+D GENES KO
#
KEGG Orthology (KO) - Acinetobacter variabilis
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:avb00010]
D RYU24_00950 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RYU24_09700 fbp_2; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RYU24_17880 fba; fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RYU24_02990 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RYU24_11030 epD; D-erythrose 4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RYU24_20300 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RYU24_17900 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RYU24_02590 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D RYU24_14250 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RYU24_13140 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D RYU24_29030 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RYU24_29020 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RYU24_05180 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_21870 lpdG; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_15010 adhC; S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RYU24_08450 dhaT; alcohol dehydrogenase EutG K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D RYU24_12910 gbsB; alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D RYU24_00560 yjgB; alcohol dehydrogenase K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183]
D RYU24_12660 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYU24_01120 aldA; aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D RYU24_28850 acsA2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYU24_13280 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYU24_23600 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RYU24_21650 pckG; phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
C 00020 Citrate cycle (TCA cycle) [PATH:avb00020]
D RYU24_21940 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RYU24_14060 acnB; aconitate hydratase B K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RYU24_19730 icd2; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RYU24_21890 sucA; 2-oxoglutarate dehydrogenase subunit E1 K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RYU24_21880 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RYU24_05180 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_21870 lpdG; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_21850 succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RYU24_21860 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RYU24_27840 cat1; acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D RYU24_21910 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RYU24_21900 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RYU24_21930 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RYU24_21920 sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RYU24_26210 fumA; fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D RYU24_16870 fumC; fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RYU24_05090 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RYU24_21650 pckG; phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RYU24_29030 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RYU24_29020 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:avb00030]
D RYU24_00950 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RYU24_24450 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RYU24_18750 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RYU24_12810 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D RYU24_17380 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D RYU24_23600 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RYU24_08640 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RYU24_16440 gcd; glucose dehydrogenase K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2]
D RYU24_19240 tkrA; bifunctional glyoxylate/hydroxypyruvate reductase B K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D RYU24_17880 fba; fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RYU24_09700 fbp_2; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:avb00040]
D RYU24_00940 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RYU24_00930 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RYU24_24450 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:avb00051]
D RYU24_00980 manB; bifunctional protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RYU24_23600 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RYU24_09700 fbp_2; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RYU24_01350 phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D RYU24_17880 fba; fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RYU24_02990 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RYU24_22380 dhaL; dihydroxyacetone kinase K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15]
D RYU24_01360 fruA; PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
C 00052 Galactose metabolism [PATH:avb00052]
D RYU24_00960 galE_1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RYU24_16880 galE_2; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RYU24_00930 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RYU24_23600 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00053 Ascorbate and aldarate metabolism [PATH:avb00053]
D RYU24_00940 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RYU24_12660 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:avb00500]
D RYU24_00930 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RYU24_22860 otsA; trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D RYU24_22850 otsB; trehalose 6-phosphate phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D RYU24_23600 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RYU24_00950 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:avb00520]
D RYU24_26140 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RYU24_01050 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RYU24_28970 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D RYU24_23340 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D RYU24_01060 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RYU24_30010 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D RYU24_29760 gph2; phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D RYU24_12310 phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D RYU24_12320 mpg1; nucleotidyltransferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D RYU24_24670 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RYU24_12930 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RYU24_00690 wbpP; UDP-GlkcNAc C4 epimerase WbpP K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-]
D RYU24_00680 wbpO; nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D RYU24_00880 fnlA; UDP-N-acetylglucosamine 4,6-dehydratase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D RYU24_23600 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RYU24_00930 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RYU24_00940 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RYU24_00960 galE_1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RYU24_16880 galE_2; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RYU24_00950 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RYU24_00980 manB; bifunctional protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
C 00620 Pyruvate metabolism [PATH:avb00620]
D RYU24_28850 acsA2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYU24_13280 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYU24_29030 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RYU24_29020 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RYU24_05180 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_21870 lpdG; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_27160 acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D RYU24_08450 dhaT; alcohol dehydrogenase EutG K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D RYU24_12910 gbsB; alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D RYU24_15010 adhC; S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RYU24_00560 yjgB; alcohol dehydrogenase K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183]
D RYU24_26180 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RYU24_26190 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RYU24_06310 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RYU24_16970 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RYU24_16980 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RYU24_24790 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RYU24_12030 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D RYU24_12660 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYU24_01120 aldA; aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D RYU24_27840 cat1; acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D RYU24_19870 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D RYU24_27430 ycbL; MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D RYU24_19100 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D RYU24_15940 glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D RYU24_19240 tkrA; bifunctional glyoxylate/hydroxypyruvate reductase B K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D RYU24_20890 sfcA; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D RYU24_09170 maeB; malate dehydrogenase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D RYU24_05090 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RYU24_26210 fumA; fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D RYU24_16870 fumC; fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RYU24_00410 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RYU24_21650 pckG; phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RYU24_13140 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D RYU24_12650 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D RYU24_06790 fadA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_06850 thlA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_12840 fadI; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_15230 thlA_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_26280 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:avb00630]
D RYU24_09000 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D RYU24_28850 acsA2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYU24_13280 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYU24_12650 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D RYU24_05090 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RYU24_21940 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RYU24_14060 acnB; aconitate hydratase B K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RYU24_06790 fadA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_06850 thlA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_12840 fadI; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_15230 thlA_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_26950 kat; catalase K03781 katE; catalase [EC:1.11.1.6]
D RYU24_29490 katB; catalase K03781 katE; catalase [EC:1.11.1.6]
D RYU24_22930 katE; catalase HPII K03781 katE; catalase [EC:1.11.1.6]
D RYU24_15940 glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D RYU24_19240 tkrA; bifunctional glyoxylate/hydroxypyruvate reductase B K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D RYU24_27340 hprA; glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D RYU24_27180 ppaX; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D RYU24_28100 gph; phosphoglycolate phosphatase, bacterial K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D RYU24_07210 hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D RYU24_20660 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYU24_10530 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RYU24_05180 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_21870 lpdG; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_15070 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D RYU24_05890 hyi; hydroxypyruvate isomerase K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D RYU24_26590 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RYU24_26490 purU1; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:avb00640]
D RYU24_28850 acsA2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYU24_13280 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYU24_26180 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RYU24_26190 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RYU24_05180 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_21870 lpdG; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_15890 dcaE; enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RYU24_28310 fadB; fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D RYU24_06780 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RYU24_06310 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RYU24_16970 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RYU24_16980 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RYU24_24790 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RYU24_11680 gabT; 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D RYU24_21860 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RYU24_21850 succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RYU24_17270 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D RYU24_07020 acnA; Fe/S-dependent 2-methylisocitrate dehydratase AcnD K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117]
D RYU24_22590 putative methylaconitate Delta-isomerase PrpF K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-]
D RYU24_14060 acnB; aconitate hydratase B K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RYU24_17280 prpB; 2-methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
C 00650 Butanoate metabolism [PATH:avb00650]
D RYU24_06790 fadA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_06850 thlA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_12840 fadI; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_15230 thlA_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_15900 dcaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RYU24_28310 fadB; fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D RYU24_06780 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RYU24_15890 dcaE; enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RYU24_27160 acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D RYU24_21910 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RYU24_21900 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RYU24_21930 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RYU24_21920 sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RYU24_11680 gabT; 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D RYU24_01990 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYU24_11690 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYU24_27840 cat1; acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D RYU24_19580 mvaB; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D RYU24_19590 atoD_1; succinyl-CoA--3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RYU24_23210 atoD_2; succinyl-CoA--3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RYU24_19600 atoA_1; succinyl-CoA--3-ketoacid-CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D RYU24_23220 atoA_2; succinyl-CoA--3-ketoacid-CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D RYU24_30080 hypothetical protein K18369 adh2; alcohol dehydrogenase [EC:1.1.1.-]
D RYU24_25530 ilvI; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RYU24_25520 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:avb00660]
D RYU24_25530 ilvI; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RYU24_25520 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RYU24_21860 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RYU24_21850 succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RYU24_26850 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RYU24_26840 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RYU24_26820 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:avb00562]
D RYU24_04240 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RYU24_20930 3-phytase K01083 E3.1.3.8; 3-phytase [EC:3.1.3.8]
D RYU24_02990 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:avb00190]
D RYU24_07350 nuoA; NADH-quinone oxidoreductase subunit K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D RYU24_07360 nuoB; NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D RYU24_07370 nuoC; NADH-quinone oxidoreductase subunit C/D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D RYU24_07380 nuoE; NADH-quinone oxidoreductase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D RYU24_07390 nuoF; NADH-quinone oxidoreductase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D RYU24_07400 nuoG; NADH-quinone oxidoreductase K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D RYU24_07410 nuoH; NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D RYU24_07420 nuoI; NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D RYU24_07430 nuoJ; NADH dehydrogenase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D RYU24_07440 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D RYU24_07450 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D RYU24_07460 nuoM; NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D RYU24_07470 nuoN; NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D RYU24_11130 ndh; NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D RYU24_21910 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RYU24_21900 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RYU24_21930 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RYU24_21920 sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RYU24_13080 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RYU24_13090 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D RYU24_13100 cyoC; cytochrome o ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D RYU24_13110 cyoB; cytochrome ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D RYU24_13120 cyoA; ubiquinol oxidase subunit 2 K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D RYU24_14320 cydA; cytochrome bd oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RYU24_14870 cioA; cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RYU24_14310 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RYU24_14880 cioB; ubiquinol oxidase subunit II, cyanide insensitive K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RYU24_01930 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RYU24_01950 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RYU24_01940 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RYU24_01920 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RYU24_01960 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RYU24_01890 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RYU24_01910 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RYU24_01900 atpE; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RYU24_02290 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D RYU24_29550 ppk_3; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RYU24_01180 ppk_1; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RYU24_22160 ppk_2; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:avb00680]
D RYU24_15010 adhC; S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RYU24_24490 esd; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D RYU24_10530 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RYU24_27340 hprA; glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D RYU24_14250 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RYU24_00410 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RYU24_05090 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RYU24_22380 dhaL; dihydroxyacetone kinase K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15]
D RYU24_17880 fba; fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RYU24_09700 fbp_2; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RYU24_26180 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RYU24_26190 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RYU24_28850 acsA2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYU24_13280 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYU24_13140 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D RYU24_02590 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D RYU24_03930 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RYU24_09490 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RYU24_29530 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D RYU24_22630 thrH; phosphoserine phosphatase K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
C 00910 Nitrogen metabolism [PATH:avb00910]
D RYU24_23100 crnA; MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D RYU24_23070 nasA; nitrate reductase K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-]
D RYU24_23080 nasD; nitrate reductase K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4]
D RYU24_23090 nasB; nitrite reductase large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D RYU24_18830 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D RYU24_11800 gdhA_1; glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D RYU24_21440 gdhA_2; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RYU24_20660 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYU24_03460 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RYU24_03470 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RYU24_16250 cynS; cyanate hydratase K01725 cynS; cyanate lyase [EC:4.2.1.104]
D RYU24_22220 cynT; carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D RYU24_22480 carbonic anhydrase K01674 cah; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:avb00920]
D RYU24_10110 cysP_1; ABC transporter permease K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D RYU24_10120 cysP_2; ABC transporter permease K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D RYU24_03290 sbp; ABC transporter permease K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D RYU24_10090 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D RYU24_10080 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D RYU24_10070 cysA; sulfate/thiosulfate import ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D RYU24_29830 ssuA2; sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RYU24_29840 sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RYU24_13230 sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RYU24_29860 ssuC_2; sulfonate ABC transporter K15554 ssuC; sulfonate transport system permease protein
D RYU24_13220 ssuC_1; ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D RYU24_29870 ssuB; aliphatic sulfonate ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RYU24_29850 ssuD_3; alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D RYU24_01480 ssuD_1; alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D RYU24_28800 msuE; FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D RYU24_21800 cysNC; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D RYU24_21810 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RYU24_18010 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D RYU24_22640 cysH; phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D RYU24_07970 cysJ; membrane protein K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D RYU24_06820 cysI; sulfite reductase K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D RYU24_29460 rhdA; sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RYU24_00760 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RYU24_18390 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RYU24_15170 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RYU24_26290 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RYU24_14390 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D RYU24_28810 ssuD_2; dimethyl sulfone monooxygenase SfnG K17228 sfnG; dimethylsulfone monooxygenase [EC:1.14.14.35]
D RYU24_15460 long-chain-fatty-acid--CoA ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D RYU24_06070 alkK; acyl-CoA synthetase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D RYU24_25000 acdB_2; acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D RYU24_04170 mmgC; acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D RYU24_25010 acdA_3; acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:avb00061]
D RYU24_06310 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RYU24_16970 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RYU24_16980 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RYU24_24790 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RYU24_23890 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D RYU24_23910 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RYU24_23810 fabB; 3-oxoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RYU24_12850 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYU24_21550 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYU24_23900 fabG; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYU24_18090 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RYU24_25710 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RYU24_02260 fadD_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RYU24_16000 fadD_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:avb00071]
D RYU24_06790 fadA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_06850 thlA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_12840 fadI; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_15230 thlA_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_28320 fadA_2; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RYU24_28310 fadB; fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D RYU24_06780 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RYU24_15890 dcaE; enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RYU24_14610 acadM; acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RYU24_14910 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RYU24_04780 fadE_1; acyl-CoA dehydrogenase K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8]
D RYU24_10850 acadL; acyl-CoA dehydrogenase K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8]
D RYU24_20470 fadE_2; acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D RYU24_09120 gcdH_1; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYU24_15810 gcdH_2; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYU24_02260 fadD_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RYU24_16000 fadD_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RYU24_14800 alkM; alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3]
D RYU24_27040 hcaD; 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D RYU24_22120 rubB; pyridine nucleotide-disulfide oxidoreductase K05297 rubB; rubredoxin---NAD+ reductase [EC:1.18.1.1]
D RYU24_15010 adhC; S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RYU24_08450 dhaT; alcohol dehydrogenase EutG K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D RYU24_12910 gbsB; alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D RYU24_12660 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:avb00561]
D RYU24_26590 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RYU24_12660 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYU24_22380 dhaL; dihydroxyacetone kinase K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15]
D RYU24_23230 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RYU24_04380 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D RYU24_22650 O-acetyltransferase K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75]
D RYU24_03820 lip_1; lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D RYU24_03830 lip_2; lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
C 00564 Glycerophospholipid metabolism [PATH:avb00564]
D RYU24_19330 gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D RYU24_04380 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D RYU24_17420 pldA; phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D RYU24_24900 ugpQ; glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D RYU24_18150 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RYU24_05160 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RYU24_29450 psd; phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D RYU24_28250 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D RYU24_01070 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D RYU24_06690 plD_1; phospholipase D family protein K06132 clsC; cardiolipin synthase C [EC:2.7.8.-]
D RYU24_15000 plD_2; phospholipase D family protein K06132 clsC; cardiolipin synthase C [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:avb00565]
D RYU24_17420 pldA; phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
D RYU24_17420 pldA; phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D RYU24_17420 pldA; phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:avb00592]
D RYU24_17420 pldA; phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D RYU24_28320 fadA_2; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:avb01040]
D RYU24_24910 olE1; fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D RYU24_15480 des6_1; linoleoyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
D RYU24_18880 des6_2; linoleoyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
D RYU24_15470 hmp_1; oxidoreductase K22770 K22770; stearoyl-CoA 9-desaturase NADPH oxidoreductase
D RYU24_18890 hmp_2; oxidoreductase K22770 K22770; stearoyl-CoA 9-desaturase NADPH oxidoreductase
D RYU24_22210 tesA; arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D RYU24_04390 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D RYU24_05230 acyl-CoA thioesterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:avb00230]
D RYU24_02770 aspP; NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D RYU24_23600 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RYU24_08640 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RYU24_19270 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RYU24_18310 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D RYU24_09600 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RYU24_11350 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D RYU24_09850 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D RYU24_09610 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D RYU24_30030 purK; N5-carboxyaminoimidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D RYU24_30040 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D RYU24_29630 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D RYU24_20060 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RYU24_18300 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RYU24_22100 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RYU24_01200 NAD 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D RYU24_19940 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RYU24_18020 yrfG; haloacid dehalogenase K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D RYU24_02920 UPF0345 protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D RYU24_08720 laccase domain protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RYU24_30150 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D RYU24_28980 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RYU24_25480 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RYU24_26330 non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D RYU24_04980 xpt; xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D RYU24_01610 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RYU24_18710 yfeJ_2; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RYU24_30140 guaD; guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D RYU24_03690 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D RYU24_07310 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RYU24_07280 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RYU24_09810 dgt; deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D RYU24_03670 spoT; RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RYU24_06300 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RYU24_05960 relA; GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D RYU24_17630 cyaA; guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D RYU24_11080 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RYU24_10960 add; adenine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2]
D RYU24_21480 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RYU24_25300 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RYU24_02760 icc; 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D RYU24_06580 apaH; bis(5'-nucleosyl)-tetraphosphatase, symmetrical K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D RYU24_21800 cysNC; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D RYU24_21810 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RYU24_16570 aba2; monooxygenase K16839 hpxO; FAD-dependent urate hydroxylase [EC:1.14.13.113]
D RYU24_11170 yedX; 5-hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RYU24_16620 5-hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RYU24_16630 uao; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase K16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97]
D RYU24_16640 cda1; chitin deacetylase K16842 hpxB; allantoinase [EC:3.5.2.5]
D RYU24_16580 alc; putative allantoicase K01477 alc; allantoicase [EC:3.5.3.4]
D RYU24_16590 allA; ureidoglycolate lyase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3]
D RYU24_16660 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D RYU24_16670 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D RYU24_16680 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00240 Pyrimidine metabolism [PATH:avb00240]
D RYU24_08830 carB; carbamoyl-phosphate synthase (glutamine-hydrolyzing) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RYU24_08840 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RYU24_19640 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RYU24_19630 pyrX; aspartate carbamoyltransferase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D RYU24_21050 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D RYU24_19290 pyrD; dihydroorotate dehydrogenase (quinone) K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D RYU24_29170 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D RYU24_12580 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D RYU24_18180 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D RYU24_25480 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RYU24_25300 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RYU24_22680 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D RYU24_14230 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D RYU24_12540 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D RYU24_01200 NAD 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D RYU24_19940 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RYU24_02920 UPF0345 protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D RYU24_07480 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D RYU24_07750 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D RYU24_07310 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RYU24_07280 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RYU24_10150 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D RYU24_23610 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RYU24_26410 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RYU24_20540 rutA; pyrimidine monooxygenase RutA K09018 rutA; pyrimidine oxygenase [EC:1.14.99.46]
D RYU24_16320 rutF_1; flavin reductase K09024 rutF; flavin reductase [EC:1.5.1.-]
D RYU24_20510 rutF_2; FMN reductase (NADH) RutF K09024 rutF; flavin reductase [EC:1.5.1.-]
D RYU24_20530 rutB; peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB K09020 rutB; ureidoacrylate peracid hydrolase [EC:3.5.1.110]
D RYU24_20520 rutC; putative aminoacrylate peracid reductase RutC K09021 rutC; aminoacrylate peracid reductase
D RYU24_20550 rutD; putative aminoacrylate hydrolase RutD K09023 rutD; aminoacrylate hydrolase [EC:3.5.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:avb00250]
D RYU24_10330 aspC; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYU24_10170 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D RYU24_26750 ansA; L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D RYU24_11300 aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RYU24_17670 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D RYU24_21030 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RYU24_28230 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RYU24_11080 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RYU24_20060 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RYU24_19640 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RYU24_11680 gabT; 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D RYU24_01990 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYU24_11690 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYU24_03460 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RYU24_03470 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RYU24_11800 gdhA_1; glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D RYU24_21440 gdhA_2; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RYU24_17710 putA; bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RYU24_20660 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYU24_08830 carB; carbamoyl-phosphate synthase (glutamine-hydrolyzing) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RYU24_08840 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RYU24_22390 glsA; glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D RYU24_01050 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RYU24_19270 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:avb00260]
D RYU24_11010 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RYU24_26720 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RYU24_02660 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RYU24_28470 thrB; homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D RYU24_22630 thrH; phosphoserine phosphatase K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
D RYU24_02650 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D RYU24_10530 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RYU24_27340 hprA; glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D RYU24_15940 glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D RYU24_19240 tkrA; bifunctional glyoxylate/hydroxypyruvate reductase B K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D RYU24_26590 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RYU24_02590 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D RYU24_03930 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RYU24_09490 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RYU24_29530 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D RYU24_05180 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_21870 lpdG; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_15070 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D RYU24_05160 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RYU24_15760 betA; oxygen-dependent choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D RYU24_15750 betB; NAD/NADP-dependent betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D RYU24_17390 ilvA; L-threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RYU24_11870 alr2; alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D RYU24_24800 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RYU24_24850 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RYU24_14470 trpB2; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RYU24_20220 dat; aspartate aminotransferase family protein K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D RYU24_20210 ddc; L-2,4-diaminobutyrate decarboxylase K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]
C 00270 Cysteine and methionine metabolism [PATH:avb00270]
D RYU24_00760 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RYU24_18390 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RYU24_15170 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RYU24_04480 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RYU24_22310 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RYU24_16310 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RYU24_18770 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RYU24_29890 mtnN; 5'-nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D RYU24_08720 laccase domain protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RYU24_16470 N-ethylammeline chlorohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D RYU24_23160 tyrB; aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D RYU24_13520 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RYU24_09210 sahH; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RYU24_11010 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RYU24_26720 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RYU24_02660 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RYU24_26290 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RYU24_03150 metY; O-acetylhomoserine aminocarboxypropyltransferase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D RYU24_14390 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D RYU24_25190 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RYU24_29380 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D RYU24_29140 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D RYU24_10330 aspC; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYU24_29460 rhdA; sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RYU24_11870 alr2; alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D RYU24_07610 dcyD; 1-aminocyclopropane-1-carboxylate deaminase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D RYU24_05090 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RYU24_05930 cysM; cysteine synthase K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D RYU24_03930 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RYU24_09490 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:avb00280]
D RYU24_25190 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RYU24_05180 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_21870 lpdG; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_14610 acadM; acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RYU24_14910 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RYU24_19540 ivd; acyl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D RYU24_15890 dcaE; enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RYU24_28310 fadB; fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D RYU24_06780 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RYU24_28320 fadA_2; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RYU24_14370 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D RYU24_20490 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D RYU24_12660 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYU24_19570 accC2; 3-methylcrotonyl-CoA carboxylase subunit alpha K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D RYU24_19550 mccC2; methylcrotonoyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D RYU24_19560 paaG5; enoyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D RYU24_19580 mvaB; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D RYU24_19590 atoD_1; succinyl-CoA--3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RYU24_23210 atoD_2; succinyl-CoA--3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RYU24_19600 atoA_1; succinyl-CoA--3-ketoacid-CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D RYU24_23220 atoA_2; succinyl-CoA--3-ketoacid-CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D RYU24_06790 fadA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_06850 thlA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_12840 fadI; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_15230 thlA_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:avb00290]
D RYU24_17390 ilvA; L-threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RYU24_26850 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RYU24_26840 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RYU24_26820 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D RYU24_25530 ilvI; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RYU24_25520 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RYU24_25510 ilvC; ketol-acid reductoisomerase (NADP(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RYU24_00340 ilvD1; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RYU24_00350 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RYU24_25190 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RYU24_11300 aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RYU24_26280 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:avb00300]
D RYU24_02660 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RYU24_11010 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RYU24_26720 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RYU24_29610 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RYU24_00500 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D RYU24_10020 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D RYU24_19910 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RYU24_11330 dapL; succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D RYU24_07900 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RYU24_09330 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RYU24_09320 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D RYU24_03330 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RYU24_03340 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:avb00310]
D RYU24_21880 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RYU24_05180 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_21870 lpdG; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_09120 gcdH_1; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYU24_15810 gcdH_2; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYU24_15890 dcaE; enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RYU24_28310 fadB; fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D RYU24_06780 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RYU24_06790 fadA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_06850 thlA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_12840 fadI; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_15230 thlA_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_11870 alr2; alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D RYU24_01990 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYU24_11690 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYU24_16010 caiB; CoA transferase K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-]
D RYU24_12660 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:avb00220]
D RYU24_17300 argF; ornithine carbamoyltransferase, catabolic K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D RYU24_21030 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RYU24_28230 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RYU24_15530 urea carboxylase K01941 uca; urea carboxylase [EC:6.3.4.6]
D RYU24_15600 allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54]
D RYU24_16660 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D RYU24_16670 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D RYU24_16680 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D RYU24_22390 glsA; glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D RYU24_20660 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYU24_08830 carB; carbamoyl-phosphate synthase (glutamine-hydrolyzing) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RYU24_08840 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RYU24_11800 gdhA_1; glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D RYU24_21440 gdhA_2; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RYU24_10330 aspC; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYU24_11300 aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RYU24_29820 argA; amino-acid acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D RYU24_24720 argJ; arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D RYU24_23590 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D RYU24_17360 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D RYU24_19910 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:avb00330]
D RYU24_12660 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYU24_17010 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RYU24_11820 astA; arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D RYU24_11840 astB; N-succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D RYU24_11810 astC; acetylornithine aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D RYU24_11830 astD; N-succinylglutamate 5-semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D RYU24_11850 astE; succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D RYU24_06330 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D RYU24_17710 putA; bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RYU24_20250 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D RYU24_26170 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D RYU24_10330 aspC; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:avb00340]
D RYU24_24660 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D RYU24_11070 hisZ; ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D RYU24_03130 hisI; histidine biosynthesis bifunctional protein HisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D RYU24_28430 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me thylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D RYU24_28410 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D RYU24_28480 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D RYU24_28400 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D RYU24_24640 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYU24_10890 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYU24_24650 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D RYU24_12660 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:avb00350]
D RYU24_10330 aspC; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYU24_24640 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYU24_10890 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYU24_23160 tyrB; aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D RYU24_23140 hpd; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D RYU24_23190 hmgA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D RYU24_23180 hmgB; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D RYU24_15010 adhC; S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RYU24_08450 dhaT; alcohol dehydrogenase EutG K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D RYU24_12910 gbsB; alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D RYU24_07170 5-carboxymethyl-2-hydroxymuconate isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
D RYU24_17830 hypothetical protein K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D RYU24_01990 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYU24_11690 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:avb00360]
D RYU24_24310 paaK; phenylacetate-coenzyme A ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D RYU24_11160 phenylacetic acid degradation protein PaaD K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D RYU24_24380 paaA; phenylacetic acid degradation protein K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]
D RYU24_24370 paaB; phenylacetate-CoA oxygenase subunit PaaB K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
D RYU24_24360 paaC; phenylacetate-CoA oxygenase subunit PaaI K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
D RYU24_24350 paaD; phenylacetate-CoA oxygenase subunit PaaJ K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
D RYU24_24340 paaE; phenylacetic acid degradation protein K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
D RYU24_15950 paaG_2; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D RYU24_24330 paaG_3; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D RYU24_24390 paaN; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase K02618 paaZ; oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase [EC:3.3.2.12 1.2.1.91]
D RYU24_15890 dcaE; enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RYU24_15900 dcaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RYU24_10330 aspC; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYU24_24640 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYU24_10890 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYU24_23160 tyrB; aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D RYU24_23140 hpd; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D RYU24_14720 dadA3; D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D RYU24_23860 dadA; D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D RYU24_26970 hypothetical protein K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D RYU24_17010 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RYU24_27090 hcaE; 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha K05708 hcaE; 3-phenylpropionate/trans-cinnamate dioxygenase subunit alpha [EC:1.14.12.19]
D RYU24_27080 hcaF; 3-phenylpropionate/cinnamic acid dioxygenase subunit beta K05709 hcaF; 3-phenylpropionate/trans-cinnamate dioxygenase subunit beta [EC:1.14.12.19]
D RYU24_27070 hcaC; 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component
D RYU24_27040 hcaD; 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D RYU24_27060 hcaB; 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase K05711 hcaB; 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase [EC:1.3.1.87]
D RYU24_08110 hypothetical protein K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
D RYU24_27050 mhpB; 2,3-dihydroxyphenylpropionate/2, 3-dihydroxicinnam ic acid 1,2-dioxygenase K05713 mhpB; 2,3-dihydroxyphenylpropionate 1,2-dioxygenase [EC:1.13.11.16]
D RYU24_27170 mhpD; 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00380 Tryptophan metabolism [PATH:avb00380]
D RYU24_21880 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RYU24_05180 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_21870 lpdG; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_09120 gcdH_1; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYU24_15810 gcdH_2; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYU24_15890 dcaE; enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RYU24_28310 fadB; fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D RYU24_06780 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RYU24_06790 fadA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_06850 thlA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_12840 fadI; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_15230 thlA_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_12660 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYU24_17010 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RYU24_26950 kat; catalase K03781 katE; catalase [EC:1.11.1.6]
D RYU24_29490 katB; catalase K03781 katE; catalase [EC:1.11.1.6]
D RYU24_22930 katE; catalase HPII K03781 katE; catalase [EC:1.11.1.6]
D RYU24_26970 hypothetical protein K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:avb00400]
D RYU24_14760 aroF_1; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RYU24_15030 aroF_2; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RYU24_03440 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D RYU24_16960 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D RYU24_04180 aroE; shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D RYU24_10660 glucose dehydrogenase K05358 quiA; quinate dehydrogenase (quinone) [EC:1.1.5.8]
D RYU24_03430 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D RYU24_10900 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K24018 K24018; cyclohexadieny/prephenate dehydrogenase / 3-phosphoshikimate 1-carboxyvinyltransferase [EC:1.3.1.43 1.3.1.12 2.5.1.19]
D RYU24_14670 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D RYU24_28090 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RYU24_20680 trpG; glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D RYU24_20690 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D RYU24_24860 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D RYU24_20700 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D RYU24_24800 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RYU24_24850 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RYU24_14470 trpB2; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RYU24_10880 pheA; chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D RYU24_10330 aspC; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYU24_24640 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYU24_10890 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYU24_23160 tyrB; aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:avb00410]
D RYU24_08610 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D RYU24_11680 gabT; 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D RYU24_12660 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RYU24_25250 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RYU24_15890 dcaE; enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RYU24_28310 fadB; fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D RYU24_06780 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00430 Taurine and hypotaurine metabolism [PATH:avb00430]
D RYU24_26190 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RYU24_26180 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:avb00450]
D RYU24_04480 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RYU24_22310 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RYU24_16310 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RYU24_23710 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RYU24_21800 cysNC; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D RYU24_21810 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RYU24_07680 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:avb00460]
D RYU24_26750 ansA; L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D RYU24_10530 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:avb00470]
D RYU24_13030 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RYU24_23850 dadX; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RYU24_29100 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RYU24_11870 alr2; alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D RYU24_22390 glsA; glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D RYU24_27460 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RYU24_02720 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RYU24_07610 dcyD; 1-aminocyclopropane-1-carboxylate deaminase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D RYU24_09330 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RYU24_09320 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D RYU24_14720 dadA3; D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D RYU24_23860 dadA; D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:avb00480]
D RYU24_29380 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D RYU24_29140 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D RYU24_02560 pepA; putative cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RYU24_12730 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RYU24_01670 gst3; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RYU24_08100 erd13; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RYU24_11490 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RYU24_18700 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RYU24_19460 gstB; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RYU24_19730 icd2; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RYU24_02020 btuE_1; glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D RYU24_02030 btuE_2; glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D RYU24_11320 gpo; glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:avb00540]
D RYU24_18080 lpxA2; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam ine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RYU24_29060 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RYU24_18100 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RYU24_17790 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RYU24_14780 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RYU24_12390 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RYU24_18610 kdsD; arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D RYU24_14240 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RYU24_18600 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D RYU24_12400 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RYU24_28890 kdtA; 3-deoxy-D-manno-2-octulosonate transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RYU24_25110 htrB_2; lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RYU24_26690 htrB_3; lipid A biosynthesis lauroyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RYU24_09570 htrB_1; lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RYU24_28300 aspH; aspartyl/asparaginyl beta-hydroxylase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:avb00541]
D RYU24_00930 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RYU24_00960 galE_1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RYU24_16880 galE_2; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RYU24_00940 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RYU24_00980 manB; bifunctional protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RYU24_01060 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RYU24_00880 fnlA; UDP-N-acetylglucosamine 4,6-dehydratase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D RYU24_00890 fnlB; UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K19068 wbjC; UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase [EC:1.1.1.367]
D RYU24_00900 wecB; UDP-N-acetyl glucosamine 2-epimerase K24258 wbjD; UDP-N-acetyl-L-fucosamine synthase [EC:5.1.3.28]
D RYU24_00680 wbpO; nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D RYU24_00690 wbpP; UDP-GlkcNAc C4 epimerase WbpP K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-]
C 00550 Peptidoglycan biosynthesis [PATH:avb00550]
D RYU24_24670 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RYU24_12930 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RYU24_29110 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RYU24_02720 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RYU24_03330 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RYU24_29100 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RYU24_03340 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RYU24_18160 ispU; ditrans,polycis-undecaprenyl-diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RYU24_24520 uppP2; undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RYU24_25500 pgpB_2; phosphatidylglycerophosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RYU24_20240 undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RYU24_03350 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RYU24_29120 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RYU24_22170 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RYU24_03370 ponA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RYU24_10790 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D RYU24_21510 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RYU24_03320 ftsI; peptide ABC transporter permease K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RYU24_11140 dacD; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RYU24_19970 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:avb00552]
D RYU24_24520 uppP2; undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RYU24_25500 pgpB_2; phosphatidylglycerophosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RYU24_20240 undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:avb00543]
D RYU24_00760 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RYU24_18390 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:avb00730]
D RYU24_02780 thiC; phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D RYU24_07200 thiED_1; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D RYU24_17570 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RYU24_23280 D-amino-acid oxidase K03153 thiO; glycine oxidase [EC:1.4.3.19]
D RYU24_04230 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RYU24_19420 thiG; thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D RYU24_12700 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D RYU24_18990 thiE; thiamine-phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D RYU24_01080 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D RYU24_25660 engC; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RYU24_20980 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RYU24_20990 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RYU24_21480 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RYU24_28680 thiED_2; aminopyrimidine aminohydrolase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:avb00740]
D RYU24_04220 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RYU24_01110 ribB_1; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RYU24_02500 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RYU24_08580 ribB_2; 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D RYU24_01100 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D RYU24_28820 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D RYU24_02520 ribC; riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D RYU24_29900 ribF; riboflavin biosynthesis protein K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D RYU24_28800 msuE; FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D RYU24_12700 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D RYU24_02770 aspP; NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:avb00750]
D RYU24_28960 pdxH; pyridoxine/pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D RYU24_09130 pdxB; erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D RYU24_09490 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RYU24_06560 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D RYU24_10270 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D RYU24_02650 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:avb00760]
D RYU24_10170 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D RYU24_24710 nadA; quinolinate synthase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D RYU24_29700 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D RYU24_29470 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D RYU24_01200 NAD 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D RYU24_19940 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RYU24_25300 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RYU24_21200 nudC; NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D RYU24_21960 nadE2; NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D RYU24_17250 competence damage-inducible protein A K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D RYU24_20850 hypothetical protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D RYU24_29570 pncA; bifunctional pyrazinamidase/nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D RYU24_14160 npdA; NAD-dependent protein deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D RYU24_10800 nadK; NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D RYU24_20450 sthA; NAD(P)(+) transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D RYU24_05840 pntA1; NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D RYU24_05850 hypothetical protein K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D RYU24_05860 pntB; NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D RYU24_01990 succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RYU24_11690 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:avb00770]
D RYU24_25530 ilvI; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RYU24_25520 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RYU24_25510 ilvC; ketol-acid reductoisomerase (NADP(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RYU24_00340 ilvD1; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RYU24_00350 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RYU24_25260 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D RYU24_25250 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RYU24_24210 coaX; type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D RYU24_05340 dfp; phosphopantothenate synthase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D RYU24_25300 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D RYU24_08750 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D RYU24_02950 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D RYU24_25330 ffp; ACP synthase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D RYU24_25190 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RYU24_08610 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D RYU24_12660 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:avb00780]
D RYU24_23810 fabB; 3-oxoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RYU24_12850 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYU24_21550 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYU24_23900 fabG; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYU24_18090 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RYU24_25710 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RYU24_11990 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D RYU24_24200 birA; biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:avb00785]
D RYU24_08470 lipB; octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D RYU24_20460 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D RYU24_05180 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_21870 lpdG; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_29030 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RYU24_29020 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RYU24_21890 sucA; 2-oxoglutarate dehydrogenase subunit E1 K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RYU24_21880 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RYU24_15070 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:avb00790]
D RYU24_20720 folE; GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D RYU24_20980 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RYU24_20990 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RYU24_01170 phoD; alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D RYU24_13330 folB; 7,8-dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D RYU24_25270 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D RYU24_13340 hypothetical protein K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D RYU24_08920 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D RYU24_23330 dihydropteroate synthase K18824 sul2; dihydropteroate synthase type 2 [EC:2.5.1.15]
D RYU24_26420 folA_2; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RYU24_24780 folC; bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D RYU24_04220 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RYU24_01110 ribB_1; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RYU24_24630 pabB; p-aminobenzoate synthetase K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D RYU24_10130 pabC; aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D RYU24_12490 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RYU24_10010 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D RYU24_10000 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D RYU24_10420 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D RYU24_23050 moaA; cyclic pyranopterin monophosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RYU24_23020 moaCB; bifunctional molybdenum cofactor biosynthesis protein MoaC/MoaB K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RYU24_23030 moaE; molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RYU24_23010 moeA; molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D RYU24_23060 mobA; molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:avb00670]
D RYU24_26420 folA_2; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RYU24_21690 folD; bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RYU24_10530 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RYU24_09600 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RYU24_18300 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RYU24_00330 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RYU24_22310 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RYU24_26410 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RYU24_26490 purU1; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D RYU24_09200 metF; methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RYU24_21380 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:avb00860]
D RYU24_03250 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RYU24_08680 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D RYU24_18980 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RYU24_23270 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RYU24_28200 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D RYU24_28190 hemD; uroporphyrinogen III methyltransferase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D RYU24_20790 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D RYU24_04200 hemF; oxygen-dependent coproporphyrinogen-III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D RYU24_04210 hemN; coproporphyrinogen-III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D RYU24_23820 membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D RYU24_27440 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D RYU24_08400 cysG; siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D RYU24_13080 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RYU24_24880 ATP--cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D RYU24_03620 bfrB; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
D RYU24_24120 bfrA; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:avb00130]
D RYU24_20640 ubiC; putative chorismate pyruvate-lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D RYU24_20630 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D RYU24_21270 ubiF; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D RYU24_29750 ubiG; ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D RYU24_21280 ubiH; ubiquinone biosynthesis protein UbiH K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D RYU24_27740 ubiE; ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D RYU24_13360 coq7; 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D RYU24_04960 NAD(P)H:quinone oxidoreductase type IV K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D RYU24_08730 wrbA; flavodoxin K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D RYU24_23140 hpd; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:avb00900]
D RYU24_04230 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RYU24_18140 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D RYU24_14270 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D RYU24_08650 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D RYU24_14740 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D RYU24_25440 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D RYU24_03700 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D RYU24_06790 fadA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_06850 thlA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_12840 fadI; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_15230 thlA_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_22580 ispA; (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D RYU24_08340 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RYU24_18160 ispU; ditrans,polycis-undecaprenyl-diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D RYU24_12660 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:avb00907]
D RYU24_15890 dcaE; enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RYU24_28310 fadB; fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D RYU24_06780 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RYU24_00560 yjgB; alcohol dehydrogenase K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183]
D RYU24_27210 long-chain-acyl-CoA synthetase K13776 atuH; citronellyl-CoA synthetase [EC:6.2.1.-]
D RYU24_19580 mvaB; hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D RYU24_28320 fadA_2; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D RYU24_18750 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D RYU24_00370 hypothetical protein K04782 pchB; isochorismate pyruvate lyase [EC:4.2.99.21]
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:avb00332]
D RYU24_20250 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D RYU24_26170 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:avb00261]
D RYU24_21800 cysNC; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D RYU24_21810 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RYU24_11010 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RYU24_26720 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RYU24_29610 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RYU24_00500 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:avb00521]
D RYU24_23600 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RYU24_04240 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis [PATH:avb00401]
D RYU24_10900 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K24018 K24018; cyclohexadieny/prephenate dehydrogenase / 3-phosphoshikimate 1-carboxyvinyltransferase [EC:1.3.1.43 1.3.1.12 2.5.1.19]
D RYU24_10330 aspC; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYU24_24640 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYU24_10890 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYU24_23160 tyrB; aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D RYU24_28090 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RYU24_20680 trpG; glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D RYU24_23910 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RYU24_12850 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYU24_21550 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYU24_23900 fabG; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYU24_25710 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D RYU24_23890 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:avb00999]
D RYU24_18770 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RYU24_04180 aroE; shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:avb00362]
D RYU24_15370 benA; benzoate 1,2-dioxygenase large subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-]
D RYU24_15360 benB; benzoate 1,2-dioxygenase small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D RYU24_15350 benC; NADH oxidase K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D RYU24_15340 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-]
D RYU24_15380 catA_1; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D RYU24_15400 catB; muconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
D RYU24_15390 catC; muconolactone Delta-isomerase K03464 catC; muconolactone D-isomerase [EC:5.3.3.4]
D RYU24_15290 catD; 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D RYU24_15320 catI; 3-oxoadipate CoA-transferase subunit A K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
D RYU24_15830 dcaI; 3-oxoadipate CoA-transferase subunit A K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
D RYU24_15310 pcaJ; 3-oxoadipate CoA-transferase subunit B K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
D RYU24_15840 dcaJ; 3-oxoadipate CoA-transferase subunit B K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
D RYU24_28320 fadA_2; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D RYU24_24320 paaJ; acetyl-CoA acetyltransferase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
D RYU24_15300 pcaF; 3-oxoadipyl-CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
D RYU24_27110 2,6-dioxo-6-phenylhexa-3-enoate hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
D RYU24_27170 mhpD; 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D RYU24_27150 mhpE; 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D RYU24_27160 acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D RYU24_20480 pcaC; 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D RYU24_16070 fadK; short-chain-fatty-acid--CoA ligase K04116 aliA; cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-]
D RYU24_16060 acyl-CoA dehydrogenase K04117 aliB; cyclohexanecarboxyl-CoA dehydrogenase [EC:1.3.99.-]
D RYU24_16040 acetoacetyl-CoA reductase K07535 badH; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase [EC:1.1.1.-]
D RYU24_16050 menB; 1,4-dihydroxy-2-naphthoyl-CoA synthase K07536 badI; 2-ketocyclohexanecarboxyl-CoA hydrolase [EC:3.1.2.-]
D RYU24_06780 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RYU24_28310 fadB; fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D RYU24_09120 gcdH_1; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYU24_15810 gcdH_2; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RYU24_15890 dcaE; enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RYU24_15900 dcaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RYU24_06790 fadA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_06850 thlA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_12840 fadI; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_15230 thlA_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:avb00627]
D RYU24_04770 hapE; flavin-binding monooxygenase K10215 ethA; monooxygenase [EC:1.14.13.-]
D RYU24_17010 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RYU24_12030 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D RYU24_15890 dcaE; enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00364 Fluorobenzoate degradation [PATH:avb00364]
D RYU24_15370 benA; benzoate 1,2-dioxygenase large subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-]
D RYU24_15360 benB; benzoate 1,2-dioxygenase small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D RYU24_15350 benC; NADH oxidase K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D RYU24_15340 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-]
D RYU24_15380 catA_1; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D RYU24_15400 catB; muconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
C 00625 Chloroalkane and chloroalkene degradation [PATH:avb00625]
D RYU24_08450 dhaT; alcohol dehydrogenase EutG K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D RYU24_12910 gbsB; alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D RYU24_15010 adhC; S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RYU24_12660 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:avb00361]
D RYU24_15380 catA_1; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D RYU24_15400 catB; muconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
C 00623 Toluene degradation [PATH:avb00623]
D RYU24_15380 catA_1; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D RYU24_15400 catB; muconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
C 00622 Xylene degradation [PATH:avb00622]
D RYU24_15370 benA; benzoate 1,2-dioxygenase large subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-]
D RYU24_15360 benB; benzoate 1,2-dioxygenase small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D RYU24_15350 benC; NADH oxidase K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D RYU24_15340 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-]
D RYU24_27110 2,6-dioxo-6-phenylhexa-3-enoate hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
D RYU24_27150 mhpE; 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D RYU24_27160 acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D RYU24_27170 mhpD; 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00633 Nitrotoluene degradation [PATH:avb00633]
D RYU24_17850 nfnB; NAD(P)H nitroreductase K10679 nfnB; nitroreductase / dihydropteridine reductase [EC:1.-.-.- 1.5.1.34]
C 00642 Ethylbenzene degradation
D RYU24_28320 fadA_2; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:avb00643]
D RYU24_23190 hmgA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D RYU24_23180 hmgB; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D RYU24_17010 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RYU24_27110 2,6-dioxo-6-phenylhexa-3-enoate hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
C 00791 Atrazine degradation [PATH:avb00791]
D RYU24_15600 allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54]
D RYU24_15530 urea carboxylase K01941 uca; urea carboxylase [EC:6.3.4.6]
D RYU24_16660 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D RYU24_16670 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D RYU24_16680 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:avb00930]
D RYU24_14800 alkM; alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3]
D RYU24_15800 dcaA; acyl-CoA dehydrogenase K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-]
D RYU24_15890 dcaE; enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RYU24_28310 fadB; fatty acid oxidation complex subunit alpha K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D RYU24_06780 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation [PATH:avb00621]
D RYU24_27170 mhpD; 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D RYU24_27150 mhpE; 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D RYU24_27160 acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
C 00626 Naphthalene degradation [PATH:avb00626]
D RYU24_08450 dhaT; alcohol dehydrogenase EutG K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D RYU24_12910 gbsB; alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D RYU24_15010 adhC; S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:avb03020]
D RYU24_28000 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RYU24_27990 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RYU24_04750 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RYU24_03680 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:avb03010]
D RYU24_12550 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RYU24_10350 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RYU24_04570 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RYU24_04740 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RYU24_04680 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RYU24_13070 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RYU24_23780 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RYU24_04650 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RYU24_06530 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RYU24_04500 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RYU24_04730 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RYU24_23790 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RYU24_04720 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RYU24_04640 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RYU24_27670 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RYU24_03780 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RYU24_04600 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RYU24_13060 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RYU24_04550 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RYU24_17990 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RYU24_19200 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D RYU24_28040 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RYU24_04540 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RYU24_04510 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RYU24_04520 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RYU24_04630 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RYU24_04660 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RYU24_28020 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RYU24_13050 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RYU24_28030 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RYU24_28050 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RYU24_06540 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RYU24_04610 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RYU24_04700 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RYU24_04580 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RYU24_04760 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RYU24_04670 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RYU24_03810 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RYU24_06220 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RYU24_08350 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RYU24_04560 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RYU24_04530 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RYU24_04620 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RYU24_08630 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D RYU24_08360 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RYU24_26520 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RYU24_04590 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RYU24_04690 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RYU24_04090 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31
D RYU24_19850 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RYU24_23920 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RYU24_26530 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RYU24_30250 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RYU24_06210 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RYU24_r00010 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00100 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00180 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00070 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00130 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00210 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00110 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00140 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00200 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00170 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00080 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00160 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00190 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00120 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00090 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00150 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:avb00970]
D RYU24_t00190 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00840 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00420 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00060 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00220 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00640 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00130 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00020 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00160 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYU24_t00170 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYU24_t00700 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYU24_t00630 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYU24_t00390 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYU24_t00150 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYU24_t00520 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RYU24_t00380 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RYU24_t00530 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RYU24_t00250 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RYU24_t00290 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RYU24_t00270 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RYU24_t00240 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RYU24_t00600 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RYU24_t00320 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RYU24_t00330 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RYU24_t00340 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RYU24_t00310 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RYU24_t00120 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYU24_t00550 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYU24_t00570 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYU24_t00560 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYU24_t00590 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYU24_t00580 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYU24_t00770 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RYU24_t00430 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RYU24_t00040 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RYU24_t00030 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RYU24_t00690 tRNA-His K14226 tRNA-His; tRNA His
D RYU24_t00670 tRNA-His K14226 tRNA-His; tRNA His
D RYU24_t00410 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYU24_t00180 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYU24_t00650 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYU24_t00210 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYU24_t00010 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYU24_t00050 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYU24_t00850 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYU24_t00360 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00440 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00070 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00460 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00500 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00610 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00470 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00480 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00200 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00730 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RYU24_t00740 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RYU24_t00720 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RYU24_t00100 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYU24_t00350 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYU24_t00080 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYU24_t00400 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYU24_t00620 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYU24_t00090 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYU24_t00110 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYU24_t00800 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RYU24_t00810 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RYU24_t00660 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RYU24_t00710 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RYU24_t00680 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RYU24_t00140 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYU24_t00540 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYU24_t00370 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYU24_t00820 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYU24_t00830 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RYU24_t00760 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RYU24_t00790 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RYU24_t00490 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RYU24_t00450 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RYU24_t00750 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RYU24_t00780 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RYU24_t00260 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYU24_t00300 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYU24_t00280 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYU24_t00510 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYU24_t00230 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYU24_03250 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RYU24_22730 gatA; glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RYU24_22740 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RYU24_22720 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RYU24_17770 glnS2; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D RYU24_11020 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RYU24_25090 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RYU24_27280 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RYU24_27290 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RYU24_06110 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RYU24_08390 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RYU24_18620 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RYU24_07680 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RYU24_00330 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RYU24_22420 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RYU24_25550 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RYU24_29910 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RYU24_22080 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RYU24_29430 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RYU24_07800 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RYU24_25430 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RYU24_06240 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RYU24_06250 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RYU24_30000 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RYU24_22040 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:avb03060]
D RYU24_04710 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RYU24_28070 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RYU24_03000 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RYU24_05990 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RYU24_05980 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D RYU24_06000 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RYU24_30220 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RYU24_24740 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RYU24_25690 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RYU24_24240 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RYU24_14550 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D RYU24_10210 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RYU24_29920 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:avb04122]
D RYU24_17570 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RYU24_29460 rhdA; sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RYU24_27520 sirA; hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D RYU24_19380 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D RYU24_16890 tusD; sulfurtransferase TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D RYU24_16920 tusE; sulfurtransferase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D RYU24_20040 trmU; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RYU24_23030 moaE; molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RYU24_23050 moaA; cyclic pyranopterin monophosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RYU24_13310 moeB; molybdopterin biosynthesis protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D RYU24_23020 moaCB; bifunctional molybdenum cofactor biosynthesis protein MoaC/MoaB K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RYU24_19410 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:avb03018]
D RYU24_26910 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D RYU24_27200 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RYU24_19360 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D RYU24_14250 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RYU24_27660 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RYU24_04890 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RYU24_06280 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RYU24_00150 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RYU24_21610 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RYU24_12280 hypothetical protein K03666 hfq; host factor-I protein
D RYU24_29550 ppk_3; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RYU24_01180 ppk_1; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RYU24_22160 ppk_2; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RYU24_25280 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:avb03030]
D RYU24_21180 dnaQ; ribonuclease H K14159 rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7]
D RYU24_18370 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RYU24_12890 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RYU24_12410 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RYU24_25570 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RYU24_02550 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RYU24_00020 hypothetical protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RYU24_13040 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RYU24_08690 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RYU24_28640 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYU24_10990 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RYU24_06350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RYU24_24150 ligA_1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:avb03410]
D RYU24_21460 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RYU24_12500 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RYU24_00600 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RYU24_06950 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RYU24_00570 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RYU24_29180 crc; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RYU24_06350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RYU24_28950 recJ; ssDNA exonuclease, 5'--> 3' specific, Mg dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RYU24_24150 ligA_1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:avb03420]
D RYU24_17650 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RYU24_28690 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D RYU24_20330 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D RYU24_28270 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D RYU24_26580 pcrA; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RYU24_06350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RYU24_24150 ligA_1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:avb03430]
D RYU24_18430 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D RYU24_12260 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D RYU24_26580 pcrA; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RYU24_14020 xseA_1; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RYU24_14010 exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RYU24_10510 exoX; DNA exonuclease K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D RYU24_28950 recJ; ssDNA exonuclease, 5'--> 3' specific, Mg dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RYU24_28640 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYU24_18370 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RYU24_00020 hypothetical protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RYU24_12890 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RYU24_25570 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RYU24_12410 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RYU24_21180 dnaQ; ribonuclease H K14159 rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7]
D RYU24_02550 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RYU24_24150 ligA_1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RYU24_13590 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:avb03440]
D RYU24_28950 recJ; ssDNA exonuclease, 5'--> 3' specific, Mg dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RYU24_28640 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYU24_00030 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RYU24_10260 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RYU24_14410 recR; recombination protein RecR K06187 recR; recombination protein RecR
D RYU24_18040 recA; protein RecA K03553 recA; recombination protein RecA
D RYU24_06350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RYU24_09800 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RYU24_09790 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RYU24_12040 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RYU24_04350 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RYU24_27690 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D RYU24_27700 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D RYU24_27680 recD; RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D RYU24_18370 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RYU24_00020 hypothetical protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RYU24_12890 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RYU24_25570 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RYU24_12410 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RYU24_21180 dnaQ; ribonuclease H K14159 rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7]
D RYU24_02550 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RYU24_27580 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:avb03250]
D RYU24_00210 ppiA; peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:avb02010]
D RYU24_10110 cysP_1; ABC transporter permease K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D RYU24_10120 cysP_2; ABC transporter permease K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D RYU24_03290 sbp; ABC transporter permease K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D RYU24_10090 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D RYU24_10080 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D RYU24_10070 cysA; sulfate/thiosulfate import ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D RYU24_29830 ssuA2; sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RYU24_29840 sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RYU24_13230 sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RYU24_29860 ssuC_2; sulfonate ABC transporter K15554 ssuC; sulfonate transport system permease protein
D RYU24_13220 ssuC_1; ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D RYU24_29870 ssuB; aliphatic sulfonate ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RYU24_23000 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D RYU24_22990 modB; molybdate ABC transporter permease K02018 modB; molybdate transport system permease protein
D RYU24_22980 hypothetical protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D RYU24_04290 ttg2D; toluene tolerance protein K07323 mlaC; phospholipid transport system substrate-binding protein
D RYU24_04280 ttg2C; mammalian cell entry protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RYU24_04270 ttg2B; ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RYU24_04300 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D RYU24_04260 ttg2A; ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RYU24_25900 hypothetical protein K07335 bmpA; basic membrane protein A and related proteins
D RYU24_16510 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D RYU24_16490 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D RYU24_16480 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D RYU24_16500 ABC transporter K23537 nupA; general nucleoside transport system ATP-binding protein
D RYU24_20150 sphX; phosphonate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D RYU24_20140 pstC; phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein
D RYU24_20130 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D RYU24_20120 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D RYU24_11450 methionine transporter K02073 metQ; D-methionine transport system substrate-binding protein
D RYU24_18340 yhcJ; hypothetical protein K02073 metQ; D-methionine transport system substrate-binding protein
D RYU24_11430 metI; metal ABC transporter permease K02072 metI; D-methionine transport system permease protein
D RYU24_18360 metN; methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein
D RYU24_11440 metN1; methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D RYU24_18350 metN2; methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D RYU24_16790 livK; urea ABC transporter substrate-binding protein K11959 urtA; urea transport system substrate-binding protein
D RYU24_16780 ABC transporter permease K11960 urtB; urea transport system permease protein
D RYU24_16770 branched-chain amino acid ABC transporter permease K11961 urtC; urea transport system permease protein
D RYU24_16760 ABC transporter ATP-binding protein K11962 urtD; urea transport system ATP-binding protein
D RYU24_16750 ABC transporter ATP-binding protein K11963 urtE; urea transport system ATP-binding protein
D RYU24_21160 ABC transporter substrate-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D RYU24_21150 yejB; microcin C ABC transporter permease YejB K13894 yejB; microcin C transport system permease protein
D RYU24_21140 yejE; ABC transporter permease K13895 yejE; microcin C transport system permease protein
D RYU24_01870 znuA; DNA repair protein HhH-GPD K09815 znuA; zinc transport system substrate-binding protein
D RYU24_01840 znuB; DNA repair protein HhH-GPD K09816 znuB; zinc transport system permease protein
D RYU24_01850 znuC; zinc import ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D RYU24_09540 lolC; multidrug ABC transporter substrate-binding protein K09808 lolC_E; lipoprotein-releasing system permease protein
D RYU24_16120 hypothetical protein K09808 lolC_E; lipoprotein-releasing system permease protein
D RYU24_09550 lolD; lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RYU24_16130 macB_1; macrolide export ATP-binding/permease protein MacB K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RYU24_02570 LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D RYU24_02580 LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D RYU24_18570 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RYU24_12380 msbA; lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RYU24_15090 multidrug ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D RYU24_18520 paxB; ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RYU24_25600 macB_2; macrolide export ATP-binding/permease protein MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:avb02060]
D RYU24_01340 phosphoenolpyruvate--protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
D RYU24_01360 fruA; PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RYU24_01350 phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D RYU24_26920 ptsP; phosphoenolpyruvate--protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D RYU24_25230 ptsO; phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr
C 03070 Bacterial secretion system [PATH:avb03070]
D RYU24_02800 RND transporter K12340 tolC; outer membrane protein
D RYU24_28120 xcpQ; type II secretion system protein GspD K02453 gspD; general secretion pathway protein D
D RYU24_28130 general secretion pathway protein K02452 gspC; general secretion pathway protein C
D RYU24_27570 xcpS; type II secretion system protein GspF K02455 gspF; general secretion pathway protein F
D RYU24_27560 xcpT; type II secretion system protein GspG K02456 gspG; general secretion pathway protein G
D RYU24_12450 general secretion pathway protein GspG K02456 gspG; general secretion pathway protein G
D RYU24_12460 xcpV; type II secretion system protein GspI K02458 gspI; general secretion pathway protein I
D RYU24_12470 xcpW; type II secretion system protein GspJ K02459 gspJ; general secretion pathway protein J
D RYU24_12480 xcpX; type II secretion system protein K K02460 gspK; general secretion pathway protein K
D RYU24_19310 type II secretion system protein L K02461 gspL; general secretion pathway protein L
D RYU24_06390 xcpR_1; type II secretion system protein GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D RYU24_10720 xcpR_2; type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D RYU24_05990 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RYU24_05980 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D RYU24_28070 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RYU24_03000 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RYU24_04710 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RYU24_06000 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RYU24_30220 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RYU24_24740 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RYU24_14550 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D RYU24_25690 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RYU24_24240 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RYU24_27510 type VI secretion system protein K11904 vgrG; type VI secretion system secreted protein VgrG
D RYU24_01780 type VI secretion system protein K11904 vgrG; type VI secretion system secreted protein VgrG
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:avb02020]
D RYU24_01680 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D RYU24_01690 phoB; DNA-binding response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D RYU24_20980 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RYU24_20990 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RYU24_01170 phoD; alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D RYU24_20150 sphX; phosphonate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D RYU24_27830 envZ; two-component sensor histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RYU24_27820 ompR; DNA-binding response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D RYU24_07330 rstB; two-component sensor histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D RYU24_07320 rstA; DNA-binding response regulator K07661 rstA; two-component system, OmpR family, response regulator RstA
D RYU24_10180 degP; serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D RYU24_24980 baeS; two-component sensor histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D RYU24_24970 baeR; DNA-binding response regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR
D RYU24_02180 farB; MFS transporter K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D RYU24_11200 hypothetical protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D RYU24_11190 irlR; DNA-binding response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D RYU24_00010 dnaA_1; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RYU24_20890 sfcA; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D RYU24_28220 algZ; alginate biosynthesis protein K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D RYU24_28210 algR; DNA-binding response regulator K08083 algR; two-component system, LytTR family, response regulator AlgR
D RYU24_05920 barA; hybrid sensor histidine kinase/response regulator K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D RYU24_02630 gacA; DNA-binding response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D RYU24_11000 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D RYU24_01260 hypothetical protein K07346 fimC; fimbrial chaperone protein
D RYU24_01250 outer membrane usher protein K07347 fimD; outer membrane usher protein
D RYU24_11340 glnD; bifunctional uridylyltransferase/uridylyl-removing enzyme K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D RYU24_18200 glnL; PAS domain-containing sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D RYU24_18210 glnG; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D RYU24_20660 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYU24_19610 atoE; short-chain fatty acid transporter scFAT family K02106 atoE; short-chain fatty acids transporter
D RYU24_06790 fadA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_06850 thlA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_12840 fadI; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_15230 thlA_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_10830 dctA; C4-dicarboxylate ABC transporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D RYU24_02620 pilS; histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D RYU24_02610 pilR; sigma-54-dependent Fis family transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR
D RYU24_24700 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D RYU24_03570 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D RYU24_03590 pilE_1; pilin K02650 pilA; type IV pilus assembly protein PilA
D RYU24_18760 pilE_3; pilin K02650 pilA; type IV pilus assembly protein PilA
D RYU24_07870 pilJ; methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D RYU24_07860 pilI; twitching motility protein PilT K02659 pilI; twitching motility protein PilI
D RYU24_07840 pilG; response regulator K02657 pilG; twitching motility two-component system response regulator PilG
D RYU24_07850 pilH; response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D RYU24_19700 crp; transcriptional regulator Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RYU24_22390 glsA; glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D RYU24_14320 cydA; cytochrome bd oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RYU24_14870 cioA; cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RYU24_14310 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RYU24_14880 cioB; ubiquinol oxidase subunit II, cyanide insensitive K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RYU24_02800 RND transporter K12340 tolC; outer membrane protein
D RYU24_00670 wza; membrane protein K01991 wza; polysaccharide biosynthesis/export protein
D RYU24_00660 ptp; protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D RYU24_12920 ptpA; phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D RYU24_00650 ptk; tyrosine protein kinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:avb02024]
D RYU24_12280 hypothetical protein K03666 hfq; host factor-I protein
D RYU24_28090 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RYU24_20680 trpG; glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D RYU24_14760 aroF_1; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RYU24_15030 aroF_2; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RYU24_02260 fadD_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RYU24_16000 fadD_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RYU24_19700 crp; transcriptional regulator Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RYU24_01860 zur; Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D RYU24_04220 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RYU24_02500 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RYU24_04130 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D RYU24_16340 membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D RYU24_16350 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D RYU24_08290 oprM; adeC/adeK/oprM family multidrug efflux complex outer membrane factor K18139 oprM; outer membrane protein, multidrug efflux system
D RYU24_24050 oppA; heme-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RYU24_24030 gsiC; ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RYU24_24020 appC; ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RYU24_24010 gsiA; ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RYU24_30220 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RYU24_28070 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RYU24_03000 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RYU24_04710 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RYU24_06000 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RYU24_24740 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RYU24_14550 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D RYU24_25690 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RYU24_24240 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly [PATH:avb02040]
D RYU24_08490 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D RYU24_24700 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D RYU24_14250 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:avb04980]
D RYU24_24880 ATP--cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D RYU24_22310 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:avb01501]
D RYU24_19880 ampG4_1; MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RYU24_26140 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RYU24_08310 acrA; AdeA/AdeI family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RYU24_08300 acrB2; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RYU24_09010 mexB_1; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RYU24_09020 mexB_2; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RYU24_08290 oprM; adeC/adeK/oprM family multidrug efflux complex outer membrane factor K18139 oprM; outer membrane protein, multidrug efflux system
D RYU24_02800 RND transporter K12340 tolC; outer membrane protein
D RYU24_03370 ponA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RYU24_21510 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RYU24_03320 ftsI; peptide ABC transporter permease K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:avb01502]
D RYU24_29100 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RYU24_13030 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RYU24_23850 dadX; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RYU24_03340 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RYU24_03350 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RYU24_29120 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:avb01503]
D RYU24_05800 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RYU24_13980 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RYU24_10180 degP; serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D RYU24_29740 dsbA; thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D RYU24_00210 ppiA; peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RYU24_08310 acrA; AdeA/AdeI family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RYU24_08300 acrB2; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RYU24_09010 mexB_1; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RYU24_09020 mexB_2; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RYU24_02800 RND transporter K12340 tolC; outer membrane protein
D RYU24_18080 lpxA2; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam ine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:avb01000]
C 01001 Protein kinases [BR:avb01001]
D RYU24_01390 phosphatidylinositol kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D RYU24_00650 ptk; tyrosine protein kinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D RYU24_01680 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D RYU24_27830 envZ; two-component sensor histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RYU24_07330 rstB; two-component sensor histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D RYU24_24980 baeS; two-component sensor histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D RYU24_11200 hypothetical protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D RYU24_10750 qseC; two-component sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RYU24_05920 barA; hybrid sensor histidine kinase/response regulator K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D RYU24_28220 algZ; alginate biosynthesis protein K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D RYU24_18200 glnL; PAS domain-containing sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D RYU24_02620 pilS; histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:avb01009]
D RYU24_09210 sahH; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RYU24_27920 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D RYU24_25790 protein-serine/threonine phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D RYU24_29530 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:avb01002]
D RYU24_29920 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RYU24_02960 pilD; type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RYU24_01610 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RYU24_18710 yfeJ_2; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RYU24_19270 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RYU24_03460 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RYU24_01050 glmS; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RYU24_00270 glutamine amidotransferase K05520 yhbO; deglycase [EC:3.5.1.124]
D RYU24_10860 hypothetical protein K05520 yhbO; deglycase [EC:3.5.1.124]
D RYU24_12730 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RYU24_04870 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D RYU24_22800 pepO_1; peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D RYU24_22810 pepO_2; peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D RYU24_17430 preP2; peptidase M16 K06972 PITRM1; presequence protease [EC:3.4.24.-]
D RYU24_14530 peptidase M16 K07263 pqqL; zinc protease [EC:3.4.24.-]
D RYU24_14540 peptidase M16 K07263 pqqL; zinc protease [EC:3.4.24.-]
D RYU24_19070 peptidase M16 K07263 pqqL; zinc protease [EC:3.4.24.-]
D RYU24_02560 pepA; putative cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RYU24_07900 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RYU24_00590 lytH_1; peptidase M23 K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D RYU24_11260 lytH_2; peptidase M23 K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D RYU24_10340 map_1; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RYU24_14140 map_2; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RYU24_21340 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D RYU24_08900 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RYU24_09050 htpX; protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D RYU24_19230 putative beta-barrel assembly-enhancing protease K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D RYU24_18130 putative zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D RYU24_20840 hypothetical protein K21429 impA; immunomodulating metalloprotease
D RYU24_10180 degP; serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D RYU24_20570 algW; 2-alkenal reductase K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D RYU24_11140 dacD; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RYU24_19970 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RYU24_02640 pbpG; D-alanyl-D-alanine endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D RYU24_26240 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RYU24_21390 lon; Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D RYU24_01330 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D RYU24_17110 umuD; DNA polymerase V K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D RYU24_10210 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RYU24_26130 prc; tail-specific protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D RYU24_02600 ctpA; peptidase S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D RYU24_09580 nhaA; peptidase S49 K04773 sppA; protease IV [EC:3.4.21.-]
D RYU24_20100 sohB; protease SohB K04774 sohB; serine protease SohB [EC:3.4.21.-]
D RYU24_05610 hypothetical protein K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D RYU24_10610 U32 family peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:avb01003]
D RYU24_22170 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RYU24_10790 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D RYU24_03370 ponA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RYU24_22860 otsA; trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:avb01005]
D RYU24_18080 lpxA2; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam ine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RYU24_14780 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RYU24_29060 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RYU24_18100 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RYU24_17790 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RYU24_12390 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RYU24_25110 htrB_2; lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RYU24_26690 htrB_3; lipid A biosynthesis lauroyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RYU24_09570 htrB_1; lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RYU24_28300 aspH; aspartyl/asparaginyl beta-hydroxylase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D RYU24_28890 kdtA; 3-deoxy-D-manno-2-octulosonate transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RYU24_14240 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RYU24_12400 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RYU24_18600 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D RYU24_18610 kdsD; arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:avb01011]
D RYU24_24670 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RYU24_12930 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RYU24_29110 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RYU24_02720 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RYU24_03330 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RYU24_29100 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RYU24_13030 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RYU24_23850 dadX; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RYU24_27460 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RYU24_03350 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RYU24_29120 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RYU24_24520 uppP2; undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RYU24_25500 pgpB_2; phosphatidylglycerophosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RYU24_20240 undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RYU24_29680 mviN; putative lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D RYU24_03370 ponA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RYU24_10790 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D RYU24_21510 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RYU24_03320 ftsI; peptide ABC transporter permease K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RYU24_11140 dacD; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RYU24_19970 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RYU24_02640 pbpG; D-alanyl-D-alanine endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D RYU24_22170 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D RYU24_00590 lytH_1; peptidase M23 K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D RYU24_11260 lytH_2; peptidase M23 K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D RYU24_05070 slt_1; lytic transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RYU24_10400 mltB_1; murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D RYU24_10140 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D RYU24_10390 hypothetical protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RYU24_05800 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RYU24_13980 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RYU24_29690 ampD; N-acetyl-anhydromuranmyl-L-alanine amidase K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:avb01004]
D RYU24_23910 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RYU24_23810 fabB; 3-oxoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D RYU24_12850 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYU24_21550 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYU24_23900 fabG; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RYU24_18090 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RYU24_25710 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RYU24_22210 tesA; arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D RYU24_04390 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D RYU24_05230 acyl-CoA thioesterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D RYU24_24910 olE1; fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D RYU24_15480 des6_1; linoleoyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
D RYU24_18880 des6_2; linoleoyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
D RYU24_28850 acsA2; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYU24_13280 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RYU24_27210 long-chain-acyl-CoA synthetase K13776 atuH; citronellyl-CoA synthetase [EC:6.2.1.-]
D RYU24_02260 fadD_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RYU24_16000 fadD_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RYU24_19520 acsF2; acyl-CoA synthetase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D RYU24_04380 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:avb01006]
D RYU24_22580 ispA; (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D RYU24_08340 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RYU24_18160 ispU; ditrans,polycis-undecaprenyl-diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RYU24_12270 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RYU24_20630 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D RYU24_13080 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:avb01007]
D RYU24_03250 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RYU24_17770 glnS2; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D RYU24_02740 gluQ; glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D RYU24_30000 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RYU24_22040 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RYU24_18620 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RYU24_29430 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RYU24_07680 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RYU24_29910 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RYU24_22420 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RYU24_25550 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RYU24_22080 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RYU24_25090 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RYU24_25430 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RYU24_27280 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RYU24_27290 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RYU24_08390 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RYU24_07800 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RYU24_06110 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RYU24_11020 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RYU24_06240 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RYU24_06250 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RYU24_10330 aspC; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RYU24_11300 aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RYU24_23160 tyrB; aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D RYU24_01770 ybdL; aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D RYU24_11330 dapL; succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D RYU24_24640 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYU24_10890 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RYU24_19910 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RYU24_11810 astC; acetylornithine aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D RYU24_11680 gabT; 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D RYU24_20220 dat; aspartate aminotransferase family protein K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D RYU24_18980 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RYU24_25190 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RYU24_09490 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:avb00194]
D RYU24_01960 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RYU24_01950 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RYU24_01940 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RYU24_01930 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RYU24_01920 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RYU24_01910 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RYU24_01900 atpE; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RYU24_01890 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RYU24_01880 atpI; F0F1 ATP synthase subunit I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:avb03000]
D RYU24_13520 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RYU24_14790 araC; AraC family transcriptional regulator K21747 alkR; AraC family transcriptional regulator, alkane utilization regulator
D RYU24_22140 estR; LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D RYU24_09960 iciA; transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D RYU24_27100 hcaR; RpiR family transcriptional regulator K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator
D RYU24_09880 hypothetical protein K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator
D RYU24_10060 gltC_2; cys regulon transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D RYU24_15410 benM; LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D RYU24_11670 mocR; decarboxylase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D RYU24_15740 betI; HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D RYU24_29880 rutR; TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D RYU24_00420 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D RYU24_18900 TetR family transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D RYU24_17700 lrp_2; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RYU24_23870 lrp_4; AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RYU24_11520 lrp_1; transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RYU24_09370 AsnC family transcriptional regulator K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
D RYU24_14860 ywoH; putative HTH-type transcriptional regulator YwoH K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D RYU24_15190 zntR; transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D RYU24_23530 fur; transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RYU24_01860 zur; Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D RYU24_19700 crp; transcriptional regulator Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RYU24_17560 transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D RYU24_04450 hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D RYU24_24200 birA; biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RYU24_18290 fis; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RYU24_17140 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D RYU24_01540 hypothetical protein K07727 K07727; putative transcriptional regulator
D RYU24_14840 transcriptional regulator K07729 K07729; putative transcriptional regulator
D RYU24_15590 copG; transcriptional regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D RYU24_17710 putA; bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RYU24_01550 bolA; BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D RYU24_12350 spoOJ; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RYU24_28680 thiED_2; aminopyrimidine aminohydrolase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RYU24_18670 PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D RYU24_24300 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D RYU24_10540 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D RYU24_02850 UPF0301 protein K07735 algH; putative transcriptional regulator
D RYU24_02750 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D RYU24_02490 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
C 03021 Transcription machinery [BR:avb03021]
D RYU24_04750 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RYU24_28000 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RYU24_27990 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RYU24_03680 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RYU24_08490 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D RYU24_09680 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RYU24_19390 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D RYU24_24700 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D RYU24_18930 hepA; RNA polymerase-associated protein RapA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D RYU24_03020 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D RYU24_01090 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D RYU24_28060 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RYU24_06510 sspA; starvation protein A K03599 sspA; stringent starvation protein A
D RYU24_06500 sspB; stringent starvation protein B K03600 sspB; stringent starvation protein B
D RYU24_02750 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D RYU24_08820 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D RYU24_09100 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D RYU24_06280 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:avb03019]
D RYU24_27200 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RYU24_22670 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D RYU24_10230 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RYU24_04890 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RYU24_25650 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RYU24_19360 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D RYU24_14250 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RYU24_27660 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RYU24_06280 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RYU24_00150 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RYU24_21610 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RYU24_12280 hypothetical protein K03666 hfq; host factor-I protein
D RYU24_29550 ppk_3; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RYU24_01180 ppk_1; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RYU24_22160 ppk_2; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RYU24_25280 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D RYU24_26910 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D RYU24_11000 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D RYU24_17970 menG; 4-hydroxy-4-methyl-2-oxoglutarate aldolase K02553 rraA; regulator of ribonuclease activity A
D RYU24_25240 nucleotide-binding protein K06958 rapZ; RNase adapter protein RapZ
D RYU24_12150 hrpA; ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:avb03011]
D RYU24_12550 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RYU24_10350 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RYU24_04570 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RYU24_04740 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RYU24_04680 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RYU24_13070 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RYU24_23780 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RYU24_04650 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RYU24_06530 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RYU24_04500 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RYU24_04730 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RYU24_23790 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RYU24_04720 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RYU24_04640 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RYU24_27670 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RYU24_03780 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RYU24_04600 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RYU24_13060 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RYU24_04550 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RYU24_17990 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RYU24_19200 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D RYU24_28040 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RYU24_04540 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RYU24_04510 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RYU24_04520 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RYU24_04630 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RYU24_04660 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RYU24_13050 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RYU24_28030 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RYU24_28050 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RYU24_28020 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RYU24_06540 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RYU24_04610 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RYU24_04700 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RYU24_04580 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RYU24_04760 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RYU24_04670 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RYU24_03810 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RYU24_06220 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RYU24_08350 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RYU24_04560 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RYU24_04530 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RYU24_04620 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RYU24_08360 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RYU24_26520 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RYU24_04590 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RYU24_04690 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RYU24_04090 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31
D RYU24_19850 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RYU24_23920 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RYU24_26530 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RYU24_30250 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RYU24_06210 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RYU24_08630 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D RYU24_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00160 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00190 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00120 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00090 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00150 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00010 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00100 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00180 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00070 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00130 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00210 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00110 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00140 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00200 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00170 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00080 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:avb03009]
D RYU24_10230 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RYU24_25650 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RYU24_10240 era; GTPase Era K03595 era; GTPase
D RYU24_20260 yhbZ; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
D RYU24_02750 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D RYU24_03020 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D RYU24_01090 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D RYU24_28060 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RYU24_12210 rsuA; pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D RYU24_06570 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RYU24_00320 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D RYU24_06900 rsmC; ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D RYU24_21520 rsmD; ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RYU24_09190 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RYU24_12330 gidB; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RYU24_03300 mraW; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RYU24_21250 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RYU24_24510 rsmJ; ribosomal RNA small subunit methyltransferase J K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D RYU24_03360 rrmA; hypothetical protein K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D RYU24_02930 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RYU24_08890 rlmE; ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D RYU24_24140 rlmF; ribosomal RNA large subunit methyltransferase F K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D RYU24_21410 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D RYU24_05150 rlmJ; ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D RYU24_19660 ycbY; ribosomal RNA large subunit methyltransferase K/L K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D RYU24_25470 rlmN; dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D RYU24_05950 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D RYU24_07100 rluA_1; RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RYU24_12240 pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RYU24_18940 rluA_2; RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RYU24_24000 rluB; pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RYU24_27190 hypothetical protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D RYU24_08710 rluD; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RYU24_11220 rluE; pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D RYU24_23740 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D RYU24_03790 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D RYU24_18190 yliG; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D RYU24_15780 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D RYU24_18270 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D RYU24_14660 prmB; 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D RYU24_17930 xseA_2; exodeoxyribonuclease VII large subunit K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D RYU24_27200 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RYU24_22670 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D RYU24_02840 putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D RYU24_25660 engC; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RYU24_25400 engA; GTPase Der K03977 engA; GTPase
D RYU24_06660 hflX; GTPase HflX K03665 hflX; GTPase
D RYU24_02050 yrdC; threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RYU24_03670 spoT; RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RYU24_03040 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D RYU24_03010 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D RYU24_05880 rsfS; ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
D RYU24_05040 ybeY; endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
D RYU24_08880 RNA-binding protein K07574 yhbY; RNA-binding protein
D RYU24_25220 hypothetical protein K09889 yjgA; ribosome-associated protein
D RYU24_24690 rpoX; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D RYU24_11420 ychF; ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
D RYU24_23930 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:avb03016]
D RYU24_05080 hypothetical protein K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D RYU24_09160 cca; multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D RYU24_03250 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RYU24_07800 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RYU24_29910 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RYU24_25550 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RYU24_07680 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RYU24_17770 glnS2; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D RYU24_29430 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RYU24_22080 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RYU24_25090 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RYU24_11020 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RYU24_06110 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RYU24_08390 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RYU24_18620 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RYU24_22420 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RYU24_25430 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RYU24_06240 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RYU24_06250 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RYU24_30000 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RYU24_22040 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RYU24_29500 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D RYU24_14350 hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RYU24_19480 trmB_1; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D RYU24_10680 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D RYU24_26760 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RYU24_03850 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D RYU24_17570 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RYU24_02050 yrdC; threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RYU24_12270 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RYU24_30210 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D RYU24_18230 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RYU24_18010 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D RYU24_30240 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RYU24_21060 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D RYU24_29720 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D RYU24_14420 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RYU24_03160 yjjK; energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA
D RYU24_27280 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RYU24_27290 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RYU24_02740 gluQ; glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D RYU24_16950 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D RYU24_12520 yfhC; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D RYU24_05360 dusA; tRNA-dihydrouridine(20/20a) synthase K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D RYU24_18850 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D RYU24_24410 dusC; tRNA-dihydrouridine(16) synthase K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D RYU24_05060 miaB; tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RYU24_19510 cmoA; SAM-dependent methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D RYU24_17720 trmA; tRNA/tmRNA (uracil-C(5))-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D RYU24_03800 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RYU24_18380 trmJ; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D RYU24_08410 trmL; tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D RYU24_09690 rRNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D RYU24_07100 rluA_1; RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RYU24_12240 pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RYU24_18940 rluA_2; RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RYU24_20040 trmU; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RYU24_09070 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D RYU24_27520 sirA; hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D RYU24_19380 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D RYU24_16890 tusD; sulfurtransferase TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D RYU24_16920 tusE; sulfurtransferase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D RYU24_17590 iron-binding protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D RYU24_07000 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D RYU24_10280 miaE; tRNA hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D RYU24_05270 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D RYU24_06060 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D RYU24_10000 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D RYU24_12490 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RYU24_10010 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D RYU24_10420 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D RYU24_12010 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D RYU24_06010 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D RYU24_06320 mesJ; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RYU24_24530 yeaZ; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RYU24_19190 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RYU24_12250 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D RYU24_25630 tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D RYU24_04890 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RYU24_27660 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:avb03012]
D RYU24_03030 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RYU24_06120 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RYU24_00070 yheS; ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D RYU24_10360 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D RYU24_28080 tuf1_2; elongation factor Tu K02358 tuf; elongation factor Tu
D RYU24_23760 tuf1_1; elongation factor Tu K02358 tuf; elongation factor Tu
D RYU24_23770 fusA; elongation factor G K02355 fusA; elongation factor G
D RYU24_13200 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D RYU24_18170 frr; ribosome-recycling factor K02838 frr; ribosome recycling factor
D RYU24_13210 hemK; release factor glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RYU24_08620 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D RYU24_26780 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D RYU24_19810 efp; elongation factor P K02356 efp; elongation factor P
D RYU24_09140 poxA; elongation factor P--(R)-beta-lysine ligase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D RYU24_19820 EF-P beta-lysylation protein EpmB K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D RYU24_23940 hypothetical protein K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D RYU24_28920 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D RYU24_25750 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:avb03110]
D RYU24_17330 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D RYU24_19670 clpB; chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D RYU24_26230 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D RYU24_27920 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D RYU24_00150 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RYU24_17610 hscA; chaperone protein HscA K04044 hscA; molecular chaperone HscA
D RYU24_21610 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RYU24_00460 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RYU24_17600 hscB; co-chaperone protein HscB K04082 hscB; molecular chaperone HscB
D RYU24_27600 hslO; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33
D RYU24_00160 grpE; protein GrpE K03687 GRPE; molecular chaperone GrpE
D RYU24_06160 ibpA; heat-shock protein IbpA K04080 ibpA; molecular chaperone IbpA
D RYU24_18030 hslR; heat shock protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D RYU24_21620 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D RYU24_10180 degP; serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D RYU24_08900 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RYU24_01890 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RYU24_01260 hypothetical protein K07346 fimC; fimbrial chaperone protein
D RYU24_25690 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RYU24_00210 ppiA; peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RYU24_17780 ppiB; peptidyl-prolyl cis-trans isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D RYU24_17520 ppiD; peptidylprolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D RYU24_00640 fkpA; peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D RYU24_00630 fklB; peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D RYU24_29930 yaaD; peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D RYU24_11120 slyD; peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D RYU24_06940 ppiC; peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D RYU24_12290 surA; chaperone SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D RYU24_06290 trxA; thioredoxin K03671 TXN; thioredoxin
D RYU24_21750 hypothetical protein K03671 TXN; thioredoxin
D RYU24_05220 thi3; thiol disulfide reductase thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D RYU24_25680 grx; glutaredoxin 3 K03676 grxC; glutaredoxin 3
D RYU24_19900 grxD; glutaredoxin K07390 grxD; monothiol glutaredoxin
D RYU24_29740 dsbA; thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D RYU24_29370 dsbB; disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D RYU24_30170 dsbC_2; thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D RYU24_02670 dsbC_1; thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D RYU24_29250 dsbD; thiol:disulfide interchange protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
C 04131 Membrane trafficking [BR:avb04131]
D RYU24_25480 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RYU24_29010 UPF0016 family membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D RYU24_11030 epD; D-erythrose 4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RYU24_20300 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RYU24_27920 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:avb03051]
D RYU24_27920 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:avb03032]
D RYU24_13520 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RYU24_17530 hup; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D RYU24_06260 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D RYU24_12560 himD; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D RYU24_00010 dnaA_1; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RYU24_13040 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RYU24_01490 dnaC; DNA replication protein K02315 dnaC; DNA replication protein DnaC
D RYU24_13580 hypothetical protein K02315 dnaC; DNA replication protein DnaC
D RYU24_08690 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RYU24_28640 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYU24_18370 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RYU24_00020 hypothetical protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RYU24_02550 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RYU24_25570 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RYU24_12410 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RYU24_21180 dnaQ; ribonuclease H K14159 rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7]
D RYU24_12890 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RYU24_10990 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RYU24_06350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RYU24_24150 ligA_1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RYU24_13590 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RYU24_09630 dnaA_2; DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D RYU24_09420 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RYU24_00040 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RYU24_02250 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RYU24_29340 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RYU24_26630 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:avb03036]
D RYU24_13520 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RYU24_10230 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RYU24_28150 hvrA; DNA-binding protein K03746 hns; DNA-binding protein H-NS
D RYU24_17530 hup; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D RYU24_06260 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D RYU24_12560 himD; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D RYU24_27640 MerR family transcriptional regulator K18997 cbpM; chaperone modulatory protein CbpM
D RYU24_00010 dnaA_1; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RYU24_22940 dps; DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D RYU24_18290 fis; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RYU24_12280 hypothetical protein K03666 hfq; host factor-I protein
D RYU24_09960 iciA; transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D RYU24_17700 lrp_2; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RYU24_23870 lrp_4; AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RYU24_11520 lrp_1; transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RYU24_24170 smc; chromosome partition protein Smc K03529 smc; chromosome segregation protein
D RYU24_23980 serine protease K05896 scpA; segregation and condensation protein A
D RYU24_23990 segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D RYU24_29080 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D RYU24_14260 ftsB; cell division protein FtsB K05589 ftsB; cell division protein FtsB
D RYU24_03320 ftsI; peptide ABC transporter permease K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RYU24_23700 ftsK; DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RYU24_03310 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D RYU24_29090 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D RYU24_02730 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D RYU24_29070 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RYU24_24160 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA
D RYU24_12640 yhcM; cell division protein ZapE K06916 zapE; cell division protein ZapE
D RYU24_05800 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RYU24_13980 hypothetical protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RYU24_08310 acrA; AdeA/AdeI family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RYU24_23660 minC; putative septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D RYU24_23670 minD; site-determining protein K03609 minD; septum site-determining protein MinD
D RYU24_23680 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor
D RYU24_07250 hypothetical protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RYU24_22710 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RYU24_22700 mreC; cell shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D RYU24_22690 hypothetical protein K03571 mreD; rod shape-determining protein MreD
D RYU24_14280 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D RYU24_01570 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D RYU24_04020 parA; chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D RYU24_12340 soj; cobyric acid synthase CobQ K03496 parA; chromosome partitioning protein
D RYU24_12350 spoOJ; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RYU24_02250 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RYU24_29340 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RYU24_18230 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RYU24_12330 gidB; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RYU24_09350 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D RYU24_02680 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D RYU24_07700 mrp; iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RYU24_25800 cell filamentation protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D RYU24_04440 engB; putative GTP-binding protein EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:avb03400]
D RYU24_24430 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RYU24_28830 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RYU24_12500 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RYU24_00600 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RYU24_21460 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RYU24_04330 mutT; DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RYU24_10770 bifunctional protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RYU24_23610 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RYU24_00570 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RYU24_06950 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RYU24_29180 crc; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RYU24_28950 recJ; ssDNA exonuclease, 5'--> 3' specific, Mg dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RYU24_24150 ligA_1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RYU24_06350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RYU24_28690 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D RYU24_20330 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D RYU24_28270 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D RYU24_26580 pcrA; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RYU24_28000 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RYU24_27990 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RYU24_04750 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RYU24_03680 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RYU24_17650 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RYU24_18430 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D RYU24_12260 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D RYU24_14020 xseA_1; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RYU24_14010 exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RYU24_10510 exoX; DNA exonuclease K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D RYU24_18370 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RYU24_00020 hypothetical protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RYU24_02550 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RYU24_25570 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RYU24_12410 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RYU24_21180 dnaQ; ribonuclease H K14159 rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7]
D RYU24_12890 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RYU24_28640 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYU24_13590 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RYU24_27690 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D RYU24_27700 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D RYU24_27680 recD; RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D RYU24_18040 recA; protein RecA K03553 recA; recombination protein RecA
D RYU24_09800 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RYU24_09790 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RYU24_12040 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RYU24_27580 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RYU24_23480 sbcC; nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
D RYU24_23470 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D RYU24_09270 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D RYU24_00030 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RYU24_04350 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RYU24_10260 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RYU24_14410 recR; recombination protein RecR K06187 recR; recombination protein RecR
D RYU24_02910 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D RYU24_04470 yjgR; ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D RYU24_09420 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RYU24_00040 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RYU24_26630 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RYU24_17530 hup; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D RYU24_18290 fis; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RYU24_06260 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D RYU24_12560 himD; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D RYU24_28150 hvrA; DNA-binding protein K03746 hns; DNA-binding protein H-NS
D RYU24_02160 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RYU24_01320 impB_1; DNA methylase K03502 umuC; DNA polymerase V
D RYU24_17120 impB_2; DNA methylase K03502 umuC; DNA polymerase V
D RYU24_01330 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D RYU24_17110 umuD; DNA polymerase V K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D RYU24_18050 hypothetical protein K03565 recX; regulatory protein
D RYU24_23620 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D RYU24_07310 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RYU24_07280 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:avb03029]
D RYU24_03030 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RYU24_06120 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RYU24_10360 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D RYU24_28080 tuf1_2; elongation factor Tu K02358 tuf; elongation factor Tu
D RYU24_23760 tuf1_1; elongation factor Tu K02358 tuf; elongation factor Tu
D RYU24_23770 fusA; elongation factor G K02355 fusA; elongation factor G
D RYU24_10240 era; GTPase Era K03595 era; GTPase
D RYU24_30000 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RYU24_25550 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RYU24_25090 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RYU24_29430 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RYU24_22730 gatA; glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RYU24_22740 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RYU24_22720 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RYU24_28520 endonuclease K01173 ENDOG; endonuclease G, mitochondrial
D RYU24_28640 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RYU24_18120 yaeT; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D RYU24_00150 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RYU24_00160 grpE; protein GrpE K03687 GRPE; molecular chaperone GrpE
D RYU24_21610 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RYU24_21620 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D RYU24_00460 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RYU24_17570 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RYU24_17600 hscB; co-chaperone protein HscB K04082 hscB; molecular chaperone HscB
D RYU24_19900 grxD; glutaredoxin K07390 grxD; monothiol glutaredoxin
D RYU24_07700 mrp; iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RYU24_13080 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RYU24_30220 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RYU24_27920 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:avb02000]
D RYU24_12380 msbA; lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RYU24_15090 multidrug ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D RYU24_18520 paxB; ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RYU24_25600 macB_2; macrolide export ATP-binding/permease protein MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D RYU24_26680 uup; ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D RYU24_10110 cysP_1; ABC transporter permease K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D RYU24_10120 cysP_2; ABC transporter permease K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D RYU24_03290 sbp; ABC transporter permease K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D RYU24_10090 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D RYU24_10080 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D RYU24_10070 cysA; sulfate/thiosulfate import ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D RYU24_23000 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D RYU24_22990 modB; molybdate ABC transporter permease K02018 modB; molybdate transport system permease protein
D RYU24_22980 hypothetical protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D RYU24_29830 ssuA2; sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RYU24_29840 sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RYU24_13230 sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RYU24_29860 ssuC_2; sulfonate ABC transporter K15554 ssuC; sulfonate transport system permease protein
D RYU24_13220 ssuC_1; ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D RYU24_29870 ssuB; aliphatic sulfonate ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RYU24_15610 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D RYU24_15660 hypothetical protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RYU24_15650 ABC transporter K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RYU24_25900 hypothetical protein K07335 bmpA; basic membrane protein A and related proteins
D RYU24_16510 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D RYU24_16490 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D RYU24_16480 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D RYU24_16500 ABC transporter K23537 nupA; general nucleoside transport system ATP-binding protein
D RYU24_04280 ttg2C; mammalian cell entry protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RYU24_04270 ttg2B; ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RYU24_04260 ttg2A; ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RYU24_04290 ttg2D; toluene tolerance protein K07323 mlaC; phospholipid transport system substrate-binding protein
D RYU24_04300 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D RYU24_20150 sphX; phosphonate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D RYU24_20140 pstC; phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein
D RYU24_20130 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D RYU24_20120 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D RYU24_11450 methionine transporter K02073 metQ; D-methionine transport system substrate-binding protein
D RYU24_18340 yhcJ; hypothetical protein K02073 metQ; D-methionine transport system substrate-binding protein
D RYU24_11430 metI; metal ABC transporter permease K02072 metI; D-methionine transport system permease protein
D RYU24_18360 metN; methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein
D RYU24_11440 metN1; methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D RYU24_18350 metN2; methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D RYU24_16790 livK; urea ABC transporter substrate-binding protein K11959 urtA; urea transport system substrate-binding protein
D RYU24_16780 ABC transporter permease K11960 urtB; urea transport system permease protein
D RYU24_16770 branched-chain amino acid ABC transporter permease K11961 urtC; urea transport system permease protein
D RYU24_16760 ABC transporter ATP-binding protein K11962 urtD; urea transport system ATP-binding protein
D RYU24_16750 ABC transporter ATP-binding protein K11963 urtE; urea transport system ATP-binding protein
D RYU24_24050 oppA; heme-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RYU24_24030 gsiC; ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RYU24_24020 appC; ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RYU24_24010 gsiA; ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RYU24_21160 ABC transporter substrate-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D RYU24_21150 yejB; microcin C ABC transporter permease YejB K13894 yejB; microcin C transport system permease protein
D RYU24_21140 yejE; ABC transporter permease K13895 yejE; microcin C transport system permease protein
D RYU24_22280 iron ABC transporter substrate-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D RYU24_01870 znuA; DNA repair protein HhH-GPD K09815 znuA; zinc transport system substrate-binding protein
D RYU24_01840 znuB; DNA repair protein HhH-GPD K09816 znuB; zinc transport system permease protein
D RYU24_01850 znuC; zinc import ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D RYU24_02570 LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D RYU24_02580 LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D RYU24_18570 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RYU24_09540 lolC; multidrug ABC transporter substrate-binding protein K09808 lolC_E; lipoprotein-releasing system permease protein
D RYU24_16120 hypothetical protein K09808 lolC_E; lipoprotein-releasing system permease protein
D RYU24_09550 lolD; lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RYU24_16130 macB_1; macrolide export ATP-binding/permease protein MacB K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RYU24_09440 ybhR; multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RYU24_09450 multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RYU24_10430 yadH; transport permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D RYU24_10440 yadG; ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RYU24_22190 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D RYU24_22200 ybbA; ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RYU24_19860 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D RYU24_27250 transporter divalent anion:Na+ symporter family protein K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D RYU24_04120 norM_1; MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump
D RYU24_10320 norM_2; multidrug resistance protein, MATE family K26939 norM; MATE family, multidrug efflux pump
D RYU24_01760 ypnP; multidrug resistance protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D RYU24_21660 kgtP; MFS transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D RYU24_08240 proP; MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D RYU24_02150 MFS transporter K08172 shiA; MFS transporter, MHS family, shikimate and dehydroshikimate transport protein
D RYU24_15820 dcaK_1; MFS transporter K08196 mucK; MFS transporter, AAHS family, cis,cis-muconate transporter
D RYU24_15880 dcaK_2; MFS transporter K08196 mucK; MFS transporter, AAHS family, cis,cis-muconate transporter
D RYU24_16020 mucK; MFS transporter K08196 mucK; MFS transporter, AAHS family, cis,cis-muconate transporter
D RYU24_00220 MFS transporter K05548 benK; MFS transporter, AAHS family, benzoate transport protein
D RYU24_00230 MFS transporter K05548 benK; MFS transporter, AAHS family, benzoate transport protein
D RYU24_15420 benK; MFS transporter K05548 benK; MFS transporter, AAHS family, benzoate transport protein
D RYU24_17020 hcaT; MFS transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D RYU24_23100 crnA; MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D RYU24_19880 ampG4_1; MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RYU24_08000 bcr; Bcr/CflA family drug resistance efflux transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RYU24_30120 sotB; putative sugar efflux transporter K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein
D RYU24_03970 cmr; MFS transporter K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D RYU24_00530 ydhP; MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D RYU24_23240 emrB; MFS transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D RYU24_02180 farB; MFS transporter K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D RYU24_02110 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D RYU24_02240 MFS transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D RYU24_26920 ptsP; phosphoenolpyruvate--protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D RYU24_25230 ptsO; phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr
D RYU24_01340 phosphoenolpyruvate--protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
D RYU24_01360 fruA; PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RYU24_02480 amtB; ammonium transporter K03320 amt; ammonium transporter, Amt family
D RYU24_07640 ammonium transporter K03320 amt; ammonium transporter, Amt family
D RYU24_01670 gst3; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RYU24_08100 erd13; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RYU24_11490 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RYU24_18700 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RYU24_19460 gstB; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RYU24_06510 sspA; starvation protein A K03599 sspA; stringent starvation protein A
D RYU24_16260 formate transporter K21993 fdhC; formate transporter
D RYU24_06930 mscL; large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D RYU24_28870 transporter K03442 mscS; small conductance mechanosensitive channel
D RYU24_15100 mechanosensitive ion channel protein MscS K16053 ybdG; miniconductance mechanosensitive channel
D RYU24_09030 magnesium transporter MgtE K06213 mgtE; magnesium transporter
D RYU24_26470 exbB; biopolymer transporter ExbB K03561 exbB; biopolymer transport protein ExbB
D RYU24_12360 biopolymer transporter ExbB K03561 exbB; biopolymer transport protein ExbB
D RYU24_24090 exbB1; biopolymer transporter ExbB K03561 exbB; biopolymer transport protein ExbB
D RYU24_26460 exbD_3; biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D RYU24_12370 exbD_1; biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D RYU24_24100 exbD1; biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D RYU24_24110 exbD_2; biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D RYU24_09760 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D RYU24_20920 tolQ-1; protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D RYU24_09750 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR
D RYU24_20910 tolR-1; protein TolR K03560 tolR; biopolymer transport protein TolR
D RYU24_04310 corA; magnesium transporter CorA K03284 corA; magnesium transporter
D RYU24_04080 crcB; putative fluoride ion transporter CrcB K06199 crcB; fluoride exporter
D RYU24_05320 hypothetical protein K08994 yneE; ion channel-forming bestrophin family protein
D RYU24_17760 bestrophin K08994 yneE; ion channel-forming bestrophin family protein
D RYU24_08980 ytfL; membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RYU24_06870 ompA; membrane protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RYU24_22620 long-chain fatty acid transporter K06076 fadL; long-chain fatty acid transport protein
D RYU24_01250 outer membrane usher protein K07347 fimD; outer membrane usher protein
D RYU24_26260 bfrD; ligand-gated channel protein K16090 fiu; catecholate siderophore receptor
D RYU24_24870 btuB_2; ligand-gated channel protein K16092 btuB; vitamin B12 transporter
D RYU24_16240 fpvA1; ligand-gated channel protein K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D RYU24_22250 outer membrane receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D RYU24_25070 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RYU24_02100 oprC; TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RYU24_03220 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RYU24_15710 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RYU24_16430 yncD; TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RYU24_24070 btuB_1; TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D RYU24_02800 RND transporter K12340 tolC; outer membrane protein
D RYU24_08290 oprM; adeC/adeK/oprM family multidrug efflux complex outer membrane factor K18139 oprM; outer membrane protein, multidrug efflux system
D RYU24_00670 wza; membrane protein K01991 wza; polysaccharide biosynthesis/export protein
D RYU24_06960 oprB_1; porin B K07267 oprB; porin
D RYU24_16450 oprB_2; porin K07267 oprB; porin
D RYU24_27120 porin K21758 benP; benzoate transport porin
D RYU24_18120 yaeT; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D RYU24_25410 ire-1; outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB
D RYU24_08700 comL; outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD
D RYU24_23540 bamE; outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE
D RYU24_13380 ytfM; outer membrane protein assembly factor K07278 tamA; translocation and assembly module TamA
D RYU24_13390 DUF490 domain-containing protein K09800 tamB; translocation and assembly module TamB
D RYU24_11920 hypothetical protein K21449 ata; trimeric autotransporter adhesin
D RYU24_18580 lptA; lipopolysaccharide export system protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D RYU24_18590 LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC
D RYU24_12300 lptD; LPS-assembly protein LptD K04744 lptD; LPS-assembly protein
D RYU24_25560 rlpB; LPS-assembly lipoprotein LptE K03643 lptE; LPS-assembly lipoprotein
D RYU24_27530 corC; magnesium transporter K06189 corC; hemolysin (HlyC) family protein
D RYU24_06890 lysP; lysine-specific permease K11733 lysP; lysine-specific permease
D RYU24_20160 aroP_1; aromatic amino acid transporter AroP K11734 aroP; aromatic amino acid transport protein AroP
D RYU24_23150 aroP_3; aromatic amino acid transporter AroP K11734 aroP; aromatic amino acid transport protein AroP
D RYU24_22600 aroP_2; amino acid permease K11734 aroP; aromatic amino acid transport protein AroP
D RYU24_24950 aroP_4; amino acid permease K11734 aroP; aromatic amino acid transport protein AroP
D RYU24_11660 gabP; GABA permease K11735 gabP; GABA permease
D RYU24_09300 cycA_1; alanine glycine permease K11737 cycA; D-serine/D-alanine/glycine transporter
D RYU24_11860 cycA_2; alanine glycine permease K11737 cycA; D-serine/D-alanine/glycine transporter
D RYU24_23830 cycA_3; alanine glycine permease K11737 cycA; D-serine/D-alanine/glycine transporter
D RYU24_21070 mmuP_1; amino acid permease K16235 mmuP; S-methylmethionine transporter
D RYU24_21080 mmuP_2; amino acid permease K16235 mmuP; S-methylmethionine transporter
D RYU24_18690 czcD_1; cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D RYU24_00310 zupT; zinc transporter ZupT K07238 TC.ZIP; zinc transporter, ZIP family
D RYU24_00440 nolG_1; acriflavin resistance protein K18303 mexK; multidrug efflux pump
D RYU24_08300 acrB2; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RYU24_09010 mexB_1; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RYU24_09020 mexB_2; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RYU24_12780 QacE family quaternary ammonium compound efflux SMR transporter K03297 emrE; small multidrug resistance pump
D RYU24_15620 qacF; multidrug SMR transporter K03297 emrE; small multidrug resistance pump
D RYU24_24440 sugE; QacE family quaternary ammonium compound efflux SMR transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE
D RYU24_03880 transporter K11939 rhtA; inner membrane transporter RhtA
D RYU24_03910 transporter K11939 rhtA; inner membrane transporter RhtA
D RYU24_20310 rarD; permease K05786 rarD; chloramphenicol-sensitive protein RarD
D RYU24_04130 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D RYU24_16340 membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D RYU24_16350 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D RYU24_17320 UPF0060 membrane protein K09771 TC.SMR3; small multidrug resistance family-3 protein
D RYU24_27950 sodium:proton antiporter K07084 yuiF; putative amino acid transporter
D RYU24_20420 kdgT; 2-keto-3-deoxygluconate permease K02526 kdgT; 2-keto-3-deoxygluconate permease
D RYU24_28730 betT_2; beta-aspartyl-peptidase K02168 betT; choline/glycine/proline betaine transport protein
D RYU24_15730 betT_1; high-affinity choline transporter BetT K02168 betT; choline/glycine/proline betaine transport protein
D RYU24_22570 putP; sodium:proline symporter K11928 putP; sodium/proline symporter
D RYU24_28750 cation acetate symporter K14393 actP; cation/acetate symporter
D RYU24_10830 dctA; C4-dicarboxylate ABC transporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D RYU24_15140 sstT; serine/threonine transporter SstT K07862 sstT; serine/threonine transporter
D RYU24_08020 gltS_1; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D RYU24_14090 gltS_2; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D RYU24_22000 nhx7; sodium:proton antiporter K03316 nhaP; Na+:H+ antiporter
D RYU24_27590 kefB; potassium transporter K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D RYU24_26540 ybaL; sodium:proton antiporter K26735 KEA4_5_6; K+:H+ antiporter
D RYU24_17410 ntpJ; potassium transporter TrkH K03498 trkH; trk/ktr system potassium uptake protein
D RYU24_17400 trkA; potassium transporter TrkA K03499 trkA; trk/ktr system potassium uptake protein
D RYU24_00400 ycdG; pyrimidine permease K09016 rutG; putative pyrimidine permease RutG
D RYU24_20500 rutG; pyrimidine utilization transport protein G K09016 rutG; putative pyrimidine permease RutG
D RYU24_25850 permease K24206 uacT; uric acid transporter
D RYU24_16610 ncs2; uracil permease K24206 uacT; uric acid transporter
D RYU24_06910 yicE; xanthine permease K16345 xanP; xanthine permease XanP
D RYU24_10950 adenine permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D RYU24_12790 benE2; membrane protein K05782 benE; benzoate membrane transport protein
D RYU24_15330 benE; benzoate transporter K05782 benE; benzoate membrane transport protein
D RYU24_08040 chromate transporter K07240 chrA; chromate transporter
D RYU24_15150 sodium-independent anion transporter K03321 TC.SULP; sulfate permease, SulP family
D RYU24_19470 ybaR; sodium-independent anion transporter K03321 TC.SULP; sulfate permease, SulP family
D RYU24_03100 phaAB; monovalent cation/H+ antiporter subunit A K05559 phaA; multicomponent K+:H+ antiporter subunit A
D RYU24_03090 phaC; Na+/H+ antiporter subunit C K05560 phaC; multicomponent K+:H+ antiporter subunit C
D RYU24_03080 phaD; monovalent cation/H+ antiporter subunit D K05561 phaD; multicomponent K+:H+ antiporter subunit D
D RYU24_03070 phaE; pesticidal protein Cry1Ba K05562 phaE; multicomponent K+:H+ antiporter subunit E
D RYU24_03060 hypothetical protein K05563 phaF; multicomponent K+:H+ antiporter subunit F
D RYU24_03050 phaG; Na+/H+ antiporter subunit G K05564 phaG; multicomponent K+:H+ antiporter subunit G
D RYU24_29680 mviN; putative lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D RYU24_06980 mdcF; transporter K13936 mdcF; malonate transporter and related proteins
D RYU24_14700 hypothetical protein K13936 mdcF; malonate transporter and related proteins
D RYU24_26340 permease K24180 mleP; malate permease and related proteins
D RYU24_28550 trkD; putative potassium transport system protein kup K03549 kup; KUP system potassium uptake protein
D RYU24_09970 amino acid transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D RYU24_01820 rhtB; threonine transporter RhtB K05834 rhtB; homoserine/homoserine lactone efflux protein
D RYU24_12060 rhtC_2; threonine export protein RhtC K05835 rhtC; threonine efflux protein
D RYU24_07630 rhtC_1; threonine transporter K05835 rhtC; threonine efflux protein
D RYU24_12800 hypothetical protein K11250 leuE; leucine efflux protein
D RYU24_11380 amino acid transporter K26605 azlC; branched chain amino acid efflux pump
D RYU24_11050 hypothetical protein K26606 azlD; branched chain amino acid efflux pump
D RYU24_11370 L-valine transporter subunit YgaH K26606 azlD; branched chain amino acid efflux pump
D RYU24_23110 membrane protein K22736 VIT; vacuolar iron transporter family protein
D RYU24_02730 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D RYU24_29010 UPF0016 family membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D RYU24_26480 tonB_3; TonB-dependent receptor K03832 tonB; periplasmic protein TonB
D RYU24_05010 tonB_1; cell envelope biogenesis protein TonB K03832 tonB; periplasmic protein TonB
D RYU24_24080 tonB_2; protein TonB K03832 tonB; periplasmic protein TonB
D RYU24_09720 pal; peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D RYU24_09740 hypothetical protein K03646 tolA; colicin import membrane protein
D RYU24_09730 tolB; protein TolB K03641 tolB; TolB protein
D RYU24_23250 emrA; hemolysin D K03543 emrA; membrane fusion protein, multidrug efflux system
D RYU24_18500 cyaD; secretion protein HlyD K12542 lapC; membrane fusion protein, adhesin transport system
D RYU24_00430 mdtA; RND transporter K18302 mexJ; membrane fusion protein, multidrug efflux system
D RYU24_08310 acrA; AdeA/AdeI family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RYU24_25590 macA; MacA family efflux pump subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system
D RYU24_00650 ptk; tyrosine protein kinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D RYU24_02690 feoA; iron transporter K04758 feoA; ferrous iron transport protein A
D RYU24_02700 feoB; ferrous iron transporter B K04759 feoB; ferrous iron transport protein B
D RYU24_22830 bacA; microcin B17 transporter K17938 sbmA; peptide/bleomycin uptake transporter
D RYU24_07910 entericidin, EcnA/B family protein K16348 ecnB; entericidin B
D RYU24_08160 magnesium transporter MgtC K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D RYU24_11170 yedX; 5-hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RYU24_16620 5-hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
C 02044 Secretion system [BR:avb02044]
D RYU24_02800 RND transporter K12340 tolC; outer membrane protein
D RYU24_18520 paxB; ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D RYU24_18500 cyaD; secretion protein HlyD K12542 lapC; membrane fusion protein, adhesin transport system
D RYU24_28130 general secretion pathway protein K02452 gspC; general secretion pathway protein C
D RYU24_28120 xcpQ; type II secretion system protein GspD K02453 gspD; general secretion pathway protein D
D RYU24_06390 xcpR_1; type II secretion system protein GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D RYU24_10720 xcpR_2; type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D RYU24_27570 xcpS; type II secretion system protein GspF K02455 gspF; general secretion pathway protein F
D RYU24_27560 xcpT; type II secretion system protein GspG K02456 gspG; general secretion pathway protein G
D RYU24_12450 general secretion pathway protein GspG K02456 gspG; general secretion pathway protein G
D RYU24_12460 xcpV; type II secretion system protein GspI K02458 gspI; general secretion pathway protein I
D RYU24_12470 xcpW; type II secretion system protein GspJ K02459 gspJ; general secretion pathway protein J
D RYU24_12480 xcpX; type II secretion system protein K K02460 gspK; general secretion pathway protein K
D RYU24_19310 type II secretion system protein L K02461 gspL; general secretion pathway protein L
D RYU24_28140 general secretion pathway protein K02463 gspN; general secretion pathway protein N
D RYU24_02960 pilD; type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RYU24_03570 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D RYU24_03590 pilE_1; pilin K02650 pilA; type IV pilus assembly protein PilA
D RYU24_18760 pilE_3; pilin K02650 pilA; type IV pilus assembly protein PilA
D RYU24_02980 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D RYU24_02970 pilC; type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC
D RYU24_03760 comE; pilin K02655 pilE; type IV pilus assembly protein PilE
D RYU24_03770 pilE_2; pilus assembly protein PilE K02655 pilE; type IV pilus assembly protein PilE
D RYU24_25460 pilF; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D RYU24_07840 pilG; response regulator K02657 pilG; twitching motility two-component system response regulator PilG
D RYU24_07850 pilH; response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D RYU24_07860 pilI; twitching motility protein PilT K02659 pilI; twitching motility protein PilI
D RYU24_07870 pilJ; methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D RYU24_03380 pilM; pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D RYU24_03390 pilN; pilus assembly protein PilN K02663 pilN; type IV pilus assembly protein PilN
D RYU24_03400 pilO; pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO
D RYU24_03410 pilP; pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D RYU24_03420 pilQ; pilus assembly protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D RYU24_23510 pilT; twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D RYU24_15040 pilU_1; twitching motility protein PilT K02670 pilU; twitching motility protein PilU
D RYU24_15050 twitching motility protein PilT K02670 pilU; twitching motility protein PilU
D RYU24_23520 pilU_2; twitching motility protein PilT K02670 pilU; twitching motility protein PilU
D RYU24_03720 pilV; type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D RYU24_03730 comB; pilus assembly protein PilW K02672 pilW; type IV pilus assembly protein PilW
D RYU24_03750 comC; pilus assembly protein PilY K02674 pilY1; type IV pilus assembly protein PilY1
D RYU24_12420 pilZ; pilus assembly protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ
D RYU24_03710 fimU; type 4 fimbrial biogenesis protein FimU K08084 fimT; type IV fimbrial biogenesis protein FimT
D RYU24_06860 hypothetical protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D RYU24_06340 membrane protein K02221 yggT; YggT family protein
D RYU24_25290 hypothetical protein K02237 comEA; competence protein ComEA
D RYU24_09560 comEC; DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D RYU24_30170 dsbC_2; thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D RYU24_02670 dsbC_1; thiol:disulfide interchange protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D RYU24_27510 type VI secretion system protein K11904 vgrG; type VI secretion system secreted protein VgrG
D RYU24_01780 type VI secretion system protein K11904 vgrG; type VI secretion system secreted protein VgrG
D RYU24_01260 hypothetical protein K07346 fimC; fimbrial chaperone protein
D RYU24_01250 outer membrane usher protein K07347 fimD; outer membrane usher protein
D RYU24_24740 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RYU24_25690 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RYU24_05990 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RYU24_28070 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RYU24_05980 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D RYU24_03000 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RYU24_04710 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RYU24_24240 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RYU24_14550 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D RYU24_06000 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RYU24_30220 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:avb02042]
D RYU24_08980 ytfL; membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RYU24_06740 yqfA; hemolysin III K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:avb02022]
D RYU24_01680 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D RYU24_01690 phoB; DNA-binding response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D RYU24_27830 envZ; two-component sensor histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RYU24_27820 ompR; DNA-binding response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D RYU24_07330 rstB; two-component sensor histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D RYU24_07320 rstA; DNA-binding response regulator K07661 rstA; two-component system, OmpR family, response regulator RstA
D RYU24_24980 baeS; two-component sensor histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D RYU24_24970 baeR; DNA-binding response regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR
D RYU24_11200 hypothetical protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D RYU24_11190 irlR; DNA-binding response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D RYU24_10750 qseC; two-component sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RYU24_10740 qseB; DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator
D RYU24_05920 barA; hybrid sensor histidine kinase/response regulator K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D RYU24_02630 gacA; DNA-binding response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D RYU24_28220 algZ; alginate biosynthesis protein K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D RYU24_28210 algR; DNA-binding response regulator K08083 algR; two-component system, LytTR family, response regulator AlgR
D RYU24_18200 glnL; PAS domain-containing sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D RYU24_18210 glnG; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D RYU24_02620 pilS; histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D RYU24_02610 pilR; sigma-54-dependent Fis family transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR
D RYU24_07840 pilG; response regulator K02657 pilG; twitching motility two-component system response regulator PilG
D RYU24_07850 pilH; response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D RYU24_15680 nasF; nitrate transporter K22067 nasS; two-component system, oxyanion-binding sensor
D RYU24_15690 nasT; response regulator K07183 nasT; two-component system, response regulator / RNA-binding antiterminator
C 02035 Bacterial motility proteins [BR:avb02035]
D RYU24_07840 pilG; response regulator K02657 pilG; twitching motility two-component system response regulator PilG
D RYU24_07850 pilH; response regulator K02658 pilH; twitching motility two-component system response regulator PilH
D RYU24_07860 pilI; twitching motility protein PilT K02659 pilI; twitching motility protein PilI
D RYU24_07870 pilJ; methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D RYU24_02610 pilR; sigma-54-dependent Fis family transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR
D RYU24_02620 pilS; histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D RYU24_23510 pilT; twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D RYU24_15040 pilU_1; twitching motility protein PilT K02670 pilU; twitching motility protein PilU
D RYU24_15050 twitching motility protein PilT K02670 pilU; twitching motility protein PilU
D RYU24_23520 pilU_2; twitching motility protein PilT K02670 pilU; twitching motility protein PilU
D RYU24_03570 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D RYU24_03590 pilE_1; pilin K02650 pilA; type IV pilus assembly protein PilA
D RYU24_18760 pilE_3; pilin K02650 pilA; type IV pilus assembly protein PilA
D RYU24_02980 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D RYU24_02970 pilC; type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC
D RYU24_02960 pilD; type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RYU24_25460 pilF; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D RYU24_03420 pilQ; pilus assembly protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D RYU24_03410 pilP; pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D RYU24_03400 pilO; pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO
D RYU24_03390 pilN; pilus assembly protein PilN K02663 pilN; type IV pilus assembly protein PilN
D RYU24_03380 pilM; pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D RYU24_12420 pilZ; pilus assembly protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ
D RYU24_03720 pilV; type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D RYU24_03730 comB; pilus assembly protein PilW K02672 pilW; type IV pilus assembly protein PilW
D RYU24_03750 comC; pilus assembly protein PilY K02674 pilY1; type IV pilus assembly protein PilY1
D RYU24_03760 comE; pilin K02655 pilE; type IV pilus assembly protein PilE
D RYU24_03770 pilE_2; pilus assembly protein PilE K02655 pilE; type IV pilus assembly protein PilE
D RYU24_01260 hypothetical protein K07346 fimC; fimbrial chaperone protein
D RYU24_01250 outer membrane usher protein K07347 fimD; outer membrane usher protein
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:avb04812]
D RYU24_07250 hypothetical protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RYU24_22710 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RYU24_29070 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RYU24_29080 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D RYU24_23660 minC; putative septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D RYU24_23670 minD; site-determining protein K03609 minD; septum site-determining protein MinD
D RYU24_23680 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor
D RYU24_01570 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D RYU24_04020 parA; chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D RYU24_12340 soj; cobyric acid synthase CobQ K03496 parA; chromosome partitioning protein
D RYU24_12350 spoOJ; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:avb04147]
D RYU24_27920 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D RYU24_14250 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RYU24_11030 epD; D-erythrose 4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RYU24_20300 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RYU24_17900 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RYU24_00210 ppiA; peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RYU24_21610 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RYU24_00150 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RYU24_00950 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RYU24_28980 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RYU24_28080 tuf1_2; elongation factor Tu K02358 tuf; elongation factor Tu
D RYU24_23760 tuf1_1; elongation factor Tu K02358 tuf; elongation factor Tu
D RYU24_14350 hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RYU24_19860 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D RYU24_02260 fadD_1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RYU24_16000 fadD_2; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RYU24_06790 fadA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_06850 thlA_1; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_12840 fadI; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_15230 thlA_2; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RYU24_09210 sahH; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RYU24_21480 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RYU24_22100 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RYU24_28230 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RYU24_21030 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RYU24_23180 hmgB; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D RYU24_09700 fbp_2; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D RYU24_23230 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RYU24_20660 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RYU24_23270 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RYU24_23140 hpd; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D RYU24_20980 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RYU24_20990 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RYU24_03930 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RYU24_18300 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RYU24_05180 pdhD; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_21870 lpdG; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RYU24_09400 electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit
D RYU24_11800 gdhA_1; glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D RYU24_02990 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RYU24_26400 blc_2; membrane protein K03098 APOD; apolipoprotein D and lipocalin family protein
D RYU24_20320 blc_1; membrane protein K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:avb02048]
D RYU24_11630 hypothetical protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D RYU24_13590 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RYU24_02510 restriction endonuclease subunit M K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D RYU24_13520 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RYU24_25820 type III restriction endonuclease EcoPI subunit R K01156 res; type III restriction enzyme [EC:3.1.21.5]
D RYU24_25830 type III restriction endonuclease EcoP15I subunit M K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D RYU24_05570 hypothetical protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D RYU24_11730 hypothetical protein K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D RYU24_11740 restriction endonuclease K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D RYU24_01620 restriction endonuclease K07448 mrr; restriction system protein
D RYU24_01390 phosphatidylinositol kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D RYU24_17150 hypothetical protein K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D RYU24_17140 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D RYU24_29070 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RYU24_07250 hypothetical protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RYU24_22710 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RYU24_02250 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RYU24_29340 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RYU24_03250 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RYU24_04790 succinate dehydrogenase assembly factor 2 K09159 cptB; antitoxin CptB
D RYU24_17570 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:avb01504]
D RYU24_23430 hypothetical protein K10673 strA; streptomycin 3"-kinase [EC:2.7.1.87]
D RYU24_23420 aminoglycoside O-phosphotransferase APH(6)-Id K04343 strB; streptomycin 6-kinase [EC:2.7.1.72]
D RYU24_03970 cmr; MFS transporter K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D RYU24_08790 catB2; chloramphenicol acetyltransferase CAT K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28]
D RYU24_23330 dihydropteroate synthase K18824 sul2; dihydropteroate synthase type 2 [EC:2.5.1.15]
D RYU24_11200 hypothetical protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D RYU24_11190 irlR; DNA-binding response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D RYU24_08310 acrA; AdeA/AdeI family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D RYU24_08300 acrB2; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RYU24_09010 mexB_1; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RYU24_09020 mexB_2; multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D RYU24_08290 oprM; adeC/adeK/oprM family multidrug efflux complex outer membrane factor K18139 oprM; outer membrane protein, multidrug efflux system
D RYU24_00420 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D RYU24_00430 mdtA; RND transporter K18302 mexJ; membrane fusion protein, multidrug efflux system
D RYU24_00440 nolG_1; acriflavin resistance protein K18303 mexK; multidrug efflux pump
D RYU24_15190 zntR; transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D RYU24_02800 RND transporter K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:avb00537]
D RYU24_20980 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D RYU24_20990 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:avb03100]
D RYU24_t00190 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00840 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00420 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00060 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00220 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00640 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00130 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00020 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RYU24_t00160 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYU24_t00170 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYU24_t00700 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYU24_t00630 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYU24_t00390 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYU24_t00150 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RYU24_t00520 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RYU24_t00380 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RYU24_t00530 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RYU24_t00250 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RYU24_t00290 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RYU24_t00270 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RYU24_t00240 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RYU24_t00600 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RYU24_t00320 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RYU24_t00330 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RYU24_t00340 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RYU24_t00310 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RYU24_t00120 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYU24_t00550 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYU24_t00570 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYU24_t00560 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYU24_t00590 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYU24_t00580 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RYU24_t00770 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RYU24_t00430 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RYU24_t00040 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RYU24_t00030 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RYU24_t00690 tRNA-His K14226 tRNA-His; tRNA His
D RYU24_t00670 tRNA-His K14226 tRNA-His; tRNA His
D RYU24_t00410 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYU24_t00180 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYU24_t00650 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYU24_t00210 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYU24_t00010 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYU24_t00050 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYU24_t00850 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RYU24_t00360 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00440 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00070 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00460 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00500 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00610 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00470 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00480 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00200 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RYU24_t00730 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RYU24_t00740 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RYU24_t00720 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RYU24_t00100 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYU24_t00350 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYU24_t00080 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYU24_t00400 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYU24_t00620 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYU24_t00090 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYU24_t00110 tRNA-Met K14230 tRNA-Met; tRNA Met
D RYU24_t00800 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RYU24_t00810 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RYU24_t00660 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RYU24_t00710 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RYU24_t00680 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RYU24_t00140 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYU24_t00540 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYU24_t00370 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYU24_t00820 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RYU24_t00830 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RYU24_t00760 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RYU24_t00790 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RYU24_t00490 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RYU24_t00450 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RYU24_t00750 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RYU24_t00780 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RYU24_t00260 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYU24_t00300 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYU24_t00280 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYU24_t00510 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYU24_t00230 tRNA-Val K14237 tRNA-Val; tRNA Val
D RYU24_r00010 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00100 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00180 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00070 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00130 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00210 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RYU24_r00050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00110 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00140 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00200 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00170 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00080 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RYU24_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00160 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00190 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00120 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00090 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_r00150 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RYU24_tm00010 transfer-messenger RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D RYU24_00540 aldehyde reductase K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D RYU24_29960 yliI; glucose dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D RYU24_26510 calB; aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D RYU24_14190 fadH_1; 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D RYU24_21010 fadH_2; NADPH-dependent 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D RYU24_27480 etfD; electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D RYU24_21720 NAD(P)H quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D RYU24_15960 nitronate monooxygenase K23948 E1.6.5.9; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D RYU24_19450 mdaB; NADPH quinone reductase MdaB K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D RYU24_29220 acpD; FMN-dependent NADH-azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D RYU24_10590 ahpF_1; alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D RYU24_12100 ahpF_2; alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D RYU24_26450 msrA; peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D RYU24_11310 msrB; peptide methionine sulfoxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D RYU24_06170 yfcG; thiol:disulfide oxidoreductase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D RYU24_09980 bcp; peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RYU24_24750 peroxidase K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RYU24_28610 ahpC_2; peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D RYU24_12140 ahpC_1; peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D RYU24_06400 ohr; organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D RYU24_01810 yfeX; peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D RYU24_28600 quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D RYU24_01650 quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D RYU24_20810 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D RYU24_26270 piuC; PKHD-type hydroxylase K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-]
D RYU24_04460 fhp; flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D RYU24_11460 soxA; alkanesulfonate monooxygenase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D RYU24_07530 fpr_1; ferredoxin--NADP(+) reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D RYU24_10670 fpr_2; ferredoxin--NADP(+) reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D RYU24_28350 tehB; tellurite resistance methyltransferase TehB K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D RYU24_12160 fabH; beta-ketoacyl-ACP synthase III K16872 E2.3.1.207; beta-ketodecanoyl-[acyl-carrier-protein] synthase [EC:2.3.1.207]
D RYU24_27540 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RYU24_06680 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270]
D RYU24_24960 yhbS; GCN5 family N-acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D RYU24_21740 hypothetical protein K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D RYU24_27020 acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-]
D RYU24_14600 N-acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D RYU24_29320 N-acetyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]
D RYU24_23720 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D RYU24_19760 transglutaminase K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D RYU24_23730 ate; putative arginyl-tRNA--protein transferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D RYU24_26360 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RYU24_13150 putative phosphoenolpyruvate synthase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D RYU24_27720 polyphosphate--AMP phosphotransferase K23753 ppk2; AMP-polyphosphate phosphotransferase [EC:2.7.4.33]
D RYU24_25200 glnE; glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D RYU24_11970 ltrA_1; group II intron reverse transcriptase/maturase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D RYU24_20750 diguanylate cyclase K13069 E2.7.7.65; diguanylate cyclase [EC:2.7.7.65]
D RYU24_24920 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D RYU24_28160 ysmA; thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RYU24_09770 tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RYU24_10190 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RYU24_12900 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RYU24_05310 trpH; phosphatase K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D RYU24_19320 phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D RYU24_25720 hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RYU24_12430 ycfH; deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RYU24_14890 hypothetical protein K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D RYU24_16800 acyl-CoA esterase K01175 ybfF; esterase [EC:3.1.-.-]
D RYU24_02080 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RYU24_08260 hypothetical protein K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RYU24_06410 carbon-nitrogen hydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D RYU24_16560 hypothetical protein K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32]
D RYU24_17920 maf; Maf-like protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D RYU24_19780 ATPase AAA K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RYU24_10100 esterase K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D RYU24_24220 alpha/beta hydrolase K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D RYU24_24230 hypothetical protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D RYU24_20430 dehydratase K26399 K26399; arabinonate dehydratase [EC:4.2.1.5]
D RYU24_12020 yjeF; NAD(P)H-hydrate epimerase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D RYU24_08170 fbp_1; peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D RYU24_30060 mpl; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D RYU24_21450 rnfB; iron-sulfur protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D RYU24_17620 fdx_2; ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S
D RYU24_18440 fdxA; ferredoxin 1 K05524 fdxA; ferredoxin
D RYU24_17580 nifU; iron-sulfur cluster assembly scaffold protein IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D RYU24_25700 hypothetical protein K15536 cybC; soluble cytochrome b562
D RYU24_09390 etfB; electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit
D RYU24_27860 hypothetical protein K09165 K09165; dodecin
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D RYU24_23500 yggS; YggS family pyridoxal phosphate enzyme K06997 yggS; PLP dependent protein
D RYU24_08910 N-acetyltransferase K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D RYU24_12570 membrane protein K08992 lapA; lipopolysaccharide assembly protein A
D RYU24_25160 lipooligosaccharide biosynthesis protein LpsA K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D RYU24_27760 ubiB; 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D RYU24_04160 cspA_1; cold-shock protein K03704 cspA; cold shock protein
D RYU24_07490 cold-shock protein K03704 cspA; cold shock protein
D RYU24_19370 cspG; cold-shock protein K03704 cspA; cold shock protein
D RYU24_20880 cspA_2; cold-shock protein K03704 cspA; cold shock protein
D RYU24_02470 glnK; nitrogen regulatory protein P-II 1 K04752 glnK; nitrogen regulatory protein P-II 2
D RYU24_27810 tex; RNA-binding transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D RYU24_17340 clpS; ATP-dependent Clp protease adapter protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D RYU24_26250 tig; trigger factor K03545 tig; trigger factor
D RYU24_16730 ureE; urease accessory protein UreE K03187 ureE; urease accessory protein
D RYU24_16720 ureF; urease accessory protein UreF K03188 ureF; urease accessory protein
D RYU24_16710 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D RYU24_16690 ureD; urease accessory protein UreD K03190 ureD; urease accessory protein
D RYU24_16700 ureJ; urease accessory protein K03192 ureJ; urease accessory protein
D RYU24_08740 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D RYU24_02450 hypothetical protein K07391 comM; magnesium chelatase family protein
D RYU24_05140 oxidoreductase K07394 K07394; SM-20-related protein
D RYU24_13010 peptidase K07395 K07395; putative proteasome-type protease
D RYU24_01660 hypothetical protein K07397 yhfA; putative redox protein
D RYU24_19710 osmotically inducible protein C K07397 yhfA; putative redox protein
D RYU24_22260 nfuA; Fe/S biogenesis protein NfuA K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
D RYU24_21990 atl1; methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D RYU24_05330 radC; hypothetical protein K03630 radC; DNA repair protein RadC
D RYU24_21230 UPF0102 protein K07460 yraN; putative endonuclease
D RYU24_02060 smf; DNA processing protein DprA K04096 smf; DNA processing protein
D RYU24_29640 rarA; ATPase AAA K07478 ycaJ; putative ATPase
D RYU24_05540 hypothetical protein K06919 K06919; putative DNA primase/helicase
D RYU24_05940 3'-5' exonuclease K07501 K07501; 3'-5' exonuclease
D RYU24_25320 hypothetical protein K07480 insB; insertion element IS1 protein InsB
D RYU24_23360 IS6 family transposase K18320 IS15; transposase, IS6 family
D RYU24_17750 IS30 family transposase K07482 K07482; transposase, IS30 family
D RYU24_22950 IS30 family transposase K07482 K07482; transposase, IS30 family
D RYU24_17090 transposase K07483 K07483; transposase
D RYU24_22360 transposase K07483 K07483; transposase
D RYU24_01210 transposase K07483 K07483; transposase
D RYU24_01280 transposase K07483 K07483; transposase
D RYU24_15550 transposase K07483 K07483; transposase
D RYU24_25350 IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase
D RYU24_00480 transposase K07491 rayT; REP-associated tyrosine transposase
D RYU24_00490 IS element transposase K07496 K07496; putative transposase
D RYU24_03660 transposase K07496 K07496; putative transposase
D RYU24_25340 transposase K07496 K07496; putative transposase
D RYU24_28660 transposase K07496 K07496; putative transposase
D RYU24_01220 transposase K07497 K07497; putative transposase
D RYU24_02340 transposase K07497 K07497; putative transposase
D RYU24_06140 integrase K07497 K07497; putative transposase
D RYU24_11880 transposase K07497 K07497; putative transposase
D RYU24_15560 transposase K07497 K07497; putative transposase
D RYU24_17080 hypothetical protein K07497 K07497; putative transposase
D RYU24_17810 integrase K07497 K07497; putative transposase
D RYU24_22350 hypothetical protein K07497 K07497; putative transposase
D RYU24_24260 integrase K07497 K07497; putative transposase
D RYU24_01520 integrase K14059 int; integrase
C 99979 Viral proteins
C 99998 Others
D RYU24_14400 nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D RYU24_07810 nolG_2; nodulation protein NolG K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D RYU24_22300 pitA; phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D RYU24_00300 transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D RYU24_08030 transporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D RYU24_09290 transporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D RYU24_14130 braZ; branched-chain amino acid transport system carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D RYU24_29560 sodium transporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D RYU24_18250 transporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D RYU24_18260 transporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family
C 99978 Cell growth
D RYU24_05300 ispZ; putative intracellular septation protein A K06190 ispZ; intracellular septation protein
C 99993 Cell motility
D RYU24_02890 penicillin-binding protein activator LpoB K07337 K07337; penicillin-binding protein activator
C 99995 Signaling proteins
D RYU24_19800 cstA; carbon starvation protein A K06200 cstA; carbon starvation protein
D RYU24_06920 typA; GTP-binding protein K06207 typA; GTP-binding protein
D RYU24_27260 membrane protein K07168 K07168; CBS domain-containing membrane protein
D RYU24_05050 phoL; ATP-binding protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D RYU24_05250 UPF0234 protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D RYU24_08370 lolA; outer-membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein
D RYU24_08660 lolB; outer-membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB
D RYU24_06440 hypothetical protein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D RYU24_18110 ompH; membrane protein K06142 hlpA; outer membrane protein
D RYU24_19930 nlpD; lipoprotein K06194 nlpD; lipoprotein NlpD
D RYU24_02170 yegX; lysozyme K07273 acm; lysozyme
D RYU24_27940 ompW_2; membrane protein K07275 ompW; outer membrane protein
D RYU24_22550 membrane protein K07340 ybbJ; inner membrane protein
D RYU24_09460 hypothetical protein K01993 ABC-2.TX; HlyD family secretion protein
D RYU24_16110 permease K02005 ABC.CD.TX; HlyD family secretion protein
C 99994 Others
D RYU24_02810 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D RYU24_03630 bfd; regulatory or redox protein complexing with Bfr in iron storage and mobility K02192 bfd; bacterioferritin-associated ferredoxin
D RYU24_30130 terC; tellurium resistance protein TerC K05794 terC; tellurite resistance protein TerC
D RYU24_23570 hemerythrin K07216 hr; hemerythrin
D RYU24_16200 pcoB; copper resistance protein B K07233 pcoB; copper resistance protein B
B
B 09194 Poorly characterized
C 99996 General function prediction only
D RYU24_19280 colicin V biosynthesis protein K03558 cvpA; membrane protein required for colicin V production
D RYU24_24290 paaY; carbonic anhydrase K02617 paaY; phenylacetic acid degradation protein
D RYU24_08050 ylbK_1; alpha/beta hydrolase K07001 K07001; NTE family protein
D RYU24_22540 ylbK_2; esterase K07001 K07001; NTE family protein
D RYU24_22500 haloacid dehalogenase K07025 K07025; putative hydrolase of the HAD superfamily
D RYU24_00110 erpA; iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D RYU24_04950 UPF0761 membrane protein K07058 K07058; membrane protein
D RYU24_12050 fxsA; FxsA cytoplasmic membrane protein K07113 fxsA; UPF0716 protein FxsA
D RYU24_08550 UPF0176 protein K07146 K07146; UPF0176 protein
D RYU24_20050 hflD; high frequency lysogenization protein HflD K07153 hflD; high frequency lysogenization protein
D RYU24_06840 VOC family protein K04750 phnB; PhnB protein
D RYU24_18970 hypothetical protein K11477 glcG; glc operon protein GlcG
D RYU24_03480 LemA family protein K03744 lemA; LemA protein
D RYU24_06040 protein LemA K03744 lemA; LemA protein
D RYU24_26670 hypothetical protein K03745 slyX; SlyX protein
D RYU24_01600 dedA_1; cytochrome o ubiquinol oxidase K03975 dedA; membrane-associated protein
D RYU24_02530 dedA_2; cytochrome o ubiquinol oxidase K03975 dedA; membrane-associated protein
D RYU24_20070 yjdF; membrane protein K08984 yjdF; putative membrane protein
D RYU24_07270 hypothetical protein K08995 K08995; putative membrane protein
D RYU24_02220 preprotein translocase SecA K09858 K09858; SEC-C motif domain protein
D RYU24_25030 protein PsiE K13256 psiE; protein PsiE
D RYU24_07160 phnA; hypothetical protein K06193 phnA; protein PhnA
C 99997 Function unknown
D RYU24_29480 hypothetical protein K06867 K06867; uncharacterized protein
D RYU24_00260 ripk4; hypothetical protein K06867 K06867; uncharacterized protein
D RYU24_03490 hypothetical protein K06872 K06872; uncharacterized protein
D RYU24_05210 lysophospholipase K06889 K06889; uncharacterized protein
D RYU24_19150 ATPase K06923 K06923; uncharacterized protein
D RYU24_08560 hypothetical protein K06938 K06938; uncharacterized protein
D RYU24_28990 hypothetical protein K06940 K06940; uncharacterized protein
D RYU24_06460 GTP-binding protein K06945 K06945; uncharacterized protein
D RYU24_28590 hypothetical protein K06954 K06954; uncharacterized protein
D RYU24_30110 N-acetyltransferase K06975 K06975; uncharacterized protein
D RYU24_24610 peptidase K06992 K06992; uncharacterized protein
D RYU24_20730 hypothetical protein K06995 K06995; uncharacterized protein
D RYU24_29350 yqiA; esterase K07000 K07000; uncharacterized protein
D RYU24_01190 nuclease K07004 K07004; uncharacterized protein
D RYU24_14980 hypothetical protein K07006 K07006; uncharacterized protein
D RYU24_10930 rp471; hydrolase K07018 K07018; uncharacterized protein
D RYU24_14210 abhD3; alpha/beta hydrolase K07019 K07019; uncharacterized protein
D RYU24_04410 glyoxalase K07032 K07032; uncharacterized protein
D RYU24_08510 hypothetical protein K07039 K07039; uncharacterized protein
D RYU24_24830 metal-dependent hydrolase K07044 K07044; uncharacterized protein
D RYU24_04420 hypothetical protein K07044 K07044; uncharacterized protein
D RYU24_23750 metal-dependent hydrolase K07044 K07044; uncharacterized protein
D RYU24_22020 neutral zinc metallopeptidase K07054 K07054; uncharacterized protein
D RYU24_04860 metal-binding protein K07070 K07070; uncharacterized protein
D RYU24_23290 yfcH; nucleoside-diphosphate sugar epimerase K07071 K07071; uncharacterized protein
D RYU24_14560 hypothetical protein K07078 K07078; uncharacterized protein
D RYU24_14570 hypothetical protein K07078 K07078; uncharacterized protein
D RYU24_16840 hypothetical protein K07078 K07078; uncharacterized protein
D RYU24_07730 C4-dicarboxylate ABC transporter K07080 K07080; uncharacterized protein
D RYU24_27240 hypothetical protein K07090 K07090; uncharacterized protein
D RYU24_00380 membrane protein K07090 K07090; uncharacterized protein
D RYU24_03860 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein
D RYU24_14770 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein
D RYU24_21540 permease K07090 K07090; uncharacterized protein
D RYU24_24190 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein
D RYU24_06700 phosphohydrolase K07098 K07098; uncharacterized protein
D RYU24_16150 hypothetical protein K07112 K07112; uncharacterized protein
D RYU24_16160 hypothetical protein K07112 K07112; uncharacterized protein
D RYU24_18790 hypothetical protein K07112 K07112; uncharacterized protein
D RYU24_21240 hypothetical protein K07121 K07121; uncharacterized protein
D RYU24_25620 hypothetical protein K07126 K07126; uncharacterized protein
D RYU24_26030 hypothetical protein K07126 K07126; uncharacterized protein
D RYU24_09250 hypothetical protein K07126 K07126; uncharacterized protein
D RYU24_30230 hypothetical protein K08998 K08998; uncharacterized protein
D RYU24_19210 aspartyl-tRNA amidotransferase subunit B K09117 K09117; uncharacterized protein
D RYU24_08480 DUF493 domain-containing protein K09158 K09158; uncharacterized protein
D RYU24_29660 UPF0260 protein K09160 K09160; uncharacterized protein
D RYU24_14030 hemolysin K09712 K09712; uncharacterized protein
D RYU24_09510 UPF0178 protein K09768 K09768; uncharacterized protein
D RYU24_21330 hypothetical protein K09779 K09779; uncharacterized protein
D RYU24_05290 hypothetical protein K09780 K09780; uncharacterized protein
D RYU24_22030 membrane protein K09781 K09781; uncharacterized protein
D RYU24_07930 inner membrane protein K09790 K09790; uncharacterized protein
D RYU24_27650 hypothetical protein K09794 K09794; uncharacterized protein
D RYU24_07080 SIMPL domain-containing protein K09797 K09797; uncharacterized protein
D RYU24_28670 hypothetical protein K09799 K09799; uncharacterized protein
D RYU24_23550 UPF0125 protein K09801 K09801; uncharacterized protein
D RYU24_02870 hypothetical protein K09859 K09859; uncharacterized protein
D RYU24_10940 UPF0246 protein K09861 K09861; uncharacterized protein
D RYU24_27410 yacG; DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein
D RYU24_21350 hypothetical protein K09895 K09895; uncharacterized protein
D RYU24_14430 hypothetical protein K09902 K09902; uncharacterized protein
D RYU24_14580 DUF2057 domain-containing protein K09909 K09909; uncharacterized protein
D RYU24_15120 yaiL; hypothetical protein K09912 K09912; uncharacterized protein
D RYU24_10810 hypothetical protein K09916 K09916; uncharacterized protein
D RYU24_30050 membrane protein K09922 K09922; uncharacterized protein
D RYU24_24460 hypothetical protein K09956 K09956; uncharacterized protein
D RYU24_17910 hypothetical protein K09966 K09966; uncharacterized protein
D RYU24_15510 urea carboxylase K09967 K09967; uncharacterized protein
D RYU24_15520 urea carboxylase K09967 K09967; uncharacterized protein
D RYU24_07920 hypothetical protein K09977 K09977; uncharacterized protein
D RYU24_27470 hypothetical protein K09986 K09986; uncharacterized protein
D RYU24_14460 hypothetical protein K09989 K09989; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 1, 2024