Zingiber officinale (ginger): 122031104
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Entry
122031104 CDS
T08725
Name
(RefSeq) protein LHY-like isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
122031104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122031104
Transcription factors [BR:
zof03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
122031104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
122031104
NCBI-ProteinID:
XP_042446118
LinkDB
All DBs
Position
11A:19963287..19973416
Genome browser
AA seq
703 aa
AA seq
DB search
MEGNSSDEELSVIKKRKPYTITKQREKWTQEEHTRFLEALKLYGRAWQRIEEHIGTKTAV
QIRSHAQKFFTKLEKEAVEKGIAPGQVHDIDIPPPRPKRKSSSPYPRKSSIGTLALEEAM
SRKPEKSMPLLGENQVIDIKSDSSGEKLMAIQKLSRKRISEDANCSEVVNAFKDAKSNSI
SSLNKISSSHSAFIEFLPTTKEIMAEKIATNKSSAPLENSKSFIEEETEGRLRKFSQQQS
NLGLEDEGKTSKLEGLTILDSSKGDQANANKSTMHVSNCRQSMQIDASDSQNPFSLTDQV
GDEANGSLASTIPVQDASTISYFHQPHTASVPLTHLHDDQDVYRSFFNSSTFPSLIVSTL
LQNPAVHAAANLAASFCPSTVLPSTQYIPEAHNAHMNPTPSLEAIAAATVSAAAAWWATQ
GLLPCFPPLAGFAFSPPNINVPCTGISLPVHVTADDNFPKEMQQIEDQHKSEAIKPQHAS
SKSMSSSSSGSDDCDGRDEISKELKDTGSSKIKTLAAHRSSDLDKAMNQKKVDRSSCGSN
TASSSEVETYTMEKKHEKVNDEGKKDYDNFSKCGFNNYRLRSSGSLNESLKVSSEGRLAF
QALFDREVLPQSFSPPQTEKATTLRKKETSESKVNHKNTVCCSTNLNQQGDKSKEEMYIV
HEKRKVHQSGFKPYRRCSVEAESNALAEGAGSKRIRLQGEASS
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggaagggaactcctccgatgaagagttgagtgttattaagaaaaggaagccgtatacg
atcactaagcaaagggagaagtggactcaggaagagcacacccgctttcttgaagctttg
aaactctatgggagagcatggcaacgcattgaagaacatattggcacaaagacggcagta
caaattaggagtcatgcacaaaagttcttcaccaagcttgaaaaagaagcagttgagaaa
ggtattgccccaggacaagttcatgatatagatatacctcctccaagacctaaaagaaaa
tcaagcagtccatatccaagaaagtccagcattggcactctcgctttggaagaagcaatg
agcagaaaaccagaaaaatcaatgcctctccttggcgaaaatcaagtaatagacatcaaa
agtgattcttctggagagaagttaatggcaatacagaaattatcaagaaaaaggatttca
gaagatgccaattgctcagaagttgttaatgcatttaaagatgcaaaatctaattccatc
tcttctttaaacaagatctcttccagccatagtgcatttattgaattcttgccaactact
aaggagataatggcggagaagattgcaactaacaagtcttcagctcctcttgaaaatagt
aaatcttttatagaagaagaaactgaaggacgcctaagaaagttttcacagcagcaaagc
aatttgggtctagaagatgaaggaaaaacatcaaaacttgaagggctcacaatactagat
tcatctaaaggtgatcaagccaatgcaaataagtctactatgcatgttagcaattgtaga
cagagcatgcaaattgatgcatctgatagccagaaccctttttcactaactgaccaagta
ggtgacgaagcaaatggaagcctggcttctactataccagtccaggatgcatcgacaatc
agttattttcatcagccgcatacagcctctgtacctcttacccatctccacgatgatcaa
gatgtgtataggtcattcttcaactcatccacatttccaagtcttattgtttctaccttg
ctacaaaatccagcagttcatgctgcagcaaaccttgccgcatcattctgcccatctaca
gtgcttccttcaacccagtatatcccagaagctcataatgcacatatgaatccaactcca
agcttggaggctatagctgctgctacagtttctgctgcagctgcttggtgggcaactcag
ggtctattgccgtgttttcctcctcttgctggttttgcattttctcctccaaacataaat
gttccctgtacaggcatatcacttccagttcatgttacagctgatgacaattttccaaaa
gagatgcagcaaattgaagatcaacataagtctgaggctataaaacctcagcatgcctct
tctaaatcaatgtcatcgtcttcttctggctctgatgattgtgatggaagagatgagatt
tctaaggaacttaaagacactggatccagcaagataaagacattagcagctcacagatct
tctgatttagataaggctatgaatcagaagaaagtggatcgctcttcttgtggatccaat
acggcatcaagtagtgaagtagaaacatacaccatggagaagaaacatgaaaaagtgaat
gacgaggggaaaaaagactacgacaatttttcaaaatgtgggttcaacaattacaggctc
agaagtagcggaagtttaaatgaatccttgaaggtctcttcagagggtcgactagccttc
caagcattgtttgatcgagaagtacttccacaaagtttttcacctccacaaactgagaaa
gctaccactttgagaaagaaggaaaccagtgaatcaaaagttaatcacaagaacaccgta
tgttgttcaactaatctgaaccaacaaggcgacaagtcaaaggaagaaatgtatatagta
catgaaaagcgcaaggttcatcaatcagggtttaagccttataggaggtgttcagtagaa
gctgaaagcaacgcattagctgaaggagctggtagcaaaaggattcgtctgcaaggagaa
gcttcctcttga
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