KEGG T08725: 122034042

Zingiber officinale (ginger): 122034042

Entry

122034042         CDS       T08725

Name

(RefSeq) probable CCR4-associated factor 1 homolog 11

K12581

CCR4-NOT transcription complex subunit 7/8

Organism

zof Zingiber officinale (ginger)

Pathway

zof03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:zof00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122034042
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zof03019]
    122034042
Messenger RNA biogenesis [BR:zof03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     122034042
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     122034042

SSDB

Motif

Pfam:

CAF1

Other DBs

NCBI-GeneID:

122034042

NCBI-ProteinID:

XP_042449112

LinkDB

Position

11B:74408953..74409843

AA seq 296 aa
MAVAVVNNVNDMLISSSAASTSRVEVRSVWAHNLDEEFALIRSAVPFHPFVALDTEYPGV
VVASKNPYCTLTLPQRYELIRANVEALRIVQGGLTLSDAAGNLPCTIYSDGTCVRYVWEF
NFRDFDISRDRYAPSSVELLKANGIDFQKKQIWGIDSCRFAQHLATSGLLSFGHFSPVSW
VTSQGAYDFAFLVKMLTCDCKLPKTVREFLHLVHFFFGKRVFDVKHLSKHCPGLYGGLER
VASTVRVERAVGSRHQSGSDSLLTWQVFYQIASRVNPQLIHRPEHMGTLFDLQLQL

NT seq 891 nt +upstreamnt +downstreamnt
atggctgtcgcagttgtcaacaacgttaacgatatgctaatttcctcttccgccgccagc
accagcagagtcgaggttcgctccgtgtgggctcataacctcgacgaggagttcgccctt
atccgctccgccgtcccgttccaccccttcgtcgcattggacaccgagtatcctggcgtc
gtcgtcgcttccaaaaatccctactgcaccctcaccctcccccagcgctacgaattgatc
cgcgccaacgtcgaggccctccgcatcgtccagggcggtctcaccctctccgacgccgcc
ggcaacctgccatgtaccatctacagcgacggcacttgtgtgcgttacgtgtgggaattt
aatttccgcgacttcgacatcagccgcgaccgttacgccccttcctccgtcgagctgctc
aaggctaatggcatcgacttccaaaagaaacaaatatggggcatcgactcttgcagattc
gcccagcacttggccacctccggcttgctttcctttggccatttttctcccgtctcctgg
gttacctcccaaggcgcctatgacttcgccttcctagtcaagatgctgacatgcgactgc
aaattaccaaagaccgttcgtgagttcttgcaccttgttcatttctttttcggcaaaagg
gtgttcgatgtgaagcaccttagcaagcattgtcctgggctttacggaggattggagcgg
gtggcctctaccgtccgagttgagcgagcagtcggctctcgacatcagtccggctccgat
agcttattaacatggcaggtgttctaccaaatcgcttctcgtgtgaatccacaactcatc
catcgtccagaacacatgggaacactatttgacctccaactgcaattatag

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