagattgctcaggaatctgggcttcaaaca
cagccacaacaacagcctagccagccatcatttcagcagaaaagccagttaattgagcag
cagcagctgcagcagcaacagcaacaaccaccaccaccacaacaatcacaagaaccttca
actcaacatcttcaagttcagcatcctcatggtcagcaagtgctacttcagaatacccaa
atgtcaattcatcagtcacatcaattgccaattcaccagatggcaccacaaacatctcaa
caatatttgccaattaattcacaggatggtccatatcagcatgttccttatctccaaggg
ttgttagtgcaaccacccatggttcaacaacaacatggatttcagttttctcgccaacaa
gtacaacatttacaaggtccgccaatgacttatcagcaggggcagcaaccacaaggttca
caagagttgaaaattccaaatcagcaacagcagggccagcaaacactcgggtcacggact
ccacctccacaaggatatcaggttttgcatcaggagacccaacatgctatacaagttgta
caactacaaagtcaacagtcacagggtcttcagaatggaaaccaacagtcacaacagtca
caagggcagcaacacaggtttcctaggatggaagatgcactgcatcaggagggaaaacta
ggcatacttccctcgtctggtgttgcatcagctggtcatcacctgccagatttggttcct
caggtgggtattccatctggggttggctgcacttctcaatcacctaatcatctcggtgga
actagtatgcaaaacatttcaccttttcaggcactgaatacaggaatagaagcaaatttt
gggatacaacaacagagaggcactgcaatttcaaatccatcatctaatccaattgttcga
cctccggtaaatggaaagacaatgtttgaagaggctgaacctgaaattccaggaaatgaa
ttttatcctcctgctaaactggaaagatcaatgatgtacccacatcaaccaaggcttgct
gctcttcccattccaaaaaaccattcaggtccaggttttcgtcctcactttgatggacca
ggtctctcagttggagtgggcattagttcacaaaatgcaccaccaaatatgcatgatcat
actgctattcataatgcaagtgtattgcggtcatcgccaggaatgttgggcccatcagat
tttcacaatgtttctgtcgcagatgcatacaggaagcatcacgaaattactgcaatggga
aatgatgttcctccaccattcatgacattcgaagccactggtttccctccagagattctc
agagagatgcatctggctggattttcatctccaacaccaatacaagcacaaacatggcct
gttgctttacagaacagggacatagttgcaattgccaaaactggttctggcaaaacacta
ggttatcttatacctgcattcattcatctgagatgttgccgaaataatcctcagtttgga
ccaactgtattggttttggctccaactcgggagcttgcttctcaaatacaagatgaggct
cttaaattttgccgctcttcaaggatttcttgtgcatgcttatatggaggagctccaaaa
ggtcctcaactgaaagagattgaacgaggagcagatattgtaattgcaactccgggtcgc
ctcaatgatttccttgagatgaagaaaatcagcttccgtcaagtttcccttctggttctt
gatgaagctgaccgcatgcttgatatgggttttgaaccacaaattatgaagattgtgaat
gagatccctcctcacaggcaaactcttatgtatacggcaacttggccaaaggaagtgaga
aaaatagccaatgatctgttgaagaatccagttcaggtgaatattggcaatgttgatgaa
cttgttgcaaacaagtcaatcactcagcatatagaggttgttgccccaatggataaacag
aggcgcttggaacagattcttggaactcaggaacgtggatctaagatcattatattctgt
tcaacaaagaggcagtgtgatcagctggcccgtagtctagggcgagcatttggtgccgtg
tccattcatggtgacaaatctcaaggtgaaagggatcatgttctatcccaattccgtact
ggcagagctccaattctagttgccaccgatgttgctgccaggggacttgatatcaaagac
atcagggtagttatcaattttgactttcctactgggattgaggactatgttcataggatt
ggaaggacagggagggctggtgctacaggtgtagcatatacattcttcactgaccaagat
tggaagcatgctggtgatcttgtaaaagttcttgaaggtgcaaatcagcgagttcctctt
gagattcgtgagatggttggtcgtggtggccctctgctgtccaggtctcgtaatgaaccc
aatcgttgggatacaggtgaaggcaatggtggtggtggtggtggtaggtggaattctaga
ggtgggcgcggaggtgggcgcggtggcggcatgagggatggtcctggtggctttggtggg
cgtggcagtgacatgatgagggatggtcctggtggctttggtgggcgtggtgggaggcaa
gatttctttggtggtcgtgggcctagaggtcgtgggtttggtgggccaggtggacatgga
ggtcgggatcggtatgaatggagtccacatgatcgaagcctaaattcggatggatggaag
cgttatgatggacataataggggattcggagaaaggagaagggagagaagttatagccgt
agtccagagatggttcggacatggggttatgatagaagcagaggcggaagtaaaaacagg
agtccaagccgcagtcggagtcggagtcggagtcggagtcggagtccgagtcagagttgg
tcatcaagaagcaggagtaggagtaggagtaggagtaggagccgtgagagggttaagagg
cctagtggctgggactctactcccgctactggtctctttgcaacaccaggtcatgaacct
ccaactaatcttggtgtagctgcagctgaagctccacatgttactggaccggcagatgca
cttgcaccttcactggtcgcagggcctgaacccaattcaattggctcagggcctatgttg
ccgatatcatctggatatgataatggatctttatcgagcaatgaactgccaggacaattt
ccagggccggacagtgggagactcagggatgtcaagcacctcaactag
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