Zymobacter palmae: ZBT109_1917
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Entry
ZBT109_1917 CDS
T05646
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
zpl
Zymobacter palmae
Pathway
zpl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ZBT109_1917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zpl03400
]
ZBT109_1917
Enzymes [BR:
zpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ZBT109_1917
DNA repair and recombination proteins [BR:
zpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ZBT109_1917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
SNF2-rel_dom
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBG30663
UniProt:
A0A348HGB1
LinkDB
All DBs
Position
2104276..2107770
Genome browser
AA seq
1164 aa
AA seq
DB search
MPDSTPVSPFSPPAPRSASDTCYWQQPPGSAAPLALATRLAQSAKTPFMVITPDMASAQR
LEADLRFFYSDNERLQTFPDWETLPYDTFSPHRDIVSTRLRVMRRLQSHHPDVLIVPVNT
LMQRLPPVDYVAVQALKLTRGQHLDREQFRLQLHRNGYRAVETVFEPGEYAFRGALIDLY
PTGSDSPLRIDLFDDEVDTLRRFDPETQRSSDSLDEIELLPAHEYPLTQEAIARFREGFE
TGFDVDPRQVPLYLDALEGIPSPGLEQYLPLFFDETATLFDHIGSEALEIMLLPGVQDAA
RQHWTSIQERYANLAVDRTRPLLPPERAFVPADDLFGLIKRYPRTQWVSEPHKHAHTFAA
APLPDISLDGRSPKPLHRLMAFLEQHVGPDTRLLYVAESRGRLEALEEQLGGLVTHAAHL
PGWTTFMQEQAVRGITTGALGEGVWLPADKLIVITETELYGDIVRQSRRRQQVRATDDDE
LVIRSLSELKPGAPVVHRAHGVGRYLGLETITAAGQQAEFVALEYANGAKLYVPVDSLSM
ISRYSGAPDEAAPLHKLGNDQWEKARRKAAERIRDTAAELLDVYARREAREGFACRPPDD
AYARFAAAFPFEETPDQKAAIQAVIHDMTSVQPMDRVICGDVGFGKTEVAMRAAFLAVNS
GRQVAVLVPTTLLAQQHYDNFRDRFADTAVNIEILSRFKAGKAQTAALERLREGQADIVI
GTHKLLGRDTEFKELGLVIIDEEHRFGVAQKERLKAMRAEVDILTMTATPIPRTLSMAMS
GMRDLSIIATPPARRLSVKTFIQQRNDGVLKEAILREILRGGQVYYLHNEVKSIEAAAEK
LEELVPEARVGVAHGQLAERQLERVMSDFYHKRFNILVCSTIIETGIDVPSANTIIIERA
DKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKQITSDARKRLEAISQSEDLGAGFTLASH
DLEIRGAGELLGEEQSGQIETIGYGLYMDMLDRAVKAIRSGKTPNLEAPLEEEVEIGLGL
PALIPDDYLPDVQQRLVMYKRISSAATADALRELQVEMIDRFGLLPDPVKHLFRQAVLRQ
RAERLGIHRLEAGPERGRLIFGSQPTIDPMTLVTLIQREPQRYRLDGAQTLRFTAAMPDA
ETRFKAIEALLTRLEQSRSAVNSD
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcctgactcaacgcctgtctcacctttttcgccacccgctccccgctccgcttccgat
acctgctattggcaacagcccccgggcagcgcggccccactcgcgctggcgacacgactg
gcgcagtctgccaagacacccttcatggtgatcacgcccgatatggcgtcggctcagcgg
ttggaagccgatctgcgcttcttctacagcgataatgagcggctgcagacatttcccgac
tgggaaactctgccgtatgacaccttctcaccgcaccgcgatatcgtctcgacgcggctg
cgcgtgatgcgacgcttgcagtcgcatcacccagacgtgctgattgttcctgtcaataca
ctgatgcagcgcctgcctccggtcgactacgtcgccgtgcaagcgctcaaactcacgcgc
ggccagcaccttgatcgcgagcagttccgcttgcagctgcaccgcaacggctaccgggca
gtcgagaccgtcttcgagccgggcgagtatgctttccgcggcgcgctgatcgacctctat
ccaaccggtagcgattcgccactgcgcattgatctgttcgatgatgaagtcgacacactg
cgccgcttcgatcccgaaacgcagcgctccagcgacagcctcgacgaaatcgagctgctg
ccagcacatgaatacccgctgacgcaggaggccattgcacgcttccgtgaagggttcgaa
acggggttcgatgtcgatccgcgccaagtaccgctctatctggacgcgctggaaggcatt
ccctctccgggccttgagcagtatctgccgctgttttttgatgaaaccgccaccctgttc
gatcacatcggcagcgaggcgctcgagatcatgctgctgccgggcgttcaggatgctgct
cgccagcactggaccagcatccaggaacgctatgcaaacttggccgttgatcggacgcgc
ccgctactgcctcctgaacgagcgtttgtgcccgccgacgatctgtttggactaatcaag
cgctatccacgcacccagtgggtcagcgaacctcacaaacacgcccacacctttgccgcg
gcaccgcttcccgatatcagccttgatgggcgtagccccaaaccactgcaccgattgatg
gcgtttctggaacagcatgtcggccccgatacgcgcctgctgtacgttgccgaaagccgc
ggccgcctagaagcgttggaagagcaactgggcggactggtcacgcatgcggcacacctg
ccgggctggacaaccttcatgcaagaacaggcggtgcgcggtatcactaccggcgcgctg
ggtgaaggtgtctggttacccgctgacaaactgatcgtcattaccgaaaccgagctgtac
ggggacatcgtgcgccaaagccgccgacgccaacaggtgcgtgcgacggacgatgacgag
ttggtgatccgtagcctgtcggagctaaagcccggcgcaccggtcgttcaccgtgcacac
ggggtcggacgctatctgggactggaaaccatcactgcagcgggtcagcaggcggagttc
gtggcgctcgaatacgccaacggtgccaagctgtacgtgcccgtcgatagcctgtcgatg
atctcacgctatagtggtgcgcccgacgaagctgcgccactgcacaagctgggcaacgat
caatgggagaaggcacgccgcaaggcggccgaacgcatccgcgatacagcggccgagctg
ctggacgtgtatgcccgccgtgaagcgcgcgagggttttgcctgccggccccccgacgat
gcctatgcacgttttgccgcggcattcccgttcgaggaaacgcccgatcagaaagcggcc
attcaggccgtcattcacgacatgacctccgtacagccgatggaccgtgtcatctgcggt
gacgttggtttcggcaagaccgaagtggcaatgcgcgcagcgttcttggccgtcaactcg
ggacgacaagtcgccgtactggtgccgaccacactgctggctcagcagcactacgacaac
tttcgcgaccgcttcgcggataccgccgtcaacatcgagatcctgtcgcgcttcaaggcc
ggcaaagcacagaccgccgccctcgaacgcctgcgcgagggccaagctgacattgtgatc
ggcacgcacaagctgctcgggcgcgacaccgaattcaaggaactggggctggtcatcatt
gacgaggaacaccgctttggggtggcacagaaggagcgcctgaaggcgatgcgcgccgaa
gtggacattctcaccatgaccgctacccccatccctcgcacactgtcgatggcgatgagt
ggcatgcgcgacctgtcgatcatcgccacgccaccggcacgccgcctgtcggtcaaaacg
ttcatccagcagcgcaatgatggcgtattgaaggaagctatcctgcgtgaaatcctacgt
ggcgggcaggtctactacctccacaacgaggtcaaaagcatcgaagccgcggccgaaaag
ctggaagaactggttcccgaagcccgcgtcggcgtggcacacggtcagctggccgaacgc
cagttggaacgcgtaatgagcgacttctaccacaagcgcttcaacattctggtctgctca
acaatcatcgaaaccggtattgacgtgcccagcgccaacaccatcatcattgagcgcgcc
gataagttcgggctggcacagctgcaccagctgcgcggccgcgtgggtcgttcgcaccac
caagcctatgcgtacctactgacgccaccgccgaagcagatcaccagtgatgctcgcaag
cgtcttgaagccatcagccaatcggaagatctgggggccggtttcacgctggccagccac
gatctggaaatccgcggcgcaggtgaactgttgggcgaagagcagagtggccagatcgag
accatcggctatggcctgtacatggacatgcttgatcgtgcggtgaaagccattcgttcg
gggaaaacgccaaacctcgaagcgccgctcgaagaagaggtcgaaatcggactggggctg
cccgccctgattcccgacgactacctgcccgatgttcagcagcgtctggtgatgtacaag
cgtatcagtagcgccgctacggccgacgccctgcgcgagcttcaagtcgagatgatcgat
cgcttcggcctgctgcctgacccggtcaagcacctgttccgtcaggccgtgttgcgccag
cgcgccgaacggctgggcatccatcgtcttgaagcggggccggagcgaggtcgcctgatc
ttcggcagccaaccgaccattgacccgatgacgctggtcacgctgatacaacgcgaaccc
cagcgctaccgactcgacggcgcgcaaacgctacgcttcactgccgcgatgcccgatgca
gaaacgcgcttcaaggcaatagaagccctgctgacacggcttgagcagagtcgcagcgcg
gtgaacagcgactaa
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integrated database retrieval system
