+F Repair protein KO
#
DNA Repair and Recombination Proteins - Trichophyton benhamiae
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ARB_02521 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D ARB_02402 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E ARB_02636 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E ARB_07552 hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E ARB_02923 hypothetical protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E ARB_04433 hypothetical protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E ARB_07906 DNA (apurinic or apyrimidinic site) lyase, endon uclease K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E ARB_07318 DNA lyase Apn2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F ARB_03250 POL3; Catalytic subunit of DNA polymerase delta K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F ARB_01095 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
F ARB_03262 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
F ARB_02740 DNA polymerase delta subunit 4, putative K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F ARB_01174 hypothetical protein K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F ARB_02629 DNA polymerase epsilon subunit B, putative K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F ARB_03173 CBF/NF-Y family transcription factor, putative K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E ARB_06135 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E ARB_07232 hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E ARB_04898 hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E ARB_01418 hypothetical protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E ARB_03228 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E ARB_00183 pnk1; DNA kinase/phosphatase Pnk1 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E ARB_04044 poly(ADP)-ribose polymerase PARP, putative K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F ARB_01956 DNA repair protein Rad4, putative K10838 XPC; xeroderma pigmentosum group C-complementing protein
F ARB_06275 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F ARB_06765 hypothetical protein K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F ARB_07022 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F ARB_03385 hypothetical protein K10609 CUL4; cullin 4
F ARB_07875 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F ARB_00898 DNA repair protein Rad7, protein K15082 RAD7; DNA repair protein RAD7
F ARB_00897 hypothetical protein K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F ARB_00027 hypothetical protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F ARB_06116 hypothetical protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F ARB_04830 hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F ARB_03624 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F ARB_00066 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F ARB_04609 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F ARB_06553 DNA-directed RNA polymerase complex II subunit Rpb7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F ARB_03020 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F ARB_00903 hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
E Cul4-CSA complex
F ARB_07022 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F ARB_03385 hypothetical protein K10609 CUL4; cullin 4
F ARB_07875 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
F ARB_01428 hypothetical protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F ARB_05127 hypothetical protein K10841 ERCC6; DNA excision repair protein ERCC-6
D TFIIH complex
E ARB_06870 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E ARB_00089 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E ARB_00378 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E ARB_06903 hypothetical protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E ARB_03075 hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E ARB_03925 hypothetical protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E ARB_00952 hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E ARB_04008 hypothetical protein K06634 CCNH; cyclin H
E ARB_00333 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E ARB_02596 hypothetical protein K07466 RFA1; replication factor A1
E ARB_06322 possible replication factor-a protein K10739 RFA2; replication factor A2
D Other NER factors
E ARB_00864 hypothetical protein K10847 XPA; DNA-repair protein complementing XP-A cells
E ARB_02680 hypothetical protein K10849 ERCC1; DNA excision repair protein ERCC-1
E ARB_02030 hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E ARB_06202 hypothetical protein K10846 ERCC5; DNA excision repair protein ERCC-5
E ARB_04898 hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E ARB_06544 hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E ARB_07922 hypothetical protein K03869 CUL3; cullin 3
E ARB_05233 RNA polymerase II transcription factor SIII (Elongin) subunit A, putative K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E ARB_01205 hypothetical protein K08735 MSH2; DNA mismatch repair protein MSH2
E ARB_02429 hypothetical protein K08736 MSH3; DNA mismatch repair protein MSH3
E ARB_00228 hypothetical protein K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E ARB_03111 DNA mismatch repair protein, putative K08734 MLH1; DNA mismatch repair protein MLH1
E ARB_04784 hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2
E ARB_01691 DNA mismatch repair protein (Mlh3), putative K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E ARB_03250 POL3; Catalytic subunit of DNA polymerase delta K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E ARB_01095 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
E ARB_03262 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
E ARB_02740 DNA polymerase delta subunit 4, putative K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E ARB_02596 hypothetical protein K07466 RFA1; replication factor A1
E ARB_06322 possible replication factor-a protein K10739 RFA2; replication factor A2
D RFC (replication factor C)
E ARB_04765 hypothetical protein K10754 RFC1; replication factor C subunit 1
E ARB_00500 replication factor C subunit K10755 RFC2_4; replication factor C subunit 2/4
E ARB_04305 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
E ARB_00844 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
E ARB_04766 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E ARB_06135 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E ARB_02542 exonuclease, putative K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E ARB_04898 hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E ARB_03485 hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E ARB_01727 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E ARB_01727 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
D BRCA complex
E ARB_03186 hypothetical protein K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E ARB_03186 hypothetical protein K04482 RAD51; DNA repair protein RAD51
E ARB_01638 DNA repair protein (Rad57), putative K10958 RAD57; DNA repair protein RAD57
D Rad52 family proteins
E ARB_01608 RAD52 DNA repair protein RADC K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E ARB_07440 hypothetical protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E ARB_01851 hypothetical protein K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E ARB_04991 RecQ family helicase MusN K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E ARB_04991 RecQ family helicase MusN K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E ARB_03463 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E ARB_02829 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E ARB_04683 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E ARB_02596 hypothetical protein K07466 RFA1; replication factor A1
E ARB_06322 possible replication factor-a protein K10739 RFA2; replication factor A2
D Protein phosphatase 4
E ARB_06086 hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E ARB_07660 hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5
E ARB_03507 DNA repair protein Rad18, putative K22804 SMC6; structural maintenance of chromosomes protein 6
E ARB_03716 hypothetical protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E ARB_02942 chromosomal organization and DNA repair protein Mms21, putative K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E ARB_06638 nuclear protein Qri2/Nse4, putative K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E ARB_02716 hypothetical protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E ARB_00093 hypothetical protein K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E ARB_03189 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E ARB_01909 DNA repair protein Dds20/Mei5, putative K10992 SFR1; Swi5-dependent recombination DNA repair protein 1
E ARB_05369 Rad2-like endonuclease, putative K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E ARB_02261 hypothetical protein K11339 MORF4L1; mortality factor 4-like protein 1
E ARB_07527 hypothetical protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E ARB_00199 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E ARB_04509 hypothetical protein K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E ARB_06096 hypothetical protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E ARB_03459 hypothetical protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E ARB_01727 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
D DNA Ligase 4 complex
E ARB_04383 hypothetical protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E ARB_06801 ATP dependent DNA ligase domain protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E ARB_03180 DNA polymerase POL4, putative K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
E ARB_04945 terminal deoxynucleotidyl transferase, putative K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E ARB_03228 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E ARB_06163 DNA repair protein, putative K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
E ARB_04526 endonuclease/exonuclease/phosphatase family protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
E ARB_04991 RecQ family helicase MusN K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E ARB_03463 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E ARB_02829 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E ARB_04683 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E ARB_04441 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E ARB_03186 hypothetical protein K04482 RAD51; DNA repair protein RAD51
E ARB_04415 hypothetical protein K11137 TELO2; telomere length regulation protein
E ARB_04365 hypothetical protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E ARB_02769 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E ARB_04013 hypothetical protein K24752 WDR70; WD repeat-containing protein 70
E ARB_03485 hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D ARB_00752 hypothetical protein K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D ARB_02290 hypothetical protein K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D ARB_06262 hypothetical protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D ARB_04960 hypothetical protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D ARB_07331 hypothetical protein K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D ARB_01554 hypothetical protein K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D ARB_03261 hypothetical protein K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D ARB_03393 hypothetical protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D ARB_07129 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
C Other TLS factors
D ARB_06135 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
D ARB_07486 SprT family metallopeptidase, putative K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D ARB_05381 hypothetical protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D ARB_07604 hypothetical protein K10903 HUS1; HUS1 checkpoint protein
D ARB_00168 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D ARB_06622 cell cycle checkpoint protein Rad17, putative K06662 HRAD17; cell cycle checkpoint protein
D ARB_00500 replication factor C subunit K10755 RFC2_4; replication factor C subunit 2/4
D ARB_04305 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
D ARB_00844 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D ARB_04766 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D ARB_00168 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D ARB_03701 hypothetical protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D ARB_06027 replication fork protection component Swi3, putative K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D ARB_02500 hypothetical protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D ARB_04415 hypothetical protein K11137 TELO2; telomere length regulation protein
D ARB_04894 hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D ARB_00866 hypothetical protein K23388 UBL4; ubiquitin-like protein 4
D ARB_04301 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D ARB_06028 inositol kinase kinase (UvsB), putative K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D ARB_03387 phosphotidylinositol kinase Tel1, putative K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D ARB_07449 hypothetical protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D ARB_00949 hypothetical protein K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D ARB_07920 hypothetical protein K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D ARB_01035 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D ARB_00306 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D ARB_07685 hypothetical protein K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D ARB_07826 hypothetical protein K24664 FKH; forkhead protein FKH
D ARB_01169 hypothetical protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
D ARB_07525 hypothetical protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D ARB_07915 hypothetical protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D ARB_02373 DNA repair protein Pso2/Snm1, putative K15340 DCLRE1A; DNA cross-link repair 1A protein
D ARB_05194 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
C Helicases
D ARB_00269 hypothetical protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D ARB_03348 hypothetical protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D ARB_03882 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D ARB_01231 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D ARB_03154 hypothetical protein K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D ARB_00140 dUTPase, putative K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D ARB_04555 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D ARB_02698 hypothetical protein K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D ARB_03411 hypothetical protein K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ARB_02521 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D ARB_02402 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E ARB_02636 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E ARB_01628 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E ARB_00407 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D ARB_00140 dUTPase, putative K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D ARB_04555 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024