+D GENES KO
#
KEGG Orthology (KO) - Brucella abortus bv. 2 86/8/59
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:babo00010]
D DK55_2951 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DK55_336 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DK55_2354 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DK55_1268 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D DK55_2355 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DK55_1144 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DK55_1690 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DK55_1691 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D DK55_2954 gpm1; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DK55_1139 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DK55_1709 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DK55_531 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D DK55_1136 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D DK55_1135 hypothetical protein K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D DK55_3142 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DK55_1134 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DK55_1861 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2678 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1133 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_147 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DK55_217 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DK55_1068 alcohol dehydrogenase GroES-like domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DK55_2487 iron-containing alcohol dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D DK55_864 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D DK55_216 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2920 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2543 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_215 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D DK55_2747 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DK55_1760 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DK55_870 galm; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D DK55_77 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D DK55_2024 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:babo00020]
D DK55_1153 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D DK55_111 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D DK55_1199 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D DK55_1866 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D DK55_1865 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DK55_1861 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2678 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1133 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1867 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DK55_1868 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DK55_1061 succinate CoA transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D DK55_1845 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DK55_1844 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DK55_1847 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D DK55_1846 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D DK55_964 hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D DK55_2183 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D DK55_1869 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DK55_1734 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D DK55_2024 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D DK55_1136 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D DK55_1135 hypothetical protein K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D DK55_3142 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DK55_1134 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:babo00030]
D DK55_336 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DK55_2447 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D DK55_2446 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D DK55_2106 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D DK55_862 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D DK55_1689 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DK55_1754 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D DK55_1015 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D DK55_2793 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase family protein K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D DK55_3114 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D DK55_77 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D DK55_1108 phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D DK55_1506 prs; ribose-phosphate diphosphokinase family protein K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D DK55_2445 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D DK55_3188 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D DK55_869 pfkB carbohydrate kinase family protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D DK55_401 hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D DK55_2355 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DK55_2354 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DK55_1268 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
C 00040 Pentose and glucuronate interconversions [PATH:babo00040]
D DK55_2249 short chain dehydrogenase family protein K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D DK55_2412 uxaC; uronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D DK55_2413 glucuronate isomerase family protein K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D DK55_2410 uxuA; mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D DK55_2414 mannitol dehydrogenase Rossmann domain protein K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D DK55_2660 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D DK55_3175 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DK55_862 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D DK55_575 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D DK55_574 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D DK55_1442 hypothetical protein K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15]
D DK55_2286 dehydratase family protein K22186 xylD; xylonate dehydratase [EC:4.2.1.82]
D DK55_223 aldehyde dehydrogenase family protein K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-]
D DK55_2879 FGGY-pentulose kinase family protein K00875 rbtK; D-ribulokinase [EC:2.7.1.47]
D DK55_2880 rbtD; ribitol 2-dehydrogenase K00039 rbtD; ribitol 2-dehydrogenase [EC:1.1.1.56]
D DK55_3010 hypothetical protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:babo00051]
D DK55_133 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D DK55_2811 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D DK55_565 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D DK55_2810 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D DK55_566 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D DK55_552 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D DK55_3010 hypothetical protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D DK55_260 hypothetical protein K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68]
D DK55_258 bdh2; 3-hydroxybutyrate dehydrogenase type 2 K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434]
D DK55_2354 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DK55_1268 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D DK55_574 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D DK55_2355 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DK55_1144 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DK55_2028 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D DK55_872 HAD hydrolase, IA, variant 1 family protein K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
C 00052 Galactose metabolism [PATH:babo00052]
D DK55_870 galm; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D DK55_1071 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DK55_3175 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DK55_77 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D DK55_2951 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DK55_2285 hypothetical protein K00035 gal; D-galactose 1-dehydrogenase [EC:1.1.1.48]
D DK55_2287 2-keto-3-deoxy-galactonokinase family protein K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D DK55_2288 dihydroorotate dehydrogenase family protein K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
C 00053 Ascorbate and aldarate metabolism [PATH:babo00053]
D DK55_2660 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D DK55_216 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2920 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2543 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:babo00500]
D DK55_3175 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DK55_77 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D DK55_2951 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DK55_336 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DK55_133 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:babo00520]
D DK55_889 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D DK55_2315 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D DK55_2689 badF/BadG/BcrA/BcrD ATPase family protein K18676 gspK; glucosamine kinase [EC:2.7.1.8]
D DK55_3024 badF/BadG/BcrA/BcrD ATPase family protein K18676 gspK; glucosamine kinase [EC:2.7.1.8]
D DK55_133 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D DK55_2626 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DK55_2314 SIS domain protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DK55_1656 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D DK55_2625 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D DK55_933 hypothetical protein K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D DK55_2032 tRNA threonylcarbamoyl adenosine modification protein YjeE K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D DK55_2033 nucleotidyl transferase family protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D DK55_305 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D DK55_1413 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D DK55_2766 putative N-acetylmannosamine-6-phosphate 2-epimerase domain protein K13967 nanEK; N-acetylmannosamine-6-phosphate 2-epimerase / N-acetylmannosamine kinase [EC:5.1.3.9 2.7.1.60]
D DK55_2663 3-beta hydroxysteroid dehydrogenase/isomerase family protein K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D DK55_2662 galE; UDP-glucose 4-epimerase GalE K12448 UXE; UDP-arabinose 4-epimerase [EC:5.1.3.5]
D DK55_2951 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DK55_77 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D DK55_3175 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DK55_2660 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D DK55_1071 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DK55_2028 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D DK55_336 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DK55_565 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D DK55_2810 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D DK55_566 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D DK55_2811 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D DK55_552 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D DK55_551 perosamine synthetase K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00620 Pyruvate metabolism [PATH:babo00620]
D DK55_2747 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DK55_1760 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DK55_1136 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D DK55_1135 hypothetical protein K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D DK55_3142 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DK55_1134 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DK55_1861 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2678 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1133 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_217 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DK55_1068 alcohol dehydrogenase GroES-like domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DK55_2487 iron-containing alcohol dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D DK55_864 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D DK55_147 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DK55_2792 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DK55_1709 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DK55_1964 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DK55_916 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DK55_915 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DK55_2038 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DK55_216 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2920 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2543 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_215 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D DK55_1061 succinate CoA transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D DK55_1981 coenzyme A transferase family protein K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
D DK55_2307 nitronate monooxygenase family protein K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D DK55_1395 hypothetical protein K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4]
D DK55_75 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D DK55_1263 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D DK55_1876 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D DK55_1493 metallo-beta-lactamase superfamily protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D DK55_28 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D DK55_162 phosphate acetyl/butaryl transferase family protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D DK55_163 malic enzyme, NAD binding domain protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D DK55_1023 dme; NAD-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D DK55_1734 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D DK55_1869 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DK55_964 hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D DK55_2183 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D DK55_2024 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D DK55_531 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D DK55_1618 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D DK55_2749 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2430 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1726 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_699 putative 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D DK55_700 HMGL-like family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D DK55_1538 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D DK55_697 putative 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D DK55_698 putative 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:babo00630]
D DK55_1581 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D DK55_2747 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DK55_1760 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DK55_1618 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D DK55_1869 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DK55_1153 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D DK55_111 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D DK55_2749 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2430 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1726 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_834 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D DK55_1190 pccA; propionyl-CoA carboxylase, alpha subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D DK55_1189 pccB; propionyl-CoA carboxylase, beta subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D DK55_1191 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D DK55_2171 FAD binding domain protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D DK55_2172 FAD binding domain protein K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]
D DK55_2173 4Fe-4S binding domain protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D DK55_2804 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
D DK55_15 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K00015 gyaR; glyoxylate reductase [EC:1.1.1.26]
D DK55_28 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D DK55_339 HAD hydrolase, IA, variant 1 family protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D DK55_1008 HAD hydrolase, IA, variant 1 family protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D DK55_1014 gph; phosphoglycolate phosphatase, bacterial K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D DK55_1010 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_2457 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_2488 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_782 aminotransferase class I and II family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DK55_2495 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D DK55_2493 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D DK55_1861 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2678 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1133 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2494 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D DK55_401 hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D DK55_3188 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D DK55_2317 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D DK55_2296 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:babo00640]
D DK55_2747 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DK55_1760 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DK55_1693 AMP-binding enzyme family protein K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D DK55_1981 coenzyme A transferase family protein K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
D DK55_2792 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DK55_2682 bkdA1; 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D DK55_2681 bkdA2; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D DK55_2985 dehydrogenase E1 component family protein K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D DK55_3141 hypothetical protein K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D DK55_2680 bkdB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D DK55_1861 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2678 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1133 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2750 hypothetical protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D DK55_22 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2988 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2431 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DK55_1964 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DK55_916 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DK55_915 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DK55_2038 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DK55_2301 beta-eliminating lyase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D DK55_1190 pccA; propionyl-CoA carboxylase, alpha subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D DK55_1189 pccB; propionyl-CoA carboxylase, beta subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D DK55_834 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D DK55_1191 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D DK55_1868 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DK55_1867 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DK55_1778 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D DK55_2950 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
C 00650 Butanoate metabolism [PATH:babo00650]
D DK55_2749 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2430 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1726 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1905 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D DK55_2987 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D DK55_2213 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D DK55_2431 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DK55_22 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2988 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_1979 3-hydroxypropionyl-coenzyme A dehydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2750 hypothetical protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D DK55_1845 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DK55_1844 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DK55_1847 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D DK55_1846 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D DK55_2818 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D DK55_205 aminotransferase class-III family protein K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96]
D DK55_1612 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DK55_2976 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DK55_2779 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DK55_1061 succinate CoA transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D DK55_37 HMGL-like family protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D DK55_41 acetoacetate-CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D DK55_1732 3-hydroxybutyrate dehydrogenase family protein K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D DK55_1376 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DK55_2282 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DK55_1375 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:babo00660]
D DK55_1376 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DK55_2282 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DK55_1375 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DK55_2160 coA-transferase III family protein K18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22]
D DK55_1868 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DK55_1867 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DK55_1849 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D DK55_2345 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D DK55_2338 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:babo00562]
D DK55_2202 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D DK55_2501 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D DK55_1675 suhB; extragenic suppressor protein suhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D DK55_2507 idhA; inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D DK55_2503 xylose isomerase-like TIM barrel family protein K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D DK55_2504 thiamine pyrophosphate enzyme, central domain protein K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D DK55_2502 kduI/IolB family protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D DK55_2505 pfkB carbohydrate kinase family protein K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D DK55_1778 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D DK55_1144 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:babo00190]
D DK55_818 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 family protein K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D DK55_819 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D DK55_820 nqo5; NADH-quinone oxidoreductase chain 5 K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D DK55_821 nuoD; NADH dehydrogenase (quinone), D subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D DK55_822 nuoE; NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D DK55_823 nuoF; NADH oxidoreductase (quinone), F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D DK55_824 nuoG; NADH dehydrogenase (quinone), G subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D DK55_825 NADH dehydrogenase family protein K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D DK55_826 NADH-quinone oxidoreductase, chain I family protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D DK55_827 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D DK55_828 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L family protein K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D DK55_829 proton-translocating NADH-quinone oxidoreductase, chain L family protein K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D DK55_830 proton-translocating NADH-quinone oxidoreductase, chain M family protein K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D DK55_831 proton-translocating NADH-quinone oxidoreductase, chain N family protein K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D DK55_2719 FAD dependent oxidoreductase family protein K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D DK55_1845 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DK55_1844 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DK55_1847 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D DK55_1846 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D DK55_1516 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D DK55_1515 hypothetical protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D DK55_1514 cytochrome C1 family protein K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D DK55_501 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D DK55_66 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D DK55_504 ctaE; cytochrome c oxidase subunit 3 K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D DK55_64 cytochrome C and Quinol oxidase polypeptide I family protein K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D DK55_500 ctaD; cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D DK55_499 coxB; cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D DK55_502 ctaG; cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D DK55_803 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D DK55_408 ccoN; cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D DK55_407 ccoO; cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D DK55_406 cbb3-type cytochrome oxidase component FixQ family protein K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D DK55_405 ccoP; cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D DK55_65 cyoC; cytochrome o ubiquinol oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D DK55_63 cytochrome C and Quinol oxidase polypeptide I family protein K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D DK55_62 cyoA; ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D DK55_2693 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D DK55_2692 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D DK55_2691 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D DK55_60 cytochrome c family protein K08738 CYC; cytochrome c
D DK55_2166 cycA; D-serine/D-alanine/glycine transporter K08738 CYC; cytochrome c
D DK55_1750 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D DK55_1748 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D DK55_1749 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D DK55_1751 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D DK55_1747 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D DK55_424 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D DK55_426 plant ATP synthase F0 family protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D DK55_427 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D DK55_425 ATP synthase subunit C family protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D DK55_1929 ppa; inorganic pyrophosphatase:Bacterial/Archaeal inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D DK55_769 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D DK55_346 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:babo00710]
D DK55_1691 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D DK55_1690 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DK55_2355 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DK55_2354 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DK55_1268 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D DK55_1689 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DK55_1015 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D DK55_1144 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DK55_862 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D DK55_1754 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D DK55_2024 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D DK55_531 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D DK55_162 phosphate acetyl/butaryl transferase family protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D DK55_163 malic enzyme, NAD binding domain protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D DK55_1023 dme; NAD-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D DK55_1869 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:babo00720]
D DK55_531 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D DK55_1734 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D DK55_1869 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DK55_964 hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D DK55_2183 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D DK55_1845 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DK55_1844 succinate dehydrogenase and fumarate reductase iron-sulfur family protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DK55_1847 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D DK55_1846 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D DK55_1867 sucD; succinate-CoA ligase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DK55_1868 sucC; succinate-CoA ligase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DK55_2749 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2430 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1726 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1199 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D DK55_111 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D DK55_1964 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DK55_916 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DK55_915 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DK55_2038 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DK55_2161 hypothetical protein K09709 meh; 3-methylfumaryl-CoA hydratase [EC:4.2.1.153]
D DK55_834 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D DK55_1191 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D DK55_2444 tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D DK55_1433 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D DK55_2792 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DK55_2747 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DK55_1760 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:babo00680]
D DK55_147 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DK55_143 fghA; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D DK55_782 aminotransferase class I and II family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DK55_401 hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D DK55_1139 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DK55_1869 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DK55_2355 fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DK55_2354 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DK55_1268 glpX; fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D DK55_2792 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DK55_2747 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DK55_1760 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DK55_2954 gpm1; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DK55_2744 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DK55_1652 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DK55_1653 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DK55_1378 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:babo00910]
D DK55_2850 narK; nitrite transporter family protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D DK55_2851 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D DK55_2852 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D DK55_2854 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D DK55_2887 nirK; nitrite reductase, copper-containing K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D DK55_2897 norB; nitric oxide reductase subunit B K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D DK55_2898 norC; nitric oxide reductase subunit C K02305 norC; nitric oxide reductase subunit C
D DK55_2874 nosZ; nitrous-oxide reductase, TAT-dependent K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
D DK55_2394 nitronate monooxygenase family protein K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D DK55_1767 bacterial NAD-glutamate dehydrogenase family protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D DK55_240 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D DK55_1010 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_2457 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_2488 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_3158 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D DK55_3159 gltD; glutamate synthase, NADH/NADPH, small subunit domain protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D DK55_1775 carbonic anhydrase family protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D DK55_2436 carbonic anhydrase family protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:babo00920]
D DK55_1324 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D DK55_125 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DK55_1323 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D DK55_126 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D DK55_1322 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D DK55_127 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D DK55_128 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D DK55_3093 ABC transporter, substrate-binding , aliphatic sulfonates family protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DK55_2865 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DK55_3095 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein
D DK55_2864 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein
D DK55_3094 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D DK55_2863 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D DK55_207 cysC; adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D DK55_206 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DK55_208 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D DK55_197 cysH; phosophoadenylyl-sulfate reductase family protein K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D DK55_2222 flavodoxin family protein K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D DK55_196 nitrite and sulphite reductase 4Fe-4S domain protein K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D DK55_1059 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D DK55_1259 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DK55_1057 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D DK55_1904 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D DK55_2713 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D DK55_354 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D DK55_449 hypothetical protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D DK55_2429 hypothetical protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:babo00061]
D DK55_1964 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DK55_916 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DK55_915 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DK55_2038 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DK55_492 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D DK55_490 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D DK55_793 fabH; 3-oxoacyl-[acyl-carrier-] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DK55_2711 3-Oxoacyl-[acyl-carrier-(ACP)] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DK55_9 hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D DK55_493 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DK55_865 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DK55_866 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DK55_491 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_2448 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_3139 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_2782 3-beta hydroxysteroid dehydrogenase/isomerase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_2919 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_10 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D DK55_1157 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D DK55_456 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DK55_8 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DK55_340 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:babo00071]
D DK55_2749 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2430 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1726 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2431 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DK55_22 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2988 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2750 hypothetical protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D DK55_2427 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D DK55_1093 hypothetical protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D DK55_340 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DK55_2491 thcD; rhodocoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D DK55_147 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DK55_217 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DK55_1068 alcohol dehydrogenase GroES-like domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DK55_2487 iron-containing alcohol dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D DK55_864 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D DK55_216 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2920 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2543 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:babo00121]
D DK55_1449 linear amide C-N hydrolase, choloylglycine hydrolase family protein K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
D DK55_1586 short chain dehydrogenase family protein K00076 hdhA; 7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159]
D DK55_1585 hdhA; 7-alpha-hydroxysteroid dehydrogenase K00076 hdhA; 7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:babo00561]
D DK55_401 hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D DK55_216 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2920 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2543 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_1594 dak1 domain protein K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D DK55_1597 dak1 domain protein K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D DK55_1593 dhaL; dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D DK55_1596 dhaL; dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D DK55_792 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D DK55_2607 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D DK55_1930 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D DK55_1019 prokaryotic diacylglycerol kinase family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:babo00564]
D DK55_1833 ketopantoate reductase PanE/ApbA family protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D DK55_213 FAD binding domain protein K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D DK55_2607 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D DK55_1930 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D DK55_1019 prokaryotic diacylglycerol kinase family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D DK55_3154 alpha/beta hydrolase fold family protein K01048 pldB; lysophospholipase [EC:3.1.1.5]
D DK55_2061 putative phospholipid N-methyltransferase K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71]
D DK55_1161 cytidylyltransferase family protein K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D DK55_2636 pcs; phosphatidylcholine synthase K01004 pcs; phosphatidylcholine synthase [EC:2.7.8.24]
D DK55_479 pssA; CDP-diacylglycerol-serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D DK55_478 phosphatidylserine decarboxylase family protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D DK55_718 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D DK55_2962 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids [PATH:babo01040]
D DK55_103 GDSL-like Lipase/Acylhydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D DK55_1841 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D DK55_1487 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:babo00230]
D DK55_77 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D DK55_1506 prs; ribose-phosphate diphosphokinase family protein K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D DK55_481 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D DK55_451 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D DK55_729 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D DK55_851 purL; phosphoribosylformylglycinamidine synthase II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D DK55_855 purS; phosphoribosylformylglycinamidine synthase, purS protein K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D DK55_854 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D DK55_730 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D DK55_1706 purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D DK55_1705 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D DK55_856 purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D DK55_861 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D DK55_1765 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D DK55_1513 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D DK55_896 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D DK55_1503 multi-copper polyphenol oxidoreductase laccase family protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D DK55_1921 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D DK55_2807 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D DK55_714 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D DK55_190 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D DK55_1050 phosphoribosyl transferase domain protein K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D DK55_394 xdhA; xanthine dehydrogenase, small subunit K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4]
D DK55_395 xdhB; xanthine dehydrogenase, molybdopterin binding subunit K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4]
D DK55_2798 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D DK55_399 guaD; guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D DK55_496 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D DK55_2837 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D DK55_1048 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D DK55_2836 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D DK55_886 dgt; dGTPase family protein K01129 dgt; dGTPase [EC:3.1.5.1]
D DK55_686 hypothetical protein K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D DK55_673 rsh; GTP pyrophosphokinase rsh K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D DK55_770 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D DK55_2533 ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D DK55_1650 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D DK55_650 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D DK55_2559 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2]
D DK55_1685 ymdB-like family protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D DK55_743 AAA domain protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D DK55_1211 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D DK55_1072 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D DK55_207 cysC; adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D DK55_206 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DK55_538 uraH; hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D DK55_392 uraD; OHCU decarboxylase K16842 hpxB; allantoinase [EC:3.5.2.5]
D DK55_391 cupin domain protein K14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26]
D DK55_537 ureidoglycolate hydrolase family protein K01483 allA; ureidoglycolate lyase [EC:4.3.2.3]
D DK55_319 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D DK55_1349 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D DK55_318 ureB1; urease subunit beta 1 K01429 ureB; urease subunit beta [EC:3.5.1.5]
D DK55_1348 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D DK55_316 ureA1; urease subunit gamma 1 K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D DK55_1347 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00240 Pyrimidine metabolism [PATH:babo00240]
D DK55_1469 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D DK55_1465 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D DK55_2609 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D DK55_688 pyrC; dihydroorotase, multifunctional complex type domain protein K01465 URA4; dihydroorotase [EC:3.5.2.3]
D DK55_2608 pyrC; dihydroorotase, multifunctional complex type domain protein K01465 URA4; dihydroorotase [EC:3.5.2.3]
D DK55_360 pyrD; dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D DK55_674 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D DK55_2062 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D DK55_1164 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D DK55_714 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D DK55_1072 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D DK55_299 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D DK55_2002 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D DK55_1141 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D DK55_48 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D DK55_896 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D DK55_2969 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D DK55_1685 ymdB-like family protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D DK55_355 2'-deoxycytidine 5'-triphosphate deaminase family protein K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D DK55_2837 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D DK55_1048 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D DK55_2836 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D DK55_686 hypothetical protein K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D DK55_1000 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D DK55_1643 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D DK55_1385 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D DK55_334 FAD dependent oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D DK55_332 dihydroorotate dehydrogenase family domain protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D DK55_329 amidohydrolase family protein K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D DK55_330 amidase, hydantoinase/carbamoylase family protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:babo00250]
D DK55_1474 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D DK55_1897 asparaginase family protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D DK55_1899 asparaginase family protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D DK55_1895 fumarase C family protein K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D DK55_92 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D DK55_1917 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D DK55_1650 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D DK55_861 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D DK55_2609 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D DK55_2818 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D DK55_205 aminotransferase class-III family protein K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96]
D DK55_1612 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DK55_2976 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DK55_2779 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DK55_3158 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D DK55_3159 gltD; glutamate synthase, NADH/NADPH, small subunit domain protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D DK55_1767 bacterial NAD-glutamate dehydrogenase family protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D DK55_240 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D DK55_2497 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D DK55_1010 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_2457 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_2488 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_1469 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D DK55_1465 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D DK55_2816 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D DK55_854 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D DK55_2626 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DK55_2314 SIS domain protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DK55_481 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:babo00260]
D DK55_1817 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DK55_2341 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DK55_1269 ACT domain protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D DK55_508 thrB; homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D DK55_516 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D DK55_3157 psald; phenylserine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D DK55_782 aminotransferase class I and II family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DK55_28 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D DK55_401 hypothetical protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D DK55_2954 gpm1; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DK55_2744 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DK55_1652 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DK55_1653 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DK55_1378 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D DK55_367 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D DK55_2495 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D DK55_2493 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D DK55_1861 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2678 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1133 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2494 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D DK55_479 pssA; CDP-diacylglycerol-serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D DK55_579 FAD dependent oxidoreductase family protein K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D DK55_578 betB; betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D DK55_1443 putative Ring hydroxylating alpha subunit K00479 gbcA; glycine betaine monooxygenase A [EC:1.14.13.251]
D DK55_1444 2Fe-2S iron-sulfur cluster binding domain protein K21832 gbcB; glycine betaine monooxygenase B [EC:1.14.13.251]
D DK55_243 2Fe-2S iron-sulfur cluster binding domain protein K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1]
D DK55_244 pyridine nucleotide-disulfide oxidoreductase family protein K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1]
D DK55_245 aminomethyltransferase folate-binding domain protein K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1]
D DK55_241 sarcosine oxidase, beta subunit K00303 soxB; sarcosine oxidase, subunit beta [EC:1.5.3.24 1.5.3.1]
D DK55_247 sarcosine oxidase, gamma subunit K00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1]
D DK55_242 soxD; subunit delta of sarcosine oxidase K00304 soxD; sarcosine oxidase, subunit delta [EC:1.5.3.24 1.5.3.1]
D DK55_1178 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D DK55_1055 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D DK55_2039 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D DK55_2041 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:babo00270]
D DK55_1259 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DK55_1057 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D DK55_1904 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D DK55_759 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D DK55_203 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DK55_2090 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D DK55_2799 phosphorylase superfamily protein K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D DK55_1503 multi-copper polyphenol oxidoreductase laccase family protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D DK55_1901 cys/Met metabolism PLP-dependent enzyme family protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D DK55_2030 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D DK55_1817 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DK55_2341 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DK55_1269 ACT domain protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D DK55_2713 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D DK55_809 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D DK55_354 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D DK55_2547 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DK55_2462 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D DK55_2065 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D DK55_1474 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D DK55_1059 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D DK55_1869 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DK55_1178 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D DK55_2744 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DK55_1652 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DK55_1653 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:babo00280]
D DK55_2547 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DK55_2682 bkdA1; 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D DK55_2681 bkdA2; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D DK55_2985 dehydrogenase E1 component family protein K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D DK55_3141 hypothetical protein K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D DK55_2680 bkdB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D DK55_1861 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2678 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1133 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2750 hypothetical protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D DK55_2427 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D DK55_40 hypothetical protein K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D DK55_22 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2988 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2431 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DK55_1190 pccA; propionyl-CoA carboxylase, alpha subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D DK55_1189 pccB; propionyl-CoA carboxylase, beta subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D DK55_834 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D DK55_1191 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D DK55_956 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D DK55_1309 mmsB; 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D DK55_1778 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D DK55_216 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2920 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2543 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2301 beta-eliminating lyase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D DK55_38 D-ala D-ala ligase family protein K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D DK55_39 carboxyl transferase domain protein K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D DK55_36 enoyl-CoA hydratase/isomerase family protein K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D DK55_37 HMGL-like family protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D DK55_41 acetoacetate-CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D DK55_2749 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2430 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1726 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:babo00290]
D DK55_1055 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D DK55_1849 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D DK55_2345 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D DK55_2338 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D DK55_1376 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DK55_2282 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DK55_1375 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DK55_1369 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D DK55_117 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D DK55_2547 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DK55_699 putative 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D DK55_700 HMGL-like family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D DK55_1538 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D DK55_697 putative 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D DK55_698 putative 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:babo00300]
D DK55_1269 ACT domain protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D DK55_1817 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DK55_2341 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DK55_2772 dihydrodipicolinate synthetase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DK55_668 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DK55_2953 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D DK55_2933 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D DK55_350 argD; transaminase, acetylornithine/succinylornithine family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D DK55_2935 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D DK55_1872 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D DK55_1919 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D DK55_1420 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D DK55_1419 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:babo00310]
D DK55_2318 aldehyde dehydrogenase family protein K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase
D DK55_1865 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DK55_1861 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2678 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1133 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1093 hypothetical protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D DK55_22 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2988 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2431 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DK55_2749 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2430 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1726 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1612 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DK55_2976 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DK55_2779 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DK55_2910 diguanylate cyclase domain protein K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13]
D DK55_2319 hypothetical protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93]
D DK55_2214 coA-transferase III family protein K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-]
D DK55_2293 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DK55_2582 FAD dependent oxidoreductase family protein K26064 amaD; D-lysine oxidase
D DK55_2904 malate/L-lactate dehydrogenase family protein K13609 dpkA; delta1-piperideine-2-carboxylate reductase [EC:1.5.1.21]
D DK55_2321 FAD binding domain protein K26065 amaA; L-pipecolate oxidase
D DK55_216 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2920 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2543 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:babo00220]
D DK55_351 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D DK55_92 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D DK55_1917 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D DK55_2328 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
D DK55_319 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D DK55_1349 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D DK55_318 ureB1; urease subunit beta 1 K01429 ureB; urease subunit beta [EC:3.5.1.5]
D DK55_1348 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D DK55_316 ureA1; urease subunit gamma 1 K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D DK55_1347 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D DK55_2816 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D DK55_854 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D DK55_1010 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_2457 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_2488 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_1469 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D DK55_1465 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D DK55_1767 bacterial NAD-glutamate dehydrogenase family protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D DK55_240 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D DK55_1474 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D DK55_1881 argJ; glutamate N-acetyltransferase/amino-acid acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D DK55_2930 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D DK55_804 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D DK55_350 argD; transaminase, acetylornithine/succinylornithine family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:babo00330]
D DK55_2243 creatinine amidohydrolase family protein K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D DK55_1894 arginase family protein K01480 speB; agmatinase [EC:3.5.3.11]
D DK55_805 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D DK55_2096 hypothetical protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D DK55_380 nspC; carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96]
D DK55_216 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2920 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2543 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_3003 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DK55_3201 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DK55_2455 FAD binding domain protein K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D DK55_3078 aldehyde dehydrogenase family protein K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99]
D DK55_2328 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
D DK55_2443 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D DK55_2497 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D DK55_2329 acetohydroxy acid isomeroreductase, catalytic domain protein K01750 E4.3.1.12; ornithine cyclodeaminase [EC:4.3.1.12]
D DK55_1790 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D DK55_1789 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D DK55_363 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D DK55_1474 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D DK55_2293 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DK55_382 hypothetical protein K22548 lhpL; trans-L-3-hydroxyproline dehydratase [EC:4.2.1.77]
C 00340 Histidine metabolism [PATH:babo00340]
D DK55_2180 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D DK55_2179 tRNA synthetase class II core domain family protein K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D DK55_2020 hisE; phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D DK55_1081 phosphoribosyl-AMP cyclohydrolase family protein K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D DK55_2018 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D DK55_2017 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D DK55_2019 hisF; imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D DK55_2015 imidazoleglycerol-phosphate dehydratase family protein K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D DK55_1923 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DK55_660 aminotransferase class I and II family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DK55_3153 hisN; histidinol-phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
D DK55_303 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D DK55_2297 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D DK55_2295 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D DK55_2298 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D DK55_2299 hutF; formiminoglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D DK55_2296 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D DK55_216 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2920 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2543 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:babo00350]
D DK55_1474 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D DK55_1923 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DK55_660 aminotransferase class I and II family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DK55_147 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DK55_217 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DK55_1068 alcohol dehydrogenase GroES-like domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DK55_2487 iron-containing alcohol dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D DK55_864 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D DK55_3067 hpaE; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]
D DK55_3068 5-carboxymethyl-2-hydroxymuconate isomerase family protein K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
D DK55_3064 hpaH; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
D DK55_3063 hpaI; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D DK55_858 hpcH/HpaI aldolase/citrate lyase family protein K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D DK55_1612 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DK55_2976 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DK55_2779 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DK55_81 fumarylacetoacetate (FAA) hydrolase family protein K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
C 00360 Phenylalanine metabolism [PATH:babo00360]
D DK55_22 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2988 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_1905 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D DK55_2987 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D DK55_2213 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D DK55_1474 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D DK55_1923 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DK55_660 aminotransferase class I and II family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DK55_2303 ketopantoate reductase PanE/ApbA family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D DK55_2293 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DK55_3003 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DK55_3201 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DK55_2491 thcD; rhodocoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
C 00380 Tryptophan metabolism [PATH:babo00380]
D DK55_1865 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DK55_1861 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2678 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1133 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1093 hypothetical protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D DK55_22 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2988 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2431 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DK55_2749 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2430 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1726 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_216 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2920 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2543 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_3003 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DK55_3201 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DK55_2804 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:babo00400]
D DK55_1018 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DK55_1960 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D DK55_917 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D DK55_2003 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D DK55_1961 shikimate kinase family protein K00891 aroK; shikimate kinase [EC:2.7.1.71]
D DK55_47 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D DK55_463 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D DK55_1540 anthranilate synthase K13503 trpEG; anthranilate synthase [EC:4.1.3.27]
D DK55_1146 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D DK55_2042 N-(5'phosphoribosyl)anthranilate (PRA) isomerase family protein K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D DK55_1147 indole-3-glycerol phosphate synthase family protein K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D DK55_2039 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D DK55_2041 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D DK55_1772 chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5]
D DK55_1925 prephenate dehydrogenase family protein K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12]
D DK55_58 prephenate dehydratase family protein K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D DK55_1474 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D DK55_1923 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DK55_660 aminotransferase class I and II family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:babo00410]
D DK55_2818 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D DK55_216 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2920 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2543 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_376 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D DK55_334 FAD dependent oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D DK55_332 dihydroorotate dehydrogenase family domain protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D DK55_329 amidohydrolase family protein K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D DK55_330 amidase, hydantoinase/carbamoylase family protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D DK55_2301 beta-eliminating lyase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D DK55_22 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2988 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2431 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DK55_2750 hypothetical protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D DK55_1778 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:babo00430]
D DK55_2818 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D DK55_1767 bacterial NAD-glutamate dehydrogenase family protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D DK55_2792 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:babo00440]
D DK55_873 phnM; phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D DK55_1004 metallo-beta-lactamase superfamily protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:babo00450]
D DK55_759 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D DK55_203 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DK55_1901 cys/Met metabolism PLP-dependent enzyme family protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D DK55_939 sufS; cysteine desulfurase, SufS family protein K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D DK55_1478 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D DK55_207 cysC; adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D DK55_206 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DK55_1002 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:babo00460]
D DK55_1897 asparaginase family protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D DK55_1899 asparaginase family protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D DK55_782 aminotransferase class I and II family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:babo00470]
D DK55_2304 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D DK55_2293 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DK55_1267 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DK55_1412 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DK55_2816 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D DK55_854 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D DK55_1195 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D DK55_1417 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D DK55_1024 hypothetical protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D DK55_1872 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D DK55_1919 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D DK55_1743 prpA; 4-hydroxyproline epimerase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8]
D DK55_2905 dapA; dihydrodipicolinate synthase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22]
D DK55_2303 ketopantoate reductase PanE/ApbA family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:babo00480]
D DK55_1926 chaC-like family protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7]
D DK55_2537 hydantoinase/oxoprolinase family protein K01469 OPLAH; 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]
D DK55_2462 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D DK55_2065 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D DK55_709 hypothetical protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D DK55_19 hypothetical protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D DK55_644 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D DK55_2226 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DK55_722 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DK55_2946 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DK55_1473 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DK55_1017 gor; glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D DK55_1199 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D DK55_2106 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D DK55_2447 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D DK55_510 ahpC/TSA family protein K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
D DK55_2096 hypothetical protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:babo00540]
D DK55_1156 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D DK55_1408 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D DK55_1158 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D DK55_1155 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D DK55_1154 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D DK55_2206 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D DK55_3177 sugar isomerase, KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D DK55_1140 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D DK55_59 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D DK55_2205 3-Deoxy-D-manno-octulosonic-acid transferase family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D DK55_863 bacterial lipid A biosynthesis acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D DK55_1885 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D DK55_1886 sulfatase family protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:babo00541]
D DK55_3175 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DK55_1071 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DK55_2660 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D DK55_2372 3-beta hydroxysteroid dehydrogenase/isomerase family protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D DK55_2811 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D DK55_565 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D DK55_2810 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D DK55_566 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D DK55_552 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D DK55_551 perosamine synthetase K13010 per; perosamine synthetase [EC:2.6.1.102]
D DK55_547 formyl transferase family protein K00607 wbkC; GDP-perosamine N-formyltransferase [EC:2.1.2.14]
D DK55_2625 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:babo00550]
D DK55_305 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D DK55_1413 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D DK55_1414 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D DK55_1417 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D DK55_1420 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D DK55_1267 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DK55_1412 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DK55_1419 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D DK55_1162 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D DK55_2945 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D DK55_1418 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D DK55_1415 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D DK55_1729 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D DK55_135 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DK55_610 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DK55_923 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DK55_1421 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D DK55_999 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:babo00552]
D DK55_2945 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:babo00543]
D DK55_1259 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:babo00730]
D DK55_231 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D DK55_935 aminotransferase class-V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DK55_230 thiO; glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19]
D DK55_471 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D DK55_228 thiazole biosynthesis ThiG family protein K03149 thiG; thiazole synthase [EC:2.8.1.10]
D DK55_227 thiE; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D DK55_1672 thiamine monophosphate synthase/TENI family protein K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D DK55_1200 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D DK55_1715 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D DK55_743 AAA domain protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D DK55_1211 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D DK55_225 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:babo00740]
D DK55_464 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D DK55_784 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D DK55_786 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D DK55_2523 ribH2; 6,7-dimethyl-8-ribityllumazine synthase 2 K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D DK55_785 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D DK55_2188 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D DK55_2957 bluB; 5,6-dimethylbenzimidazole synthase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79]
D DK55_2857 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:babo00750]
D DK55_453 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D DK55_1776 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D DK55_1653 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DK55_704 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D DK55_1372 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D DK55_516 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:babo00760]
D DK55_130 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D DK55_896 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D DK55_1788 nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D DK55_1072 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D DK55_57 NUDIX domain protein K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D DK55_1020 nadE; NAD+ synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D DK55_1129 cinA; competence/damage-inducible protein CinA K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D DK55_1447 isochorismatase family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D DK55_943 ATP-NAD kinase family protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D DK55_2255 hypothetical protein K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D DK55_2256 hypothetical protein K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D DK55_2257 pntB; NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D DK55_1612 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DK55_2976 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DK55_2779 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:babo00770]
D DK55_1376 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DK55_2282 thiamine pyrophosphate enzyme, central domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DK55_1375 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DK55_1369 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D DK55_117 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D DK55_377 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D DK55_376 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D DK55_2021 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D DK55_2965 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D DK55_1072 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D DK55_1104 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D DK55_2004 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D DK55_680 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D DK55_2547 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DK55_334 FAD dependent oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D DK55_332 dihydroorotate dehydrogenase family domain protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D DK55_329 amidohydrolase family protein K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D DK55_330 amidase, hydantoinase/carbamoylase family protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D DK55_216 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2920 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2543 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:babo00780]
D DK55_9 hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D DK55_493 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DK55_865 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DK55_866 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DK55_491 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_2448 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_3139 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_2782 3-beta hydroxysteroid dehydrogenase/isomerase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_2919 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_1157 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D DK55_456 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DK55_8 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DK55_2708 aminotransferase class I and II family protein K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D DK55_2710 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D DK55_2709 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D DK55_2707 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D DK55_832 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:babo00785]
D DK55_2618 lipB; lipoyl(octanoyl) transferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D DK55_1132 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D DK55_1861 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2678 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1133 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1136 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D DK55_1135 hypothetical protein K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D DK55_3142 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DK55_1134 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DK55_1866 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D DK55_1865 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DK55_2682 bkdA1; 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D DK55_2681 bkdA2; 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D DK55_2985 dehydrogenase E1 component family protein K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D DK55_3141 hypothetical protein K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D DK55_2680 bkdB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D DK55_2495 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D DK55_2493 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D DK55_2494 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:babo00790]
D DK55_1080 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D DK55_1200 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D DK55_1035 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D DK55_1036 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D DK55_1034 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D DK55_1384 dihydrofolate reductase family protein K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D DK55_2037 folC; bifunctional FolC family protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D DK55_464 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D DK55_3184 pabB; aminodeoxychorismate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D DK55_3183 aminotransferase class IV family protein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D DK55_1909 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D DK55_99 putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D DK55_1910 queE; 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D DK55_1908 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D DK55_1185 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D DK55_961 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D DK55_1148 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D DK55_716 moaE family protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D DK55_2705 mog; molybdenum cofactor biosynthesis MOG K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D DK55_1149 hypothetical protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D DK55_960 mobA-like NTP transferase domain protein K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:babo00670]
D DK55_1384 dihydrofolate reductase family protein K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D DK55_2444 tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D DK55_782 aminotransferase class I and II family protein K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DK55_729 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D DK55_1765 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D DK55_2938 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D DK55_2493 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D DK55_203 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DK55_1385 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D DK55_2317 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D DK55_1433 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D DK55_1686 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:babo00860]
D DK55_367 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D DK55_1022 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DK55_1152 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DK55_3008 aminotransferase class-III family protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D DK55_777 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D DK55_1831 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D DK55_1830 uroporphyrinogen-III synthase HemD family protein K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D DK55_2000 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D DK55_1522 coproporphyrinogen III oxidase family protein K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D DK55_3107 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D DK55_676 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D DK55_1999 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D DK55_3180 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D DK55_194 cobA; uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D DK55_1293 cobA; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D DK55_501 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D DK55_803 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D DK55_1283 cobI; precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D DK55_1281 cobG; precorrin-3B synthase K02229 cobG; precorrin-3B synthase [EC:1.14.13.83]
D DK55_1297 cobalamin synthesis G family protein K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D DK55_1284 cobJ; precorrin-3B C17-methyltransferase K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131]
D DK55_1295 cobM; precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D DK55_1296 precorrin-6x reductase CbiJ/CobK family protein K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D DK55_1294 cbiD; cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D DK55_1280 cbiT; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D DK55_1282 precorrin-8X methylmutase family protein K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D DK55_1292 cobB; cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D DK55_1302 cobN; cobaltochelatase, CobN subunit K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2]
D DK55_1956 cobS; cobaltochelatase, CobS subunit K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2]
D DK55_1955 cobT; cobaltochelatase, CobT subunit K09883 cobT; cobaltochelatase CobT [EC:6.6.1.2]
D DK55_1288 flavin reductase like domain protein K13786 cobR; cob(II)yrinic acid a,c-diamide reductase [EC:1.16.8.-]
D DK55_1911 cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D DK55_1301 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D DK55_1307 cobQ; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D DK55_1289 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D DK55_1291 threonine-phosphate decarboxylase K02225 cobC1; cobalamin biosynthesis protein CobC
D DK55_1304 cobP; bifunctional adenosylcobalamin biosynthesis protein CobP K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D DK55_877 cobS; cobaltochelatase, CobS subunit K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D DK55_878 cobT; cobaltochelatase, CobT subunit K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D DK55_2644 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:babo00130]
D DK55_452 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D DK55_2858 ubiD; ubiD decarboxylase family protein K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D DK55_2857 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D DK55_1819 ubiG; 3-demethylubiquinone-9 3-O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D DK55_2635 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D DK55_1842 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D DK55_2967 ubiquinone/menaquinone biosynthesis methyltransferase family protein K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D DK55_3125 entC; isochorismate synthase entC K02361 entC; isochorismate synthase [EC:5.4.4.2]
D DK55_1053 wrbA; quinone oxidoreductase, type IV K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:babo00900]
D DK55_471 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D DK55_1128 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D DK55_433 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D DK55_1731 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D DK55_507 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D DK55_2749 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2430 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1726 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2857 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D DK55_1730 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D DK55_438 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D DK55_1162 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:babo00906]
D DK55_903 squalene/phytoene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D DK55_216 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2920 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2543 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:babo00907]
D DK55_22 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2988 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2431 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DK55_37 HMGL-like family protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D DK55_1689 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
D DK55_2372 3-beta hydroxysteroid dehydrogenase/isomerase family protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:babo01053]
D DK55_3125 entC; isochorismate synthase entC K02361 entC; isochorismate synthase [EC:5.4.4.2]
D DK55_3123 entB; isochorismatase K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D DK55_3122 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase K00216 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28]
D DK55_3120 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D DK55_3124 (2,3-dihydroxybenzoyl)adenylate synthase K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D DK55_3126 condensation domain protein K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72]
C 01055 Biosynthesis of vancomycin group antibiotics
D DK55_2372 3-beta hydroxysteroid dehydrogenase/isomerase family protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D DK55_2990 acyII; penicillin acylase 2 K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis [PATH:babo00332]
D DK55_1790 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D DK55_1789 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:babo00261]
D DK55_207 cysC; adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D DK55_206 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DK55_1817 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DK55_2341 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DK55_2772 dihydrodipicolinate synthetase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DK55_668 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DK55_2953 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:babo00521]
D DK55_2951 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DK55_77 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D DK55_2202 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D DK55_2501 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D DK55_1675 suhB; extragenic suppressor protein suhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D DK55_2507 idhA; inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D DK55_2372 3-beta hydroxysteroid dehydrogenase/isomerase family protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D DK55_2951 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis
D DK55_2372 3-beta hydroxysteroid dehydrogenase/isomerase family protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:babo00401]
D DK55_1925 prephenate dehydrogenase family protein K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12]
D DK55_1474 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D DK55_1923 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DK55_660 aminotransferase class I and II family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D DK55_1364 phenazine biosynthesis , PhzF family protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
C 00333 Prodigiosin biosynthesis
D DK55_490 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D DK55_491 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_2448 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_3139 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_2782 3-beta hydroxysteroid dehydrogenase/isomerase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_2919 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_456 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DK55_8 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D DK55_492 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:babo00999]
D DK55_2090 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D DK55_2003 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:babo00362]
D DK55_2569 pcaD; 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D DK55_2574 3-oxoacid CoA-transferase, A subunit K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
D DK55_2575 3-oxoacid CoA-transferase, B subunit K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
D DK55_2576 pcaF; 3-oxoadipyl-CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
D DK55_860 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D DK55_2566 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D DK55_2567 pcaH; protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
D DK55_2565 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D DK55_2568 pcaC; 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D DK55_2491 thcD; rhodocoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D DK55_1030 ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D DK55_2571 pobA; 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
D DK55_2431 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DK55_1093 hypothetical protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D DK55_22 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2988 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_1905 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D DK55_2987 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D DK55_2213 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D DK55_2749 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2430 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1726 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:babo00627]
D DK55_3003 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DK55_3201 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DK55_2857 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D DK55_412 acyl-CoA reductase family protein K21802 vdh; vanillin dehydrogenase [EC:1.2.1.67]
D DK55_22 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2988 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:babo00625]
D DK55_217 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DK55_1068 alcohol dehydrogenase GroES-like domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DK55_2487 iron-containing alcohol dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D DK55_864 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D DK55_147 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DK55_216 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2920 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_2543 aldA; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D DK55_523 HAD hydrolase, IA, variant 3 family protein K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D DK55_593 dehII; haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:babo00361]
D DK55_860 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D DK55_523 HAD hydrolase, IA, variant 3 family protein K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D DK55_593 dehII; haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00623 Toluene degradation
C 00622 Xylene degradation [PATH:babo00622]
D DK55_860 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00633 Nitrotoluene degradation [PATH:babo00633]
D DK55_2326 flavin oxidoreductase / NADH oxidase family protein K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:babo00643]
D DK55_3003 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DK55_3201 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D DK55_860 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D DK55_1981 coenzyme A transferase family protein K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
C 00791 Atrazine degradation
D DK55_319 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D DK55_1349 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D DK55_318 ureB1; urease subunit beta 1 K01429 ureB; urease subunit beta [EC:3.5.1.5]
D DK55_1348 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D DK55_316 ureA1; urease subunit gamma 1 K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D DK55_1347 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:babo00930]
D DK55_2989 hypothetical protein K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-]
D DK55_2211 hypothetical protein K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-]
D DK55_22 putative enoyl-CoA hydratase echA8 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2988 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D DK55_2431 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:babo00626]
D DK55_217 zinc-binding dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DK55_1068 alcohol dehydrogenase GroES-like domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D DK55_2487 iron-containing alcohol dehydrogenase family protein K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D DK55_864 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D DK55_147 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
D DK55_2566 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D DK55_2567 pcaH; protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:babo03020]
D DK55_1240 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D DK55_1239 DNA-directed RNA polymerase, beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D DK55_1208 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D DK55_672 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:babo03010]
D DK55_49 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D DK55_1166 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D DK55_1226 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D DK55_844 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D DK55_1215 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D DK55_489 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D DK55_1236 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D DK55_1218 ribosomal S8 family protein K02994 RP-S8; small subunit ribosomal protein S8
D DK55_806 ribosomal S9/S16 family protein K02996 RP-S9; small subunit ribosomal protein S9
D DK55_1233 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D DK55_1209 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D DK55_1237 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D DK55_1210 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D DK55_1219 ribosomal S14p/S29e family protein K02954 RP-S14; small subunit ribosomal protein S14
D DK55_4 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D DK55_1771 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D DK55_1223 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D DK55_488 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D DK55_1228 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D DK55_23 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D DK55_2263 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D DK55_1243 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D DK55_1229 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D DK55_1232 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D DK55_1231 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D DK55_1220 ribosomal L5 family protein K02931 RP-L5; large subunit ribosomal protein L5
D DK55_1217 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D DK55_1241 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D DK55_486 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D DK55_1242 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D DK55_1244 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D DK55_807 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D DK55_1222 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D DK55_1213 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D DK55_1225 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D DK55_1207 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D DK55_1216 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D DK55_1850 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D DK55_2054 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D DK55_1796 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D DK55_1227 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D DK55_1230 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D DK55_1221 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D DK55_1508 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25
D DK55_1795 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D DK55_1949 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D DK55_1224 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D DK55_1214 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D DK55_1679 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D DK55_1728 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D DK55_2599 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D DK55_2053 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D DK55_1707 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D DK55_1610 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DK55_1809 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DK55_3023 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DK55_1806 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DK55_3019 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DK55_1606 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DK55_1605 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DK55_1805 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DK55_3018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:babo00970]
D DK55_45 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DK55_1608 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DK55_1807 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DK55_3021 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DK55_1927 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DK55_323 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DK55_740 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DK55_968 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DK55_1971 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DK55_2585 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D DK55_2831 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DK55_816 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DK55_2592 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D DK55_542 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DK55_1584 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DK55_1623 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DK55_1273 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DK55_1274 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DK55_1249 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DK55_2923 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DK55_2332 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DK55_970 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DK55_1571 tRNA-His K14226 tRNA-His; tRNA His
D DK55_1609 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DK55_1808 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DK55_3022 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DK55_908 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DK55_1054 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DK55_1091 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DK55_1083 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DK55_1888 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DK55_2955 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DK55_1328 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DK55_2621 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DK55_1604 tRNA-Met K14230 tRNA-Met; tRNA Met
D DK55_3017 tRNA-Met K14230 tRNA-Met; tRNA Met
D DK55_1804 tRNA-Met K14230 tRNA-Met; tRNA Met
D DK55_1456 tRNA-Met K14230 tRNA-Met; tRNA Met
D DK55_1569 tRNA-Met K14230 tRNA-Met; tRNA Met
D DK55_297 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D DK55_797 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DK55_209 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DK55_738 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DK55_663 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DK55_1797 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DK55_2649 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DK55_2973 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DK55_307 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DK55_942 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DK55_2393 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DK55_1247 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D DK55_1250 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D DK55_815 tRNA-Val K14237 tRNA-Val; tRNA Val
D DK55_3150 tRNA-Val K14237 tRNA-Val; tRNA Val
D DK55_967 tRNA-Val K14237 tRNA-Val; tRNA Val
D DK55_1022 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DK55_1152 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DK55_2614 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D DK55_601 amidase family protein K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D DK55_910 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D DK55_2613 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D DK55_1201 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DK55_772 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DK55_440 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D DK55_442 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D DK55_1076 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DK55_895 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DK55_696 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DK55_1002 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DK55_2938 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D DK55_952 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DK55_1756 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DK55_2189 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DK55_2434 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D DK55_887 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DK55_836 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D DK55_2178 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DK55_2056 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DK55_2057 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DK55_931 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DK55_159 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:babo03060]
D DK55_1212 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D DK55_1246 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D DK55_1143 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D DK55_1318 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein
D DK55_901 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein
D DK55_900 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D DK55_2928 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DK55_1883 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DK55_2006 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D DK55_1773 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D DK55_1874 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D DK55_892 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D DK55_893 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D DK55_894 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D DK55_681 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D DK55_166 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:babo04122]
D DK55_935 aminotransferase class-V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DK55_1059 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D DK55_1966 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D DK55_1558 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D DK55_716 moaE family protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D DK55_961 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D DK55_717 moaD; molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein
D DK55_27 thiF family protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D DK55_1148 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D DK55_2705 mog; molybdenum cofactor biosynthesis MOG K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D DK55_229 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:babo03018]
D DK55_1782 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D DK55_921 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D DK55_1139 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DK55_5 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D DK55_1056 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D DK55_2603 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D DK55_141 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D DK55_1997 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D DK55_833 metallo-beta-lactamase superfamily protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D DK55_2059 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D DK55_2185 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DK55_1120 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D DK55_769 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D DK55_346 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D DK55_1526 poly A polymerase head domain protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:babo03030]
D DK55_2005 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_2586 exonuclease, DNA polymerase III, epsilon subunit family domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_2911 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_839 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DK55_55 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DK55_1001 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DK55_1989 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DK55_710 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DK55_25 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DK55_484 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D DK55_1462 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D DK55_1111 ssb4; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DK55_509 RNase H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D DK55_428 ribonuclease HII family protein K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D DK55_140 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DK55_1405 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:babo03410]
D DK55_181 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D DK55_524 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D DK55_21 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D DK55_1616 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D DK55_2176 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D DK55_670 uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D DK55_647 uracil-DNA glycosylase, 4 family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D DK55_883 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D DK55_1937 exodeoxyribonuclease III family protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D DK55_140 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DK55_1266 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DK55_1405 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:babo03420]
D DK55_2629 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D DK55_1114 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D DK55_1489 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D DK55_719 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D DK55_1398 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DK55_140 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DK55_1405 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:babo03430]
D DK55_164 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D DK55_2208 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL
D DK55_1398 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DK55_2461 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D DK55_466 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DK55_1266 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DK55_1111 ssb4; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DK55_839 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DK55_25 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DK55_55 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DK55_1989 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DK55_1001 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DK55_2005 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_2586 exonuclease, DNA polymerase III, epsilon subunit family domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_2911 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_710 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DK55_1405 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:babo03440]
D DK55_1266 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DK55_1111 ssb4; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DK55_26 recF; DNA replication and repair RecF family protein K03629 recF; DNA replication and repair protein RecF
D DK55_685 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D DK55_53 recR; recombination protein RecR K06187 recR; recombination protein RecR
D DK55_1202 recA; protein RecA K03553 recA; recombination protein RecA
D DK55_140 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DK55_1668 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D DK55_1667 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D DK55_1669 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D DK55_2627 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D DK55_839 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DK55_25 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DK55_55 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DK55_1989 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DK55_1001 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DK55_2005 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_2586 exonuclease, DNA polymerase III, epsilon subunit family domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_2911 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_710 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DK55_1753 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:babo02010]
D DK55_1324 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D DK55_125 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DK55_1323 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D DK55_126 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D DK55_1322 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D DK55_127 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D DK55_128 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D DK55_3093 ABC transporter, substrate-binding , aliphatic sulfonates family protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DK55_2865 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DK55_3095 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein
D DK55_2864 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein
D DK55_3094 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D DK55_2863 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D DK55_226 NMT1-like family protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D DK55_224 binding--dependent transport system inner membrane component family protein K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D DK55_3191 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D DK55_3192 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D DK55_3193 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D DK55_2498 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein
D DK55_2519 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein
D DK55_2499 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein
D DK55_2520 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein
D DK55_2500 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D DK55_2518 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D DK55_1716 thiB; thiamin/thiamine pyrophosphate ABC transporter, thiamin/thiamine pyrophospate-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D DK55_1717 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein
D DK55_1718 thiQ; thiamine ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D DK55_1578 bacterial extracellular solute-binding family protein K11073 potF; putrescine transport system substrate-binding protein
D DK55_1574 binding--dependent transport system inner membrane component family protein K11074 potI; putrescine transport system permease protein
D DK55_1576 putative spermidine/putrescine ABC transporter, permease component I protein K11075 potH; putrescine transport system permease protein
D DK55_1577 polyamine ABC transporter, ATP-binding family protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D DK55_3004 bacterial extracellular solute-binding family protein K11077 attC; mannopine transport system substrate-binding protein
D DK55_3005 binding--dependent transport system inner membrane component family protein K11078 attB; mannopine transport system permease protein
D DK55_3006 binding--dependent transport system inner membrane component family protein K11079 attA2; mannopine transport system permease protein
D DK55_3007 ABC transporter family protein K11080 attA1; mannopine transport system ATP-binding protein
D DK55_2484 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D DK55_1546 choX; choline ABC transporter, periplasmic binding family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D DK55_2483 binding--dependent transport system inner membrane component family protein K02001 proW; glycine betaine/proline transport system permease protein
D DK55_1547 choW; choline ABC transporter, permease protein K02001 proW; glycine betaine/proline transport system permease protein
D DK55_2482 proV; glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D DK55_1548 choV; choline ABC transporter, ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D DK55_238 substrate binding domain of ABC-type glycine betaine transport system family protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D DK55_235 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein
D DK55_237 putative osmoprotectant uptake system permease protein yehY K05846 opuBD; osmoprotectant transport system permease protein
D DK55_236 ABC transporter family protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D DK55_2844 ABC transporter family protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_2683 ABC transporter family protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_2477 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_3090 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_253 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_2529 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_2687 bacterial extracellular solute-binding family protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D DK55_2686 binding--dependent transport system inner membrane component family protein K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D DK55_2685 binding--dependent transport system inner membrane component family protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D DK55_2847 bacterial extracellular solute-binding family protein K10236 thuE; trehalose/maltose transport system substrate-binding protein
D DK55_2846 binding--dependent transport system inner membrane component family protein K10237 thuF; trehalose/maltose transport system permease protein
D DK55_2845 binding--dependent transport system inner membrane component family protein K10238 thuG; trehalose/maltose transport system permease protein
D DK55_2290 sbpA; multiple sugar-binding periplasmic protein sbpA K10546 chvE; putative multiple sugar transport system substrate-binding protein
D DK55_2292 branched-chain amino acid transport system / permease component family protein K10547 gguB; putative multiple sugar transport system permease protein
D DK55_2291 ABC transporter family protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_1027 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D DK55_1025 STAS domain protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D DK55_1026 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D DK55_3119 basic membrane family protein K07335 bmpA; basic membrane protein A and related proteins
D DK55_2642 basic membrane family protein K07335 bmpA; basic membrane protein A and related proteins
D DK55_3117 branched-chain amino acid transport system / permease component family protein K23535 nupB; general nucleoside transport system permease protein
D DK55_2640 branched-chain amino acid transport system / permease component family protein K23535 nupB; general nucleoside transport system permease protein
D DK55_3116 branched-chain amino acid transport system / permease component family protein K23536 nupC; general nucleoside transport system permease protein
D DK55_2641 branched-chain amino acid transport system / permease component family protein K23536 nupC; general nucleoside transport system permease protein
D DK55_3118 ABC transporter family protein K23537 nupA; general nucleoside transport system ATP-binding protein
D DK55_2639 ABC transporter family protein K23537 nupA; general nucleoside transport system ATP-binding protein
D DK55_2525 putative sugar-binding periplasmic protein K17315 gtsA; glucose/mannose transport system substrate-binding protein
D DK55_2526 binding--dependent transport system inner membrane component family protein K17316 gtsB; glucose/mannose transport system permease protein
D DK55_2528 binding--dependent transport system inner membrane component family protein K17317 gtsC; glucose/mannose transport system permease protein
D DK55_2232 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein
D DK55_2233 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein
D DK55_571 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein
D DK55_2235 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein
D DK55_2236 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein
D DK55_570 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein
D DK55_2234 ABC transporter family protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D DK55_569 ccmA; heme ABC exporter, ATP-binding protein CcmA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D DK55_3057 xylF; D-xylose ABC transporter, D-xylose-binding protein K10543 xylF; D-xylose transport system substrate-binding protein
D DK55_2883 periplasmic binding s and sugar binding domain of LacI family protein K10543 xylF; D-xylose transport system substrate-binding protein
D DK55_3059 branched-chain amino acid transport system / permease component family protein K10544 xylH; D-xylose transport system permease protein
D DK55_2881 branched-chain amino acid transport system / permease component family protein K10544 xylH; D-xylose transport system permease protein
D DK55_3058 xylG; D-xylose ABC transporter, ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D DK55_2882 ABC transporter family protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D DK55_2366 periplasmic binding s and sugar binding domain of LacI family protein K17202 eryG; erythritol transport system substrate-binding protein
D DK55_2365 branched-chain amino acid transport system / permease component family protein K17203 eryF; erythritol transport system permease protein
D DK55_2364 ccmA; heme ABC exporter, ATP-binding protein CcmA K17204 eryE; erythritol transport system ATP-binding protein
D DK55_1599 periplasmic binding s and sugar binding domain of LacI family protein K17205 xltC; putative xylitol transport system substrate-binding protein
D DK55_1600 branched-chain amino acid transport system / permease component family protein K17206 xltB; putative xylitol transport system permease protein
D DK55_1601 ABC transporter family protein K17207 xltA; putative xylitol transport system ATP-binding protein
D DK55_2557 bacterial extracellular solute-binding family protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D DK55_2556 binding--dependent transport system inner membrane component family protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D DK55_2555 binding--dependent transport system inner membrane component family protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D DK55_2554 ABC transporter family protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D DK55_2071 PBP superfamily domain protein K02040 pstS; phosphate transport system substrate-binding protein
D DK55_2072 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D DK55_2073 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D DK55_2074 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D DK55_762 bacterial extracellular solute-binding s, 3 family protein K09969 aapJ; general L-amino acid transport system substrate-binding protein
D DK55_2279 bacterial extracellular solute-binding s, 3 family protein K09969 aapJ; general L-amino acid transport system substrate-binding protein
D DK55_763 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09970 aapQ; general L-amino acid transport system permease protein
D DK55_765 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09971 aapM; general L-amino acid transport system permease protein
D DK55_1896 ABC transporter family protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D DK55_766 ABC transporter family protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D DK55_2536 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein
D DK55_2535 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10009 tcyB; L-cystine transport system permease protein
D DK55_2534 ABC transporter family protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D DK55_3080 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_1290 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_2274 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_3099 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_3133 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_35 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_1735 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_1737 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_2778 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_2786 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_2564 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_3081 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_2271 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_3101 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_3134 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_1742 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_2785 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_2563 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_3082 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_2784 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_1741 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_2270 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_3102 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_3135 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_2562 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_3136 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_2273 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_3103 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_1740 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_2561 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_1739 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_2783 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_3083 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_2272 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_3104 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_3137 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_2560 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_2268 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein
D DK55_12 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein
D DK55_2266 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein
D DK55_2267 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein
D DK55_2666 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D DK55_2667 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D DK55_2668 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein
D DK55_2669 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein
D DK55_2670 nikE; nickel import ATP-binding protein NikE K10823 oppF; oligopeptide transport system ATP-binding protein
D DK55_1553 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein
D DK55_1552 binding--dependent transport system inner membrane component family protein K12369 dppB; dipeptide transport system permease protein
D DK55_1551 binding--dependent transport system inner membrane component family protein K12370 dppC; dipeptide transport system permease protein
D DK55_1550 ABC transporter family protein K12371 dppD; dipeptide transport system ATP-binding protein
D DK55_1549 ABC transporter family protein K12372 dppF; dipeptide transport system ATP-binding protein
D DK55_2421 bacterial extracellular solute-binding s, 5 Middle family protein K15584 nikA; nickel transport system substrate-binding protein
D DK55_2422 bacterial extracellular solute-binding s, 5 Middle family protein K15584 nikA; nickel transport system substrate-binding protein
D DK55_2423 nikB; nickel ABC transporter, permease subunit NikB K15585 nikB; nickel transport system permease protein
D DK55_2424 nikC; nickel ABC transporter, permease subunit NikC K15586 nikC; nickel transport system permease protein
D DK55_2425 nikD; nickel import ATP-binding protein NikD K15587 nikD; nickel transport system ATP-binding protein [EC:7.2.2.11]
D DK55_2426 nikE; nickel import ATP-binding protein NikE K10824 nikE; nickel transport system ATP-binding protein [EC:7.2.2.11]
D DK55_32 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein
D DK55_33 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein
D DK55_31 binding--dependent transport system inner membrane component family protein K13894 yejB; microcin C transport system permease protein
D DK55_30 binding--dependent transport system inner membrane component family protein K13895 yejE; microcin C transport system permease protein
D DK55_29 nikE; nickel import ATP-binding protein NikE K13896 yejF; microcin C transport system ATP-binding protein
D DK55_3027 periplasmic solute binding family protein K09815 znuA; zinc transport system substrate-binding protein
D DK55_3029 ABC 3 transport family protein K09816 znuB; zinc transport system permease protein
D DK55_3028 ABC transporter family protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D DK55_1356 cobalt uptake substrate-specific transmembrane region family protein K02007 cbiM; cobalt/nickel transport system permease protein
D DK55_1358 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D DK55_1359 ABC transporter family protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D DK55_1355 hypothetical protein K10094 cbiK; nickel transport protein
D DK55_1357 putative cobalamin biosynthesis CbiM protein K16915 cbiL; nickel transport protein
D DK55_536 bioY family protein K03523 bioY; biotin transport system substrate-specific component
D DK55_1682 bioY family protein K03523 bioY; biotin transport system substrate-specific component
D DK55_550 ABC-2 type transporter family protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D DK55_549 ABC transporter family protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D DK55_837 liporeleasing system, transmembrane , LolC/E family protein K09808 lolC_E; lipoprotein-releasing system permease protein
D DK55_838 ABC transporter family protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D DK55_115 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D DK55_114 ccmC; heme exporter CcmC family protein K02195 ccmC; heme exporter protein C
D DK55_113 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D DK55_112 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D DK55_708 putative permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D DK55_707 putative permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D DK55_174 ABC transporter family protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D DK55_2871 ABC-2 transporter family protein K19341 nosY; Cu-processing system permease protein
D DK55_2872 ABC transporter family protein K19340 nosF; Cu-processing system ATP-binding protein
D DK55_1932 putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D DK55_1933 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D DK55_2952 ABC transporter family protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D DK55_477 ABC transporter family protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D DK55_1517 ABC transporter family protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D DK55_1518 ABC transporter family protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D DK55_2694 cydC; thiol reductant ABC exporter, CydC subunit K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D DK55_2695 cydD; thiol reductant ABC exporter, CydD subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D DK55_1641 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D DK55_1640 ftsX-like permease family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D DK55_1470 ABC transporter transmembrane region 2 family protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:babo02060]
D DK55_2029 phosphocarrier, HPr family protein K02784 ptsH; phosphocarrier protein HPr
D DK55_2028 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D DK55_1816 ptsP; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D DK55_177 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:babo03070]
D DK55_1318 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein
D DK55_901 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein
D DK55_1246 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D DK55_1143 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D DK55_1212 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D DK55_900 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D DK55_2928 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DK55_1883 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DK55_1874 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D DK55_2006 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D DK55_1773 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D DK55_892 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D DK55_893 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D DK55_894 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D DK55_3173 transglycosylase SLT domain protein K03194 virB1; type IV secretion system protein VirB1
D DK55_3172 trbC/VIRB2 family protein K03197 virB2; type IV secretion system protein VirB2
D DK55_3171 type IV secretory pathway, VirB3-like family protein K03198 virB3; type IV secretion system protein VirB3
D DK55_3169 virB5; P-type DNA transfer protein VirB5 K03200 virB5; type IV secretion system protein VirB5
D DK55_3167 putative traI protein K03202 virB7; type IV secretion system protein VirB7
D DK55_3165 virB9; P-type conjugative transfer protein VirB9 K03204 virB9; type IV secretion system protein VirB9
D DK55_3168 trbL/VirB6 plasmid conjugal transfer family protein K03201 virB6; type IV secretion system protein VirB6
D DK55_3166 virB8; type IV secretion system protein virB8 K03203 virB8; type IV secretion system protein VirB8
D DK55_3164 bacterial conjugation TrbI-like family protein K03195 virB10; type IV secretion system protein VirB10
D DK55_3170 ptlC; type IV secretion system protein ptlC K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D DK55_3163 virB11; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:babo02020]
D DK55_348 his Kinase A domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D DK55_2076 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D DK55_1200 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D DK55_2071 PBP superfamily domain protein K02040 pstS; phosphate transport system substrate-binding protein
D DK55_1497 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D DK55_1496 hypothetical protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D DK55_638 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107]
D DK55_1380 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107]
D DK55_2407 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D DK55_3054 fliC; flagellin K02406 fliC; flagellin
D DK55_2125 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D DK55_803 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D DK55_24 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D DK55_2623 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D DK55_2026 HAMP domain protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D DK55_2025 response regulator K14981 chvI; two-component system, OmpR family, response regulator ChvI
D DK55_2162 hpcH/HpaI aldolase/citrate lyase family protein K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D DK55_2346 hpcH/HpaI aldolase/citrate lyase family protein K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D DK55_387 bacterial regulatory s, luxR family protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D DK55_2851 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D DK55_2852 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D DK55_2854 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D DK55_2853 narJ; nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D DK55_161 glnD; protein-P-II uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D DK55_1011 glnB; nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D DK55_1126 his Kinase A domain protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D DK55_1125 ntrC; nitrogen regulation protein NR K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D DK55_1010 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_2457 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_2488 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_1124 sensory box protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D DK55_1123 bacterial regulatory , Fis family protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D DK55_2749 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2430 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1726 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_175 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D DK55_643 sensory box protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D DK55_2598 pleD; response regulator K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65]
D DK55_604 his Kinase A domain protein K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
D DK55_2597 divK; response regulator K11443 divK; two-component system, cell cycle response regulator DivK
D DK55_1044 sensory box protein K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D DK55_1564 hypothetical protein K13588 chpT; histidine phosphotransferase ChpT
D DK55_1565 ctrA; response regulator K13584 ctrA; two-component system, cell cycle response regulator CtrA
D DK55_3151 response regulator K13589 cpdR; two-component system, cell cycle response regulator CpdR
D DK55_2816 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D DK55_151 regB; sensor histidine kinase regB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D DK55_154 regA; photosynthetic apparatus regulatory protein regA K15012 regA; two-component system, response regulator RegA
D DK55_1516 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D DK55_1515 hypothetical protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D DK55_1514 cytochrome C1 family protein K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D DK55_60 cytochrome c family protein K08738 CYC; cytochrome c
D DK55_2166 cycA; D-serine/D-alanine/glycine transporter K08738 CYC; cytochrome c
D DK55_408 ccoN; cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D DK55_407 ccoO; cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D DK55_406 cbb3-type cytochrome oxidase component FixQ family protein K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D DK55_405 ccoP; cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D DK55_2693 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D DK55_2692 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D DK55_2691 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D DK55_800 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein
D DK55_2760 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein
D DK55_102 low molecular weight phosphotyrosine phosphatase family protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:babo04148]
D DK55_2328 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
D DK55_2096 hypothetical protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D DK55_1516 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:babo02024]
D DK55_1120 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D DK55_1018 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DK55_1364 phenazine biosynthesis , PhzF family protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
D DK55_2818 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D DK55_2817 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter
D DK55_2415 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D DK55_2829 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D DK55_2110 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D DK55_2418 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D DK55_2826 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D DK55_2108 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D DK55_2417 binding--dependent transport system inner membrane component family protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D DK55_2827 binding--dependent transport system inner membrane component family protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D DK55_2109 binding--dependent transport system inner membrane component family protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D DK55_2416 ABC transporter family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D DK55_2828 polyamine ABC transporter, ATP-binding family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D DK55_2107 polyamine ABC transporter, ATP-binding family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D DK55_3080 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_1290 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_2274 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_3099 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_3133 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_35 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_1735 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_1737 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_2778 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_2786 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_2564 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_3081 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_2271 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_3101 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_3134 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_1742 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_2785 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_2563 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_3082 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_2784 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_1741 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_2270 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_3102 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_3135 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_2562 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_3136 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_2273 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_3103 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_1740 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_2561 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_1739 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_2783 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_3083 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_2272 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_3104 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_3137 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_2560 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_1611 bacterial transcriptional regulator family protein K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor
D DK55_340 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DK55_3030 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D DK55_784 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D DK55_2666 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D DK55_2667 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D DK55_2668 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein
D DK55_2669 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein
D DK55_2670 nikE; nickel import ATP-binding protein NikE K10823 oppF; oligopeptide transport system ATP-binding protein
D DK55_2632 transmembrane protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DK55_2768 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DK55_2438 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DK55_2984 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DK55_2991 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DK55_2997 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DK55_2918 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DK55_2770 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DK55_2439 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DK55_2992 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DK55_2998 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DK55_2981 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DK55_2917 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DK55_2771 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DK55_2440 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DK55_2993 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DK55_2999 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DK55_2980 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DK55_2916 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DK55_2441 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DK55_3000 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DK55_2994 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DK55_2979 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DK55_2915 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DK55_2773 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DK55_2914 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DK55_2774 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DK55_2978 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DK55_2442 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DK55_2995 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DK55_3001 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DK55_2928 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DK55_1318 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein
D DK55_901 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein
D DK55_1246 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D DK55_1143 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D DK55_1212 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D DK55_900 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D DK55_1883 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DK55_1874 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D DK55_2006 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D DK55_1773 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:babo02030]
D DK55_2232 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein
D DK55_2233 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein
D DK55_571 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein
D DK55_1553 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein
D DK55_2124 putative surface presentation of antigens (SPOA) protein K02416 fliM; flagellar motor switch protein FliM
D DK55_2120 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D DK55_2125 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D DK55_3051 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB
D DK55_1677 ompA family protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:babo02040]
D DK55_2148 flagellar hook-basal body complex FliE family protein K02408 fliE; flagellar hook-basal body complex protein FliE
D DK55_3053 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D DK55_2128 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D DK55_2155 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL
D DK55_2124 putative surface presentation of antigens (SPOA) protein K02416 fliM; flagellar motor switch protein FliM
D DK55_2120 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D DK55_2156 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D DK55_3040 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D DK55_3036 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D DK55_3038 flhA; flagellar biosynthesis protein flhA K02400 flhA; flagellar biosynthesis protein FlhA
D DK55_2117 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D DK55_2150 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D DK55_2146 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D DK55_2147 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D DK55_3041 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D DK55_3046 flgE; flagellar hook protein flgE K02390 flgE; flagellar hook protein FlgE
D DK55_2127 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D DK55_2149 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D DK55_2154 flagellar L-ring family protein K02393 flgH; flagellar L-ring protein FlgH
D DK55_3034 rod binding family protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D DK55_3045 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D DK55_3044 hypothetical protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D DK55_3054 fliC; flagellin K02406 fliC; flagellin
D DK55_2125 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D DK55_3051 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB
D DK55_1677 ompA family protein K02557 motB; chemotaxis protein MotB
D DK55_3050 putative chemotaxis protein K10564 motC; chemotaxis protein MotC
D DK55_3049 flagellar hook-length control FliK family protein K10565 motD; chemotaxis protein MotD
D DK55_2536 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein
D DK55_1461 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D DK55_175 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D DK55_1139 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:babo04980]
D DK55_1911 cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D DK55_1191 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D DK55_203 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:babo01501]
D DK55_889 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D DK55_2666 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D DK55_2667 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D DK55_2668 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein
D DK55_2669 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein
D DK55_2670 nikE; nickel import ATP-binding protein NikE K10823 oppF; oligopeptide transport system ATP-binding protein
D DK55_342 bepD; efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_1098 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_2821 bepF; efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_1097 acrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump
D DK55_343 bepE; efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D DK55_135 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DK55_610 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DK55_923 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DK55_1421 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:babo01502]
D DK55_1267 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DK55_1412 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DK55_2304 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D DK55_1419 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D DK55_1418 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D DK55_1415 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:babo01503]
D DK55_1885 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D DK55_1886 sulfatase family protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D DK55_922 amiB; N-acetylmuramoyl-l-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DK55_638 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107]
D DK55_1380 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107]
D DK55_342 bepD; efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_1098 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_2821 bepF; efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_1097 acrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump
D DK55_343 bepE; efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D DK55_1156 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D DK55_2623 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:babo01000]
C 01001 Protein kinases [BR:babo01001]
D DK55_2761 chain length determinant family protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D DK55_348 his Kinase A domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D DK55_1497 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D DK55_2026 HAMP domain protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D DK55_2217 HAMP domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D DK55_386 histidine kinase family protein K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D DK55_1126 his Kinase A domain protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D DK55_1124 sensory box protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D DK55_643 sensory box protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D DK55_604 his Kinase A domain protein K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
D DK55_1044 sensory box protein K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D DK55_151 regB; sensor histidine kinase regB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:babo01009]
D DK55_2030 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D DK55_1378 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:babo01002]
D DK55_166 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D DK55_2798 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D DK55_2248 peptidase C26 family protein K07010 K07010; putative glutamine amidotransferase
D DK55_481 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D DK55_3158 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D DK55_2626 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DK55_2314 SIS domain protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DK55_1197 intracellular protease, PfpI family protein K05520 yhbO; deglycase [EC:3.5.1.124]
D DK55_1449 linear amide C-N hydrolase, choloylglycine hydrolase family protein K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
D DK55_781 L,D-transpeptidase catalytic domain protein K21470 ycbB; L,D-transpeptidase YcbB
D DK55_644 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D DK55_2349 peptidase M3 family protein K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D DK55_3185 oligoendopeptidase, pepF/M3 family protein K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D DK55_2198 peptidase M16 inactive domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D DK55_709 hypothetical protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D DK55_19 hypothetical protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D DK55_2558 dipeptidase AC, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D DK55_2935 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D DK55_1277 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D DK55_1404 metallopeptidase M24 family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D DK55_2079 thermophilic metalloprotease family protein K19689 ampS; aminopeptidase [EC:3.4.11.-]
D DK55_1657 hflB; ATP-dependent metallopeptidase HflB family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D DK55_1762 peptidase M48 family protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D DK55_1160 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D DK55_2949 penicillin-insensitive murein endopeptidase family protein K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D DK55_2280 dap; D-aminopeptidase K01266 dmpA; D-aminopeptidase [EC:3.4.11.19]
D DK55_2675 peptidase S58 family protein K01266 dmpA; D-aminopeptidase [EC:3.4.11.19]
D DK55_638 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107]
D DK55_1380 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107]
D DK55_596 prolyl oligopeptidase family protein K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D DK55_999 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D DK55_1118 clp protease family protein K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D DK55_1116 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D DK55_1151 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D DK55_681 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D DK55_363 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D DK55_1783 hypothetical protein K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D DK55_2990 acyII; penicillin acylase 2 K01434 pac; penicillin G amidase [EC:3.5.1.11]
D DK55_171 sppA; signal peptide peptidase SppA, 36K type K04773 sppA; protease IV [EC:3.4.21.-]
D DK55_615 phage prohead protease, HK97 family K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D DK55_2014 hslV; ATP-dependent protease HslVU, peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D DK55_2862 peptidase U32 family protein K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D DK55_2861 peptidase U32 family protein K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D DK55_2201 modulator of DNA gyrase family protein K03592 pmbA; PmbA protein
D DK55_497 modulator of DNA gyrase family protein K03568 tldD; TldD protein
D DK55_1382 hflC; HflC protein K04087 hflC; modulator of FtsH protease HflC
D DK55_1383 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:babo01003]
D DK55_1729 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D DK55_135 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DK55_610 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DK55_923 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DK55_129 hypothetical protein K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:babo01005]
D DK55_1156 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D DK55_1154 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D DK55_1408 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D DK55_1158 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D DK55_1155 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D DK55_2206 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D DK55_863 bacterial lipid A biosynthesis acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D DK55_2205 3-Deoxy-D-manno-octulosonic-acid transferase family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D DK55_1885 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D DK55_1886 sulfatase family protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D DK55_1140 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D DK55_59 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D DK55_3177 sugar isomerase, KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D DK55_1481 glycosyl transferases group 1 family protein K12989 lpcC; mannosyltransferase [EC:2.4.1.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:babo01011]
D DK55_305 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D DK55_1413 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D DK55_1414 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D DK55_1417 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D DK55_1420 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D DK55_1267 ddlA; D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DK55_1412 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DK55_2304 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D DK55_1195 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D DK55_1418 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D DK55_1415 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D DK55_2945 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D DK55_160 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D DK55_135 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DK55_610 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DK55_923 penicillin-binding , 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DK55_1421 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D DK55_999 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D DK55_1729 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D DK55_781 L,D-transpeptidase catalytic domain protein K21470 ycbB; L,D-transpeptidase YcbB
D DK55_2949 penicillin-insensitive murein endopeptidase family protein K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D DK55_667 transglycosylase SLT domain protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D DK55_2009 mltA; membrane-bound lytic murein transglycosylase K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D DK55_3174 lytic murein transglycosylase family protein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D DK55_494 yceG-like family protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D DK55_998 rlpA; rare lipoA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D DK55_2069 rlpA; rare lipoA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D DK55_922 amiB; N-acetylmuramoyl-l-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:babo01004]
D DK55_490 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D DK55_793 fabH; 3-oxoacyl-[acyl-carrier-] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DK55_2711 3-Oxoacyl-[acyl-carrier-(ACP)] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DK55_9 hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D DK55_493 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DK55_865 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DK55_866 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DK55_491 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_2448 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_3139 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_2782 3-beta hydroxysteroid dehydrogenase/isomerase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_2919 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DK55_10 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D DK55_1157 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D DK55_456 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DK55_8 short chain dehydrogenase family protein K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DK55_103 GDSL-like Lipase/Acylhydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D DK55_1841 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D DK55_1487 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D DK55_2747 AMP-binding enzyme family protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DK55_1760 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DK55_1693 AMP-binding enzyme family protein K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D DK55_41 acetoacetate-CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D DK55_340 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DK55_792 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D DK55_2607 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D DK55_1930 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:babo01008]
D DK55_3123 entB; isochorismatase K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D DK55_3120 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D DK55_3124 (2,3-dihydroxybenzoyl)adenylate synthase K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D DK55_3126 condensation domain protein K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72]
C 01006 Prenyltransferases [BR:babo01006]
D DK55_1730 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D DK55_438 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D DK55_1162 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D DK55_903 squalene/phytoene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D DK55_1377 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D DK55_452 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D DK55_501 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:babo01007]
D DK55_2434 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D DK55_1022 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DK55_1152 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DK55_1617 tRNA synthetases class I (E and Q), catalytic domain protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D DK55_931 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DK55_159 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D DK55_696 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DK55_887 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DK55_1002 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DK55_2189 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DK55_952 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DK55_1756 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DK55_772 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DK55_2178 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DK55_440 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D DK55_442 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D DK55_895 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DK55_836 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D DK55_1076 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DK55_1201 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DK55_2056 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DK55_2057 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DK55_1474 beta-eliminating lyase family protein K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D DK55_1270 aminotransferase class I and II family protein K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D DK55_1923 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DK55_660 aminotransferase class I and II family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DK55_367 hemA; 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D DK55_2708 aminotransferase class I and II family protein K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D DK55_2301 beta-eliminating lyase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D DK55_350 argD; transaminase, acetylornithine/succinylornithine family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D DK55_2710 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D DK55_3008 aminotransferase class-III family protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D DK55_2293 aminotransferase class IV family protein K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DK55_2547 aminotransferase class IV family protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DK55_1653 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DK55_551 perosamine synthetase K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:babo00194]
D DK55_1747 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D DK55_1748 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D DK55_1749 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D DK55_1750 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D DK55_1751 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D DK55_426 plant ATP synthase F0 family protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D DK55_427 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D DK55_425 ATP synthase subunit C family protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D DK55_424 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D DK55_423 F0F1-ATPase subunit family protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:babo03000]
D DK55_2572 helix-turn-helix domain protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D DK55_413 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D DK55_2339 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D DK55_2320 bacterial regulatory helix-turn-helix , lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DK55_2570 pcaQ; pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D DK55_2509 bacterial regulatory helix-turn-helix , lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D DK55_2805 bacterial regulatory helix-turn-helix , lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D DK55_2428 lysR substrate binding domain protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D DK55_212 deoR-like helix-turn-helix domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D DK55_219 periplasmic binding s and sugar binding domain of LacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DK55_2848 periplasmic binding s and sugar binding domain of LacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DK55_576 periplasmic binding s and sugar binding domain of LacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DK55_2884 bacterial regulatory s, lacI family protein K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D DK55_1109 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D DK55_2300 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D DK55_2690 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D DK55_2313 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D DK55_3086 UTRA domain protein K03710 K03710; GntR family transcriptional regulator
D DK55_2169 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DK55_580 betI; transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D DK55_341 bepR; HTH-type transcriptional repressor BepR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D DK55_331 bacterial regulatory s, tetR family protein K09017 rutR; TetR/AcrR family transcriptional regulator
D DK55_2736 bacterial regulatory s, tetR family protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D DK55_2496 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DK55_1541 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DK55_879 asnC family protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D DK55_1644 asnC family protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D DK55_2452 asnC family protein K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
D DK55_2116 vjbR; HTH-type quorum sensing-dependent transcriptional regulator vjbR K21697 vjbR; LuxR family transcriptional regulator, quorum-sensing system regulator VjbR
D DK55_2464 marR family protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D DK55_1746 marR family protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D DK55_2727 iclR helix-turn-helix domain protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D DK55_2342 ohrR; transcriptional regulator OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D DK55_233 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D DK55_1624 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D DK55_3030 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D DK55_11 ferric uptake regulator family protein K09826 irr; Fur family transcriptional regulator, iron response regulator
D DK55_2573 beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D DK55_1611 bacterial transcriptional regulator family protein K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor
D DK55_675 aadR; transcriptional activatory protein AadR K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D DK55_2849 cyclic nucleotide-binding domain protein K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB
D DK55_2868 cyclic nucleotide-binding domain protein K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
D DK55_2885 cyclic nucleotide-binding domain protein K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
D DK55_2647 Rrf2 family protein K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator
D DK55_1188 helix-turn-helix family protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D DK55_1579 hypothetical protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D DK55_832 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D DK55_2420 nikR; nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D DK55_2497 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D DK55_2875 4Fe-4S binding domain protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D DK55_148 frmR; transcriptional repressor frmR K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D DK55_1958 bolA-like family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D DK55_1990 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DK55_3110 repB; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DK55_1722 carD-like/TRCF domain protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D DK55_186 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D DK55_225 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D DK55_2595 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase
D DK55_512 hypothetical protein K07735 algH; putative transcriptional regulator
D DK55_1041 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D DK55_783 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D DK55_882 sel1 repeat family protein K25885 exoR; exopolysaccharide production negative regulator
C 03021 Transcription machinery [BR:babo03021]
D DK55_1208 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D DK55_1240 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D DK55_1239 DNA-directed RNA polymerase, beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D DK55_672 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D DK55_1461 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D DK55_1629 RNA polymerase sigma factor, sigma-70 family protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D DK55_3130 RNA polymerase sigma factor, sigma-70 family protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D DK55_1620 rpoH; alternative sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D DK55_1721 RNA polymerase sigma factor, sigma-70 family protein K03089 rpoH; RNA polymerase sigma-32 factor
D DK55_175 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D DK55_2093 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D DK55_787 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D DK55_1245 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D DK55_1041 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D DK55_1482 greA; transcription elongation factor GreA domain protein K03624 greA; transcription elongation factor GreA
D DK55_1997 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:babo03019]
D DK55_921 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D DK55_682 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D DK55_833 metallo-beta-lactamase superfamily protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D DK55_2603 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D DK55_1056 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D DK55_141 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D DK55_1139 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DK55_5 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D DK55_1997 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D DK55_2059 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D DK55_2185 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DK55_1120 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D DK55_769 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D DK55_346 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D DK55_1526 poly A polymerase head domain protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D DK55_1782 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D DK55_149 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:babo03011]
D DK55_49 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D DK55_1166 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D DK55_1226 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D DK55_844 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D DK55_1215 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D DK55_489 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D DK55_1236 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D DK55_1218 ribosomal S8 family protein K02994 RP-S8; small subunit ribosomal protein S8
D DK55_806 ribosomal S9/S16 family protein K02996 RP-S9; small subunit ribosomal protein S9
D DK55_1233 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D DK55_1209 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D DK55_1237 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D DK55_1210 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D DK55_1219 ribosomal S14p/S29e family protein K02954 RP-S14; small subunit ribosomal protein S14
D DK55_4 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D DK55_1771 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D DK55_1223 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D DK55_488 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D DK55_1228 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D DK55_23 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D DK55_2263 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D DK55_1243 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D DK55_1229 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D DK55_1232 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D DK55_1231 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D DK55_1220 ribosomal L5 family protein K02931 RP-L5; large subunit ribosomal protein L5
D DK55_1217 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D DK55_486 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D DK55_1242 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D DK55_1244 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D DK55_1241 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D DK55_807 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D DK55_1222 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D DK55_1213 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D DK55_1225 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D DK55_1207 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D DK55_1216 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D DK55_1850 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D DK55_2054 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D DK55_1796 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D DK55_1227 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D DK55_1230 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D DK55_1221 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D DK55_1795 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D DK55_1949 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D DK55_1224 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D DK55_1214 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D DK55_1679 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D DK55_1728 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D DK55_2599 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D DK55_2053 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D DK55_1707 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D DK55_1508 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25
D DK55_1605 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DK55_1805 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DK55_3018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DK55_1610 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DK55_1809 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DK55_3023 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DK55_1806 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DK55_3019 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DK55_1606 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:babo03009]
D DK55_682 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D DK55_683 era; GTP-binding protein Era K03595 era; GTPase
D DK55_1791 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D DK55_1041 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D DK55_2093 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D DK55_787 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D DK55_1245 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D DK55_703 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D DK55_1763 nusB family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D DK55_2801 ubiE/COQ5 methyltransferase family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D DK55_6 methyltransferase small domain protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D DK55_2194 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D DK55_2463 RNA methyltransferase, RsmE family protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D DK55_1992 gidB; 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D DK55_1423 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D DK55_192 tetrapyrrole (Corrin/Porphyrin) Methylases family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D DK55_472 hemolysin TlyA family protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D DK55_1251 RNA 2'-O ribose methyltransferase substrate binding family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D DK55_2532 ftsJ-like methyltransferase family protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D DK55_1786 putative SPOUT methyltransferase family protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D DK55_168 SAM dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D DK55_725 ribosomal RNA small subunit methyltransferase D, RsmJ family protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D DK55_95 rlmN; 23S rRNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D DK55_473 methyltransferase small domain protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D DK55_2193 pseudouridine synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D DK55_1006 pseudouridine synthase, RluA family protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D DK55_1621 pseudouridine synthase, RluA family protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D DK55_2082 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D DK55_514 acetyltransferase family protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D DK55_1858 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D DK55_2643 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D DK55_1402 ribosomal L11 methyltransferase family protein K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D DK55_921 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D DK55_2610 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D DK55_141 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D DK55_420 engA; ribosome-associated GTPase EngA K03977 engA; GTPase
D DK55_1119 hflX; GTP-binding protein HflX K03665 hflX; GTPase
D DK55_443 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D DK55_673 rsh; GTP pyrophosphokinase rsh K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D DK55_2 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D DK55_2092 hypothetical protein K09748 rimP; ribosome maturation factor RimP
D DK55_1787 oligomerization domain protein K09710 ybeB; ribosome-associated protein
D DK55_2086 putative rRNA maturation factor YbeY K07042 ybeY; probable rRNA maturation factor
D DK55_176 raiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D DK55_1510 50S ribosome-binding GTPase family protein K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:babo03016]
D DK55_723 ribonuclease T2 family protein K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D DK55_1022 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DK55_1152 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DK55_836 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D DK55_2189 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DK55_1756 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DK55_1002 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DK55_887 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DK55_772 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DK55_1201 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DK55_1076 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DK55_895 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DK55_696 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DK55_952 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DK55_2178 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DK55_2056 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DK55_2057 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DK55_931 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DK55_159 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D DK55_1058 threonyl and Alanyl tRNA synthetase second additional domain protein K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
D DK55_1172 hit-like protein involved in cell-cycle regulation K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D DK55_2091 methyltransferase family protein K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D DK55_2937 truA; tRNA pseudouridine(38-40) synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D DK55_3 truB; tRNA pseudouridine(55) synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D DK55_935 aminotransferase class-V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DK55_443 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D DK55_1377 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D DK55_1994 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D DK55_1993 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D DK55_208 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D DK55_2927 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D DK55_187 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D DK55_771 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D DK55_138 3'-5' exonuclease family protein K03684 rnd; ribonuclease D [EC:3.1.13.5]
D DK55_101 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D DK55_2434 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D DK55_440 glyQ; glycine--tRNA ligase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D DK55_442 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D DK55_1617 tRNA synthetases class I (E and Q), catalytic domain protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D DK55_2333 DNA-binding protein, putative K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D DK55_2192 codA; cytidine and deoxycytidylate deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D DK55_876 dusA; tRNA dihydrouridine synthase A family protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D DK55_2084 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D DK55_1873 radical SAM methylthiotransferase, MiaB/RimO family protein K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D DK55_1196 RNA methyltransferase, TrmH , group 1 family protein K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D DK55_904 trmFO; m(5)U-54 methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D DK55_1857 trmD; tRNA (guanine(37)-N(1))-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D DK55_1519 spoU rRNA Methylase family protein K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D DK55_167 RNA 2'-O ribose methyltransferase substrate binding family protein K03437 spoU; RNA methyltransferase, TrmH family
D DK55_1558 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D DK55_845 PP-loop family protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D DK55_1966 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D DK55_945 sufA; FeS assembly scaffold SufA K13628 iscA; iron-sulfur cluster assembly protein
D DK55_687 aminomethyltransferase folate-binding domain protein K06980 ygfZ; tRNA-modifying protein YgfZ
D DK55_1101 queA; tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D DK55_1908 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D DK55_1909 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D DK55_1910 queE; 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D DK55_1185 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D DK55_2947 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D DK55_984 tRNA-guanine transglycosylase family protein K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D DK55_1100 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D DK55_1658 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D DK55_2081 yeaZ; tRNA threonylcarbamoyl adenosine modification protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D DK55_1832 tRNA threonylcarbamoyl adenosine modification protein YgjD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D DK55_2603 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D DK55_5 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:babo03012]
D DK55_1 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D DK55_2051 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D DK55_712 ABC transporter family protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D DK55_1165 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D DK55_1234 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D DK55_1248 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D DK55_1235 fusA; translation elongation factor G K02355 fusA; elongation factor G
D DK55_1815 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D DK55_1163 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D DK55_1814 prmC; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D DK55_1509 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D DK55_300 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D DK55_1674 efp; translation elongation factor P K02356 efp; elongation factor P
D DK55_924 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D DK55_2964 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D DK55_2022 RF-1 domain protein K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:babo03110]
D DK55_1173 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D DK55_1812 clpB; ATP-dependent chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D DK55_1117 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D DK55_2013 hslU; ATP-dependent protease HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D DK55_2059 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D DK55_421 hsp70 family protein K04046 yegD; hypothetical chaperone protein
D DK55_2185 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DK55_2060 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D DK55_1428 dnaJ domain protein K05801 djlA; DnaJ like chaperone protein
D DK55_352 hsp33 family protein K04083 hslO; molecular chaperone Hsp33
D DK55_185 grpE family protein K03687 GRPE; molecular chaperone GrpE
D DK55_3156 hsp20/alpha crystallin family protein K04080 ibpA; molecular chaperone IbpA
D DK55_1724 S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D DK55_2186 chaperonin 10 Kd subunit K04078 groES; chaperonin GroES
D DK55_638 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107]
D DK55_1380 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107]
D DK55_1657 hflB; ATP-dependent metallopeptidase HflB family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D DK55_424 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D DK55_2006 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D DK55_2815 hdeA; chaperone-like protein hdeA K19777 hdeA; acid stress chaperone HdeA
D DK55_73 hypothetical protein K09796 pccA; periplasmic copper chaperone A
D DK55_1145 PPIC-type PPIASE domain protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D DK55_1882 PPIC-type PPIASE domain protein K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D DK55_2855 PPIC-type PPIASE domain protein K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D DK55_705 hypothetical protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D DK55_2036 trxA; thioredoxin K03671 TXN; thioredoxin
D DK55_2334 trxA; thioredoxin K05838 ybbN; putative thioredoxin
D DK55_1822 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3
D DK55_849 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin
D DK55_116 cycY; disulfide interchange protein CycY K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:babo04131]
D DK55_714 nucleoside diphosphate kinase family protein K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D DK55_1690 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DK55_2954 gpm1; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DK55_1709 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DK55_1766 major Facilitator Superfamily protein K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:babo03032]
D DK55_509 RNase H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D DK55_1115 hupB; DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta
D DK55_794 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D DK55_170 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D DK55_24 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D DK55_484 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D DK55_1462 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D DK55_3111 hypothetical protein K18996 repC; replication initiation protein RepC
D DK55_1111 ssb4; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DK55_839 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DK55_25 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DK55_710 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DK55_1989 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DK55_1001 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DK55_2005 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_2586 exonuclease, DNA polymerase III, epsilon subunit family domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_2911 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_55 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DK55_428 ribonuclease HII family protein K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D DK55_140 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DK55_1405 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DK55_1106 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D DK55_142 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D DK55_774 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D DK55_2616 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D DK55_2604 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:babo03036]
D DK55_682 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D DK55_1115 hupB; DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta
D DK55_794 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D DK55_170 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D DK55_24 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D DK55_2634 hemimethylated DNA binding domain protein K11940 hspQ; heat shock protein HspQ
D DK55_2080 dps; DNA protection during starvation protein K04047 dps; starvation-inducible DNA-binding protein
D DK55_1120 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D DK55_2496 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DK55_1541 asnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DK55_528 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D DK55_890 scpA/B family protein K05896 scpA; segregation and condensation protein A
D DK55_891 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D DK55_1410 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D DK55_1933 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D DK55_1421 penicillin binding transpeptidase domain protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D DK55_1839 ftsK/SpoIIIE family protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D DK55_2676 ftsK/SpoIIIE family protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D DK55_1422 hypothetical protein K03586 ftsL; cell division protein FtsL
D DK55_1411 cell division FtsQ family protein K03589 ftsQ; cell division protein FtsQ
D DK55_1416 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D DK55_1932 putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D DK55_1409 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D DK55_1687 cell division ZapA family protein K09888 zapA; cell division protein ZapA
D DK55_1870 AFG1-like ATPase family protein K06916 zapE; cell division protein ZapE
D DK55_922 amiB; N-acetylmuramoyl-l-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DK55_342 bepD; efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_1098 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_2821 bepF; efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_2835 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D DK55_2834 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D DK55_2833 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D DK55_1991 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03496 parA; chromosome partitioning protein
D DK55_3109 repA; plasmid partitioning protein RepA K03496 parA; chromosome partitioning protein
D DK55_1990 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DK55_3110 repB; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DK55_774 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D DK55_2616 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D DK55_1993 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D DK55_1992 gidB; 16S rRNA (guanine(527)-N(7))-methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D DK55_904 trmFO; m(5)U-54 methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D DK55_1859 phage integrase family protein K03733 xerC; integrase/recombinase XerC
D DK55_1963 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D DK55_76 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D DK55_2929 ysxC; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:babo03400]
D DK55_200 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D DK55_524 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D DK55_181 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D DK55_1879 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D DK55_1643 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D DK55_413 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D DK55_2339 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D DK55_2671 alkB; alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
D DK55_670 uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D DK55_647 uracil-DNA glycosylase, 4 family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D DK55_1616 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D DK55_2176 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D DK55_21 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D DK55_883 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D DK55_1937 exodeoxyribonuclease III family protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D DK55_1266 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DK55_1405 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DK55_140 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DK55_1114 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D DK55_1489 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D DK55_719 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D DK55_1398 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DK55_1240 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D DK55_1239 DNA-directed RNA polymerase, beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D DK55_1208 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D DK55_672 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D DK55_2629 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D DK55_164 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D DK55_2208 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL
D DK55_2461 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D DK55_466 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DK55_839 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DK55_25 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DK55_710 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DK55_1989 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DK55_1001 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DK55_2005 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_2586 exonuclease, DNA polymerase III, epsilon subunit family domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_2911 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DK55_55 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DK55_1111 ssb4; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DK55_1202 recA; protein RecA K03553 recA; recombination protein RecA
D DK55_1668 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D DK55_1667 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D DK55_1669 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D DK55_1753 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D DK55_483 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D DK55_26 recF; DNA replication and repair RecF family protein K03629 recF; DNA replication and repair protein RecF
D DK55_2627 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D DK55_685 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D DK55_53 recR; recombination protein RecR K06187 recR; recombination protein RecR
D DK55_1406 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D DK55_2035 addA; double-strand break repair helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D DK55_2034 addB; double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D DK55_590 ftsK/SpoIIIE family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D DK55_1106 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D DK55_142 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D DK55_2604 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D DK55_1115 hupB; DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta
D DK55_794 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D DK55_170 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D DK55_2594 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D DK55_1151 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D DK55_89 hypothetical protein K14160 imuA; protein ImuA
D DK55_88 impB/mucB/samB family protein K14161 imuB; protein ImuB
D DK55_87 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D DK55_2397 DEXH box helicase, DNA ligase-associated K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D DK55_2837 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D DK55_1048 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D DK55_2836 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:babo03029]
D DK55_1515 hypothetical protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D DK55_1 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D DK55_2051 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D DK55_1165 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D DK55_1234 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D DK55_1248 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D DK55_1235 fusA; translation elongation factor G K02355 fusA; elongation factor G
D DK55_790 ubiquinol-cytochrome C chaperone family protein K17662 CBP3; cytochrome b pre-mRNA-processing protein 3
D DK55_1725 hypothetical protein K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6]
D DK55_683 era; GTP-binding protein Era K03595 era; GTPase
D DK55_931 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DK55_1756 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DK55_772 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DK55_887 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DK55_2614 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D DK55_601 amidase family protein K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D DK55_910 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D DK55_2613 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D DK55_1111 ssb4; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DK55_1159 yaeT; outer membrane assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D DK55_2059 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D DK55_185 grpE family protein K03687 GRPE; molecular chaperone GrpE
D DK55_2185 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DK55_2186 chaperonin 10 Kd subunit K04078 groES; chaperonin GroES
D DK55_2060 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D DK55_935 aminotransferase class-V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DK55_849 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin
D DK55_76 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D DK55_501 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D DK55_502 ctaG; cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D DK55_803 cytochrome oxidase assembly family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D DK55_2928 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DK55_506 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein
D DK55_2679 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein
D DK55_1401 SCO1/SenC family protein K07152 SCO1; protein SCO1
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:babo02000]
D DK55_2952 ABC transporter family protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D DK55_1005 ndvA; beta-(1-->2)glucan export ATP-binding/permease protein NdvA K24819 ndvA; ATP-binding cassette, subfamily B, beta-glucan exporter [EC:7.5.2.3]
D DK55_477 ABC transporter family protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D DK55_1517 ABC transporter family protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D DK55_1518 ABC transporter family protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D DK55_220 ABC transporter family protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D DK55_222 ABC transporter transmembrane region family protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D DK55_1678 ABC transporter family protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D DK55_2694 cydC; thiol reductant ABC exporter, CydC subunit K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D DK55_2695 cydD; thiol reductant ABC exporter, CydD subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D DK55_1641 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D DK55_1640 ftsX-like permease family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D DK55_1470 ABC transporter transmembrane region 2 family protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D DK55_1713 ccmA; heme ABC exporter, ATP-binding protein CcmA K15738 uup; ABC transport system ATP-binding/permease protein
D DK55_1324 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D DK55_125 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DK55_1323 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D DK55_126 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D DK55_1322 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D DK55_127 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D DK55_128 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D DK55_3191 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D DK55_3192 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D DK55_3193 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D DK55_3093 ABC transporter, substrate-binding , aliphatic sulfonates family protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DK55_2865 NMT1-like family protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DK55_3095 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein
D DK55_2864 binding--dependent transport system inner membrane component family protein K15554 ssuC; sulfonate transport system permease protein
D DK55_3094 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D DK55_2863 ABC transporter family protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D DK55_2498 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein
D DK55_2519 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein
D DK55_2499 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein
D DK55_2520 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein
D DK55_2500 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D DK55_2518 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D DK55_1716 thiB; thiamin/thiamine pyrophosphate ABC transporter, thiamin/thiamine pyrophospate-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D DK55_1717 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein
D DK55_1718 thiQ; thiamine ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D DK55_1578 bacterial extracellular solute-binding family protein K11073 potF; putrescine transport system substrate-binding protein
D DK55_1574 binding--dependent transport system inner membrane component family protein K11074 potI; putrescine transport system permease protein
D DK55_1576 putative spermidine/putrescine ABC transporter, permease component I protein K11075 potH; putrescine transport system permease protein
D DK55_1577 polyamine ABC transporter, ATP-binding family protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D DK55_2415 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D DK55_2829 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D DK55_2110 bacterial extracellular solute-binding family protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D DK55_2418 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D DK55_2826 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D DK55_2108 binding--dependent transport system inner membrane component family protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D DK55_2417 binding--dependent transport system inner membrane component family protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D DK55_2827 binding--dependent transport system inner membrane component family protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D DK55_2109 binding--dependent transport system inner membrane component family protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D DK55_2416 ABC transporter family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D DK55_2828 polyamine ABC transporter, ATP-binding family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D DK55_2107 polyamine ABC transporter, ATP-binding family protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D DK55_3004 bacterial extracellular solute-binding family protein K11077 attC; mannopine transport system substrate-binding protein
D DK55_3005 binding--dependent transport system inner membrane component family protein K11078 attB; mannopine transport system permease protein
D DK55_3006 binding--dependent transport system inner membrane component family protein K11079 attA2; mannopine transport system permease protein
D DK55_3007 ABC transporter family protein K11080 attA1; mannopine transport system ATP-binding protein
D DK55_2484 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D DK55_1546 choX; choline ABC transporter, periplasmic binding family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D DK55_2483 binding--dependent transport system inner membrane component family protein K02001 proW; glycine betaine/proline transport system permease protein
D DK55_1547 choW; choline ABC transporter, permease protein K02001 proW; glycine betaine/proline transport system permease protein
D DK55_2482 proV; glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D DK55_1548 choV; choline ABC transporter, ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D DK55_238 substrate binding domain of ABC-type glycine betaine transport system family protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D DK55_235 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein
D DK55_237 putative osmoprotectant uptake system permease protein yehY K05846 opuBD; osmoprotectant transport system permease protein
D DK55_236 ABC transporter family protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D DK55_226 NMT1-like family protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D DK55_224 binding--dependent transport system inner membrane component family protein K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D DK55_2728 bacterial extracellular solute-binding s, 3 family protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D DK55_2729 ABC transporter family protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D DK55_2844 ABC transporter family protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_2683 ABC transporter family protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_2477 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_3090 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_253 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_2529 ABC transporter family protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_2687 bacterial extracellular solute-binding family protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D DK55_2686 binding--dependent transport system inner membrane component family protein K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D DK55_2685 binding--dependent transport system inner membrane component family protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D DK55_2525 putative sugar-binding periplasmic protein K17315 gtsA; glucose/mannose transport system substrate-binding protein
D DK55_2526 binding--dependent transport system inner membrane component family protein K17316 gtsB; glucose/mannose transport system permease protein
D DK55_2528 binding--dependent transport system inner membrane component family protein K17317 gtsC; glucose/mannose transport system permease protein
D DK55_2847 bacterial extracellular solute-binding family protein K10236 thuE; trehalose/maltose transport system substrate-binding protein
D DK55_2846 binding--dependent transport system inner membrane component family protein K10237 thuF; trehalose/maltose transport system permease protein
D DK55_2845 binding--dependent transport system inner membrane component family protein K10238 thuG; trehalose/maltose transport system permease protein
D DK55_3057 xylF; D-xylose ABC transporter, D-xylose-binding protein K10543 xylF; D-xylose transport system substrate-binding protein
D DK55_2883 periplasmic binding s and sugar binding domain of LacI family protein K10543 xylF; D-xylose transport system substrate-binding protein
D DK55_3059 branched-chain amino acid transport system / permease component family protein K10544 xylH; D-xylose transport system permease protein
D DK55_2881 branched-chain amino acid transport system / permease component family protein K10544 xylH; D-xylose transport system permease protein
D DK55_3058 xylG; D-xylose ABC transporter, ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D DK55_2882 ABC transporter family protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D DK55_2290 sbpA; multiple sugar-binding periplasmic protein sbpA K10546 chvE; putative multiple sugar transport system substrate-binding protein
D DK55_2292 branched-chain amino acid transport system / permease component family protein K10547 gguB; putative multiple sugar transport system permease protein
D DK55_2291 ABC transporter family protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_2232 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein
D DK55_2233 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein
D DK55_571 periplasmic binding s and sugar binding domain of LacI family protein K10439 rbsB; ribose transport system substrate-binding protein
D DK55_2235 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein
D DK55_2236 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein
D DK55_570 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein
D DK55_2234 ABC transporter family protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D DK55_569 ccmA; heme ABC exporter, ATP-binding protein CcmA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D DK55_2366 periplasmic binding s and sugar binding domain of LacI family protein K17202 eryG; erythritol transport system substrate-binding protein
D DK55_2365 branched-chain amino acid transport system / permease component family protein K17203 eryF; erythritol transport system permease protein
D DK55_2364 ccmA; heme ABC exporter, ATP-binding protein CcmA K17204 eryE; erythritol transport system ATP-binding protein
D DK55_1599 periplasmic binding s and sugar binding domain of LacI family protein K17205 xltC; putative xylitol transport system substrate-binding protein
D DK55_1600 branched-chain amino acid transport system / permease component family protein K17206 xltB; putative xylitol transport system permease protein
D DK55_1601 ABC transporter family protein K17207 xltA; putative xylitol transport system ATP-binding protein
D DK55_2557 bacterial extracellular solute-binding family protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D DK55_2556 binding--dependent transport system inner membrane component family protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D DK55_2555 binding--dependent transport system inner membrane component family protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D DK55_2554 ABC transporter family protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D DK55_3119 basic membrane family protein K07335 bmpA; basic membrane protein A and related proteins
D DK55_2642 basic membrane family protein K07335 bmpA; basic membrane protein A and related proteins
D DK55_3117 branched-chain amino acid transport system / permease component family protein K23535 nupB; general nucleoside transport system permease protein
D DK55_2640 branched-chain amino acid transport system / permease component family protein K23535 nupB; general nucleoside transport system permease protein
D DK55_3116 branched-chain amino acid transport system / permease component family protein K23536 nupC; general nucleoside transport system permease protein
D DK55_2641 branched-chain amino acid transport system / permease component family protein K23536 nupC; general nucleoside transport system permease protein
D DK55_3118 ABC transporter family protein K23537 nupA; general nucleoside transport system ATP-binding protein
D DK55_2639 ABC transporter family protein K23537 nupA; general nucleoside transport system ATP-binding protein
D DK55_1027 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D DK55_1025 STAS domain protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D DK55_1026 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D DK55_1028 hypothetical protein K18480 linN; cholesterol transport system auxiliary component
D DK55_2475 bacterial extracellular solute-binding family protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D DK55_3087 bacterial extracellular solute-binding family protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D DK55_250 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D DK55_251 binding--dependent transport system inner membrane component family protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D DK55_3089 binding--dependent transport system inner membrane component family protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D DK55_2474 binding--dependent transport system inner membrane component family protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D DK55_252 binding--dependent transport system inner membrane component family protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D DK55_3088 binding--dependent transport system inner membrane component family protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D DK55_2473 binding--dependent transport system inner membrane component family protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D DK55_1335 periplasmic binding s and sugar binding domain of LacI family protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D DK55_1333 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein
D DK55_1332 ABC transporter family protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DK55_2071 PBP superfamily domain protein K02040 pstS; phosphate transport system substrate-binding protein
D DK55_2072 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D DK55_2073 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D DK55_2074 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D DK55_762 bacterial extracellular solute-binding s, 3 family protein K09969 aapJ; general L-amino acid transport system substrate-binding protein
D DK55_2279 bacterial extracellular solute-binding s, 3 family protein K09969 aapJ; general L-amino acid transport system substrate-binding protein
D DK55_763 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09970 aapQ; general L-amino acid transport system permease protein
D DK55_765 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09971 aapM; general L-amino acid transport system permease protein
D DK55_1896 ABC transporter family protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D DK55_766 ABC transporter family protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D DK55_2536 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein
D DK55_2535 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10009 tcyB; L-cystine transport system permease protein
D DK55_2534 ABC transporter family protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D DK55_3080 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_1290 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_2274 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_3099 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_3133 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_35 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_1735 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_1737 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_2778 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_2786 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_2564 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DK55_3081 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_2271 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_3101 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_3134 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_1742 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_2785 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_2563 branched-chain amino acid transport system / permease component family protein K01997 livH; branched-chain amino acid transport system permease protein
D DK55_3082 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_2784 branched-chain amino acid transport system / permease component family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_1741 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_2270 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_3102 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_3135 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_2562 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein
D DK55_3136 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_2273 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_3103 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_1740 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_2561 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DK55_1739 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_2783 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_3083 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_2272 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_3104 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_3137 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_2560 ABC transporter family protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DK55_2268 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein
D DK55_12 lipo, YaeC family protein K02073 metQ; D-methionine transport system substrate-binding protein
D DK55_2266 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein
D DK55_2267 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein
D DK55_1986 periplasmic binding domain protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D DK55_1987 branched-chain amino acid transport system / permease component family protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D DK55_1988 ABC transporter family protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D DK55_958 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D DK55_1890 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D DK55_345 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D DK55_2580 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D DK55_2581 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D DK55_874 lysine-arginine-ornithine-binding periplasmic family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D DK55_1892 amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D DK55_1893 ABC transporter family protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D DK55_2666 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D DK55_2667 bacterial extracellular solute-binding s, 5 Middle family protein K15580 oppA; oligopeptide transport system substrate-binding protein
D DK55_2668 binding--dependent transport system inner membrane component family protein K15581 oppB; oligopeptide transport system permease protein
D DK55_2669 binding--dependent transport system inner membrane component family protein K15582 oppC; oligopeptide transport system permease protein
D DK55_2670 nikE; nickel import ATP-binding protein NikE K10823 oppF; oligopeptide transport system ATP-binding protein
D DK55_1553 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein
D DK55_1552 binding--dependent transport system inner membrane component family protein K12369 dppB; dipeptide transport system permease protein
D DK55_1551 binding--dependent transport system inner membrane component family protein K12370 dppC; dipeptide transport system permease protein
D DK55_1550 ABC transporter family protein K12371 dppD; dipeptide transport system ATP-binding protein
D DK55_1549 ABC transporter family protein K12372 dppF; dipeptide transport system ATP-binding protein
D DK55_2421 bacterial extracellular solute-binding s, 5 Middle family protein K15584 nikA; nickel transport system substrate-binding protein
D DK55_2422 bacterial extracellular solute-binding s, 5 Middle family protein K15584 nikA; nickel transport system substrate-binding protein
D DK55_2423 nikB; nickel ABC transporter, permease subunit NikB K15585 nikB; nickel transport system permease protein
D DK55_2424 nikC; nickel ABC transporter, permease subunit NikC K15586 nikC; nickel transport system permease protein
D DK55_2425 nikD; nickel import ATP-binding protein NikD K15587 nikD; nickel transport system ATP-binding protein [EC:7.2.2.11]
D DK55_2426 nikE; nickel import ATP-binding protein NikE K10824 nikE; nickel transport system ATP-binding protein [EC:7.2.2.11]
D DK55_2632 transmembrane protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DK55_2768 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DK55_2438 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DK55_2984 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DK55_2991 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DK55_2997 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DK55_2918 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DK55_2770 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DK55_2439 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DK55_2992 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DK55_2998 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DK55_2981 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DK55_2917 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DK55_2771 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DK55_2440 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DK55_2993 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DK55_2999 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DK55_2980 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DK55_2916 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DK55_2441 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DK55_3000 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DK55_2994 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DK55_2979 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DK55_2915 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DK55_2773 hypothetical protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DK55_2914 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DK55_2774 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DK55_2978 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DK55_2442 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DK55_2995 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DK55_3001 hypothetical protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DK55_32 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein
D DK55_33 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein
D DK55_31 binding--dependent transport system inner membrane component family protein K13894 yejB; microcin C transport system permease protein
D DK55_30 binding--dependent transport system inner membrane component family protein K13895 yejE; microcin C transport system permease protein
D DK55_29 nikE; nickel import ATP-binding protein NikE K13896 yejF; microcin C transport system ATP-binding protein
D DK55_2542 periplasmic binding family protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D DK55_2540 fecCD transport family protein K25283 yclO; iron-siderophore transport system permease protein
D DK55_2541 fecCD transport family protein K25284 yclN; iron-siderophore transport system permease protein
D DK55_2539 ABC transporter family protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D DK55_1339 periplasmic binding family protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D DK55_2468 periplasmic binding family protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D DK55_1338 fecCD transport family protein K02015 ABC.FEV.P; iron complex transport system permease protein
D DK55_2469 ABC 3 transport family protein K02015 ABC.FEV.P; iron complex transport system permease protein
D DK55_2470 ABC transporter family protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D DK55_1336 ABC transporter family protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D DK55_3027 periplasmic solute binding family protein K09815 znuA; zinc transport system substrate-binding protein
D DK55_3029 ABC 3 transport family protein K09816 znuB; zinc transport system permease protein
D DK55_3028 ABC transporter family protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D DK55_1358 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D DK55_1356 cobalt uptake substrate-specific transmembrane region family protein K02007 cbiM; cobalt/nickel transport system permease protein
D DK55_1359 ABC transporter family protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D DK55_1355 hypothetical protein K10094 cbiK; nickel transport protein
D DK55_1357 putative cobalamin biosynthesis CbiM protein K16915 cbiL; nickel transport protein
D DK55_536 bioY family protein K03523 bioY; biotin transport system substrate-specific component
D DK55_1682 bioY family protein K03523 bioY; biotin transport system substrate-specific component
D DK55_550 ABC-2 type transporter family protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D DK55_549 ABC transporter family protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D DK55_708 putative permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D DK55_707 putative permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D DK55_174 ABC transporter family protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D DK55_2871 ABC-2 transporter family protein K19341 nosY; Cu-processing system permease protein
D DK55_2872 ABC transporter family protein K19340 nosF; Cu-processing system ATP-binding protein
D DK55_837 liporeleasing system, transmembrane , LolC/E family protein K09808 lolC_E; lipoprotein-releasing system permease protein
D DK55_838 ABC transporter family protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D DK55_115 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D DK55_114 ccmC; heme exporter CcmC family protein K02195 ccmC; heme exporter protein C
D DK55_113 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D DK55_112 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D DK55_1932 putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D DK55_1933 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D DK55_1341 ABC-2 type transporter family protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D DK55_2732 ABC-2 type transporter family protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D DK55_2733 putative aBC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D DK55_2734 ABC transporter family protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D DK55_105 ftsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D DK55_104 ABC transporter family protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D DK55_937 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D DK55_1070 sodium Bile acid symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D DK55_384 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D DK55_359 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D DK55_2181 gluP; glucose/galactose transporter WARNING family protein K02429 fucP; MFS transporter, FHS family, L-fucose permease
D DK55_1436 sugar (and other) transporter family protein K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D DK55_1648 sugar (and other) transporter family protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D DK55_2209 sugar (and other) transporter family protein K08196 mucK; MFS transporter, AAHS family, cis,cis-muconate transporter
D DK55_587 putative membrane protein K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D DK55_2850 narK; nitrite transporter family protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D DK55_1387 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D DK55_848 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D DK55_2449 sugar (and other) transporter family protein K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein
D DK55_2111 drug resistance MFS transporter, drug:H+ antiporter-2 family protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D DK55_2922 sugar (and other) transporter family protein K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein
D DK55_677 fsr; fosmidomycin resistance protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D DK55_1766 major Facilitator Superfamily protein K06902 UMF1; MFS transporter, UMF1 family
D DK55_1701 major Facilitator Superfamily protein K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D DK55_2674 sugar (and other) transporter family protein K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D DK55_1816 ptsP; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D DK55_2029 phosphocarrier, HPr family protein K02784 ptsH; phosphocarrier protein HPr
D DK55_2028 PTS system fructose IIA component family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D DK55_177 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D DK55_1935 aqpZ2; aquaporin Z 2 K06188 aqpZ; aquaporin Z
D DK55_1840 amt; ammonium transporter family protein K03320 amt; ammonium transporter, Amt family
D DK55_2226 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DK55_722 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DK55_2946 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DK55_1473 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DK55_366 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D DK55_1316 mechanosensitive ion channel family protein K05802 mscK; potassium-dependent mechanosensitive channel
D DK55_1046 mechanosensitive ion channel family protein K16053 ybdG; miniconductance mechanosensitive channel
D DK55_2350 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D DK55_1354 yut; urea transporter K08717 utp; urea transporter
D DK55_2125 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D DK55_3051 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB
D DK55_1677 ompA family protein K02557 motB; chemotaxis protein MotB
D DK55_1636 exbB; tonB-system energizer ExbB K03561 exbB; biopolymer transport protein ExbB
D DK55_1637 exbD; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D DK55_1665 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D DK55_1664 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR
D DK55_585 corA-like Mg2+ transporter family protein K03284 corA; magnesium transporter
D DK55_1361 crcB-like family protein K06199 crcB; fluoride exporter
D DK55_2404 crcB-like family protein K06199 crcB; fluoride exporter
D DK55_2405 crcB-like family protein K06199 crcB; fluoride exporter
D DK55_1959 transporter associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D DK55_980 outer membrane autotransporter barrel domain protein K16079 omp31; outer membrane immunogenic protein
D DK55_721 opacity porin family protein K16079 omp31; outer membrane immunogenic protein
D DK55_1590 hypothetical protein K16079 omp31; outer membrane immunogenic protein
D DK55_1279 hypothetical protein K16079 omp31; outer membrane immunogenic protein
D DK55_136 outer membrane autotransporter barrel domain protein K16079 omp31; outer membrane immunogenic protein
D DK55_137 outer membrane autotransporter barrel domain protein K16079 omp31; outer membrane immunogenic protein
D DK55_954 outer membrane beta-barrel domain protein K06076 fadL; long-chain fatty acid transport protein
D DK55_1947 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D DK55_3055 outer membrane autotransporter barrel domain protein K19231 bmaC; fibronectin-binding autotransporter adhesin
D DK55_2164 outer membrane autotransporter barrel domain protein K19231 bmaC; fibronectin-binding autotransporter adhesin
D DK55_1340 tonB dependent receptor family protein K16092 btuB; vitamin B12 transporter
D DK55_3097 bhuA; heme transporter BhuA K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D DK55_2229 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DK55_800 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein
D DK55_2760 polysaccharide biosynthesis/export family protein K01991 wza; polysaccharide biosynthesis/export protein
D DK55_1159 yaeT; outer membrane assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D DK55_1407 yfiO; outer membrane assembly lipoYfiO family protein K05807 bamD; outer membrane protein assembly factor BamD
D DK55_68 surface antigen variable number repeat family protein K07278 tamA; translocation and assembly module TamA
D DK55_69 hypothetical protein K09800 tamB; translocation and assembly module TamB
D DK55_90 coiled stalk of trimeric autotransporter adhesin family protein K19232 btaE; hyaluronate-binding autotransporter adhesin
D DK55_1792 hypothetical protein K19233 btaF; ECM component-binding autotransporter adhesin
D DK55_173 ostA-like family protein K09774 lptA; lipopolysaccharide export system protein LptA
D DK55_172 lipopolysaccharide-assembly, LptC-related family protein K11719 lptC; lipopolysaccharide export system protein LptC
D DK55_706 organic solvent tolerance family protein K04744 lptD; LPS-assembly protein
D DK55_1755 lipopolysaccharide-assembly family protein K03643 lptE; LPS-assembly lipoprotein
D DK55_2087 transporter associated domain protein K06189 corC; hemolysin (HlyC) family protein
D DK55_373 lrgA family protein K06518 cidA; holin-like protein
D DK55_3160 cycA; D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter
D DK55_2817 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter
D DK55_529 cation diffusion facilitator transporter family protein K16264 czcD; cobalt-zinc-cadmium efflux system protein
D DK55_1097 acrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump
D DK55_343 bepE; efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D DK55_2312 acrB/AcrD/AcrF family protein K21134 triC; multidrug efflux pump
D DK55_932 small Multidrug Resistance family protein K03297 emrE; small multidrug resistance pump
D DK55_796 sugE; quaternary ammonium compound-resistance protein sugE K11741 sugE; quaternary ammonium compound-resistance protein SugE
D DK55_1299 eamA-like transporter family protein K08978 TC.BAT1; bacterial/archaeal transporter family protein
D DK55_701 eamA-like transporter family protein K05786 rarD; chloramphenicol-sensitive protein RarD
D DK55_737 transporter, lactate permease family protein K03303 lutP; lactate permease
D DK55_2200 transporter, monovalent cation:proton antiporter-2 family protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D DK55_1319 trkA-N domain protein K26735 KEA4_5_6; K+:H+ antiporter
D DK55_1479 cation transport family protein K03498 trkH; trk/ktr system potassium uptake protein
D DK55_1122 trkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D DK55_2551 permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D DK55_2048 benzoate membrane transport family protein K05782 benE; benzoate membrane transport protein
D DK55_521 voltage gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family
D DK55_2808 voltage gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family
D DK55_1424 metal ion transporter, metal ion family protein K03322 mntH; manganese transport protein
D DK55_1463 na+/Pi-cotransporter family protein K03324 yjbB; phosphate:Na+ symporter
D DK55_2702 cpa3; monovalent cation:proton antiporter family protein K05559 phaA; multicomponent K+:H+ antiporter subunit A
D DK55_2701 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L family protein K05560 phaC; multicomponent K+:H+ antiporter subunit C
D DK55_2700 NADH-Ubiquinone/plastoquinone (complex I), various chains family protein K05561 phaD; multicomponent K+:H+ antiporter subunit D
D DK55_2699 na+/H+ ion antiporter subunit K05562 phaE; multicomponent K+:H+ antiporter subunit E
D DK55_2698 multiple resistance and pH regulation F family protein K05563 phaF; multicomponent K+:H+ antiporter subunit F
D DK55_2697 monovalent cation/proton antiporter, MnhG/PhaG subunit K05564 phaG; multicomponent K+:H+ antiporter subunit G
D DK55_160 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D DK55_1432 membrane transport family protein K13936 mdcF; malonate transporter and related proteins
D DK55_1371 kup; potassium uptake protein K03549 kup; KUP system potassium uptake protein
D DK55_695 lysE type translocator family protein K06895 lysE; L-lysine exporter family protein LysE/ArgO
D DK55_1863 lysE type translocator family protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D DK55_2451 azlC family protein K26605 azlC; branched chain amino acid efflux pump
D DK55_1800 azlC family protein K26605 azlC; branched chain amino acid efflux pump
D DK55_2450 branched-chain amino acid transport family protein K26606 azlD; branched chain amino acid efflux pump
D DK55_1948 hypothetical protein K09125 yhhQ; queuosine precursor transporter
D DK55_1647 rubrerythrin family protein K22737 mbfA; erythrin-vacuolar iron transport family protein
D DK55_1416 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D DK55_2795 iron permease FTR1 family protein K07243 FTR; high-affinity iron transporter
D DK55_2797 fe2+ transport family protein K07230 p19; periplasmic iron binding protein
D DK55_3198 high-affinity nickel-transport family protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D DK55_1638 hypothetical protein K03832 tonB; periplasmic protein TonB
D DK55_1661 pal; peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D DK55_1662 tolB; Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein
D DK55_788 V-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D DK55_2624 cytochrome C biogenesis transmembrane region family protein K06196 ccdA; cytochrome c-type biogenesis protein
D DK55_2851 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D DK55_2852 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D DK55_2854 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D DK55_1064 hlyD secretion family protein K03543 emrA; membrane fusion protein, multidrug efflux system
D DK55_2113 hlyD secretion family protein K03543 emrA; membrane fusion protein, multidrug efflux system
D DK55_342 bepD; efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_1098 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_2821 bepF; efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_2310 efflux transporter, RND family, MFP subunit K21136 triA; membrane fusion protein, multidrug efflux system
D DK55_2311 efflux transporter, RND family, MFP subunit K21137 triB; membrane fusion protein, multidrug efflux system
D DK55_2407 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D DK55_1642 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system
D DK55_2761 chain length determinant family protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D DK55_417 sbmA; protein sbmA K17938 sbmA; peptide/bleomycin uptake transporter
D DK55_636 ccmF; cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D DK55_3147 mgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D DK55_538 uraH; hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
C 02044 Secretion system [BR:babo02044]
D DK55_1928 YGGT family protein K02221 yggT; YggT family protein
D DK55_3038 flhA; flagellar biosynthesis protein flhA K02400 flhA; flagellar biosynthesis protein FlhA
D DK55_2117 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D DK55_3053 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D DK55_2128 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D DK55_2120 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D DK55_2156 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D DK55_3040 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D DK55_3036 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D DK55_3173 transglycosylase SLT domain protein K03194 virB1; type IV secretion system protein VirB1
D DK55_3172 trbC/VIRB2 family protein K03197 virB2; type IV secretion system protein VirB2
D DK55_3171 type IV secretory pathway, VirB3-like family protein K03198 virB3; type IV secretion system protein VirB3
D DK55_3170 ptlC; type IV secretion system protein ptlC K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D DK55_3169 virB5; P-type DNA transfer protein VirB5 K03200 virB5; type IV secretion system protein VirB5
D DK55_3168 trbL/VirB6 plasmid conjugal transfer family protein K03201 virB6; type IV secretion system protein VirB6
D DK55_3167 putative traI protein K03202 virB7; type IV secretion system protein VirB7
D DK55_3166 virB8; type IV secretion system protein virB8 K03203 virB8; type IV secretion system protein VirB8
D DK55_3165 virB9; P-type conjugative transfer protein VirB9 K03204 virB9; type IV secretion system protein VirB9
D DK55_3164 bacterial conjugation TrbI-like family protein K03195 virB10; type IV secretion system protein VirB10
D DK55_3163 virB11; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D DK55_1947 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D DK55_1883 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DK55_2006 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D DK55_1318 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein
D DK55_901 secD; export membrane protein SecD K12257 secDF; SecD/SecF fusion protein
D DK55_1246 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D DK55_1143 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D DK55_1212 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D DK55_1773 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D DK55_1874 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D DK55_900 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D DK55_2928 yidC; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DK55_892 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D DK55_893 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D DK55_894 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:babo02042]
D DK55_1959 transporter associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D DK55_86 hemolysin-III related family protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:babo02022]
D DK55_348 his Kinase A domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D DK55_2076 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D DK55_1497 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D DK55_1496 hypothetical protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D DK55_2026 HAMP domain protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
D DK55_2025 response regulator K14981 chvI; two-component system, OmpR family, response regulator ChvI
D DK55_3047 ftcR; flagellar transcriptional regulator ftcR K21603 ftcR; two-component system, OmpR family, flagellar system response regulator FtcR
D DK55_2217 HAMP domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D DK55_2218 hypothetical protein K02483 K02483; two-component system, OmpR family, response regulator
D DK55_639 response regulator K02483 K02483; two-component system, OmpR family, response regulator
D DK55_2723 response regulator K02483 K02483; two-component system, OmpR family, response regulator
D DK55_631 response regulator K02483 K02483; two-component system, OmpR family, response regulator
D DK55_387 bacterial regulatory s, luxR family protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D DK55_386 histidine kinase family protein K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D DK55_1126 his Kinase A domain protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D DK55_1125 ntrC; nitrogen regulation protein NR K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D DK55_1124 sensory box protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D DK55_1123 bacterial regulatory , Fis family protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D DK55_643 sensory box protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D DK55_604 his Kinase A domain protein K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
D DK55_2598 pleD; response regulator K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65]
D DK55_2597 divK; response regulator K11443 divK; two-component system, cell cycle response regulator DivK
D DK55_1044 sensory box protein K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
D DK55_1565 ctrA; response regulator K13584 ctrA; two-component system, cell cycle response regulator CtrA
D DK55_3151 response regulator K13589 cpdR; two-component system, cell cycle response regulator CpdR
D DK55_151 regB; sensor histidine kinase regB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D DK55_154 regA; photosynthetic apparatus regulatory protein regA K15012 regA; two-component system, response regulator RegA
C 02035 Bacterial motility proteins [BR:babo02035]
D DK55_2128 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D DK55_2156 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D DK55_3040 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D DK55_3036 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D DK55_3038 flhA; flagellar biosynthesis protein flhA K02400 flhA; flagellar biosynthesis protein FlhA
D DK55_2117 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D DK55_2124 putative surface presentation of antigens (SPOA) protein K02416 fliM; flagellar motor switch protein FliM
D DK55_2120 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D DK55_3053 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D DK55_2150 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D DK55_2154 flagellar L-ring family protein K02393 flgH; flagellar L-ring protein FlgH
D DK55_2155 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL
D DK55_2148 flagellar hook-basal body complex FliE family protein K02408 fliE; flagellar hook-basal body complex protein FliE
D DK55_2146 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D DK55_2147 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D DK55_3041 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D DK55_2127 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D DK55_2149 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D DK55_3034 rod binding family protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D DK55_3046 flgE; flagellar hook protein flgE K02390 flgE; flagellar hook protein FlgE
D DK55_3045 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D DK55_3044 hypothetical protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D DK55_3054 fliC; flagellin K02406 fliC; flagellin
D DK55_2125 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA
D DK55_3051 membrane MotB of proton-channel complex MotA/MotB family protein K02557 motB; chemotaxis protein MotB
D DK55_1677 ompA family protein K02557 motB; chemotaxis protein MotB
D DK55_3050 putative chemotaxis protein K10564 motC; chemotaxis protein MotC
D DK55_3049 flagellar hook-length control FliK family protein K10565 motD; chemotaxis protein MotD
D DK55_2536 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein
D DK55_3043 flagellar FlaF family protein K06602 flaF; flagellar biosynthesis activator protein FlaF
D DK55_3042 flagellar FlbT family protein K06601 flbT; flagellar biosynthesis repressor protein FlbT
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:babo04812]
D DK55_1409 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D DK55_1410 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D DK55_2835 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D DK55_2834 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D DK55_2833 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D DK55_1991 cobQ/CobB/MinD/ParA nucleotide binding domain protein K03496 parA; chromosome partitioning protein
D DK55_3109 repA; plasmid partitioning protein RepA K03496 parA; chromosome partitioning protein
D DK55_1990 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DK55_3110 repB; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:babo04147]
D DK55_1139 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DK55_1690 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DK55_1691 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D DK55_1709 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DK55_2558 dipeptidase AC, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D DK55_2185 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DK55_2059 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D DK55_336 phosphoglucose isomerase family protein K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DK55_2807 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D DK55_1234 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D DK55_1248 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D DK55_1172 hit-like protein involved in cell-cycle regulation K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D DK55_1070 sodium Bile acid symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D DK55_340 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DK55_2749 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2430 acetyl-CoA C-acetyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_1726 phbA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D DK55_2030 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D DK55_743 AAA domain protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D DK55_1211 adenylate kinase family protein K00939 adk; adenylate kinase [EC:2.7.4.3]
D DK55_1513 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D DK55_1917 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D DK55_92 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D DK55_329 amidohydrolase family protein K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D DK55_2354 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DK55_1010 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_2457 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_2488 glutamine synthetase, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DK55_777 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D DK55_99 putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D DK55_1200 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D DK55_2744 ACT domain protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DK55_1652 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DK55_1765 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D DK55_1861 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_2678 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1133 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DK55_1906 electron transfer flavodomain protein K03522 fixB; electron transfer flavoprotein alpha subunit
D DK55_2447 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D DK55_1144 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DK55_2954 gpm1; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:babo02048]
D DK55_2382 hsdR; type I site-specific deoxyribonuclease, HsdR family protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D DK55_2383 type I restriction modification DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D DK55_2384 hsdM; type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D DK55_522 DNA methylase family protein K13581 ccrM; modification methylase [EC:2.1.1.72]
D DK55_3014 pemK-like family protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D DK55_582 death-on-curing family protein K07341 doc; death on curing protein
D DK55_1409 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D DK55_774 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D DK55_2616 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D DK55_1022 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DK55_1152 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DK55_2628 flavinator of succinate dehydrogenase family protein K09159 cptB; antitoxin CptB
D DK55_935 aminotransferase class-V family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:babo01504]
D DK55_2630 fosX; fosfomycin resistance protein fosX K21252 fosX; fosfomycin resistance protein FosX
D DK55_2623 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D DK55_342 bepD; efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_1098 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_2821 bepF; efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D DK55_1097 acrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump
D DK55_343 bepE; efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D DK55_233 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:babo00537]
D DK55_1200 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D DK55_2558 dipeptidase AC, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:babo03100]
D DK55_45 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DK55_1608 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DK55_1807 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DK55_3021 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DK55_1927 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DK55_323 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DK55_740 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DK55_968 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DK55_1971 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DK55_2585 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D DK55_2831 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DK55_816 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DK55_2592 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D DK55_542 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DK55_1584 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DK55_1623 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DK55_1273 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DK55_1274 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DK55_1249 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DK55_2923 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DK55_2332 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DK55_970 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DK55_1571 tRNA-His K14226 tRNA-His; tRNA His
D DK55_1609 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DK55_1808 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DK55_3022 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DK55_908 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DK55_1054 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DK55_1091 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DK55_1083 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DK55_1888 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DK55_2955 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DK55_1328 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DK55_2621 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DK55_1604 tRNA-Met K14230 tRNA-Met; tRNA Met
D DK55_3017 tRNA-Met K14230 tRNA-Met; tRNA Met
D DK55_1804 tRNA-Met K14230 tRNA-Met; tRNA Met
D DK55_1456 tRNA-Met K14230 tRNA-Met; tRNA Met
D DK55_1569 tRNA-Met K14230 tRNA-Met; tRNA Met
D DK55_297 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D DK55_797 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DK55_209 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DK55_738 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DK55_663 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DK55_1797 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DK55_2649 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DK55_2973 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DK55_307 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DK55_942 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DK55_2393 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DK55_1247 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D DK55_1250 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D DK55_815 tRNA-Val K14237 tRNA-Val; tRNA Val
D DK55_3150 tRNA-Val K14237 tRNA-Val; tRNA Val
D DK55_967 tRNA-Val K14237 tRNA-Val; tRNA Val
D DK55_1610 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DK55_1809 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DK55_3023 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DK55_1806 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DK55_3019 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DK55_1606 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DK55_1605 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DK55_1805 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DK55_3018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D DK55_1982 afr; 1,5-anhydro-D-fructose reductase K19181 afr; 1,5-anhydro-D-fructose reductase (1,5-anhydro-D-mannitol-forming) [EC:1.1.1.292]
D DK55_2174 aldo/keto reductase family protein K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D DK55_2361 FAD dependent oxidoreductase family protein K21054 eryB; D-erythritol 1-phosphate dehydrogenase [EC:1.1.1.402]
D DK55_2139 3-beta hydroxysteroid dehydrogenase/isomerase family protein K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410]
D DK55_2960 acyl-CoA reductase family protein K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D DK55_648 pyridine nucleotide-disulfide oxidoreductase family protein K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D DK55_2637 zinc-binding dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D DK55_2787 NAD(P)H quinone oxidoreductase, PIG3 family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D DK55_2806 cytochrome c family protein K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2]
D DK55_2971 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D DK55_2751 msrB; methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D DK55_653 hypothetical protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D DK55_1534 hypothetical protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D DK55_2239 oxidoreductase molybdopterin binding domain protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D DK55_929 redoxin family protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D DK55_2343 peroxiredoxin, Ohr subfamily protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D DK55_2511 ahpD; alkylhydroperoxidase, AhpD family protein K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28]
D DK55_2510 redoxin family protein K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28]
D DK55_1525 aspartyl/Asparaginyl beta-hydroxylase family protein K22616 olsC; ornithine lipid ester-linked acyl 2-hydroxylase [EC:1.14.11.58]
D DK55_2514 cueO; blue copper oxidase CueO K14588 cueO; cuproxidase [EC:1.16.3.4]
D DK55_378 fpr; ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D DK55_997 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D DK55_948 L-isoaspartate family protein K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D DK55_897 L-isoaspartate family protein K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D DK55_485 methyltransferase domain protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D DK55_1437 tam; trans-aconitate 2-methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144]
D DK55_2088 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D DK55_2083 acyltransferase family protein K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270]
D DK55_1523 acetyltransferase domain protein K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D DK55_1619 acetyltransferase domain protein K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]
D DK55_914 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D DK55_775 hypothetical protein K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D DK55_165 acetyltransferase domain protein K22310 olsB; L-ornithine Nalpha-acyltransferase [EC:2.3.2.30]
D DK55_1501 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D DK55_2223 apbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D DK55_2869 apbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D DK55_2362 hypothetical protein K00862 eryA; erythritol kinase (D-erythritol 1-phosphate-forming) [EC:2.7.1.215]
D DK55_2142 hypothetical protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217]
D DK55_2001 kinase/pyrophosphorylase family protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D DK55_641 glutamate-ammonia ligase adenylyltransferase family protein K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D DK55_1666 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D DK55_1040 histidine phosphatase super family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D DK55_2813 EAL domain protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D DK55_3092 type I phosphodiesterase / nucleotide pyrophosphatase family protein K01133 betC; choline-sulfatase [EC:3.1.6.6]
D DK55_1003 hydrolase, TatD family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D DK55_2590 denV; endonuclease V K01161 E3.1.25.1; deoxyribonuclease (pyrimidine dimer) [EC:3.1.25.1]
D DK55_1077 D-alanyl-D-alanine carboxypeptidase family protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D DK55_1175 D-alanyl-D-alanine carboxypeptidase family protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D DK55_1968 D-alanyl-D-alanine carboxypeptidase family protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D DK55_1427 N-acetylmuramoyl-L-alanine amidase family protein K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DK55_2743 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D DK55_2939 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D DK55_1821 carbon-nitrogen hydrolase family protein K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D DK55_2472 rutC family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D DK55_1529 AAA domain family protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D DK55_1321 serine hydrolase family protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D DK55_859 serine hydrolase family protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D DK55_2138 hypothetical protein K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104]
D DK55_2419 hypothetical protein K26399 K26399; arabinonate dehydratase [EC:4.2.1.5]
D DK55_1012 yjeF-related family protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D DK55_2765 mutarotase, YjhT family protein K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24]
D DK55_1330 rbsD / FucU transport family protein K02431 fucU; L-fucose mutarotase [EC:5.1.3.29]
D DK55_255 hypothetical protein K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D DK55_2360 putative d-erythrulose 4-phosphate dehydrogenase K21909 eryC; D-erythrulose 1-phosphate 3-epimerase [EC:5.1.3.38]
D DK55_1103 cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D DK55_2357 triosephosphate isomerase family protein K21910 eryH; L-erythrulose 1-phosphate isomerase [EC:5.3.1.33]
D DK55_2356 sugar-phosphate isomerase, RpiB/LacA/LacB family protein K21911 eryI; D-erythrulose 4-phosphate isomerase [EC:5.3.1.34]
D DK55_2141 xylose isomerase-like TIM barrel family protein K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D DK55_402 copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D DK55_1952 copper-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D DK55_3144 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D DK55_1276 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
D DK55_2064 calcium-binding protein, regucalcin K22217 K22217; sugar lactone lactonase
C 99982 Energy metabolism
D DK55_2524 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein
D DK55_1723 4Fe-4S binding domain protein K05524 fdxA; ferredoxin
D DK55_2895 von Willebrand factor type A domain protein K02448 norD; nitric oxide reductase NorD protein
D DK55_2900 cytochrome c oxidase subunit III family protein K02164 norE; nitric oxide reductase NorE protein
D DK55_2899 prokaryotic Cytochrome C oxidase subunit IV family protein K04747 norF; nitric oxide reductase NorF protein
D DK55_2896 AAA domain family protein K04748 norQ; nitric oxide reductase NorQ protein
D DK55_1907 electron transfer flavodomain protein K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
D DK55_2611 hypothetical protein K09456 aidB; putative acyl-CoA dehydrogenase
C 99984 Nucleotide metabolism
D DK55_2838 nrdI; nrdI protein K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D DK55_182 etoposide-induced 2.4 family protein K06203 cysZ; CysZ protein
D DK55_1757 hypothetical protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D DK55_1320 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
D DK55_1570 glycosyltransferase 25 family protein K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D DK55_1303 cobW; cobalamin biosynthesis protein CobW K02234 cobW; cobalamin biosynthesis protein CobW
D DK55_1828 tetratricopeptide repeat family protein K02498 hemY; HemY protein
D DK55_2966 ubiB; 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D DK55_2860 SCP-2 sterol transfer family protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D DK55_959 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D DK55_1130 polyketide cyclase / dehydrase and lipid transport family protein K18588 COQ10; coenzyme Q-binding protein COQ10
C 99988 Secondary metabolism
C 99999 Others
D DK55_2182 yqjF; inner membrane protein yqjF K15977 K15977; putative oxidoreductase
D DK55_2240 hypothetical protein K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D DK55_458 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein
D DK55_1262 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein
D DK55_1472 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein
D DK55_2323 hypothetical protein K06959 tex; protein Tex
C 99974 Translation
D DK55_1342 ABC-2 type transporter family protein K13926 rbbA; ribosome-dependent ATPase
D DK55_1343 ccmA; heme ABC exporter, ATP-binding protein CcmA K13926 rbbA; ribosome-dependent ATPase
C 99975 Protein processing
D DK55_1174 clpS; ATP-dependent Clp protease adapter protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D DK55_909 tig; trigger factor K03545 tig; trigger factor
D DK55_2238 ferric reductase like transmembrane component family protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D DK55_320 ureE1; urease accessory protein ureE 1 K03187 ureE; urease accessory protein
D DK55_1350 hypothetical protein K03187 ureE; urease accessory protein
D DK55_321 ureF family protein K03188 ureF; urease accessory protein
D DK55_1351 ureF family protein K03188 ureF; urease accessory protein
D DK55_322 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D DK55_1352 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D DK55_315 ureD urease accessory family protein K03190 ureD; urease accessory protein
D DK55_1353 ureD urease accessory family protein K03190 ureD; urease accessory protein
D DK55_669 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D DK55_2839 nrdH; glutaredoxin-like NrdH family protein K06191 nrdH; glutaredoxin-like protein NrdH
D DK55_2067 sigma-54 interaction domain protein K07391 comM; magnesium chelatase family protein
D DK55_2941 hypothetical protein K07401 K07401; selenoprotein W-related protein
D DK55_396 xdhC; xanthine dehydrogenase accessory protein XdhC K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D DK55_1278 DNA repair RadC family protein K03630 radC; DNA repair protein RadC
D DK55_2940 rmuC family protein K09760 rmuC; DNA recombination protein RmuC
D DK55_193 hypothetical protein K07460 yraN; putative endonuclease
D DK55_2942 GIY-YIG catalytic domain protein K07461 K07461; putative endonuclease
D DK55_2606 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein
D DK55_1205 sigma-54 interaction domain protein K07478 ycaJ; putative ATPase
D DK55_2651 transposase family protein K07483 K07483; transposase
D DK55_563 transposase family protein K07483 K07483; transposase
D DK55_2652 putative transposase K07484 K07484; transposase
D DK55_2653 transposase IS66 family protein K07484 K07484; transposase
D DK55_543 transposase DDE domain protein K07492 K07492; putative transposase
D DK55_560 hypothetical protein K07492 K07492; putative transposase
D DK55_925 hypothetical protein K07492 K07492; putative transposase
D DK55_985 hypothetical protein K07492 K07492; putative transposase
D DK55_558 transposase DDE domain protein K07492 K07492; putative transposase
D DK55_546 integrase core domain protein K07497 K07497; putative transposase
D DK55_2974 integrase core domain protein K07497 K07497; putative transposase
D DK55_747 integrase core domain protein K07497 K07497; putative transposase
D DK55_2136 transposase family protein K07497 K07497; putative transposase
D DK55_3016 integrase core domain protein K07497 K07497; putative transposase
D DK55_545 putative transposase K07497 K07497; putative transposase
D DK55_1801 transposase IS66 family protein K07498 K07498; putative transposase
D DK55_1798 transposase IS66 family protein K07498 K07498; putative transposase
C 99979 Viral proteins
C 99998 Others
D DK55_54 DNA-binding protein, YbaB/EbfC family K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D DK55_327 acrB/AcrD/AcrF family protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D DK55_2715 agcS; amino acid carrier family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D DK55_1654 sodium Bile acid symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D DK55_1851 permease for cytosine/purine, uracil, thiamine, allantoin family protein K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
C 99978 Cell growth
D DK55_1875 ispZ; intracellular septation protein A K06190 ispZ; intracellular septation protein
D DK55_1784 peptidase M23 family protein K22719 envC; murein hydrolase activator
C 99993 Cell motility
C 99995 Signaling proteins
D DK55_2351 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D DK55_2085 phoH-like family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D DK55_1430 glycosyl hydrolases 25 family protein K07273 acm; lysozyme
D DK55_2714 glycosyl hydrolases 25 family protein K07273 acm; lysozyme
D DK55_1535 hypothetical protein K07275 ompW; outer membrane protein
D DK55_1573 asmA family protein K07289 asmA; AsmA protein
D DK55_3178 hypothetical protein K07340 ybbJ; inner membrane protein
D DK55_2735 efflux transporter, RND family, MFP subunit K01993 ABC-2.TX; HlyD family secretion protein
D DK55_1344 efflux transporter, RND family, MFP subunit K01993 ABC-2.TX; HlyD family secretion protein
D DK55_635 ccmE family protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D DK55_634 ccmI; cytochrome c-type biogenesis protein CcmI K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D DK55_637 cytochrome C biogenesis family protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
C 99994 Others
D DK55_2075 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D DK55_353 hypothetical protein K06195 apaG; ApaG protein
D DK55_2873 nosD; nitrous oxide reductase maturation NosD family protein K07218 nosD; nitrous oxidase accessory protein
D DK55_2866 nnrS family protein K07234 K07234; uncharacterized protein involved in response to NO
D DK55_2870 nosL; nosL K19342 nosL; copper chaperone NosL
B
B 09194 Poorly characterized
C 99996 General function prediction only
D DK55_482 colicin V production family protein K03558 cvpA; membrane protein required for colicin V production
D DK55_146 acetyltransferase domain protein K02348 elaA; ElaA protein
D DK55_1498 csaA; export-related chaperone CsaA family protein K06878 K06878; tRNA-binding protein
D DK55_2330 putative hemoglobin K06886 glbN; hemoglobin
D DK55_2199 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D DK55_1082 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D DK55_2931 HAD hydrolase, IA, variant 3 family protein K07025 K07025; putative hydrolase of the HAD superfamily
D DK55_3074 HAD hydrolase, IA, variant 3 family protein K07025 K07025; putative hydrolase of the HAD superfamily
D DK55_936 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D DK55_938 sufD; FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D DK55_1914 virulence factor BrkB family protein K07058 K07058; membrane protein
D DK55_2007 fxsA cytoplasmic membrane family protein K07113 fxsA; UPF0716 protein FxsA
D DK55_602 fe-S metabolism associated domain protein K02426 sufE; cysteine desulfuration protein SufE
D DK55_3190 rhodanese-like domain protein K07146 K07146; UPF0176 protein
D DK55_1770 lemA family protein K03744 lemA; LemA protein
D DK55_2970 slyX family protein K03745 slyX; SlyX protein
D DK55_1399 creA family protein K05805 creA; CreA protein
D DK55_1768 TLP18.3, Psb32 and MOLO-1 founding s of phosphatase family protein K08988 K08988; putative membrane protein
D DK55_1038 hypothetical protein K08990 ycjF; putative membrane protein
D DK55_715 type III secretion system lipochaperone family protein K09914 K09914; putative lipoprotein
D DK55_1445 phnA family protein K06193 phnA; protein PhnA
C 99997 Function unknown
D DK55_1769 TLP18.3, Psb32 and MOLO-1 founding s of phosphatase family protein K06872 K06872; uncharacterized protein
D DK55_1996 hypothetical protein K06888 K06888; uncharacterized protein
D DK55_79 prolyl oligopeptidase family protein K06889 K06889; uncharacterized protein
D DK55_106 inhibitor of apoptosis-promoting Bax1 family protein K06890 K06890; uncharacterized protein
D DK55_1039 hypothetical protein K06918 K06918; uncharacterized protein
D DK55_899 ATPase associated with various cellular activities family protein K06923 K06923; uncharacterized protein
D DK55_2398 hypothetical protein K06953 K06953; uncharacterized protein
D DK55_1561 GCN5-related N-acetyl-transferase family protein K06975 K06975; uncharacterized protein
D DK55_337 succinylglutamate desuccinylase / Aspartoacylase family protein K06987 K06987; uncharacterized protein
D DK55_530 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K06996 K06996; uncharacterized protein
D DK55_2717 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K06996 K06996; uncharacterized protein
D DK55_1363 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein
D DK55_934 dienelactone hydrolase family protein K07018 K07018; uncharacterized protein
D DK55_2654 yecA family protein K07039 K07039; uncharacterized protein
D DK55_1466 neutral zinc metallopeptidase family protein K07054 K07054; uncharacterized protein
D DK55_2545 FAD binding domain protein K07077 K07077; uncharacterized protein
D DK55_2704 nitroreductase family protein K07078 K07078; uncharacterized protein
D DK55_1194 TRAP transporter solute receptor, TAXI family protein K07080 K07080; uncharacterized protein
D DK55_3085 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D DK55_2400 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D DK55_1300 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D DK55_2546 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D DK55_2739 sulfur transport family protein K07112 K07112; uncharacterized protein
D DK55_2740 sulfur transport family protein K07112 K07112; uncharacterized protein
D DK55_656 putative cytoplasmic protein K07126 K07126; uncharacterized protein
D DK55_1673 sel1 repeat family protein K07126 K07126; uncharacterized protein
D DK55_2335 ATP-dependent protease La domain protein K07157 K07157; uncharacterized protein
D DK55_1078 putative membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein
D DK55_1261 hypothetical protein K09005 K09005; uncharacterized protein
D DK55_1464 yqey-like family protein K09117 K09117; uncharacterized protein
D DK55_2403 hypothetical protein K09137 K09137; uncharacterized protein
D DK55_1459 putative zinc-/iron-chelating domain protein K09160 K09160; uncharacterized protein
D DK55_335 polyketide cyclase / dehydrase and lipid transport family protein K09386 K09386; uncharacterized protein
D DK55_1683 hypothetical protein K09706 K09706; uncharacterized protein
D DK55_1915 hypothetical protein K09768 K09768; uncharacterized protein
D DK55_1834 YCII-related domain protein K09780 K09780; uncharacterized protein
D DK55_2742 hypothetical protein K09781 K09781; uncharacterized protein
D DK55_2070 hypothetical protein K09790 K09790; uncharacterized protein
D DK55_2337 trm112p-like family protein K09791 K09791; uncharacterized protein
D DK55_2167 hypothetical protein K09794 K09794; uncharacterized protein
D DK55_3161 hypothetical protein K09795 K09795; uncharacterized protein
D DK55_1446 integral membrane TerC family protein K09799 K09799; uncharacterized protein
D DK55_983 hypothetical protein K09803 K09803; uncharacterized protein
D DK55_1457 bp26; 26 kDa periplasmic immunogenic protein K09807 K09807; uncharacterized protein
D DK55_298 hypothetical protein K09862 K09862; uncharacterized protein
D DK55_1171 acetyltransferase domain protein K09919 K09919; uncharacterized protein
D DK55_1485 hypothetical protein K09922 K09922; uncharacterized protein
D DK55_1016 hypothetical protein K09924 K09924; uncharacterized protein
D DK55_679 hypothetical protein K09928 K09928; uncharacterized protein
D DK55_1381 hypothetical protein K09937 K09937; uncharacterized protein
D DK55_1275 hypothetical protein K09956 K09956; uncharacterized protein
D DK55_218 hypothetical protein K09959 K09959; uncharacterized protein
D DK55_1860 traB family protein K09973 K09973; uncharacterized protein
D DK55_2294 hutD family protein K09975 K09975; uncharacterized protein
D DK55_1389 hypothetical protein K09985 K09985; uncharacterized protein
D DK55_1528 hypothetical protein K09986 K09986; uncharacterized protein
D DK55_1698 hypothetical protein K09987 K09987; uncharacterized protein
D DK55_951 hypothetical protein K09991 K09991; uncharacterized protein
D DK55_2094 hypothetical protein K07742 ylxR; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 16, 2024