Zootoca vivipara (common lizard): 118097309
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Entry
118097309 CDS
T07275
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
118097309 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zvi03400
]
118097309 (LIG4)
Enzymes [BR:
zvi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118097309 (LIG4)
DNA repair and recombination proteins [BR:
zvi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
118097309 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
DUF2087
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
118097309
NCBI-ProteinID:
XP_034995944
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All DBs
Position
LG1:complement(130905794..130911336)
Genome browser
AA seq
939 aa
AA seq
DB search
MRREKLPKSLCSYHHIKHRWHIYKMIEILKMSSISTSCSPSQLTVASQVPFEDLCLTLER
IQKCKSRPEKTKNFKEFLDSWRKYHAALHKNEKDVTDSFYPAMRLILPQLERERMAYGIK
ETMLAKLYIELLNLPKDGKDALKLLNYRTPTGSRGDAGDFAMIAYFVLKQRCPRKGQLTI
KQVNDILDSISNNNAAKRRDLVKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTLLS
IFHPDAAELHNVTTDLEKVCRQLHNPSVFLSDVSITLFSAFKPMLAAIANVQQIEKQMNH
QSFYIETKLDGERMQMHKDGDVYKYFSRNGYDYTQQFGASPLEGSLTPFIHNIFNNNIQN
CILDGEMMAYNPTTQTFVQKGSKFDIKKMSDDSELQTCFCVFDVLMINNQKLGHEMLSKR
YEILNKIFTPIEGRLQFVPRNQANTQKEVIDSLNEAIDHREEGIVVKDPMSIYKPDKRGE
GWFKIKPEYVSGLMDELDLLIVGGYWGKGLRGGMMSHFLCAVAETPPPGERPSVFHSICR
VGSGYTMEELRDLGLKLAKYWKPYRKRDPPFNILCGTEKPEVYIEPCNSVIVQIKAAEIV
SSDMYKTDYTLRFPRIERIREDKEWHDCMTLDILEQLRGKACGKLATKHFDIDNDEPQGK
KRKTVSKIRKKIGLMDHFKAPDLSNVNQISSIFEDVEFCVMTGTQKYSKYQLESKIVEYG
GSIVQNPGLDTYCVIAGTENVRVKNIISSDKYDVVRAEWLLQCFQYKTFVPWQFDFMIHM
SPETKQHFAREYDCYGDSYTGDTDIAKLKEVFSRINNFQEEISRDAIADIEARYSWESSP
LSMFRQHTIYLALSDELNNSGVRIKQTKLLTLILRFHGAKVVQQLEEGVSHVISGDHAHL
KEIKTVRRTFKRKFKILSEQWVKDSIKTGKLQNETVYLI
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgagaagagaaaaacttcctaaatccctctgcagctatcaccacatcaagcatagatgg
catatatataaaatgattgaaatactcaagatgtcttccatctctacttcctgttctcct
tcccaactaactgtggcatcacaagttccttttgaagatctctgtttgacattagaacga
atacaaaaatgcaaatcccgacctgagaaaaccaagaatttcaaggagtttttagattcc
tggaggaaatatcatgctgctcttcataaaaacgagaaagatgtaacagattctttttat
ccagcaatgaggcttattcttccacagttggaaagagagaggatggcttatggaattaaa
gaaaccatgcttgctaagctgtatattgaactgttaaatttacccaaagatggaaaagat
gctttaaaactcttaaattatcgaacacctactggctcacggggagatgctggagatttt
gctatgattgcctattttgtgttgaaacaaagatgtcccaggaaaggtcaactgaccata
aaacaagtgaacgatattttagattccatttctaataataatgctgccaaaagaagggat
ctggtcaagaagagccttcttcagttaataactcagagttcagcacttgaacagaaatgg
ttgataaggatgatcataaaagatttgaaacttggtgtcagccagcaaaccttactttcc
atctttcatcctgatgctgcagagttgcacaatgttacaactgatttggagaaagtctgt
agacagttacacaatccttctgtatttcttagtgatgtttctattacattattttctgcc
tttaaaccgatgcttgctgctattgctaatgtacaacaaattgaaaaacaaatgaaccac
cagagtttctacatagaaaccaaattagatggtgaacgaatgcagatgcacaaagatgga
gatgtttacaagtatttttcccggaatgggtatgattatactcagcagtttggagcttct
cccttggaaggttcattgactccatttattcataatatctttaacaataatattcagaac
tgcattctggatggtgaaatgatggcctacaatcccaccacacagacctttgtacagaag
ggtagcaaatttgacatcaaaaagatgtcagatgattcagaattacagacatgcttctgt
gtgtttgatgttctaatgattaataaccaaaaattgggtcatgagatgttgagcaaaaga
tatgagatactgaataagatatttacaccaatagaaggtcgtttgcagtttgttcctaga
aatcaagctaacactcagaaagaagtaatagattctctaaatgaagcaatagatcacaga
gaagaaggaattgtggtaaaagatcccatgtcaatttacaagccggacaaacgtggggaa
gggtggttcaagatcaaaccagagtatgttagtgggctaatggatgaactagacctttta
attgttgggggctactggggaaaaggtcttcgtggtggcatgatgtcacattttttatgt
gcagttgctgagactcctccgcctggcgaaaggccatcagtgttccactccatttgtcgt
gttggttctggttacactatggaagaacttcgtgatcttggcttgaaattagccaaatat
tggaaaccttatcgtaaaagagatcctccttttaatatattgtgtggaactgagaagcct
gaagtctatattgagccttgtaattcagtcatcgtccagattaaagcagctgagattgtg
agcagtgatatgtacaaaactgattatacattacgtttccctcgtattgagaggataaga
gaagataaagaatggcatgattgtatgactcttgacattctagagcaactccgaggtaaa
gcttgtggaaagctagcgactaagcactttgatatagataatgatgagccacaaggaaag
aaacgtaaaactgtgtcaaagattaggaaaaaaattggtttaatggatcattttaaagct
cctgatctttcaaatgtaaaccagatttccagtatatttgaagatgttgagttttgtgtt
atgacagggacacaaaaatattcaaaatatcagctagaaagtaaaatagtggaatatggt
ggcagcatagtccagaatcctggtctggacacctattgtgtgattgcaggaactgagaat
gtcagagtgaaaaatattatttcttctgacaagtatgatgttgtgagagcggagtggctt
ttacagtgctttcagtacaaaacatttgtaccctggcagtttgatttcatgattcacatg
tctccagaaacaaaacaacattttgcccgtgaatatgactgctatggtgatagttacaca
ggtgatactgatattgccaaactaaaagaggtgttctcaagaatcaataactttcaggaa
gagatctctcgggatgcgattgctgacatagaagcacgttattcatgggaaagctctcca
ctaagtatgttcaggcagcacacgatttacctggctctttctgatgaattgaataattca
ggggttaggattaaacaaacaaaactattaacactgatacttcgatttcatggagcaaaa
gtggttcaacagcttgaagagggtgtgtcccatgtaatcagtggagatcatgctcatttg
aaggagataaagacagtgagaagaacgttcaaaaggaagtttaaaattttgtctgagcag
tgggtaaaggattctataaagactggcaagttacaaaatgaaacggtttacttaatttaa
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