+E Transcription factors KO #

  Transcription Factors - Actimicrobium sp. CCC2.4

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D RHM62_07915 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RHM62_14040 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D RHM62_02045 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D RHM62_06160 helix-turn-helix domain-containing protein K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator C LysR family D RHM62_14225 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D RHM62_12485 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D RHM62_14480 nhaR; transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D RHM62_05270 LysR substrate-binding domain-containing protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D RHM62_07605 CysB family HTH-type transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D RHM62_07005 CysB family HTH-type transcriptional regulator K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D RHM62_09515 LysR substrate-binding domain-containing protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D RHM62_03935 LysR substrate-binding domain-containing protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT C DeoR family D RHM62_07300 DeoR/GlpR family DNA-binding transcription regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D RHM62_16165 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D RHM62_11645 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D RHM62_09700 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D RHM62_15010 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D RHM62_15495 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator C TetR/AcrR family D RHM62_05050 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor C Lrp/AsnC family D RHM62_01705 Lrp/AsnC ligand binding domain-containing protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RHM62_03245 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RHM62_05530 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family C MarR family D RHM62_17465 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D RHM62_08755 merR; Hg(II)-responsive transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D RHM62_08455 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C Fur family D RHM62_18165 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family C CRP/FNR family D RHM62_15685 fnr; fumarate/nitrate reduction transcriptional regulator Fnr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D RHM62_16895 helix-turn-helix domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D RHM62_10570 iscR; Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D RHM62_13100 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D RHM62_17120 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D RHM62_07105 SIS domain-containing protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D RHM62_02115 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D RHM62_03570 helix-turn-helix domain-containing protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D RHM62_07385 prpR; propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D RHM62_09715 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D RHM62_10435 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D RHM62_12620 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D RHM62_15805 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR B Ribbon-helix-helix C CopG family D RHM62_03720 nikR; nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D RHM62_01700 putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D RHM62_15790 4Fe-4S binding protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D RHM62_14600 LytTR family DNA-binding domain-containing protein K21696 rcoM; LytTR family transcriptional regulator, CO-responsive transcriptional regulator RcoM D RHM62_14210 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D RHM62_01625 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RHM62_18160 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D RHM62_04980 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D RHM62_09395 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein D RHM62_05585 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D RHM62_04970 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D RHM62_07145 TraR/DksA C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor D RHM62_03140 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D RHM62_17935 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D RHM62_04290 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024 #
Classification taken and modified from TRANSFAC 7.0