Zingiber officinale (ginger): 122043510
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Entry
122043510 CDS
T08725
Name
(RefSeq) pre-mRNA-processing protein 40C-like
KO
K12824
transcription elongation regulator 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122043510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122043510
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
U1 related factors
122043510
Complex B
122043510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
DUF1690
Motif
Other DBs
NCBI-GeneID:
122043510
NCBI-ProteinID:
XP_042460080
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Position
1B:153736861..153755914
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AA seq
891 aa
AA seq
DB search
MSATAGPVHEMQAPPPLVSNSESTEPVAGSADGTPTSATVPTMGLSVQGTTASSSLPESI
QSTVAASGTPAQSSLSQTGSLVKQNEPAQDSVRAKFTSSSGYVVPAPSFSYNVVPRMNST
PSNAQQPSSSPAFKWTPPMPAAALQPPVPGQFLGNRPFSFSVVPHANVVPASGQQIQLET
APVQVQFQGGRFTPSSASLQPPIPRQPIRAAFVPGAVSSNSPAPTQFPLSVPRGDATKQR
NFLFSGNNQLLTAEKSETTPSTEKQNTSDAVAMVTTSTSSSLASSFSVQTSHCLPSSTSM
APGTSVNSSSTSMSIPAAPSFTVHAEIPSSDRFQAFLGISNSAVVSNAATIKPTATSSFS
PLKPIVPLPATLPPAIPVPVPVPVHQNLQQPTNPVYALQPTMAPSPQFFWSHPPQAGQMQ
HVPFSPYPGYLPAPFPQSVQGIPPTVPSVFVQPPGVSPVVSQVEPTTGCLHPESSSIGEL
PSSDIDQGKKSIIADKAERDTNNEIENAWTSHKTETGAVYYYNSITGKSTYEKPSSFKGE
QEKATNQSGPVSWEKLPGTDWTLVTTNDGRKYYYDTKNKVSSWHAPAEVAELRKGQEINS
TEGNEAPPEAGMQGDKVFASVSIDTPAAQTGGRESVALRSGQPVPSSALDLIKKKLLPET
GSPITSPHSTSGPTASDTNGLKAVESAVKGQKPAISKEKAKDAAGDANMSDSSSESDDEE
SGPSKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKGVPSHSTRRALFEHYVRTR
AEEERKEKRAAQKAALDAFKQLLEEATEDIDHKTDYHSFRKKWGGDPRFEAIDRKERELL
LNEKVKAADERIKALRMAASSSFKCMLRDNQNITLNSRWSRVSYFFNIASY
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaacagcaggacctgtacatgagatgcaagctccccctcctttggtttcaaat
tctgaaagcacagaacctgttgcgggatcagctgatggtacacctacatctgcaactgtt
ccaacaatgggtctgtcagttcaagggacaactgcatcatcttcattgccagagtccatt
caatctactgttgcagcttctggaactcctgctcaaagctcattatcccagacgggttct
cttgtaaagcaaaatgagcctgctcaagattctgttagggctaaatttacttcatcatca
ggctatgttgttccagcaccgtctttttcttacaatgtggttcctcgaatgaattcaacc
ccttcaaatgctcagcagccgtcatcttctcctgcttttaagtggacaccaccaatgcct
gctgcagctctacaaccccctgttcctggccagtttttaggcaacagacctttttcattc
agtgtagtcccacatgctaatgttgtcccagcatctggtcagcagattcaacttgaaacc
gctcctgtacaagtacagtttcaaggtggaaggtttactccttccagtgcttccttgcaa
ccaccaattccaagacaacccatccgtgctgcttttgtcccaggtgctgtatcttcaaat
tcacctgcacctacgcagtttcctttgtctgttcctagaggagatgctacaaagcaaagg
aatttcttgttcagtgggaacaatcaacttttgactgcagagaaatctgaaacaacccca
tctactgaaaaacagaatacctcagatgctgttgcaatggtaactactagcacttcctca
agtctggctagttctttctctgtacaaacgtctcattgtttgccatctagtacctcgatg
gcccctggtacaagtgtcaattccagttcaacaagcatgtcgattccagctgctccatct
tttactgtgcatgctgaaataccaagcagtgacaggttccaagcatttttgggaatttct
aattctgctgtggtttcaaatgctgccacaataaaaccaacagccacaagttctttttca
ccactgaagcccattgttcctcttcctgctactctaccccccgcaattcctgttcctgta
ccagttcctgttcatcaaaaccttcaacagccaacaaatccagtttatgcattacaacct
acaatggctccatcccctcaattcttctggtcgcatccacctcaagctggtcagatgcag
catgtaccattttcaccttaccctggctatcttcctgcaccttttcctcaatctgtccag
ggaatacctcctacagttccttcggtgtttgttcagcctcctggtgtctctccagttgta
tcccaagttgaaccaacaacaggatgtctccatcctgaaagcagctcgataggagaatta
ccttcatcagatattgatcagggtaaaaaatccatcattgctgacaaggcagaaagagat
actaataatgaaatagaaaatgcatggacatcccacaagacagagaccggtgcagtctac
tactataattctattactggaaaatcaacatatgaaaaaccctcaagttttaagggagag
caagagaaagccaccaaccagtcaggtccagtttcatgggaaaagttacctggtactgat
tggacacttgtaacgacaaatgatgggaggaagtactattatgataccaagaacaaggtt
agtagttggcatgccccagcagaggttgcagaactcaggaaaggtcaagaaataaattca
acagaaggaaatgaagctccaccagaggctggcatgcaaggagataaagtttttgcatct
gttagtattgatactccagctgcacagactggtggtcgtgaatctgtggcccttcgttct
ggacaacctgttccatcatcagcattggatttgatcaagaagaagttgctccctgaaaca
ggctctccgataacatcacctcattcaacttctggccctactgcatcagatacaaatgga
ttgaaagctgttgagtcagctgtcaagggacaaaagcctgctattagtaaagaaaaagca
aaagatgctgcaggtgatgctaatatgtcagattcctcatctgaatcagatgatgaggaa
agtggacctagcaaagaagaatgcattattaaattcaaggaaatgcttaaagaacgagga
gttgcacctttttcaaaatgggagaaagaactgccgaagatagtgtttgatccacgcttt
aagggggttccaagtcattctactcgaagggcattgtttgaacattacgttaggacacga
gctgaagaagagcgcaaggagaaaagagcagcacagaaggctgcacttgatgcttttaaa
caattattggaagaagctacagaggacatcgatcacaaaactgattatcattcatttaga
aaaaaatggggtggtgatccccgatttgaggccattgatcgcaaggaacgagagcttcta
ttgaatgagaaagtgaaggctgcagatgagaggataaaagccctacgcatggctgcttcc
agtagttttaagtgtatgcttcgtgataatcaaaatattacactgaacagccgatggtcc
agggtaagttattttttcaatattgcttcttattag
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