Zingiber officinale (ginger): 122028588
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Entry
122028588 CDS
T08725
Name
(RefSeq) serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like
KO
K03456
serine/threonine-protein phosphatase 2A regulatory subunit A
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122028588
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122028588
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122028588
03036 Chromosome and associated proteins [BR:
zof03036
]
122028588
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
122028588
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
122028588
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
122028588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT
HEAT_2
HEAT_EZ
Vac14_Fab1_bd
Htt_N-HEAT_1
PDS5
CLASP_N
Cnd1
CEP104-like_TOG
TAF6_C
DUF3102
Motif
Other DBs
NCBI-GeneID:
122028588
NCBI-ProteinID:
XP_042443364
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All DBs
Position
10B:complement(80583013..80618076)
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AA seq
587 aa
AA seq
DB search
MAMIEEPLYPIAILIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
DEVLLAMAEELGVFIPYVGGIEYAHVLLPPLETLCTVEEACVRDKAIKSLCRIGAQMKES
DVVEWFIALVKRLASGEWFTARVSCCGLFHIAYPSATELLKAELRSIYGQLCQDDMPMVR
RSAASNLGKFAAMVEPNNLKTDIMCVFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGSEPTSSYLVPAYVRLLRDNEAEVRIAA
AGNVTKFCWILNSQLAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL
PIFLSMLKDEFPDVRLNIISKLEQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
IPLLASQLGIGFFNDKLGALCMQWLEDKVFSIREAAANNLKRLAEEFGPEWAMQHIVPQL
LDKINNQHYLHRMTILQAISLLAPVLGSSITWQKLLPVIITASKDGVPNIKFNVAKILQL
LIPIFDYSVVEQTVRPCLVELSEDPDVDVRYFANQALQSCDSVMMSS
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggctatgattgaggagccattgtatccaattgccatcttgatagatgagttgaaaaat
gaagacatacagctgcgcttaaattccattcgcaggttatctaccattgcacgtgcactt
ggggaagaaagaactagaaaagaactgataccctttctaagtgaaaacaatgatgatgat
gatgaggtgcttcttgccatggctgaagagttgggggtgttcattccatatgtgggtggt
atagaatatgctcatgttttgctccctcctctggaaacattatgcacggtggaggaagct
tgtgttagagacaaagcaattaaatctctttgtaggattggggctcagatgaaggaaagt
gatgtggtggagtggttcattgccttagtaaagagactagcttctggtgagtggttcact
gccagggtttcttgttgtggattgtttcacattgcttatccaagtgcgactgagttactc
aaggcagaattgcggtctatatatgggcaattatgtcaagatgatatgcctatggttaga
agatctgctgcatcaaatcttggaaaatttgctgctatggttgaaccaaacaatctgaag
acagatatcatgtgtgtattcgatgacctaactcaagatgatcaagattcagtccgcctg
ttggctgttgagggctgtgctgcccttgggaagttattggaaccacaagattgtgttgcg
cacattcttccagtcattgttaatttctcccaggataaatcatggcgtgtgcgctatatg
gttgctaatcagttatatgaactttgtgaagctgttggatctgaacctacaagctcttat
ttggtgcctgcttatgtacggcttcttcgagataacgaggctgaagtgcgtatagctgct
gctggaaatgtgactaaattttgctggatcttgaactctcaacttgcaatccagcatatt
ctcccttgtgtgaaggaattatcatctgattcttcccagcatgtacgctcggctttggct
tcggttattatgggaatggctccagtcttggggaaggatgctactattgaacaacttctt
cctatttttctgtctatgctcaaagacgaattcccagatgttcgactcaatatcattagc
aaacttgagcaagttaatcaggtaattggaattgatctgctttcccagtctttgctgcca
gctattgttgagcttgcagaagatagacactggcgagttcggcttgccataattgagtat
atccctctgttggcgagtcagttgggaattggttttttcaatgataaacttggtgctctt
tgcatgcagtggcttgaagataaggtcttctctattcgagaggcagctgctaataactta
aagcgtctcgctgaggaatttggcccagaatgggcaatgcaacacatagtgccacagttg
ctggataaaataaacaaccaacattatctgcatcgcatgaccattctacaagcaatctct
cttctagctcctgtcttgggttctagtataacttggcaaaagcttttgcctgtaatcatt
actgcctcaaaggacggggttccaaacattaaattcaatgtggcgaagatcctccagttg
ctcatacctatatttgactactctgtggtggagcagactgtccgcccatgtcttgttgaa
cttagcgaggacccagacgtcgatgtgaggtattttgccaaccaagcacttcagtcttgt
gattcagtgatgatgtcaagctag
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