Zingiber officinale (ginger): 122052282
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Entry
122052282 CDS
T08725
Name
(RefSeq) THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122052282
09122 Translation
03013 Nucleocytoplasmic transport
122052282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122052282
03041 Spliceosome [BR:
zof03041
]
122052282
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
122052282
Spliceosome [BR:
zof03041
]
Complex C
Other components
EJC/TREX
122052282
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122052282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Mitoc_mL59
Motif
Other DBs
NCBI-GeneID:
122052282
NCBI-ProteinID:
XP_042469668
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All DBs
Position
3A:complement(111882705..111930221)
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AA seq
645 aa
AA seq
DB search
MAAETPPGLHILLHQQVKEHAPTLISSHADRDRVIEVFRNALLKTGPPESFALQAVQEAI
KPQKQTVLVQDENQSLENALRTLLQELVSSAVRSGERMMQYGQSVDEDESIRGQIPQFLD
IVLHLCERGHIEGGMIFQLLEDLTEMSTMKDCKEIFGYIESKQDILGKQELFGRGKLVML
RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTTIETKYEKDAPDGI
SVDFNFYKTFWSLQDHFNNPIPTTLPPPQWQKFGSNLTVVLDTFEAQPLSDDDGNTNHLH
QEEEDAAFNTKYLTSSNLMGLELKDPSFRRHILLQCLILFDFLKTPGKNDKDGSSDSMKE
EIKSFEERVKKLLEVIPPKGKEFLQSIEHILEREKNWVWWKRDGCPAFEKQPIERKIGQE
GVKKRKARWRLGNKELSQLWKWADQNPNALTDPRRVRMPSVTEYWKPLGEDMDVSAGIEA
EYNHKNNRVYCWKGLRFSARQDLEGFSRFTDHGIEGVVPPELLPPEVRSKFHTKAGDRSK
RTKKEEVKGVATHPEDNQVASATVENDGIGSGAELEDGVAPMDSDALAGEVQKQSPDTDS
IHEAGQSEADGVDNDTKTDTKMEVDASDINSKEANPTSRNRDSND
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaaactccaccaggccttcatattcttctgcaccagcaagtcaaagagcac
gctcccacactgatctccagccatgctgaccgtgaccgagttatcgaagtgtttaggaat
gcgttattaaaaactggcccacctgaaagttttgcacttcaagctgtgcaagaagcaata
aaacctcagaaacaaactgttctggtccaagatgaaaatcaatccctggaaaatgcgctt
cggacattgcttcaagaattagtgtcatctgcagtcagatcaggtgaaagaatgatgcaa
tatggccaatcagttgacgaagatgaaagtattcgtggacagataccacagtttcttgat
attgtgcttcatctctgcgaaagaggacatattgaaggtgggatgattttccagctgtta
gaagatttgactgagatgtcaaccatgaaggactgtaaagaaatttttgggtatattgag
agcaaacaagatatcttgggaaagcaagagctctttggtagaggaaagcttgtgatgttg
aggacgtgcaatcaacttcttaggagactatcaaaggcaaacgatgtggtattctgcgga
cgcattcttatgtttcttgcacatttttttcctctttcagagcgttcagctgtgaatata
aagggagttttcaacacaacgatcgaaaccaaatatgagaaagatgctccagatggaatt
tcagtcgatttcaacttttacaaaaccttttggagtttacaggatcattttaataatcct
attccaacaacccttccaccaccacaatggcaaaaatttggatcaaacttgacggttgtg
ttggacacctttgaagctcagcccctgagtgatgatgatggaaacactaaccatcttcac
caagaagaggaggatgctgcttttaacacaaagtacttgacaagcagtaacttaatggga
ttagagttgaaagatcccagttttcgccgtcatattctactgcaatgtctcatcttgttt
gattttctaaagacacctggaaagaatgacaaagatggatcatccgacagcatgaaagaa
gaaattaagtcttttgaggagcgtgtaaagaaactactagaggtcattcctccaaaaggg
aaggagtttcttcaaagcatagagcatatattggagcgtgaaaaaaattgggtatggtgg
aaacgagatggctgcccagcatttgagaaacaacccattgagagaaagattggccaagaa
ggagtaaagaagcgtaaggcaagatggaggttgggtaacaaagaactatctcagctatgg
aaatgggctgaccaaaatcctaatgctctgactgacccacgacgtgtgcgaatgccatcg
gtcactgaatattggaaacctcttggagaagatatggatgtttctgctggaatagaagct
gaatataaccacaagaacaaccgtgtctattgttggaaaggcctacggttttcagcacgg
caagatttggaaggcttttcacggttcactgatcatggcattgaaggagttgtacctcca
gaacttctgccaccagaggttcgttcgaagtttcatacaaaagctggtgacaggtcaaaa
agaacaaaaaaggaggaagttaaaggtgttgctacacatcctgaagataaccaggttgca
tcggcaacagttgagaatgacggcattggtagtggagctgaacttgaagatggtgtggca
cccatggattcagatgctttagctggagaagttcaaaaacaaagccctgatacagattcc
attcatgaggctgggcagtctgaagctgatggagtagataacgatacaaaaactgatacc
aaaatggaagttgacgcctctgatataaattcaaaagaagccaacccaacaagcagaaat
agagatagtaatgactaa
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