Zingiber officinale (ginger): 122017294
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Entry
122017294 CDS
T08725
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122017294
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122017294
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
v110
Motif
Other DBs
NCBI-GeneID:
122017294
NCBI-ProteinID:
XP_042430797
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Position
1A:complement(8690944..8692564)
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AA seq
414 aa
AA seq
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MAALMVLFLLALLSCNVLCSSSRTLPSKSIAAAAAVEDPELVVQEVQRSLNMSRRELGYL
SCKTGNPIDDCWRCDPGWAKNRQRLADCAIGFGKNAIGGRDGDIYVVTDSGDDDPVNPKP
GTLRYAVIQEEPLWIVFDHDMTIKLKEELLMNSYKTLDGRGANVHIAGGPCITVQYVSNV
IIHGLHIHDCKQGGNANVRDSPGHYGWRTLSDGDGVSIFAGAHVWVDHCTISSCRDGLVD
AIHGSTAITVSNNYFSHHDKVMLLGHSDDLAADKSMQVTIAFNHFGEGLVQRMPRCRHGY
FHVVNNDYVHWEMYAIGGSAAPTINSQGNRFLAPNDQFAKEVTKREEAAESEWKKWNWRS
EGDLMLNGAFFTPSGAGASSSYAKASSLSARSSSVVDALTAAAGALTCKKGSRC
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcagcactcatggtgctcttcctcctcgccttgttgtcctgcaacgttctctgctct
tcttctcgcactttgccttcgaaatcaattgcggcggcggcggctgttgaagatcctgag
ttagtcgtacaagaggtgcaaaggagtttgaacatgtcgcggcgggaactggggtacttg
tcgtgcaagaccgggaacccgatcgacgactgctggcggtgcgatccggggtgggccaag
aaccggcagcggctggcggactgcgcgattgggttcgggaagaacgcgatcggcggccgc
gatggtgacatttacgtggtgactgacagcggcgacgacgaccctgtgaaccccaagccg
gggacgctgcggtacgcggtcatccaagaagagccgctctggatcgtcttcgaccacgac
atgaccatcaagctcaaggaggagctgctgatgaactcttacaagaccctcgacggccgc
ggcgccaacgtgcacatcgccggcgggccctgcatcacggtgcagtacgttagcaacgtc
atcatccacggcctccacatccacgactgcaagcaaggcgggaacgcgaacgtgcgcgac
tctccggggcactacggatggcgcacgctgtcggacggcgacggcgtgtccatcttcgcc
ggcgcccacgtgtgggtcgaccactgcacgatctccagctgccgcgacgggctggtggac
gccatccacggatccaccgccatcaccgtctccaacaactacttcagccaccacgacaag
gtgatgctgctggggcacagcgacgacctcgccgccgacaagagcatgcaggtcaccatc
gccttcaaccacttcggcgaaggcctcgtgcagaggatgccaaggtgtcgccatggctac
tttcacgtggtgaacaacgactacgttcattgggagatgtacgcgatcggagggagcgcg
gcgccgacaataaacagccaaggaaacaggttcctcgcacccaacgatcagttcgccaag
gaggtgaccaagcgggaggaggcggcggagagcgagtggaagaagtggaattggaggtcg
gaaggagatctgatgctgaacggagccttcttcacgccgtcgggggccggagcatcgtcg
agctacgcgaaagcgtcgagcttgagcgcgcggtcgtcgtcggtggtcgacgcgttaacg
gcggctgccggcgcgctcacgtgcaagaaaggctcccgttgttga
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