Zootoca vivipara (common lizard): 118084946
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Entry
118084946 CDS
T07275
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118084946 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zvi03021
]
118084946 (PCF11)
03019 Messenger RNA biogenesis [BR:
zvi03019
]
118084946 (PCF11)
Transcription machinery [BR:
zvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118084946 (PCF11)
Messenger RNA biogenesis [BR:
zvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
118084946 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
CFIA_Pcf11
SHOCT
VHS
Motif
Other DBs
NCBI-GeneID:
118084946
NCBI-ProteinID:
XP_034970991
LinkDB
All DBs
Position
LG5:9725070..9746140
Genome browser
AA seq
1745 aa
AA seq
DB search
MSGGGGSSSSSSSSSSSAGTAASEGPVGGGGGEDSCRDYQSSLEDLTFNSKPHINMLTIL
AEENVPYAKDIVSLIEAQVAKAPSNEKLPVMYLMDSIVKNVGREYLAAFTKNLVATFVNV
FEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSVDPAWPIKPLPPNVNTSSIHVNP
KFLNKSPEEPPAPSPAVCPPPPVSCPAVSSTPVVPEIQKNLTQEQLIRQQLLAKQKQLLE
LQQKKLELELEQTKAQLAVSLSGQQSGSSLSQASVKPHVPQTSHMPVKAPHQVCLPPEKT
RLSPLHDVKTANRDPRLNRTSQHSSHSKDQSHRKDFTVSPINQTDPKVSKTLQAEKQSTS
KQERQKQNEKSQKKEFDQFDSKLKSPSPLQNKLLHAKDTRNQESENTRVSEISKRDPRLK
KHLLEKPDGKDDDPKEKRRSMERKDKEEHRSVSGRTKIINGIVQKQDPNTEESEKQVGKL
GRSGTRKRSRSPRSRSPSSHSPKRRERRSPKRRLRSLSPGPKTAKSRVSGPKQSHAEDFG
QGLREERSSNKRKQEVRDSRRLKKTHEDRPQEGMNLHSSKANSEPKENVENWSSSKSNKR
WKSGWQENKTPQPTEEHQGLSKSPHQRHRDTWATSSKGVTSPRTPKQQHRLSVDANLQIP
KELTLANKRELLKKANEQLSSGEITQDEFLVLCHQIRQIIQYQEGKHRCNVWDSPTGEKG
ISKKKPLLSDADLIYHEHKAKLKRTQVQHSFPRLNMMDPEDILLERHLNETFLSGMDCEQ
TKSKSGSQFSERSRRHSPVGSNRPYSENSPHEGRRRHDESNSSKGIRDEQRSPFNEHYKR
ARYEDADKQFTENTGSRFGVSDGKQRFSSLMEERSHFEGSPRHPGTRAGGDGQGTHFEGL
ANASSRIEGPQPQTNLRFEGSLGQPASQFDGPPGQSGGKSSLFDGPAQMGGGPLRFEGPS
GQVGAGTAIRFDSPMAQPGGALRFEGPTGQSMSGIRFEGAHGQPSGGIRFEGPHGQPPAG
IRFEGPHGQSSGIRFEGPHDQPSGTMRFDGQPSGGMRFEGPHGQPSSGIRFEGPHDRPVG
PHGPPGGGMRFEGPHGQPIGPHGQPAAGMRFEGPHMQPMGPLGQPGGNLRFEAPHGQPMG
PHGQPARFEGPHGQPMGPHGQPLGPHGQPGVGPRFEGPHGQSGIGPRFEGPSGQAGGGLR
FEGPINQTGPRFDGCHSRFDGQPGQPSLMQRLDGLHVQPGPRFEMGPAQQTQPRFDGPPG
QQIPPRFDTPIPQRFEDPKHQQATRFDIPLGHQGPRLENVANHPASRLETPPYGQTGPYN
EPPNQPPYNAPSQGMQFQRTEQIFDNPQGPNFNGPPGSGAQTFPNTINRAPGPYYDDKNL
QYGNFSGMTGNVQQPQQVPVMSAASTQPVPYNPGQPLLAAHAHNPGSFVQNQPGQYLKGN
APLSYPDNHLGQLDVNELFSKLLSTGILKVLQTDSTSAQVSEVSAQPAPEEEEEDQDQNE
DQDVPDLTNFVIEDLKQRYDSIINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRT
EKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQS
VPAGPAGVDESCEICQEQFEQYWDEEEEEWHLKNAIRVEEKIYHPSCYEDYQNTSSFDST
PSPSKTPVENPLNIMLNIVKQEVQDSCNSPKVKEEPEDTPADDCMEGSSPTLAEIKTEPE
KVESV
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcggcggctccagtagcagcagctccagcagcagctccagcgccggcacc
gcggcctccgaggggcccgtgggcggcggcggcggggaagactcctgccgcgactaccag
tcttcgctcgaggacctgaccttcaacagcaagccgcacatcaacatgctgaccatcctg
gccgaggagaacgtgccctacgccaaggacatcgtctcgctgatcgaggcgcaagtcgcc
aaggctccttctaatgagaaacttcctgttatgtaccttatggactccattgtcaagaat
gttggaagagaatatcttgcagcgtttactaaaaacctagttgcaacatttgttaatgtg
tttgaaaaggtggatgaaaatactaggaaaagtttatttaaattgcgttccacgtgggat
gaaattttccctttgaagaaactctatgcccttgatgtccgggtgaattcagtagaccct
gcttggccaattaaacctctaccccctaatgtgaatacttctagcatccatgtgaatcct
aagtttttaaataaatcgcctgaggaaccgcctgcacctagccctgcagtctgtcctcct
cctcctgtgtcctgtcctgctgtgtcctctactccagttgttcctgaaatacaaaagaat
ttgactcaagagcagctaataagacaacagctactagcaaaacaaaaacagttgttagaa
cttcaacagaaaaaattagaactggaactagagcagactaaagcacagctggcggtttct
cttagtggtcagcaaagtggatccagcttgagtcaagcatctgtgaagccacatgttcca
caaacatctcacatgccagttaaagctcctcatcaagtttgtctgccacctgaaaaaacc
cgtctctctccactccatgatgtcaaaacggccaacagagatcctcgtcttaatagaaca
agtcaacattcttcccattctaaagatcaaagtcataggaaagattttacagttagtcca
atcaatcagactgatccgaaggtcagcaaaacactacaggctgaaaaacaaagtacatca
aagcaagaaagacaaaaacagaatgagaaatcgcaaaagaaagagtttgatcaatttgat
tcaaaattgaagtctccatctcccttgcagaacaagctgcttcatgctaaagatactaga
aaccaagaaagtgagaacaccagagtatctgaaataagcaagagagatccaagattgaaa
aaacatcttctagagaagccagatggtaaagatgatgacccgaaagaaaagaggcgaagc
atggagagaaaagacaaagaagagcatagatcagtcagtggtagaaccaaaataattaat
ggcattgtccaaaagcaagatcccaatactgaagagtcagagaaacaggttggaaagcta
ggaaggtcgggtaccaggaaaaggtcacgttcccctagatctcggtcaccatcttcccat
tctccaaaacgaagagagaggaggtcacccaaaagacggctcagaagtctctctcctgga
cctaaaactgcaaagtctcgggtgtcaggaccaaagcaatcccacgcagaggactttggg
cagggactacgggaagaaaggagctctaacaaaaggaagcaggaagtgagagattcaagg
aggctgaagaaaactcatgaagaccgaccgcaggaaggaatgaacttgcattcttcaaaa
gcaaactcggaacctaaagagaatgtggagaactggtcaagttccaagtcaaacaaaagg
tggaaatctggttggcaagaaaataaaaccccccagccaactgaagaacaccaaggactt
tctaaatcacctcatcagaggcacagggacacttgggcaaccagtagtaaaggagttaca
tcacctcgcacaccaaagcagcaacatagattaagtgtggatgcgaatttgcagattccg
aaagaactgaccttggcaaacaagagagagttgcttaagaaggctaatgaacaactgtcg
tctggcgaaataacgcaagatgagttccttgttctgtgccatcagattcgccaaattatc
cagtatcaggaaggaaaacacaggtgcaacgtgtgggatagtcccacaggtgaaaaggga
atttcgaaaaagaagcccctgttgtctgatgcggatttaatatatcatgagcataaagct
aagctaaaaagaacgcaagttcagcattcatttccgagactcaacatgatggatcctgaa
gatattttactcgagagacacttgaatgagacatttctttctggaatggattgtgaacaa
acaaaaagcaaatcggggagtcaattcagtgaaagatcgaggcggcattcccctgttggt
agtaacagaccatattctgaaaattcacctcatgagggccggagaagacatgatgagtcc
aactcctccaaaggtattcgagatgagcagaggtctccattcaatgaacactataagaga
gcaagatacgaagatgcagataaacaatttactgagaatacaggatcacgatttggggtt
tcggatggaaagcaaagatttagttcactgatggaggaaagatctcattttgagggctcc
cctagacatcctggaacaagggcaggtggagatggacaaggaactcactttgaagggctg
gctaatgcaagttctagaatcgaaggaccacaaccacagactaatttaaggtttgagggg
tccctaggtcagccagcatctcagtttgatgggcccccaggacaatctggaggaaaaagt
tctctgttcgatggaccagcacagatgggtggtggtcccttgaggtttgaagggccctca
gggcaagttggtgcagggactgctatacggtttgatagtcctatggcacagccaggggga
gcattgagatttgaggggcccacaggccagtcaatgagtggtataagatttgaaggggcc
catggtcagccctcaggtgggataagatttgaaggacctcatggtcagccacctgctggg
attaggtttgagggaccacatggtcagtcatctgggatcaggttcgagggaccacacgat
cagccttcaggtactatgaggtttgatggccagccttccggtggaatgaggtttgaaggt
ccacatggccaaccttcaagtgggataaggtttgaagggcctcatgaccgtcctgtgggg
cctcatggtcccccaggaggtggaatgaggtttgaaggcccccatggccaacctataggg
cctcatggtcaaccagcggctggcatgcgatttgaagggcctcatatgcagccaatggga
cctcttggccagccaggaggcaatttgcgctttgaagctccacatgggcagcctatgggt
ccgcatgggcagccagcaagatttgaagggcctcatggacagcctatggggccacatggg
cagcctttagggccacatggtcaaccaggtgttggtcccaggtttgaggggcctcatggt
cagtctgggattggtcccaggtttgaggggccttcaggccaggctggaggtggacttagg
ttcgaaggacctattaaccaaacagggccaaggtttgatggctgtcattcaagatttgat
ggtcaacctggtcagccatcacttatgcaaagactggatggattacatgtacaacctggt
ccaaggtttgaaatgggccctgctcagcagacacaacctcggtttgatggtcctccgggt
cagcagatacccccaagatttgatacaccaatacctcaacggtttgaagatcctaaacac
cagcaggcaacacgatttgatattcctcttggtcatcaaggtccaagacttgaaaatgta
gctaatcatcctgcctcaagactcgaaacaccaccttatggacaaactggcccttacaat
gaacctcccaatcagccaccctataatgcgccatcacaaggaatgcaattccagagaact
gagcagatatttgataacccacaaggaccaaactttaatgggccacctggttctggagca
cagacctttcctaacactattaacagggcacctggaccttactacgatgacaagaatctt
cagtatggaaacttcagtggtatgacggggaatgttcagcagcctcagcaggttcctgtt
atgtcggcagcatctactcaaccggtaccttacaatccagggcagcctctcttagcagct
catgcacataatcctggaagctttgtccaaaatcaaccaggtcagtatttaaaggggaac
gctccgctttcctatcctgataatcatcttggacaacttgatgtaaatgaattattctca
aaactactttctacagggattctcaaagttttacagactgattcaacttcagctcaagtc
agtgaagtttctgcccaaccagctccagaggaggaagaggaggatcaagaccagaatgag
gatcaagatgtcccagacctaactaactttgttatagaagatctaaaacagcgatatgat
agcattataaaccggctctatactggcattcagtgttactcttgtggaatgaggttcaca
acttcacagacagatgtatatgcagaccatttggattggcactatcgtcagaaccgcaca
gaaaaggatgtcagccggaaagtcactcacagaagatggtactacagcttaacggactgg
atagagttcgaagaaatagctgatttagaggaacgtgcaaagagccagttctttgagaaa
gtgcatgaagaagttgtgttgaaaacacaagaagctgctaaggaaaaggagtttcagagc
gtccctgccggcccagctggagtagatgagagctgtgaaatctgccaggagcaatttgag
caatattgggatgaggaagaagaggagtggcacctaaaaaatgccatccgagtagaggag
aagatataccatccgtcatgctacgaagattatcaaaatacctcatcatttgattcaacg
ccatctcctagcaagacacctgtagagaacccgctaaatattatgttgaatattgttaag
caagaagtacaggactcctgtaacagtcccaaggtaaaagaagagcctgaggatacgcct
gctgatgactgtatggaggggagctcacccacattggccgaaattaaaacagagcctgaa
aaggttgagtcagtttaa
DBGET
integrated database retrieval system
