+E Transcription factors KO
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Transcription Factors - Aeromonas salmonicida O23A
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D O23A_p0774 cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D O23A_p1662 Arabinose operon regulatory protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D O23A_p3327 Transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D O23A_p0554 Transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D O23A_p3352 Transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D O23A_p1625 Transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D O23A_p1937 Transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D O23A_p0428 AraC-type DNA-binding protein K07506 K07506; AraC family transcriptional regulator
D O23A_p1539 Transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D O23A_p2557 Methylphosphotriester-DNA--protein-cysteine S-methyltransferase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D O23A_p3090 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D O23A_p1669 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D O23A_p2474 Glycine cleavage system transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D O23A_p3549 HTH-type transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D O23A_p4510 Transcriptional regulator K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D O23A_p1622 Transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D O23A_p2924 Transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D O23A_p3557 Transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D O23A_p2058 Transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D O23A_p0290 Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D O23A_p4221 Chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D O23A_p1052 Regulatory protein CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D O23A_p3047 Alkanesulfonate utilization operon LysR-family regulator CbI K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D O23A_p1044 Transcriptional regulator K18927 lldR; LysR family transcriptional regulator, L-lactate utilization regulator
D O23A_p1628 Transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D O23A_p1250 Transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D O23A_p1909 Transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D O23A_p1914 Glycerol-3-phosphate regulon repressor GlpR K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D O23A_p4376 Glucitol operon repressor K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
C LacI family
D O23A_p2009 Galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D O23A_p3915 Galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D O23A_p1331 Fructose repressor FruR K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D O23A_p2261 Sucrose operon repressor ScrR K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D O23A_p3164 Trehalose operon transcriptional repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D O23A_p1361 Ribose operon repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D O23A_p3721 Purine nucleotide synthesis repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D O23A_p3413 Gluconate utilization system Gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D O23A_p3502 Evolved beta-D-galactosidase transcriptional repressor K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
D O23A_p2220 Maltose regulon regulatory protein MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D O23A_p3724 Putative transcriptional regulator of N-Acetylglucosamine utilization K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D O23A_p4039 Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D O23A_p1586 Transcriptional regulator for fatty acid degradation FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D O23A_p3214 Transcriptional repressor for pyruvate dehydrogenase complex K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D O23A_p4266 Transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D O23A_p0649 Transcription repressor of multidrug efflux pump acrAB operon K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D O23A_p3606 Transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D O23A_p3544 Transcriptional regulator SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D O23A_p2827 Quorum-sensing regulator of virulence HapR K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D O23A_p2862 Transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D O23A_p4028 Unsaturated fatty acid biosynthesis repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D O23A_p3955 Regulatory protein AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D O23A_p1711 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D O23A_p4386 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D O23A_p2870 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
D O23A_p0386 Transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D O23A_p4383 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D O23A_p3781 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D O23A_p4498 Transcriptional regulator ZntR K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D O23A_p4411 Transcriptional regulator MerR K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D O23A_p0886 Redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D O23A_p2525 Transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D O23A_p2040 Ferric uptake regulation protein FUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
D O23A_p0542 Transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D O23A_p2685 Cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D O23A_p1372 Fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D O23A_p1812 Iron-sulfur cluster regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D O23A_p3460 Nitrite-sensitive transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D O23A_p2979 Nitrite-sensitive transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D O23A_p2952 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D O23A_p0551 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D O23A_p3076 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D O23A_p3070 Arsenical resistance operon repressor K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D O23A_p2923 Transcriptional regulator ArsR K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D O23A_p3294 Transcriptional regulator yidN K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D O23A_p0525 Phosphogluconate repressor HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D O23A_p3980 Biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D O23A_p4526 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D O23A_p4171 sugar-phosphate stress protein SgrR K11925 sgrR; SgrR family transcriptional regulator
D O23A_p2285 Putrescine utilization regulator K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D O23A_p0719 Flagellar regulatory protein FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D O23A_p0400 sigma-54-dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D O23A_p1731 sigma-54-dependent transcriptional regulator K11908 vasH; sigma-54 dependent transcriptional regulator
D O23A_p3725 Anaerobic nitric oxide reductase transcription regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator
D O23A_p1111 Formate hydrogenlyase transcriptional activator K15836 fhlA; formate hydrogenlyase transcriptional activator
D O23A_p3003 Sugar diacid utilization regulator SdaR K02647 cdaR; carbohydrate diacid regulator
D O23A_p0437 C protein K07726 K07726; putative transcriptional regulator
D O23A_p0813 C protein K07726 K07726; putative transcriptional regulator
D O23A_p2692 Transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D O23A_p4257 Methionine repressor MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D O23A_p2833 Proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D O23A_p2486 Cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D O23A_p3663 partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D O23A_p2752 Transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D O23A_p3931 Arginine pathway regulatory protein ArgR K03402 argR; transcriptional regulator of arginine metabolism
D O23A_p2989 Arginine pathway regulatory protein ArgR K03402 argR; transcriptional regulator of arginine metabolism
D O23A_p2047 N-acetylglucosamine-6P-responsive transcriptional repressor NagC K02565 nagC; N-acetylglucosamine repressor
D O23A_p1599 Mlc transcriptional repressor K15545 mlc; transcriptional regulator of PTS gene
D O23A_p4214 Mannitol operon repressor K02562 mtlR; mannitol operon repressor
D O23A_p1689 Transcriptional repressor protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D O23A_p2426 Transcriptional activator of cad operon K03765 cadC; transcriptional activator of cad operon
D O23A_p2770 Glycine cleavage system transcriptional antiactivator GcvR K03567 gcvR; glycine cleavage system transcriptional repressor
D O23A_p1697 Psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D O23A_p1694 Phage shock protein C K03973 pspC; phage shock protein C
D O23A_p3361 Glycerol metabolism operon regulatory protein K05880 dhaR; transcriptional activator for dhaKLM operon
D O23A_p0750 Regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D O23A_p0483 Putative transcriptional regulator K07733 alpA; prophage regulatory protein
D O23A_p3058 Transcriptional regulator K07734 paiB; transcriptional regulator
D O23A_p0351 protein YqgE K07735 algH; putative transcriptional regulator
D O23A_p1472 DksA-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor
D O23A_p3873 RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D O23A_p2817 RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D O23A_p0153 Ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D O23A_p0059 Curlin genes transcriptional activator K11926 crl; sigma factor-binding protein Crl
D O23A_p0818 transcriptional regulator K22302 dicC; transcriptional repressor of cell division inhibition gene dicB
D O23A_p3244 Cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: October 29, 2024
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Classification taken and modified from TRANSFAC 7.0