Zingiber officinale (ginger): 122036388
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Entry
122036388 CDS
T08725
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122036388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122036388
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122036388
Spliceosome [BR:
zof03041
]
Complex C
Other components
Step II factors
122036388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
AAA_16
Sigma54_activ_2
ABC_tran
TsaE
T2SSE
Flavi_DEAD
SLFN-g3_helicase
PhoH
AAA_33
Motif
Other DBs
NCBI-GeneID:
122036388
NCBI-ProteinID:
XP_042451617
LinkDB
All DBs
Position
Unknown
AA seq
1137 aa
AA seq
DB search
METLKELERLSLLSNICTELESHVGSGDKILAEFIADLGRNCETVDEFEAKLKEFGAGDL
PDYLVRSLITMIHAILPPTFKTGKKSTPDDDEKLSAFPALCRPDDRDRGRERDRGEIHRN
DRDRERDSGRDRDRNPDWNRDRDRERDRRWKKHSYYRVHDEDEEEEQHRERRHPAQPRRT
SDEPELYAIYKGRVSRVMDAGCFIQLNDLGGKEGLVHISQIANRRIANAKDAVKRNQEVY
VKVISVSGQKLSMRDVDQKTGKDLLPMRKSSQNEAYMANPVSGNGGPMRRLGLSGITIVE
ENEDRLSTKRLKRMSSPERWEAKKLIDVGVMNVHEYPMLNDDQDGILYQEEGAEEEIGIE
LNEDKPSFLQGQSRYSIDMSPVKIFKNPEGSLGRAAALQSALIKERRELREQQQRTMLDS
IPKDLNRPWEDPMPETGERHLAQELRGVGLSAYEMPEWKKDAYGKTVTLGQRSKLSMQEQ
RQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRV
AAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREILVDETLSQYSV
IMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRT
FPVEILYAKQPEIDYLDAALITVLQIHLTEPEGDVLLFLTGQEEIDHACQSLYERMKGLG
KNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAK
QNVYNPKLGLDSLVITPISQASAKQRAGRAGRTGPGKCFRLYTEGAYCNEMSPTTIPEIQ
RINLGMTTLNMKAMGINDLLSFDFMDPPSPSALISAMEQLYSLGALDEEGLLTKLGRKMA
EFPLDPPLSKMLLASVDLGCSDEILTIIAMISTGNIFYRPREKQAQADQKRAKFFQPEGD
HLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRKAQDVRKQLLTIMDRYKLDVVSAGKNFT
KIRKAITAGFFFQAARKDSREGYRALVENQTVFIHPSSALFQRQPDWVIYHELVMTTKEY
TREVTVIDPKWLVELAPRLYKSSDPNRMSKRKRQERIEPLYDPYHEPNSWRLSKRRA
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggagactttgaaggagctggaacgcttatctttgctctccaatatatgcacggaactc
gagtcccacgttggctccggcgacaagatattggcagagttcatcgccgatctcggccgc
aactgtgagaccgtcgatgagtttgaagctaagctaaaggagtttggggctggcgatctg
cctgactacctcgttcgctccctcatcaccatgatccacgccatccttccccccacgttc
aagaccggcaagaaatccactcctgatgacgacgagaaattatccgccttccccgctctc
tgccgcccagatgaccgcgataggggtcgcgaacgtgaccggggtgaaatacacagaaat
gatcgtgatagggaaagagatagcggcagagatagagatcggaatccagattggaacaga
gatcgggacagagagagggatcgtagatggaagaagcacagctactatagagttcatgac
gaagatgaagaggaggagcagcacagagagaggaggcatccagctcaaccgcgcagaact
tctgatgaaccagagctttacgcaatatacaaaggaagagtttcgcgggttatggacgca
gggtgcttcatccagctgaacgacttggggggaaaggaaggtctggttcatatctcccag
attgccaataggaggattgccaatgcaaaggatgcagttaagaggaaccaagaagtttat
gtgaaggtcatttcagtgtcagggcagaagctatccatgagggatgtagatcagaaaact
ggaaaagatcttcttccgatgaggaagagctcacaaaatgaagcttatatggcaaatcca
gtaagtggaaatggaggcccgatgaggaggttaggtctttcagggattactattgtagag
gagaatgaagacagactatcaacgaagcgactcaagagaatgagctcacctgagagatgg
gaggcaaagaagctcattgatgttggtgttatgaacgtccatgaatatccaatgctcaat
gatgatcaggatggaatcttgtatcaagaagagggtgctgaggaggagatagggattgag
ctcaatgaggataaaccttccttcttgcaggggcagagtcgttattcaattgacatgtca
cctgtcaaaattttcaagaacccggagggatctttgggaagagcagctgcgctgcagtcg
gccctcatcaaggagagaagggagttaagggagcagcagcagaggacaatgctagattca
attcccaaagatctcaatcgtccgtgggaagatccaatgccggaaactggcgagcggcat
cttgcacaggaacttaggggagtgggattgtcagcatatgagatgccggagtggaagaaa
gatgcttatggaaaaactgtaacgcttgggcagagatcaaagttgtcaatgcaggaacaa
aggcagagccttcctatttataaattgaaaaaagagttggttcaagctgtgcacgacaat
caggttcttgttgtgattggtgagaccggctcaggaaagacaacacaggtgactcagtat
cttgctgaggcaggatacacaacaagagggaaaattgggtgcacacaacctcgaagggtg
gcagctatgtctgttgcaaagcgggtggctgaagaatttggttgtcgcctgggtgaggag
gttggttatgctattaggtttgaagactgtactggccctgagactgtgatcaaatacatg
acagatggtatgcttctccgggagattttagttgatgaaactctatcacagtactcagta
attatgttggatgaagctcatgaaaggaccatccatactgatgttctctttgggttgcta
aagcagcttgtgaagcgaagaccagaccttcggttgattgtgacatctgctacgctggat
gcagagaaattctctggctacttctttaactgcaacattttcaccattccgggaagaact
ttcccagtggagatactttatgccaagcaaccggaaattgattatttggatgcagcactt
atcactgttttgcagatacacttgacagaacctgaaggagatgtacttctcttcttgact
ggccaagaagagattgatcatgcctgccagtctctgtatgagagaatgaaagggttagga
aaaaatgtgcctgagttgataatcttgccggtatacagtgcacttcccagtgaaatgcag
tccagaatttttgatcctgctcctcctgggaagcggaaagtggttgtggctaccaacatt
gcagaagcttccttgaccattgatggtatttactatgtcgtggatcctggctttgctaaa
caaaatgtctacaacccgaagcttgggcttgattcactggttattacacccatctcacaa
gcttctgcaaagcagcgagctggtcgtgctgggcgtacaggtcctggtaaatgtttccga
ctatatacagagggtgcttactgcaacgaaatgtctccaacaacgattccagaaatccag
aggatcaatcttggtatgacgactctcaatatgaaggctatgggtataaatgacttgcta
tccttcgatttcatggatcctccatcaccttctgccctcatatctgcgatggaacaacta
tatagtcttggagcccttgatgaggaagggctcctgacaaaattgggtagaaaaatggct
gagtttccattggatcctcctttatcaaaaatgcttctcgctagtgtggaccttggatgc
agtgatgaaattttgactattatagcaatgatttcgactgggaacattttctacagaccg
agagagaaacaagcccaggcagatcaaaaaagagcaaaattctttcagccagaaggggat
cacttaacactgcttgctgtatacgaggcgtggaaagctaaaaacttttcagggccttgg
tgctttgagaattttgtgcagtcccgttcgcttagaaaggctcaggatgtgaggaaacag
cttcttactatcatggacagatacaagcttgatgttgttagtgctggaaaaaatttcaca
aagataaggaaggcgattacagcgggtttcttctttcaagcagccaggaaggactcccga
gaaggctacagggcactagtggaaaatcaaaccgtgtttatccaccccagcagtgcacta
tttcaaaggcaaccagactgggtgatctatcatgagcttgtcatgacaaccaaggaatac
acgagggaagttacggtcatcgaccccaagtggttggtggagttagctccaagactgtat
aagtcttcagatccaaataggatgagtaaacgtaagcgccaggagcgtatcgaaccgctg
tacgacccatatcacgagcctaactcgtggcgtttgagcaagcgccgagcttga
DBGET
integrated database retrieval system
