+D GENES KO
#
KEGG Orthology (KO) - Bifidobacterium bifidum S17
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:bbi00010]
D BBIF_1369 glk2; glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0999 sugar kinase, ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0396 Conserved hypothetical protein, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0363 gpi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BBIF_0175 fba; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D BBIF_0981 tpi; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D BBIF_0612 gap; gap Glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D BBIF_0982 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D BBIF_1032 gpm3; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BBIF_1433 gpm5; phosphoglycerate mutase 1 family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BBIF_0742 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BBIF_0777 pyk; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BBIF_0721 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BBIF_0564 ldh2; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BBIF_0979 ldh3; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BBIF_1509 adh3; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D BBIF_0901 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D BBIF_1321 aldH; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D BBIF_0608 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D BBIF_1459 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BBIF_0700 ppgK; polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D BBIF_1358 glucose-6-phosphate 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D BBIF_1657 bglA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
C 00020 Citrate cycle (TCA cycle) [PATH:bbi00020]
D BBIF_1333 gltA; citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1]
D BBIF_0644 acn; Aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D BBIF_1018 icdA; isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D BBIF_0721 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BBIF_0954 sucD; Succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D BBIF_0955 sucC; Succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D BBIF_1167 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D BBIF_1171 sdhB; Succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
C 00030 Pentose phosphate pathway [PATH:bbi00030]
D BBIF_0363 gpi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BBIF_1447 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D BBIF_1445 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D BBIF_1443 gnt; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D BBIF_0944 rpe1; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D BBIF_0972 tkt; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D BBIF_0973 tal; Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D BBIF_1463 rpi; Ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D BBIF_0798 Xylulose-5-phosphate/Fructose-6-phosphate phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D BBIF_1459 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BBIF_0286 prsA1; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D BBIF_1065 prsA2; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D BBIF_0175 fba; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
C 00040 Pentose and glucuronate interconversions [PATH:bbi00040]
D BBIF_0924 ugpA; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BBIF_0375 gntK; gluconokinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D BBIF_0376 sgbU; hexulose-6-phosphate somerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D BBIF_0377 rpe; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D BBIF_0944 rpe1; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:bbi00051]
D BBIF_0586 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D BBIF_0175 fba; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D BBIF_0981 tpi; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 00052 Galactose metabolism [PATH:bbi00052]
D BBIF_0608 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D BBIF_0432 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D BBIF_0431 galT1; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D BBIF_0996 galT2; Galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D BBIF_1400 galE2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BBIF_0995 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BBIF_0924 ugpA; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BBIF_1459 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BBIF_1369 glk2; glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0999 sugar kinase, ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0396 Conserved hypothetical protein, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0507 beta-galactosidase BbgIII K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BBIF_1406 lacZ3; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BBIF_0188 lacZ1; beta-galactosidase P1 K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BBIF_1313 lacZ2; Beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D BBIF_1683 gif; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D BBIF_1754 aga; Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D BBIF_0374 gatC1; putative PTS system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
D BBIF_1345 agl; alpha-1,4-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:bbi00053]
D BBIF_0025 PTS system, ascorbate-specific IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D BBIF_0026 PTS system, ascorbate-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D BBIF_0027 PTS system, ascorbate-specific IIC componet K03475 ulaA; ascorbate PTS system EIIC component
D BBIF_0376 sgbU; hexulose-6-phosphate somerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D BBIF_0377 rpe; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D BBIF_0375 gntK; gluconokinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D BBIF_1321 aldH; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:bbi00500]
D BBIF_1345 agl; alpha-1,4-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D BBIF_0924 ugpA; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BBIF_1658 celA; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D BBIF_1659 celB; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D BBIF_1660 celC; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D BBIF_1657 bglA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D BBIF_0849 glgC; Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D BBIF_0766 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D BBIF_0126 glgP1; glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D BBIF_1060 cyclomaltodextrinase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D BBIF_1514 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D BBIF_1599 Alpha-amylase family protein K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D BBIF_0875 Glycosyltransferase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D BBIF_0261 crr; PTS system, glucose-specific IIA component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D BBIF_0783 glgX1; Glycogen operon protein glgX K01214 ISA; isoamylase [EC:3.2.1.68]
D BBIF_1511 glgX2; glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D BBIF_1459 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BBIF_1369 glk2; glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0999 sugar kinase, ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0396 Conserved hypothetical protein, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0363 gpi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BBIF_0586 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:bbi00520]
D BBIF_0727 conserved hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D BBIF_1382 conserved hypothetical protein containing bacterial Ig-like domain (group 2) K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BBIF_1476 conserved hypothetical protein containing bacterial Ig-like domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BBIF_0963 nagZ; beta_N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BBIF_0262 nagE; PTS system, N-acetylglucosamine-specific IIC subunit K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D BBIF_0591 nagA1; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D BBIF_0590 nagB; glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D BBIF_0586 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D BBIF_0465 mrsA; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D BBIF_1064 glmU; UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D BBIF_0239 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D BBIF_1521 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D BBIF_0397 N-acylglucosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D BBIF_0734 putative nucleotide sugar dehydratase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D BBIF_1369 glk2; glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0999 sugar kinase, ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0396 Conserved hypothetical protein, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0700 ppgK; polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D BBIF_1459 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BBIF_0924 ugpA; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BBIF_0432 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D BBIF_0431 galT1; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D BBIF_0996 galT2; Galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D BBIF_1400 galE2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BBIF_0995 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BBIF_1683 gif; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D BBIF_0363 gpi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BBIF_0849 glgC; Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:bbi00620]
D BBIF_0721 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BBIF_1184 pfl; Formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D BBIF_1509 adh3; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D BBIF_0901 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D BBIF_0788 ack; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D BBIF_0789 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D BBIF_0777 pyk; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BBIF_1581 accC; Acetyl-/propionyl-CoA carboxylase alpha chain K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D BBIF_0300 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D BBIF_1321 aldH; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D BBIF_0564 ldh2; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BBIF_0979 ldh3; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BBIF_0038 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D BBIF_1685 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:bbi00630]
D BBIF_1333 gltA; citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1]
D BBIF_0644 acn; Aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D BBIF_1581 accC; Acetyl-/propionyl-CoA carboxylase alpha chain K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D BBIF_0929 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D BBIF_0556 glnA1; glutamine synthetase type I, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BBIF_0719 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BBIF_0721 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BBIF_0420 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D BBIF_1326 glxK; Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D BBIF_1397 fucO; Lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
C 00640 Propanoate metabolism [PATH:bbi00640]
D BBIF_0788 ack; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D BBIF_0789 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D BBIF_0721 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BBIF_1184 pfl; Formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D BBIF_1581 accC; Acetyl-/propionyl-CoA carboxylase alpha chain K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D BBIF_0955 sucC; Succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D BBIF_0954 sucD; Succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D BBIF_0564 ldh2; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BBIF_0979 ldh3; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BBIF_1397 fucO; Lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
C 00650 Butanoate metabolism [PATH:bbi00650]
D BBIF_1509 adh3; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D BBIF_1167 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D BBIF_1171 sdhB; Succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D BBIF_1184 pfl; Formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D BBIF_0356 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D BBIF_0357 ilvN; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D BBIF_1508 aldB; Alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
C 00660 C5-Branched dibasic acid metabolism [PATH:bbi00660]
D BBIF_0356 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D BBIF_0357 ilvN; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D BBIF_1508 aldB; Alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D BBIF_0955 sucC; Succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D BBIF_0954 sucD; Succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D BBIF_0233 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D BBIF_0234 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D BBIF_0424 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:bbi00562]
D BBIF_0656 Inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D BBIF_1355 iolG; myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D BBIF_0981 tpi; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:bbi00190]
D BBIF_1167 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D BBIF_1171 sdhB; Succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D BBIF_1590 atpA; ATP synthase alpha chain K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D BBIF_1588 atpD; ATP synthase beta chain K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D BBIF_1589 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D BBIF_1591 atpH; ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D BBIF_1587 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D BBIF_1594 atpB; ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D BBIF_1592 atpF; ATP synthase B chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D BBIF_1593 atpE; ATP synthase C chain K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D BBIF_1600 ppa; Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D BBIF_1705 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:bbi00680]
D BBIF_0742 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BBIF_0038 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D BBIF_0175 fba; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D BBIF_0788 ack; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D BBIF_0789 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D BBIF_1032 gpm3; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BBIF_1433 gpm5; phosphoglycerate mutase 1 family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BBIF_0569 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BBIF_1428 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D BBIF_0653 serB1; Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:bbi00910]
D BBIF_0019 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D BBIF_0556 glnA1; glutamine synthetase type I, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BBIF_0719 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BBIF_0872 gltB; Glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D BBIF_0873 gltD; Glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D BBIF_0033 icfA; Carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:bbi00920]
D BBIF_1595 metA; Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D BBIF_1301 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D BBIF_1569 cystathionine gamma lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:bbi00061]
D BBIF_1581 accC; Acetyl-/propionyl-CoA carboxylase alpha chain K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D BBIF_1579 fas; Type I multifunctional fatty acid synthase K11533 fas; fatty acid synthase, bacteria type [EC:2.3.1.-]
D BBIF_0254 3-oxoacyl-(acil-carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BBIF_1020 fadD5; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0857 fadD3; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0382 fadD2; fadD1 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0315 fadD1; fadD1 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_1015 fadD4; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:bbi00071]
D BBIF_1020 fadD5; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0857 fadD3; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0382 fadD2; fadD1 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0315 fadD1; fadD1 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_1015 fadD4; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_1509 adh3; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D BBIF_0901 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D BBIF_1321 aldH; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:bbi00121]
D BBIF_0879 cbh; Choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:bbi00561]
D BBIF_1326 glxK; Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D BBIF_1321 aldH; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D BBIF_1082 Haloacid dehalogenase-like hydrolase (HAD superfamily) K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]
D BBIF_1220 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D BBIF_1394 N-acetylglucosaminyltransferase K19003 mgdA; 1,2-diacylglycerol 3-beta-glucosyltransferase [EC:2.4.1.336]
D BBIF_1754 aga; Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:bbi00564]
D BBIF_0282 gpsA; Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D BBIF_1220 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D BBIF_0145 pldB Lysophospholipase K01048 pldB; lysophospholipase [EC:3.1.1.5]
D BBIF_0258 glpQ1; glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D BBIF_1008 cdsA; Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D BBIF_1231 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D BBIF_0941 pgsA1; CDP-diacylglycerol--glycerol-3-phosphate-3-phosph atidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:bbi00600]
D BBIF_0507 beta-galactosidase BbgIII K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BBIF_1406 lacZ3; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BBIF_0188 lacZ1; beta-galactosidase P1 K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BBIF_1734 sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D BBIF_1733 sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D BBIF_1754 aga; Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D BBIF_1382 conserved hypothetical protein containing bacterial Ig-like domain (group 2) K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BBIF_1476 conserved hypothetical protein containing bacterial Ig-like domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BBIF_0963 nagZ; beta_N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids [PATH:bbi01040]
D BBIF_1537 putative GDSL-like Lipase/Acylhydrolase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D BBIF_1383 tesB; Acyl-CoA thioesterase K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:bbi00230]
D BBIF_0778 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D BBIF_0782 Phosphohydrolase, MutT/nudix family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D BBIF_1459 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BBIF_0286 prsA1; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D BBIF_1065 prsA2; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D BBIF_1268 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D BBIF_1270 purD; phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D BBIF_1258 purT; Phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D BBIF_1260 purL; Phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D BBIF_1269 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D BBIF_1286 purK; Phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D BBIF_1287 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D BBIF_1259 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D BBIF_0661 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D BBIF_0952 purH; Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D BBIF_0956 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D BBIF_1452 conserved hypothetical protein with the 5'-nucleotidase domain K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D BBIF_1560 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D BBIF_1389 hprT; Hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D BBIF_1346 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D BBIF_1017 guaB1; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D BBIF_0361 nucleoside-triphosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D BBIF_0821 xpt; Xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D BBIF_0797 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D BBIF_0348 amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D BBIF_1567 nrdE; Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BBIF_1568 nrdF; Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D BBIF_0478 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D BBIF_1294 dgt; Deoxyguanosinetriphosphate triphosphohydrolase (dGTPase) K01129 dgt; dGTPase [EC:3.1.5.1]
D BBIF_1205 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D BBIF_0745 Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D BBIF_0470 ppx; Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D BBIF_1236 putative relA2 GTP pyrophosphokinase K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D BBIF_0250 conserved hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D BBIF_0178 purA; Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D BBIF_1483 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00240 Pyrimidine metabolism [PATH:bbi00240]
D BBIF_1244 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D BBIF_1245 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D BBIF_0893 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D BBIF_0894 pyrI; Aspartate carbamoyltransferase regulatory subunit 1 K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D BBIF_0895 pyrC; Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D BBIF_0898 pyrD1; Dihydroorotate dehydrogenase, catalytic subunit K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D BBIF_0238 dihydroorotate dehydrogenase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D BBIF_0897 pyrK; Dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D BBIF_0429 pyrD2; Dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D BBIF_0899 pyrE; Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D BBIF_1243 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D BBIF_0896 pyrF1; Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D BBIF_1010 pyrH; Uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D BBIF_0265 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D BBIF_0842 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D BBIF_1452 conserved hypothetical protein with the 5'-nucleotidase domain K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D BBIF_0194 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D BBIF_0478 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D BBIF_1753 dcd Deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D BBIF_1567 nrdE; Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BBIF_1568 nrdF; Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D BBIF_1678 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D BBIF_1206 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BBIF_1423 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:bbi00250]
D BBIF_0278 aspC1; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0311 yhdR; aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0624 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D BBIF_0601 aspA; aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D BBIF_1156 L-asparagineamidohydrolase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D BBIF_0870 Aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D BBIF_1214 ansB; Aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D BBIF_1097 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D BBIF_1089 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D BBIF_0178 purA; Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D BBIF_0661 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D BBIF_0893 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D BBIF_0894 pyrI; Aspartate carbamoyltransferase regulatory subunit 1 K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D BBIF_0872 gltB; Glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D BBIF_0873 gltD; Glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D BBIF_0019 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D BBIF_0556 glnA1; glutamine synthetase type I, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BBIF_0719 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BBIF_1244 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D BBIF_1245 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D BBIF_1268 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:bbi00260]
D BBIF_1693 askA; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D BBIF_1690 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BBIF_0263 thrA; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D BBIF_0264 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D BBIF_1069 thrC; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D BBIF_1255 low specificity-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D BBIF_1326 glxK; Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D BBIF_1032 gpm3; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BBIF_1433 gpm5; phosphoglycerate mutase 1 family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BBIF_0569 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BBIF_1428 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D BBIF_0653 serB1; Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D BBIF_0721 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BBIF_0420 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D BBIF_1302 cysK; cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D BBIF_0747 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D BBIF_1749 tdcB; Threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D BBIF_0946 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D BBIF_0947 trpBC; TrpB/TrpC bifunctional protein, includes tryptophan synthase beta chain and indole-3-glycerol phosphate synthase K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:bbi00270]
D BBIF_1324 metC; Cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BBIF_1175 aspartate aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BBIF_1302 cysK; cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D BBIF_0889 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D BBIF_0648 metK; metK S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D BBIF_1549 pfs; 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D BBIF_1560 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D BBIF_1150 aminotransferase, class I and II K08969 mtnE; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117]
D BBIF_1299 luxS; Autoinducer-2 production protein LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D BBIF_1693 askA; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D BBIF_1690 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BBIF_0263 thrA; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D BBIF_1595 metA; Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D BBIF_1301 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D BBIF_1569 cystathionine gamma lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D BBIF_1164 metY1; O-acetylhomoserine (thiol)-lyase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D BBIF_1323 Cysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D BBIF_1366 O-acetylhomoserine (thiol)-lyase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D BBIF_0863 ilvE2; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BBIF_0482 gshA; glutamate-cysteine ligase, GCS2 K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D BBIF_0278 aspC1; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0311 yhdR; aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0564 ldh2; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BBIF_0979 ldh3; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BBIF_0747 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D BBIF_0569 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BBIF_1428 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:bbi00280]
D BBIF_0863 ilvE2; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BBIF_0721 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BBIF_1581 accC; Acetyl-/propionyl-CoA carboxylase alpha chain K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D BBIF_1321 aldH; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:bbi00290]
D BBIF_1749 tdcB; Threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D BBIF_0233 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D BBIF_0234 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D BBIF_0424 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D BBIF_0356 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D BBIF_0357 ilvN; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D BBIF_0185 ilvC1; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D BBIF_0186 ilvC2; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D BBIF_0646 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D BBIF_0863 ilvE2; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BBIF_0870 Aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D BBIF_1685 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:bbi00300]
D BBIF_0263 thrA; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D BBIF_1693 askA; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D BBIF_1690 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BBIF_0460 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D BBIF_0459 dapB; Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D BBIF_0518 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D BBIF_1100 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D BBIF_0271 putative peptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D BBIF_0491 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D BBIF_0260 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D BBIF_0605 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D BBIF_0576 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:bbi00310]
D BBIF_0721 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BBIF_1321 aldH; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:bbi00220]
D BBIF_1099 argF; Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D BBIF_1097 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D BBIF_1089 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D BBIF_0556 glnA1; glutamine synthetase type I, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BBIF_0719 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BBIF_0019 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D BBIF_0278 aspC1; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0311 yhdR; aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0870 Aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D BBIF_1102 argJ; Glutamate N-acetyltransferase/Amino-acid acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D BBIF_1101 argB; Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D BBIF_1103 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D BBIF_1100 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:bbi00330]
D BBIF_1321 aldH; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D BBIF_1157 proC; Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D BBIF_0277 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D BBIF_1068 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D BBIF_0278 aspC1; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0311 yhdR; aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:bbi00340]
D BBIF_0942 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D BBIF_0943 hisE; phosphoribosyl-ATP pyrophosphohydrolase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D BBIF_1005 hisI; Phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D BBIF_0554 hisA; hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylidenea mino] imidazole-4-carboxamide isomerase K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D BBIF_0553 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D BBIF_1006 hisF; Imidazole glycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D BBIF_0551 hisB; Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D BBIF_0550 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D BBIF_0549 hisD; Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D BBIF_1321 aldH; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:bbi00350]
D BBIF_0278 aspC1; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0311 yhdR; aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0550 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D BBIF_1509 adh3; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D BBIF_0901 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C 00360 Phenylalanine metabolism [PATH:bbi00360]
D BBIF_0278 aspC1; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0311 yhdR; aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0550 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism [PATH:bbi00380]
D BBIF_0721 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BBIF_1321 aldH; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:bbi00400]
D BBIF_1550 aroG1; 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D BBIF_1554 aroG2; 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D BBIF_0837 aroB; Shikimate kinase/3-dehydroquinate synthase K13829 aroKB; shikimate kinase / 3-dehydroquinate synthase [EC:2.7.1.71 4.2.3.4]
D BBIF_0838 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D BBIF_0787 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D BBIF_0836 aroC; Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D BBIF_1004 trpE; Anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D BBIF_1222 trpD; Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D BBIF_0554 hisA; hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylidenea mino] imidazole-4-carboxamide isomerase K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D BBIF_0946 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D BBIF_0947 trpBC; TrpB/TrpC bifunctional protein, includes tryptophan synthase beta chain and indole-3-glycerol phosphate synthase K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D BBIF_1608 tyrA2; Chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5]
D BBIF_0629 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D BBIF_0630 tyrA1; Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D BBIF_0278 aspC1; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0311 yhdR; aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0550 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
D BBIF_1321 aldH; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00430 Taurine and hypotaurine metabolism [PATH:bbi00430]
D BBIF_0789 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D BBIF_0788 ack; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:bbi00450]
D BBIF_1301 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D BBIF_1569 cystathionine gamma lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D BBIF_1324 metC; Cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BBIF_1175 aspartate aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BBIF_0889 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D BBIF_0846 iscS; Cysteine desulfurase/Selenocysteine lyase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D BBIF_0035 trxB1; Thioredoxin reductase/Thioredoxin/Glutaredoxin family protein K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D BBIF_1777 trxB2; Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D BBIF_1727 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism
D BBIF_1156 L-asparagineamidohydrolase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
C 00470 D-Amino acid metabolism [PATH:bbi00470]
D BBIF_1295 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D BBIF_0283 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BBIF_0490 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D BBIF_0578 murD1; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D BBIF_0601 aspA; aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D BBIF_0491 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D BBIF_0260 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:bbi00480]
D BBIF_0482 gshA; glutamate-cysteine ligase, GCS2 K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D BBIF_0462 pepN; Membrane alanine aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D BBIF_1018 icdA; isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D BBIF_1443 gnt; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D BBIF_1447 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:bbi00511]
D BBIF_1734 sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D BBIF_1733 sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D BBIF_0507 beta-galactosidase BbgIII K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BBIF_1406 lacZ3; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BBIF_0188 lacZ1; beta-galactosidase P1 K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D BBIF_1382 conserved hypothetical protein containing bacterial Ig-like domain (group 2) K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BBIF_1476 conserved hypothetical protein containing bacterial Ig-like domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BBIF_0963 nagZ; beta_N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BBIF_1317 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D BBIF_0215 cell wall protein containing Ig-like domains (group2 and 3) K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:bbi00542]
D BBIF_1347 rfe; Undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:bbi00541]
D BBIF_0924 ugpA; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D BBIF_1400 galE2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BBIF_0995 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D BBIF_1683 gif; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D BBIF_0058 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BBIF_0046 rmlB1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BBIF_0051 rmlB2; dTDP-glucose 4,6-dehydratase involved rhamnose biosynthesis K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BBIF_0053 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
D BBIF_1064 glmU; UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:bbi00550]
D BBIF_0239 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D BBIF_1521 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D BBIF_0581 murC; UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D BBIF_0578 murD1; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D BBIF_0605 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D BBIF_0283 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BBIF_0576 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D BBIF_0534 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D BBIF_0968 bacA; Bacitracin resistance protein (putative undecaprenol kinase) K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BBIF_0577 murX; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D BBIF_0580 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D BBIF_0574 fts1; Peptidoglycan synthetase FtsI, penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D BBIF_0137 pbp1; Penicillin binding transpeptidase K05364 pbpA; penicillin-binding protein A
D BBIF_1391 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D BBIF_0993 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D BBIF_1629 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D BBIF_1628 CobB/CobQ domain protein glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:bbi00552]
D BBIF_0968 bacA; Bacitracin resistance protein (putative undecaprenol kinase) K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BBIF_1347 rfe; Undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D BBIF_0411 Transcriptional regulator containing cell envelope-related transcriptional attenuator domain K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D BBIF_0729 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase K18704 tarL; CDP-ribitol ribitolphosphotransferase / teichoic acid ribitol-phosphate polymerase [EC:2.7.8.14 2.7.8.47]
D BBIF_0730 glycosyl/glycerophosphate transferase K18704 tarL; CDP-ribitol ribitolphosphotransferase / teichoic acid ribitol-phosphate polymerase [EC:2.7.8.14 2.7.8.47]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:bbi00543]
D BBIF_1347 rfe; Undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:bbi00730]
D BBIF_0505 thiE; Thiamine biosynthesis protein thiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D BBIF_0502 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D BBIF_0626 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D BBIF_1289 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D BBIF_1713 thiG; Thiazole biosynthesis protein ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D BBIF_0506 thiM; Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D BBIF_1740 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D BBIF_0613 Thiamin pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D BBIF_1483 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:bbi00740]
D BBIF_1466 ribF; riboflavin kinase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D BBIF_1745 Nitroreductase family protein K19285 nfrA1; FMN reductase (NADPH) [EC:1.5.1.38]
D BBIF_0506 thiM; Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D BBIF_0778 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D BBIF_0782 Phosphohydrolase, MutT/nudix family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:bbi00750]
D BBIF_1166 pdxK; Pyridoxine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D BBIF_1564 Oxidoreductase, aldo/keto reductase family K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65]
D BBIF_1428 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D BBIF_1069 thrC; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D BBIF_0383 pdxS; pyridoxine biosynthesis protein K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D BBIF_0384 pdxT; glutamine amidotransferase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:bbi00760]
D BBIF_0624 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D BBIF_0623 nadA; Quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D BBIF_0625 nadC; Nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D BBIF_0359 pncB; pncB Nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D BBIF_1452 conserved hypothetical protein with the 5'-nucleotidase domain K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D BBIF_1066 nadD; Nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D BBIF_0418 Phosphohydrolase (MutT/nudix family protein) K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D BBIF_1186 nadE; Glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D BBIF_1230 cinA; Competence-damage protein cinA K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D BBIF_0816 pncA; Pyrazinamidase/Nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D BBIF_1748 Sir2 (silent information regulator)-like protein K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D BBIF_1076 ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D BBIF_0858 pntA1; NAD(P) transhydrogenase subunit alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D BBIF_0859 pntA2; NAD(P) transhydrogenase alpha2 subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D BBIF_0860 pntB; NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
C 00770 Pantothenate and CoA biosynthesis [PATH:bbi00770]
D BBIF_0356 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D BBIF_0357 ilvN; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D BBIF_0185 ilvC1; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D BBIF_0186 ilvC2; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D BBIF_0646 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D BBIF_1310 coaX; type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D BBIF_0351 coaD; Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D BBIF_0774 coaE; Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D BBIF_1578 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D BBIF_0863 ilvE2; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BBIF_1321 aldH; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:bbi00780]
D BBIF_0254 3-oxoacyl-(acil-carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BBIF_1577 Conserved hypothetical protein with possible biotin-(acetyl-CoA carboxylase) ligase domain K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BBIF_1583 Biotin-(acetil-CoA-carboxilase)-ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:bbi00785]
D BBIF_0425 lplA; Lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D BBIF_0721 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BBIF_0420 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:bbi00790]
D BBIF_1387 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D BBIF_1740 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D BBIF_1385 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K13940 sulD; dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.2.25 2.7.6.3]
D BBIF_1386 folP; Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D BBIF_1422 dfrA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D BBIF_0599 folC; Folylpolyglutamate synthase/Dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D BBIF_0134 pabA; Para-aminobenzoate synthase glutamine amidotransferase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D BBIF_0740 pabB; para-aminobenzoate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
C 00670 One carbon pool by folate [PATH:bbi00670]
D BBIF_1422 dfrA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D BBIF_0218 fhs; Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D BBIF_0772 folD; Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D BBIF_0952 purH; Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D BBIF_0652 fmt; fmt Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D BBIF_1423 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D BBIF_0890 metF; Methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D BBIF_1528 conserved hypothetical protein, belonging to the 5-formyltetrahydrofolate cyclo-ligase family K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism
D BBIF_0228 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:bbi00130]
D BBIF_1434 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D BBIF_1053 Conserved hypothetical protein K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:bbi00900]
D BBIF_1289 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D BBIF_0530 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D BBIF_1559 ispD2; 4-diphosphocytidyl-2-methyl-D-erythritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D BBIF_1771 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D BBIF_0768 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D BBIF_0531 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase with GcpE domain K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D BBIF_0609 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D BBIF_1218 Polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D BBIF_0534 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D BBIF_1321 aldH; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D BBIF_0972 tkt; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:bbi00523]
D BBIF_0058 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BBIF_0046 rmlB1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BBIF_0051 rmlB2; dTDP-glucose 4,6-dehydratase involved rhamnose biosynthesis K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BBIF_0053 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 01054 Nonribosomal peptide structures [PATH:bbi01054]
D BBIF_0601 aspA; aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D BBIF_0046 rmlB1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BBIF_0051 rmlB2; dTDP-glucose 4,6-dehydratase involved rhamnose biosynthesis K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D BBIF_1524 putative beta-lactamase (class A) precursor K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D BBIF_1359 ampC; Beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:bbi00332]
D BBIF_0277 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D BBIF_1068 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:bbi00261]
D BBIF_1693 askA; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D BBIF_1690 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D BBIF_0460 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D BBIF_0459 dapB; Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:bbi00521]
D BBIF_1369 glk2; glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0999 sugar kinase, ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0396 Conserved hypothetical protein, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_1459 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D BBIF_0656 Inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D BBIF_1355 iolG; myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D BBIF_0058 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BBIF_0046 rmlB1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BBIF_0051 rmlB2; dTDP-glucose 4,6-dehydratase involved rhamnose biosynthesis K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BBIF_0053 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D BBIF_1369 glk2; glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0999 sugar kinase, ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D BBIF_0396 Conserved hypothetical protein, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:bbi00525]
D BBIF_0058 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D BBIF_0046 rmlB1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D BBIF_0051 rmlB2; dTDP-glucose 4,6-dehydratase involved rhamnose biosynthesis K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:bbi00401]
D BBIF_0630 tyrA1; Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D BBIF_0278 aspC1; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0311 yhdR; aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0550 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D BBIF_1004 trpE; Anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D BBIF_0254 3-oxoacyl-(acil-carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
C 00999 Biosynthesis of various plant secondary metabolites
D BBIF_0648 metK; metK S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D BBIF_0922 putative carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
C 00627 Aminobenzoate degradation
D BBIF_0300 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:bbi00625]
D BBIF_0901 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D BBIF_1509 adh3; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D BBIF_1321 aldH; aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D BBIF_0651 HAD-superfamily hydrolase, subfamily IA, variant 3 K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation
D BBIF_0651 HAD-superfamily hydrolase, subfamily IA, variant 3 K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:bbi00626]
D BBIF_0901 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D BBIF_1509 adh3; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:bbi03020]
D BBIF_0442 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D BBIF_0443 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D BBIF_1478 rpoA; rpoA DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D BBIF_0647 rpoZ; DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:bbi03010]
D BBIF_0773 rpsA; SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1
D BBIF_1013 rpsB; SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D BBIF_1498 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D BBIF_0827 rpsD; SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D BBIF_1487 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D BBIF_0290 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D BBIF_1253 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D BBIF_1490 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D BBIF_1512 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D BBIF_1505 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D BBIF_1479 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D BBIF_1254 rpsL; rpsL SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D BBIF_1480 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D BBIF_1491 rpsN2; 30S ribosomal protein S14-1 K02954 RP-S14; small subunit ribosomal protein S14
D BBIF_1278 rpsN1; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D BBIF_1574 rpsO; rpsO SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D BBIF_0341 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D BBIF_1495 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D BBIF_0292 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D BBIF_1500 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D BBIF_0866 rpsT; SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D BBIF_0244 rlpA; large subunit ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D BBIF_1501 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D BBIF_1504 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D BBIF_1503 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D BBIF_1492 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D BBIF_1489 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D BBIF_1535 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D BBIF_0293 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D BBIF_1536 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D BBIF_0243 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D BBIF_1513 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D BBIF_1494 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D BBIF_1485 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D BBIF_1497 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D BBIF_1477 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D BBIF_1488 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D BBIF_0378 rplS; rplS LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19
D BBIF_0617 rplT; LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D BBIF_0273 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D BBIF_1499 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D BBIF_1502 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D BBIF_1493 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D BBIF_0862 rplY; LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25
D BBIF_0274 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D BBIF_0328 rpmB1; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D BBIF_1277 rpmB2; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D BBIF_1496 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D BBIF_1486 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D BBIF_1352 rpmE2; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D BBIF_1279 rpmE1; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D BBIF_0354 rpmF1; rpmF LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32
D BBIF_1281 rpmF2; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D BBIF_1522 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D BBIF_1783 rpmH; LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D BBIF_0616 rpmI; rpmI LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D BBIF_1481 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D BBIF_1280 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D BBIF_1rRNA16S 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BBIF_2rRNA16S 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BBIF_3rRNA16S 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BBIF_1rRNA23S 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BBIF_3rRNA23S 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BBIF_2rRNA23S 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BBIF_3rRNA5S 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BBIF_1rRNA5S 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BBIF_2rRNA5S 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:bbi00970]
D BBIF_tRNA15 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BBIF_tRNA31 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BBIF_tRNA52 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BBIF_tRNA1 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BBIF_tRNA9 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BBIF_tRNA34 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BBIF_tRNA33 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BBIF_tRNA36 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BBIF_tRNA18 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BBIF_tRNA30 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D BBIF_tRNA38 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D BBIF_tRNA40 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D BBIF_tRNA28 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D BBIF_tRNA8 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D BBIF_tRNA32 tRNA-Glu K14223 tRNA-Gln; tRNA Gln
D BBIF_tRNA7 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BBIF_tRNA41 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BBIF_tRNA5 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BBIF_tRNA25 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BBIF_tRNA29 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BBIF_tRNA12 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BBIF_tRNA49 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BBIF_tRNA35 tRNA-His K14226 tRNA-His; tRNA His
D BBIF_tRNA2 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D BBIF_tRNA4 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BBIF_tRNA20 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BBIF_tRNA16 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BBIF_tRNA21 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BBIF_tRNA23 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BBIF_tRNA11 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BBIF_tRNA51 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BBIF_tRNA50 tRNA-Met K14230 tRNA-Met; tRNA Met
D BBIF_tRNA37 tRNA-Met K14230 tRNA-Met; tRNA Met
D BBIF_tRNA46 tRNA-Met K14230 tRNA-Met; tRNA Met
D BBIF_tRNA39 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D BBIF_tRNA22 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BBIF_tRNA24 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BBIF_tRNA42 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BBIF_tRNA43 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BBIF_tRNA6 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BBIF_tRNA45 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BBIF_tRNA44 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BBIF_tRNA17 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BBIF_tRNA53 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BBIF_tRNA47 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BBIF_tRNA10 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D BBIF_tRNA48 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D BBIF_tRNA3 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D BBIF_tRNA14 tRNA-Val K14237 tRNA-Val; tRNA Val
D BBIF_tRNA26 tRNA-Val K14237 tRNA-Val; tRNA Val
D BBIF_tRNA19 tRNA-Val K14237 tRNA-Val; tRNA Val
D BBIF_tRNA13 tRNA-Val K14237 tRNA-Val; tRNA Val
D BBIF_tRNA27 tRNA-Val K14237 tRNA-Val; tRNA Val
D BBIF_0228 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BBIF_1616 gatA; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D BBIF_1615 gatB; glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D BBIF_1617 gatC2; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D BBIF_0832 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D BBIF_0687 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BBIF_0508 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D BBIF_0964 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D BBIF_1451 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D BBIF_0347 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D BBIF_1727 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D BBIF_0652 fmt; fmt Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D BBIF_1606 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D BBIF_1029 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BBIF_1319 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D BBIF_1435 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D BBIF_0259 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BBIF_1339 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D BBIF_0686 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D BBIF_1106 pheS; Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D BBIF_1105 pheT; Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D BBIF_1086 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BBIF_0042 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:bbi03060]
D BBIF_1484 secY; Protein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D BBIF_0279 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D BBIF_0980 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D BBIF_0957 yajC; Protein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D BBIF_1782 yidC; preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BBIF_1223 secA; Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BBIF_0345 ffh; Signal recognition particle, subunit FFH/SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D BBIF_1635 ftsY; Cell division protein ftsY K03110 ftsY; fused signal recognition particle receptor
D BBIF_0379 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BBIF_0514 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:bbi04122]
D BBIF_0626 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D BBIF_1712 thiS; ThiS protein K03154 thiS; sulfur carrier protein
C 03050 Proteasome
D BBIF_0654 mpa; proteasome-associated ATPase K13527 mpa; proteasome-associated ATPase
C 03018 RNA degradation [PATH:bbi03018]
D BBIF_0272 rne; ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D BBIF_0742 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BBIF_1573 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D BBIF_1300 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BBIF_1611 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D BBIF_0461 Conserved hypothetical protein with metallo-beta-lactamase domain K12574 rnj; ribonuclease J [EC:3.1.-.-]
D BBIF_1739 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D BBIF_0673 groEL; 60 kDa chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BBIF_1705 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D BBIF_1773 pcnA; tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:bbi03030]
D BBIF_1332 dnaQ; DNA polymerase III alpha subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BBIF_0537 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BBIF_1695 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BBIF_1677 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BBIF_1026 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BBIF_0001 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BBIF_1630 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D BBIF_1293 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D BBIF_0291 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D BBIF_1337 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BBIF_1462 rnh; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D BBIF_0380 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D BBIF_0706 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:bbi03410]
D BBIF_1604 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D BBIF_0670 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D BBIF_0440 mutY; A/G-specific DNA glycosylase, HhH-GPD superfamily base excision DNA repair domain protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D BBIF_0638 xth; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D BBIF_1037 nfo; Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D BBIF_0706 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:bbi03420]
D BBIF_0739 mfd; Transcription-repair coupling factor (superfamily II helicase) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D BBIF_0905 uvrA1; Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D BBIF_0987 uvrA2; Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D BBIF_0775 uvrB; Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D BBIF_0986 uvrC; Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D BBIF_0453 uvrD1; ATP-dependent DNA helicase, UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BBIF_0496 uvrD2; DNA helicase II containing UvrD/REP helicase domain K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BBIF_0823 pcrA; ATP-dependent DNA helicase pcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BBIF_0706 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:bbi03430]
D BBIF_0453 uvrD1; ATP-dependent DNA helicase, UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BBIF_0496 uvrD2; DNA helicase II containing UvrD/REP helicase domain K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BBIF_0823 pcrA; ATP-dependent DNA helicase pcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BBIF_0477 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D BBIF_0476 xseB; Exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D BBIF_0291 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D BBIF_1337 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BBIF_0537 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BBIF_0001 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BBIF_1695 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BBIF_1026 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BBIF_1677 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BBIF_1332 dnaQ; DNA polymerase III alpha subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BBIF_0706 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:bbi03440]
D BBIF_0291 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D BBIF_1337 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BBIF_0002 recF; replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
D BBIF_0533 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D BBIF_1694 recR; recombination protein RecR K06187 recR; recombination protein RecR
D BBIF_1227 recA; RecA protein K03553 recA; recombination protein RecA
D BBIF_0959 ruvA; Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
D BBIF_0958 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D BBIF_0961 ruvC; crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D BBIF_0807 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BBIF_0036 putative DNA-binding protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BBIF_0052 conserved hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BBIF_0329 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BBIF_1291 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BBIF_0537 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BBIF_0001 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BBIF_1695 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BBIF_1026 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BBIF_1677 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BBIF_1332 dnaQ; DNA polymerase III alpha subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BBIF_0649 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:bbi03250]
D BBIF_1190 Peptidyl-prolyl cis-trans isomerase (cyclophilin) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:bbi02010]
D BBIF_1765 msiK; cellobiose transport system, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D BBIF_0394 putative transporter protein K17246 chiG; putative chitobiose transport system permease protein
D BBIF_1546 pstS; Phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D BBIF_1545 pstC; Phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein
D BBIF_1544 pstA; Phosphate transport system permease protein K02038 pstA; phosphate transport system permease protein
D BBIF_1543 pstB; beta-glucosides-specific IIA component K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D BBIF_0691 gluB; Glutamate-binding protein GluB K10005 gluB; glutamate transport system substrate-binding protein
D BBIF_1030 solute binding protein of ABC transporter system K10005 gluB; glutamate transport system substrate-binding protein
D BBIF_0692 gluC; Glutamate transport system permease protein GluC K10006 gluC; glutamate transport system permease protein
D BBIF_0693 gluD; Glutamate transport system permease protein GluD K10007 gluD; glutamate transport system permease protein
D BBIF_0690 gluA; Glutamate transport system ATP-binding protein GluA K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D BBIF_1155 YaeC family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D BBIF_1151 D-methionine transport system permease protein K02072 metI; D-methionine transport system permease protein
D BBIF_1152 D-methionine transport system, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D BBIF_0636 peptide/nickel transport system, extracellular solute-binding protein K13889 gsiB; glutathione transport system substrate-binding protein
D BBIF_0633 peptide/nickel transport system, permease protein K13890 gsiC; glutathione transport system permease protein
D BBIF_0634 peptide/nickel transport system, permease protein K13891 gsiD; glutathione transport system permease protein
D BBIF_0635 peptide/nickel transport system, ATP-binding protein K13892 gsiA; glutathione transport system ATP-binding protein
D BBIF_1582 bioY; BioY protein K03523 bioY; biotin transport system substrate-specific component
D BBIF_0702 cobalt/nickel transport system, ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D BBIF_0735 tagG; teichoic acid transport system permease K09692 tagG; teichoic acid transport system permease protein
D BBIF_0736 tagH; teichoic acid transport system, ATP-binding protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]
D BBIF_0725 ATP-binding protein of ABC transporter system K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D BBIF_0521 ftsX; Cell division protein ftsX K09811 ftsX; cell division transport system permease protein
D BBIF_0520 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D BBIF_0487 ATP-binding cassette, subfamily B K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D BBIF_1646 ATP-binding cassette, subfamily B K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D BBIF_0213 ATP-binding cassette, subfamily B K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D BBIF_0488 ATP-binding cassette, subfamily B K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D BBIF_0214 ATP-binding cassette, subfamily B K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D BBIF_1645 ATP-binding cassette, subfamily B K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS) [PATH:bbi02060]
D BBIF_1674 Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D BBIF_1675 Phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D BBIF_0262 nagE; PTS system, N-acetylglucosamine-specific IIC subunit K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D BBIF_0261 crr; PTS system, glucose-specific IIA component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D BBIF_1455 pstG; beta-glucosides-specific IIA component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D BBIF_1658 celA; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D BBIF_1659 celB; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D BBIF_1660 celC; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D BBIF_0374 gatC1; putative PTS system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
D BBIF_0025 PTS system, ascorbate-specific IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D BBIF_0026 PTS system, ascorbate-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D BBIF_0027 PTS system, ascorbate-specific IIC componet K03475 ulaA; ascorbate PTS system EIIC component
C 03070 Bacterial secretion system [PATH:bbi03070]
D BBIF_0279 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D BBIF_0980 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D BBIF_1484 secY; Protein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D BBIF_0957 yajC; Protein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D BBIF_1782 yidC; preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BBIF_1223 secA; Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BBIF_1635 ftsY; Cell division protein ftsY K03110 ftsY; fused signal recognition particle receptor
D BBIF_0345 ffh; Signal recognition particle, subunit FFH/SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:bbi02020]
D BBIF_1740 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D BBIF_1548 phoR; Phosphate regulon sensor protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D BBIF_1430 Signal transduction histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D BBIF_1547 regX; Two-component response regulator regX K07776 regX3; two-component system, OmpR family, response regulator RegX3
D BBIF_1546 pstS; Phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D BBIF_0158 degP; Trypsin-like serine protease K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D BBIF_0000 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D BBIF_1409 histidine kinase K18351 vanSAc; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D BBIF_0993 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D BBIF_1702 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D BBIF_1701 conserved hypothetical membrane spanning protein K12510 tadB; tight adherence protein B
D BBIF_1632 glnD; [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D BBIF_1633 glnB; Nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D BBIF_0556 glnA1; glutamine synthetase type I, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BBIF_0719 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BBIF_0426 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BBIF_1421 ptpA; low molecular weight protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:bbi02024]
D BBIF_1299 luxS; Autoinducer-2 production protein LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D BBIF_1004 trpE; Anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D BBIF_1550 aroG1; 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D BBIF_1554 aroG2; 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D BBIF_0450 protein containing fibronectin type III domain K20276 bapA; large repetitive protein
D BBIF_1020 fadD5; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0857 fadD3; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0382 fadD2; fadD1 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0315 fadD1; fadD1 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_1015 fadD4; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0426 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BBIF_0592 peptide/nickel transport system, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D BBIF_1309 peptide/nickel transport system, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D BBIF_1605 ABC transporter solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D BBIF_0593 peptide/nickel transport system, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D BBIF_1308 peptide/nickel transport system, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D BBIF_0594 peptide/nickel transport system, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D BBIF_1307 peptide peptide/nickel transport system, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D BBIF_0595 peptide/nickel transport system, ATP binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D BBIF_1306 peptide/nickel transport system, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D BBIF_1305 peptide/nickel transport system, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D BBIF_1782 yidC; preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D BBIF_0279 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D BBIF_0980 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D BBIF_1484 secY; Protein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D BBIF_0957 yajC; Protein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D BBIF_1223 secA; Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BBIF_1635 ftsY; Cell division protein ftsY K03110 ftsY; fused signal recognition particle receptor
D BBIF_0345 ffh; Signal recognition particle, subunit FFH/SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D BBIF_1216 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D BBIF_0742 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:bbi01501]
D BBIF_0727 conserved hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D BBIF_1524 putative beta-lactamase (class A) precursor K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D BBIF_1359 ampC; Beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D BBIF_0574 fts1; Peptidoglycan synthetase FtsI, penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:bbi01502]
D BBIF_1409 histidine kinase K18351 vanSAc; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D BBIF_0283 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BBIF_1295 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D BBIF_0576 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D BBIF_0577 murX; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D BBIF_0580 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D BBIF_0993 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance
D BBIF_1190 Peptidyl-prolyl cis-trans isomerase (cyclophilin) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:bbi01000]
C 01001 Protein kinases [BR:bbi01001]
D BBIF_1121 serine-threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D BBIF_1688 Conserved hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D BBIF_0135 Serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D BBIF_1219 serine-threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D BBIF_0136 Serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D BBIF_0451 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D BBIF_1132 Serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D BBIF_1767 Serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D BBIF_0912 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D BBIF_1548 phoR; Phosphate regulon sensor protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D BBIF_1430 Signal transduction histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D BBIF_1409 histidine kinase K18351 vanSAc; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D BBIF_0677 Two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D BBIF_0753 Sensory transduction protein kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:bbi01009]
D BBIF_0446 pp2c2; Protein phosphatase 2C K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D BBIF_0139 pp2c1; Serine/threonine protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D BBIF_0653 serB1; Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:bbi01002]
D BBIF_0514 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D BBIF_0835 Conserved hypothetical membrane spanning protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D BBIF_0637 pepC1; bleomycin hydrolase C K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D BBIF_1556 pepC2; bleomycin hydrolase K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D BBIF_1377 pcp1; pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D BBIF_1558 pcp; Pyroglutamyl-peptidase I K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D BBIF_0797 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D BBIF_0348 amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D BBIF_1426 conserved hypothetical protein with NlpC/P60 domain K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D BBIF_0522 Conserved hypothetical protein with CHAP domain K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D BBIF_1427 conserved hypothetical protein containing CHAP domain K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D BBIF_1268 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D BBIF_0872 gltB; Glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D BBIF_0879 cbh; Choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
D BBIF_0841 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70]
D BBIF_1650 Sortase K07284 srtA; sortase A [EC:3.4.22.70]
D BBIF_0303 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D BBIF_1760 Sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D BBIF_0133 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D BBIF_0217 pepD; dipeptidase A K08659 pepDA; dipeptidase [EC:3.4.-.-]
D BBIF_1641 pepDB; Dipeptidase A K08659 pepDA; dipeptidase [EC:3.4.-.-]
D BBIF_0237 conserved hypothetical protein containing CAAX amino terminal protease domain K07052 K07052; CAAX protease family protein
D BBIF_0462 pepN; Membrane alanine aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D BBIF_1336 M13 family peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D BBIF_0993 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D BBIF_0271 putative peptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D BBIF_1334 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D BBIF_0596 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D BBIF_1388 ftsH; ATP-dependent zinc metallopeptidase involved in cell division K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D BBIF_0161 htpX; heat shock HtpX endopeptidase K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D BBIF_0158 degP; Trypsin-like serine protease K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D BBIF_0142 peptidase S9, prolyl oligopeptidase active site domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D BBIF_0422 ptrB; oligopeptidase B K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D BBIF_1391 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D BBIF_1177 clp2; ATP-dependent Clp protease proteolytic subunit 2 K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D BBIF_1178 clp1; ATP-dependent Clp protease proteolytic subunit 1 K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D BBIF_0498 Conserved hypothetical protein with Lon protease (S16) C-terminal proteolytic domain K07177 K07177; Lon-like protease
D BBIF_0566 lexA; SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D BBIF_0763 Conserved hypothetical protein with peptidase S24-like domain K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D BBIF_0379 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D BBIF_0786 pepE; Peptidase E K05995 pepE; dipeptidase E [EC:3.4.13.21]
D BBIF_1156 L-asparagineamidohydrolase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D BBIF_1561 peptidase, type U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:bbi01003]
D BBIF_1394 N-acetylglucosaminyltransferase K19003 mgdA; 1,2-diacylglycerol 3-beta-glucosyltransferase [EC:2.4.1.336]
D BBIF_0875 Glycosyltransferase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D BBIF_1347 rfe; Undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D BBIF_1710 Glycosyltransferase (type 2 family) K16649 glft1; rhamnopyranosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,3/1,4-galactofuranosyltransferase [EC:2.4.1.287]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:bbi01005]
D BBIF_1347 rfe; Undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:bbi01011]
D BBIF_0239 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D BBIF_1521 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D BBIF_0581 murC; UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D BBIF_0578 murD1; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D BBIF_0605 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D BBIF_0283 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D BBIF_1295 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D BBIF_0490 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D BBIF_0577 murX; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D BBIF_0580 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D BBIF_0968 bacA; Bacitracin resistance protein (putative undecaprenol kinase) K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D BBIF_1776 Conserved hypothetical membrane spanning protein with virulence factor MviN domain K03980 murJ; putative peptidoglycan lipid II flippase
D BBIF_0574 fts1; Peptidoglycan synthetase FtsI, penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D BBIF_0137 pbp1; Penicillin binding transpeptidase K05364 pbpA; penicillin-binding protein A
D BBIF_1391 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D BBIF_0993 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D BBIF_1426 conserved hypothetical protein with NlpC/P60 domain K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D BBIF_0522 Conserved hypothetical protein with CHAP domain K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D BBIF_1427 conserved hypothetical protein containing CHAP domain K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D BBIF_0841 hypothetical protein K07284 srtA; sortase A [EC:3.4.22.70]
D BBIF_1650 Sortase K07284 srtA; sortase A [EC:3.4.22.70]
D BBIF_0303 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D BBIF_1760 Sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D BBIF_0133 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D BBIF_0834 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
C 01004 Lipid biosynthesis proteins [BR:bbi01004]
D BBIF_1579 fas; Type I multifunctional fatty acid synthase K11533 fas; fatty acid synthase, bacteria type [EC:2.3.1.-]
D BBIF_0254 3-oxoacyl-(acil-carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D BBIF_1537 putative GDSL-like Lipase/Acylhydrolase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D BBIF_1383 tesB; Acyl-CoA thioesterase K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D BBIF_1020 fadD5; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0857 fadD3; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0382 fadD2; fadD1 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0315 fadD1; fadD1 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_1015 fadD4; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_1220 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:bbi01008]
D BBIF_0601 aspA; aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:bbi01006]
D BBIF_1218 Polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D BBIF_0534 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D BBIF_1234 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D BBIF_1434 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
C 01007 Amino acid related enzymes [BR:bbi01007]
D BBIF_0228 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BBIF_0298 gltX2; gltX2 Glutamyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D BBIF_1086 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BBIF_0042 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D BBIF_0347 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D BBIF_0259 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BBIF_1727 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D BBIF_1319 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D BBIF_1606 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D BBIF_1029 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BBIF_1435 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D BBIF_0687 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BBIF_0686 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D BBIF_0508 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D BBIF_1451 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D BBIF_1339 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D BBIF_0964 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D BBIF_0832 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D BBIF_1106 pheS; Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D BBIF_1105 pheT; Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D BBIF_0278 aspC1; aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0311 yhdR; aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D BBIF_0870 Aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D BBIF_1150 aminotransferase, class I and II K08969 mtnE; L-glutamine---4-(methylsulfanyl)-2-oxobutanoate aminotransferase [EC:2.6.1.117]
D BBIF_1610 aspC2; Aspartate aminotransferase K10907 K10907; aminotransferase [EC:2.6.1.-]
D BBIF_0550 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D BBIF_1175 aspartate aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D BBIF_1100 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D BBIF_0863 ilvE2; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D BBIF_1428 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:bbi00194]
D BBIF_1587 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D BBIF_1588 atpD; ATP synthase beta chain K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D BBIF_1589 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D BBIF_1590 atpA; ATP synthase alpha chain K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D BBIF_1591 atpH; ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D BBIF_1592 atpF; ATP synthase B chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D BBIF_1593 atpE; ATP synthase C chain K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D BBIF_1594 atpB; ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:bbi03000]
D BBIF_1353 AraC family transcriptional regulator K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
D BBIF_1117 Transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D BBIF_0024 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BBIF_0032 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BBIF_0251 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BBIF_0500 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BBIF_1408 regulatory protein, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BBIF_1676 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BBIF_0387 Transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D BBIF_0181 LacI family transcriptional regulator, putative sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D BBIF_1662 Transcriptional regulator, GntR family K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA
D BBIF_0916 TetR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
D BBIF_1609 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BBIF_0486 Transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D BBIF_1735 hspR; Heat shock regulatory protein hspR K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D BBIF_1285 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BBIF_0426 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BBIF_1577 Conserved hypothetical protein with possible biotin-(acetyl-CoA carboxylase) ligase domain K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BBIF_1583 Biotin-(acetil-CoA-carboxilase)-ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BBIF_1212 putative transcriptional regulator K07727 K07727; putative transcriptional regulator
D BBIF_1454 licT; beta-glucoside operon transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D BBIF_0754 Cell division transcription factor WhmD K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D BBIF_0757 Transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D BBIF_1624 Conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D BBIF_1778 parB2; Chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BBIF_0767 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D BBIF_1098 argR; Arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism
D BBIF_0998 ROK family protein K02565 nagC; N-acetylglucosamine repressor
D BBIF_0587 ROK family transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D BBIF_0971 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D BBIF_0568 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D BBIF_0571 mraZ; Cell division protein mraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:bbi03021]
D BBIF_1478 rpoA; rpoA DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D BBIF_0442 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D BBIF_0443 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D BBIF_0647 rpoZ; DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D BBIF_1216 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D BBIF_0606 rpoE; RNA polymerase ECF-type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D BBIF_1470 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D BBIF_1246 nusB; antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D BBIF_0280 nusG; transcription antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D BBIF_0749 greA; Transcription elongation factor greA K03624 greA; transcription elongation factor GreA
D BBIF_1611 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:bbi03019]
D BBIF_0272 rne; ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D BBIF_0355 rncS; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D BBIF_0461 Conserved hypothetical protein with metallo-beta-lactamase domain K12574 rnj; ribonuclease J [EC:3.1.-.-]
D BBIF_1343 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D BBIF_1300 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BBIF_0742 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BBIF_1573 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D BBIF_1611 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D BBIF_1739 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D BBIF_0673 groEL; 60 kDa chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BBIF_1705 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D BBIF_1773 pcnA; tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D BBIF_0984 ATP-binding protein containing P-loop K06958 rapZ; RNase adapter protein RapZ
D BBIF_0927 helY; Helicase helY K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D BBIF_0560 hrpA; ATP-dependent helicase HrpA with DUF3418 domain K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:bbi03011]
D BBIF_0773 rpsA; SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1
D BBIF_1013 rpsB; SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D BBIF_1498 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D BBIF_0827 rpsD; SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D BBIF_1487 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D BBIF_0290 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D BBIF_1253 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D BBIF_1490 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D BBIF_1512 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D BBIF_1505 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D BBIF_1479 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D BBIF_1254 rpsL; rpsL SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D BBIF_1480 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D BBIF_1491 rpsN2; 30S ribosomal protein S14-1 K02954 RP-S14; small subunit ribosomal protein S14
D BBIF_1278 rpsN1; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D BBIF_1574 rpsO; rpsO SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D BBIF_0341 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D BBIF_1495 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D BBIF_0292 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D BBIF_1500 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D BBIF_0866 rpsT; SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D BBIF_0244 rlpA; large subunit ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D BBIF_1501 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D BBIF_1504 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D BBIF_1503 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D BBIF_1492 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D BBIF_1489 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D BBIF_0293 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D BBIF_1536 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D BBIF_0243 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D BBIF_1535 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D BBIF_1513 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D BBIF_1494 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D BBIF_1485 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D BBIF_1497 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D BBIF_1477 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D BBIF_1488 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D BBIF_0378 rplS; rplS LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19
D BBIF_0617 rplT; LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D BBIF_0273 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D BBIF_1499 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D BBIF_1502 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D BBIF_1493 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D BBIF_0274 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D BBIF_0328 rpmB1; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D BBIF_1277 rpmB2; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D BBIF_1496 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D BBIF_1486 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D BBIF_1352 rpmE2; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D BBIF_1279 rpmE1; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D BBIF_0354 rpmF1; rpmF LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32
D BBIF_1281 rpmF2; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D BBIF_1522 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D BBIF_1783 rpmH; LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D BBIF_0616 rpmI; rpmI LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D BBIF_1481 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D BBIF_1280 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D BBIF_0862 rplY; LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25
D BBIF_3rRNA5S 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BBIF_1rRNA5S 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BBIF_2rRNA5S 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BBIF_1rRNA16S 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BBIF_2rRNA16S 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BBIF_3rRNA16S 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BBIF_1rRNA23S 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BBIF_3rRNA23S 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BBIF_2rRNA23S 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:bbi03009]
D BBIF_0355 rncS; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D BBIF_1343 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D BBIF_0856 era; GTP-binding protein Era K03595 era; GTPase
D BBIF_0276 GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D BBIF_1470 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D BBIF_1246 nusB; antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D BBIF_0280 nusG; transcription antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D BBIF_1770 ksgA; Dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BBIF_0561 Conserved hypothetical protein with methyltransferase domain K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D BBIF_0335 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D BBIF_0851 putative RNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D BBIF_1780 gidB; Methyltransferase GidB (Glucose inhibited division protein B) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BBIF_0572 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BBIF_1730 Tetrapyrrole (Corrin/Porphyrin) methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BBIF_1080 conserved hypothetical protein with FtsJ-like methyltransferase domain K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D BBIF_1757 SpoU rRNA methylase family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BBIF_0193 putative SPOUT methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D BBIF_1007 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D BBIF_0524 23S RNA-specific pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D BBIF_0949 rluB; Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BBIF_0515 Ribosomal large subunit pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BBIF_1023 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D BBIF_0339 rimM; 16S rRNA processing protein rimM K02860 rimM; 16S rRNA processing protein RimM
D BBIF_0272 rne; ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D BBIF_0833 resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D BBIF_0948 GTP-binding protein K03977 engA; GTPase
D BBIF_0563 GTP-binding protein K03665 hflX; GTPase
D BBIF_1348 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D BBIF_1205 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D BBIF_1468 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D BBIF_1063 iojap-like protein K09710 ybeB; ribosome-associated protein
D BBIF_0854 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
D BBIF_0539 Conserved hypothetical protein with CRS1 / YhbY (CRM) domain K07574 yhbY; RNA-binding protein
D BBIF_1149 translation-associated GTPase K06942 ychF; ribosome-binding ATPase
D BBIF_0353 Conserved hypothetical protein, DUF177 domain protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:bbi03016]
D BBIF_0228 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BBIF_1339 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D BBIF_1319 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D BBIF_1029 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BBIF_1727 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D BBIF_0259 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BBIF_1435 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D BBIF_0687 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BBIF_0832 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D BBIF_0508 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D BBIF_0964 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D BBIF_1451 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D BBIF_0347 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D BBIF_1606 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D BBIF_0686 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D BBIF_1106 pheS; Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D BBIF_1105 pheT; Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D BBIF_1086 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BBIF_0042 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D BBIF_0584 D-tyrosyl-tRNA(Tyr)deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D BBIF_0852 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D BBIF_0887 tRNA (adenine-N(1)-)-methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D BBIF_1401 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D BBIF_1475 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D BBIF_1467 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D BBIF_0626 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D BBIF_1348 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D BBIF_1234 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D BBIF_0360 rph; rph Ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D BBIF_1181 Ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D BBIF_0298 gltX2; gltX2 Glutamyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D BBIF_0611 Conserved hypothetical protein with YbaK / prolyl-tRNA synthetases associated domain K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D BBIF_1750 mesJ; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D BBIF_1235 RNA modification enzyme, MiaB family K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D BBIF_0338 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D BBIF_0437 RNA methyltransferase, SpoU rRNA Methylase family K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D BBIF_1107 rRNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D BBIF_0524 23S RNA-specific pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D BBIF_0157 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D BBIF_1390 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D BBIF_1024 peptidase M22, glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D BBIF_1022 gcp; O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D BBIF_1025 Conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D BBIF_1573 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:bbi03012]
D BBIF_1469 infB; Bacterial Protein Translation Initiation Factor 2 K02519 infB; translation initiation factor IF-2
D BBIF_0615 infC; infC Bacterial Protein Translation Initiation Factor 3 K02520 infC; translation initiation factor IF-3
D BBIF_1012 tsf; Protein translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D BBIF_1251 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D BBIF_1252 fusA; translation elongation factor G K02355 fusA; elongation factor G
D BBIF_1351 prfA; Bacterial Peptide Chain Release Factor 1 (RF-1) K02835 prfA; peptide chain release factor 1
D BBIF_1009 rrf; ribosome recycling factor RRF K02838 frr; ribosome recycling factor
D BBIF_1350 hemK; Peptide release factor-glutamine N5-methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D BBIF_0738 pth; Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D BBIF_1482 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D BBIF_1247 efp; translation elongation factor P K02356 efp; elongation factor P
D BBIF_0519 prfB; peptide chain release factor 2 with RF-1 domain K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:bbi03110]
D BBIF_0307 clpB; ATP-binding subunit of Clp protease K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D BBIF_0681 ATP-dependent clp protease K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D BBIF_1176 clpX; ATP-dependent Clp protease ATP-binding subunit clpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D BBIF_1739 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D BBIF_0673 groEL; 60 kDa chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BBIF_0970 dnaJ2; Chaperone protein dnaJ K03686 dnaJ; molecular chaperone DnaJ
D BBIF_1738 grpE; GrpE protein K03687 GRPE; molecular chaperone GrpE
D BBIF_0337 Hsp20-family heat shock chaperone K13993 HSP20; HSP20 family protein
D BBIF_1525 10 kDa chaperonin GROES K04078 groES; chaperonin GroES
D BBIF_1388 ftsH; ATP-dependent zinc metallopeptidase involved in cell division K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D BBIF_1594 atpB; ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D BBIF_1382 conserved hypothetical protein containing bacterial Ig-like domain (group 2) K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BBIF_1476 conserved hypothetical protein containing bacterial Ig-like domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BBIF_0963 nagZ; beta_N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D BBIF_1190 Peptidyl-prolyl cis-trans isomerase (cyclophilin) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D BBIF_0415 thioredoxin K03671 TXN; thioredoxin
D BBIF_0249 putative thioredoxin K05838 ybbN; putative thioredoxin
C 04131 Membrane trafficking [BR:bbi04131]
D BBIF_0612 gap; gap Glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D BBIF_1032 gpm3; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BBIF_1433 gpm5; phosphoglycerate mutase 1 family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BBIF_0777 pyk; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BBIF_0325 conserved hypothetical protein, MFS superfamily K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system [BR:bbi04121]
D BBIF_0657 Conserved hypothetical protein with DUF797 domain K13570 pup; prokaryotic ubiquitin-like protein Pup
C 03051 Proteasome [BR:bbi03051]
D BBIF_0654 mpa; proteasome-associated ATPase K13527 mpa; proteasome-associated ATPase
D BBIF_0658 pafA; proteasome accessory factor A K13571 pafA; proteasome accessory factor A [EC:6.3.1.19]
D BBIF_0655 Conserved hypothetical protein with Pup-ligase protein domain K20814 dop; Pup amidohydrolase [EC:3.5.1.119]
C 03032 DNA replication proteins [BR:bbi03032]
D BBIF_1462 rnh; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D BBIF_0659 hupB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BBIF_0000 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D BBIF_1630 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D BBIF_1293 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D BBIF_0291 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D BBIF_1337 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BBIF_0537 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BBIF_0001 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BBIF_1026 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BBIF_1677 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BBIF_1332 dnaQ; DNA polymerase III alpha subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BBIF_1695 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BBIF_0380 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D BBIF_0706 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D BBIF_0005 gyrA1; gyrA1 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D BBIF_1210 gyrA2; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D BBIF_0004 gyrB1; gyrB1 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D BBIF_1215 gyrB2; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D BBIF_1679 topA; topA DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D BBIF_0400 topB1; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D BBIF_0401 topB2; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:bbi03036]
D BBIF_0355 rncS; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D BBIF_0659 hupB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BBIF_0000 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D BBIF_0029 DNA-binding ferritin-like protein for protection from oxidative damage, Dps family protein K04047 dps; starvation-inducible DNA-binding protein
D BBIF_1609 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BBIF_0600 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D BBIF_0620 scpA; Segregation and condensation protein ScpA K05896 scpA; segregation and condensation protein A
D BBIF_0621 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D BBIF_0520 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D BBIF_0574 fts1; Peptidoglycan synthetase FtsI, penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D BBIF_0716 putative ftsK/spoIIIE family protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D BBIF_0755 ftsK1; DNA segregation ATPase K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D BBIF_1232 ftsK; Cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D BBIF_0582 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D BBIF_0579 fstW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D BBIF_0521 ftsX; Cell division protein ftsX K09811 ftsX; cell division transport system permease protein
D BBIF_0510 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D BBIF_0511 Conserved hypothetical protein with DUF552 domain K09772 sepF; cell division inhibitor SepF
D BBIF_0619 chromosome partitioning protein K03496 parA; chromosome partitioning protein
D BBIF_1779 parA3; Chromosome partitioning protein parA K03496 parA; chromosome partitioning protein
D BBIF_1778 parB2; Chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BBIF_1780 gidB; Methyltransferase GidB (Glucose inhibited division protein B) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BBIF_0632 xerC; Integrase/recombinase XerC K03733 xerC; integrase/recombinase XerC
D BBIF_0618 xerD; Integrase/recombinase (XerD/RipX family) K04763 xerD; integrase/recombinase XerD
D BBIF_0785 Integrase/recombinase (XerD/RipX family) K04763 xerD; integrase/recombinase XerD
D BBIF_0707 mrp; ATP-binding protein involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D BBIF_1202 ficl; conserved hypothetical protein with Fic domain K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D BBIF_1233 fic2; conserved hypothetical protein with Fic domain K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D BBIF_0983 Conserved hypothetical protein K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:bbi03400]
D BBIF_0670 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D BBIF_0440 mutY; A/G-specific DNA glycosylase, HhH-GPD superfamily base excision DNA repair domain protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D BBIF_1604 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D BBIF_0152 NTP pyrophosphohydrolase with NUDIX domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BBIF_0622 Phosphohydrolase (MutT/nudix family protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BBIF_1206 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BBIF_0638 xth; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D BBIF_1037 nfo; Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D BBIF_0706 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D BBIF_0905 uvrA1; Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D BBIF_0987 uvrA2; Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D BBIF_0775 uvrB; Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D BBIF_0986 uvrC; Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D BBIF_0453 uvrD1; ATP-dependent DNA helicase, UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BBIF_0496 uvrD2; DNA helicase II containing UvrD/REP helicase domain K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BBIF_0823 pcrA; ATP-dependent DNA helicase pcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D BBIF_0442 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D BBIF_0443 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D BBIF_1478 rpoA; rpoA DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D BBIF_0647 rpoZ; DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D BBIF_0739 mfd; Transcription-repair coupling factor (superfamily II helicase) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D BBIF_0477 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D BBIF_0476 xseB; Exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D BBIF_0537 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D BBIF_0001 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D BBIF_1026 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D BBIF_1677 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D BBIF_1332 dnaQ; DNA polymerase III alpha subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D BBIF_1695 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D BBIF_0291 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D BBIF_1337 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BBIF_0468 vsr; DNA mismatch endonuclease vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D BBIF_1227 recA; RecA protein K03553 recA; recombination protein RecA
D BBIF_0959 ruvA; Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
D BBIF_0958 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D BBIF_0961 ruvC; crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D BBIF_0077 rusA; endodeoxyribonuclease RusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
D BBIF_0649 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D BBIF_1465 radA; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms
D BBIF_0002 recF; replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
D BBIF_0807 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BBIF_0036 putative DNA-binding protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BBIF_0052 conserved hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BBIF_0329 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BBIF_1291 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D BBIF_0533 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D BBIF_1694 recR; recombination protein RecR K06187 recR; recombination protein RecR
D BBIF_1075 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D BBIF_0005 gyrA1; gyrA1 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D BBIF_1210 gyrA2; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D BBIF_0004 gyrB1; gyrB1 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D BBIF_1215 gyrB2; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D BBIF_1679 topA; topA DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D BBIF_0659 hupB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D BBIF_1300 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D BBIF_1518 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D BBIF_1267 DNA repair protein umuC K03502 umuC; DNA polymerase V
D BBIF_0763 Conserved hypothetical protein with peptidase S24-like domain K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D BBIF_0566 lexA; SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D BBIF_1226 recX; RecX-like protein K03565 recX; regulatory protein
D BBIF_1211 ATP-dependent helicase II K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D BBIF_1706 Phosphohydrolase (MutT/nudix family protein) K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D BBIF_1567 nrdE; Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BBIF_1568 nrdF; Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:bbi03029]
D BBIF_1469 infB; Bacterial Protein Translation Initiation Factor 2 K02519 infB; translation initiation factor IF-2
D BBIF_0615 infC; infC Bacterial Protein Translation Initiation Factor 3 K02520 infC; translation initiation factor IF-3
D BBIF_1012 tsf; Protein translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D BBIF_1251 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D BBIF_1252 fusA; translation elongation factor G K02355 fusA; elongation factor G
D BBIF_0856 era; GTP-binding protein Era K03595 era; GTPase
D BBIF_1086 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D BBIF_1029 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D BBIF_0687 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D BBIF_0508 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D BBIF_0259 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D BBIF_1616 gatA; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D BBIF_1615 gatB; glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D BBIF_1617 gatC2; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D BBIF_0291 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D BBIF_1337 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D BBIF_1739 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D BBIF_1738 grpE; GrpE protein K03687 GRPE; molecular chaperone GrpE
D BBIF_0673 groEL; 60 kDa chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BBIF_1525 10 kDa chaperonin GROES K04078 groES; chaperonin GroES
D BBIF_0970 dnaJ2; Chaperone protein dnaJ K03686 dnaJ; molecular chaperone DnaJ
D BBIF_0626 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D BBIF_0707 mrp; ATP-binding protein involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D BBIF_1782 yidC; preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:bbi02000]
D BBIF_0487 ATP-binding cassette, subfamily B K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D BBIF_1646 ATP-binding cassette, subfamily B K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D BBIF_0213 ATP-binding cassette, subfamily B K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D BBIF_0488 ATP-binding cassette, subfamily B K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D BBIF_0214 ATP-binding cassette, subfamily B K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D BBIF_1645 ATP-binding cassette, subfamily B K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D BBIF_0349 ATP-binding protein of ABC transporter system K15738 uup; ABC transport system ATP-binding/permease protein
D BBIF_0225 nitrate/sulfonate/taurine transport system, substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D BBIF_0371 ssuC; nitrate/sulfonate/taurine transport system, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D BBIF_0370 ssuB; nitrate/sulfonate/taurine transport system, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D BBIF_1765 msiK; cellobiose transport system, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D BBIF_0394 putative transporter protein K17246 chiG; putative chitobiose transport system permease protein
D BBIF_1109 putative ABC transport system ATP-binding protein K02069 STAR2; UDP-glucose/iron transport system permease protein
D BBIF_1108 putative ABC transport system permease protein K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein
D BBIF_1003 Solute-binding protein of ABC transporter system for sugars K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D BBIF_1311 multiple sugar transport system substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D BBIF_1002 multiple sugar transport system, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D BBIF_1314 sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D BBIF_1001 multiple sugar transport system, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D BBIF_1546 pstS; Phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D BBIF_1545 pstC; Phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein
D BBIF_1544 pstA; Phosphate transport system permease protein K02038 pstA; phosphate transport system permease protein
D BBIF_1543 pstB; beta-glucosides-specific IIA component K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D BBIF_0691 gluB; Glutamate-binding protein GluB K10005 gluB; glutamate transport system substrate-binding protein
D BBIF_1030 solute binding protein of ABC transporter system K10005 gluB; glutamate transport system substrate-binding protein
D BBIF_0692 gluC; Glutamate transport system permease protein GluC K10006 gluC; glutamate transport system permease protein
D BBIF_0693 gluD; Glutamate transport system permease protein GluD K10007 gluD; glutamate transport system permease protein
D BBIF_0690 gluA; Glutamate transport system ATP-binding protein GluA K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D BBIF_1155 YaeC family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D BBIF_1151 D-methionine transport system permease protein K02072 metI; D-methionine transport system permease protein
D BBIF_1152 D-methionine transport system, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D BBIF_0636 peptide/nickel transport system, extracellular solute-binding protein K13889 gsiB; glutathione transport system substrate-binding protein
D BBIF_0633 peptide/nickel transport system, permease protein K13890 gsiC; glutathione transport system permease protein
D BBIF_0634 peptide/nickel transport system, permease protein K13891 gsiD; glutathione transport system permease protein
D BBIF_0635 peptide/nickel transport system, ATP-binding protein K13892 gsiA; glutathione transport system ATP-binding protein
D BBIF_0592 peptide/nickel transport system, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D BBIF_1309 peptide/nickel transport system, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D BBIF_1605 ABC transporter solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D BBIF_0593 peptide/nickel transport system, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D BBIF_1308 peptide/nickel transport system, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D BBIF_0594 peptide/nickel transport system, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D BBIF_1307 peptide peptide/nickel transport system, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D BBIF_0595 peptide/nickel transport system, ATP binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D BBIF_1306 peptide/nickel transport system, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D BBIF_1305 peptide/nickel transport system, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D BBIF_0876 iron complex transport system, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D BBIF_1582 bioY; BioY protein K03523 bioY; biotin transport system substrate-specific component
D BBIF_0702 cobalt/nickel transport system, ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D BBIF_0698 cobalt/nickel transport system, permease protein K24040 ecfTA; energy-coupling factor transport system permease/ATP-binding protein [EC:7.-.-.-]
D BBIF_0771 zinc/manganese transport system, substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D BBIF_1275 ABC-type metal ion transport system periplasmic component K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D BBIF_0769 zinc/manganese transport system, permease protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D BBIF_0770 zinc/manganese transport system, ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D BBIF_0735 tagG; teichoic acid transport system permease K09692 tagG; teichoic acid transport system permease protein
D BBIF_0736 tagH; teichoic acid transport system, ATP-binding protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]
D BBIF_0806 Conserved hypothetical membrane spanning protein K25142 lnrN; linearmycin/streptolysin S transport system permease protein
D BBIF_0805 Conserved hypothetical membrane spanning protein K25143 lnrM; linearmycin/streptolysin S transport system permease protein
D BBIF_0804 ATP-binding protein of ABC transporter system K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein
D BBIF_0725 ATP-binding protein of ABC transporter system K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D BBIF_0521 ftsX; Cell division protein ftsX K09811 ftsX; cell division transport system permease protein
D BBIF_0520 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D BBIF_0059 Permease protein of ABC transporter system for polysaccharides K01992 ABC-2.P; ABC-2 type transport system permease protein
D BBIF_1392 ABC-2 type transport system, permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D BBIF_1620 antibiotic transport system ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BBIF_1072 ABC transporter system, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BBIF_1393 ABC type transport system, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BBIF_0060 ATP-binding protein ABC transporter system for polysaccharides K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D BBIF_1327 putative ABC-transporter protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BBIF_0192 Permease protein of ABC transporter system K02004 ABC.CD.P; putative ABC transport system permease protein
D BBIF_0825 Permease protein of ABC transporter system K02004 ABC.CD.P; putative ABC transport system permease protein
D BBIF_1162 putative permease protein of ABC transporter system K02004 ABC.CD.P; putative ABC transport system permease protein
D BBIF_1416 Permease protein of ABC transporter system K02004 ABC.CD.P; putative ABC transport system permease protein
D BBIF_1417 ATP-binding protein of ABC transporter system K02004 ABC.CD.P; putative ABC transport system permease protein
D BBIF_1362 putative ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D BBIF_1665 Permease protein of ABC transporter system K02004 ABC.CD.P; putative ABC transport system permease protein
D BBIF_1666 Permease protein of ABC transporter system K02004 ABC.CD.P; putative ABC transport system permease protein
D BBIF_1717 Permease protein of ABC transporter system K02004 ABC.CD.P; putative ABC transport system permease protein
D BBIF_0191 ATP-binding protein of ABC transporter system K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BBIF_0268 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BBIF_0826 ATP-binding protein of ABC transporter system K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BBIF_1163 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BBIF_1418 ATP-binding protein of ABC transporter system K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BBIF_1664 ATP-binding protein of ABC transporter system K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BBIF_1718 ATP-binding protein of ABC transporter system K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D BBIF_0845 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D BBIF_0977 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D BBIF_0906 Na+ driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D BBIF_1631 Na+ driven multidrug efflux pump (MatE domain) K26937 dinF; MATE family, multidrug efflux pump
D BBIF_0585 glucose/galactose transporter with MFS_1 domain K02429 fucP; MFS transporter, FHS family, L-fucose permease
D BBIF_0037 major facilitator superfamily MFS 1 K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D BBIF_1436 araJ; putative arabinose polymer MFS transporter K08156 araJ; MFS transporter, DHA1 family, arabinose polymer utilization protein
D BBIF_1049 MFS transporter, macrolide efflux protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D BBIF_0325 conserved hypothetical protein, MFS superfamily K06902 UMF1; MFS transporter, UMF1 family
D BBIF_1674 Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D BBIF_1675 Phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D BBIF_0262 nagE; PTS system, N-acetylglucosamine-specific IIC subunit K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D BBIF_0261 crr; PTS system, glucose-specific IIA component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D BBIF_1455 pstG; beta-glucosides-specific IIA component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D BBIF_1658 celA; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D BBIF_1659 celB; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D BBIF_1660 celC; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D BBIF_0374 gatC1; putative PTS system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
D BBIF_0025 PTS system, ascorbate-specific IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D BBIF_0026 PTS system, ascorbate-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D BBIF_0027 PTS system, ascorbate-specific IIC componet K03475 ulaA; ascorbate PTS system EIIC component
D BBIF_0950 major intrinsic protein K06188 aqpZ; aquaporin Z
D BBIF_0296 glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator
D BBIF_1634 amtP; Ammonium transporter K03320 amt; ammonium transporter, Amt family
D BBIF_0665 Conserved hypothetical membrane spanning protein with a von Willebrand factor type A domain K07114 yfbK; Ca-activated chloride channel homolog
D BBIF_0021 large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D BBIF_1031 corA; Magnesium and cobalt transport protein corA K03284 corA; magnesium transporter
D BBIF_0180 crcB2; Camphor resistance CrcB protein K06199 crcB; fluoride exporter
D BBIF_0031 Conserved hypothetical membrane spanning protein with DUF21 and CBS domains K03699 tlyC; magnesium and cobalt exporter, CNNM family
D BBIF_0855 Conserved hypothetical membrane spanning protein with CBS and transporter associated domains K03699 tlyC; magnesium and cobalt exporter, CNNM family
D BBIF_1257 conserved hypothetical protein containing bacterial Ig-like domain (group 2) K07279 yfaL; autotransporter family porin
D BBIF_0301 conserved hypothetical protein containing von Willebrand factor type A domain K21449 ata; trimeric autotransporter adhesin
D BBIF_1607 Conserved hypothetical protein K21449 ata; trimeric autotransporter adhesin
D BBIF_1405 Galactoside symporter K16209 lacS; lactose/raffinose/galactose permease
D BBIF_1724 Conserved hypothetical protein K16210 togT; oligogalacturonide transporter
D BBIF_0565 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D BBIF_1354 glucose uptake protein K05340 glcU; glucose uptake protein
D BBIF_0884 conserved hypothetical protein K05786 rarD; chloramphenicol-sensitive protein RarD
D BBIF_1174 nhaA; Na+/H+ antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D BBIF_1752 nhaP; Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D BBIF_1077 cation transporter K03498 trkH; trk/ktr system potassium uptake protein
D BBIF_1078 Conserved hypothetical protein K03499 trkA; trk/ktr system potassium uptake protein
D BBIF_1540 Guanine-hypoxanthine permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D BBIF_1179 Chloride channel protein K03281 clcA; chloride channel protein, CIC family
D BBIF_0391 natural resistance-associated macrophage protein K03322 mntH; manganese transport protein
D BBIF_1776 Conserved hypothetical membrane spanning protein with virulence factor MviN domain K03980 murJ; putative peptidoglycan lipid II flippase
D BBIF_0270 putative membrane transport protein K13936 mdcF; malonate transporter and related proteins
D BBIF_0910 putative transporter K24180 mleP; malate permease and related proteins
D BBIF_0362 putative permease K24180 mleP; malate permease and related proteins
D BBIF_1722 potassium transporter K03549 kup; KUP system potassium uptake protein
D BBIF_0343 Lysine exporter protein K06895 lysE; L-lysine exporter family protein LysE/ArgO
D BBIF_1419 conserved hypothetical protein K26606 azlD; branched chain amino acid efflux pump
D BBIF_0699 conserved hypothetical membrane spanning protein K23675 fmnP; riboflavin transporter
D BBIF_0579 fstW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D BBIF_1669 iron permease FTR1 K07243 FTR; high-affinity iron transporter
D BBIF_1668 Fe2+ high-affinity transport protein K07230 p19; periplasmic iron binding protein
D BBIF_0368 magnesium transporter protein, ATPase subunit K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:bbi02044]
D BBIF_0835 Conserved hypothetical membrane spanning protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D BBIF_1702 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D BBIF_1701 conserved hypothetical membrane spanning protein K12510 tadB; tight adherence protein B
D BBIF_0512 Conserved hypothetical membrane spanning protein with YGGT family K02221 yggT; YggT family protein
D BBIF_1028 comEA; competence protein ComEA K02237 comEA; competence protein ComEA
D BBIF_1027 Putative hydrolase K02238 comEC; competence protein ComEC
D BBIF_1257 conserved hypothetical protein containing bacterial Ig-like domain (group 2) K07279 yfaL; autotransporter family porin
D BBIF_1223 secA; Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D BBIF_0279 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D BBIF_0980 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D BBIF_1484 secY; Protein translocase subunit secY K03076 secY; preprotein translocase subunit SecY
D BBIF_0345 ffh; Signal recognition particle, subunit FFH/SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D BBIF_1635 ftsY; Cell division protein ftsY K03110 ftsY; fused signal recognition particle receptor
D BBIF_0957 yajC; Protein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D BBIF_1782 yidC; preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:bbi02042]
D BBIF_0031 Conserved hypothetical membrane spanning protein with DUF21 and CBS domains K03699 tlyC; magnesium and cobalt exporter, CNNM family
D BBIF_0855 Conserved hypothetical membrane spanning protein with CBS and transporter associated domains K03699 tlyC; magnesium and cobalt exporter, CNNM family
D BBIF_0752 Hemolysin-like conserved hypothetical membrane-spanning protein K11068 hlyIII; hemolysin III
D BBIF_1682 hemolysin III family related membrane protein K11068 hlyIII; hemolysin III
D BBIF_1576 beta-N-acetylglucosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35]
C 02022 Two-component system [BR:bbi02022]
D BBIF_1548 phoR; Phosphate regulon sensor protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D BBIF_1430 Signal transduction histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D BBIF_1547 regX; Two-component response regulator regX K07776 regX3; two-component system, OmpR family, response regulator RegX3
D BBIF_1409 histidine kinase K18351 vanSAc; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D BBIF_0677 Two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D BBIF_0676 Two-component response regulator K02483 K02483; two-component system, OmpR family, response regulator
D BBIF_1055 transcriptional regulator, winged helix family protein K02483 K02483; two-component system, OmpR family, response regulator
D BBIF_0753 Sensory transduction protein kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
D BBIF_0779 Transcriptional regulator K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins [BR:bbi02035]
D BBIF_0835 Conserved hypothetical membrane spanning protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D BBIF_1702 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:bbi04812]
D BBIF_0510 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D BBIF_0619 chromosome partitioning protein K03496 parA; chromosome partitioning protein
D BBIF_1779 parA3; Chromosome partitioning protein parA K03496 parA; chromosome partitioning protein
D BBIF_1778 parB2; Chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:bbi04147]
D BBIF_0742 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D BBIF_0612 gap; gap Glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D BBIF_0982 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D BBIF_0777 pyk; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D BBIF_1190 Peptidyl-prolyl cis-trans isomerase (cyclophilin) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D BBIF_0673 groEL; 60 kDa chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D BBIF_1739 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D BBIF_0363 gpi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D BBIF_0142 peptidase S9, prolyl oligopeptidase active site domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D BBIF_1346 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D BBIF_1017 guaB1; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D BBIF_1251 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D BBIF_0852 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D BBIF_0564 ldh2; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BBIF_0979 ldh3; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D BBIF_1020 fadD5; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0857 fadD3; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0382 fadD2; fadD1 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_0315 fadD1; fadD1 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_1015 fadD4; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D BBIF_1483 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D BBIF_0956 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D BBIF_1089 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D BBIF_1097 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D BBIF_1317 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D BBIF_0432 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D BBIF_0766 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D BBIF_0556 glnA1; glutamine synthetase type I, catalytic domain protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BBIF_0719 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D BBIF_1740 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D BBIF_0569 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D BBIF_0952 purH; Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D BBIF_0721 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D BBIF_1447 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D BBIF_0981 tpi; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D BBIF_1032 gpm3; phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D BBIF_1433 gpm5; phosphoglycerate mutase 1 family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:bbi02048]
D BBIF_1407 nagA2; N-acetylglucosamine-6-phosphate deacetylase K19128 csy2; CRISPR-associated protein Csy2
D BBIF_0207 possible CRISPR associated protein K09952 csn1; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-]
D BBIF_1090 HsdR-like protein of Type I restriction-modification system K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D BBIF_1092 HsdS-like protein of Type I restriction-modification system K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D BBIF_1093 HsdM-like protein of Type I restriction-modification system K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D BBIF_1197 putative N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D BBIF_0710 type II methyltransferase K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D BBIF_0457 Conserved hypothetical protein with RelB antitoxin domain K07473 dinJ; DNA-damage-inducible protein J
D BBIF_1191 addiction module antitoxin, RelB/DinJ family protein K07473 dinJ; DNA-damage-inducible protein J
D BBIF_0322 Conserved hypothetical protein with RelB antitoxin domain K07473 dinJ; DNA-damage-inducible protein J
D BBIF_0912 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D BBIF_0510 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D BBIF_0228 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D BBIF_0626 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:bbi04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:bbi04090]
D BBIF_0142 peptidase S9, prolyl oligopeptidase active site domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
C 01504 Antimicrobial resistance genes [BR:bbi01504]
D BBIF_1747 aminoglycoside transferase (kanamycin kinase) K00897 aphA; kanamycin kinase [EC:2.7.1.95]
D BBIF_0871 translation elongation factor K18220 tetM; ribosomal protection tetracycline resistance protein
D BBIF_1049 MFS transporter, macrolide efflux protein K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D BBIF_1524 putative beta-lactamase (class A) precursor K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D BBIF_1359 ampC; Beta-lactamase class A K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D BBIF_0993 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D BBIF_1409 histidine kinase K18351 vanSAc; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:bbi00536]
D BBIF_1576 beta-N-acetylglucosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35]
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:bbi00537]
D BBIF_1740 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D BBIF_1576 beta-N-acetylglucosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:bbi03100]
D BBIF_tRNA15 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BBIF_tRNA31 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BBIF_tRNA52 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BBIF_tRNA1 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D BBIF_tRNA9 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BBIF_tRNA34 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BBIF_tRNA33 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BBIF_tRNA36 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BBIF_tRNA18 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D BBIF_tRNA30 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D BBIF_tRNA38 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D BBIF_tRNA40 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D BBIF_tRNA28 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D BBIF_tRNA8 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D BBIF_tRNA32 tRNA-Glu K14223 tRNA-Gln; tRNA Gln
D BBIF_tRNA7 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BBIF_tRNA41 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D BBIF_tRNA5 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BBIF_tRNA25 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BBIF_tRNA29 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BBIF_tRNA12 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BBIF_tRNA49 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D BBIF_tRNA35 tRNA-His K14226 tRNA-His; tRNA His
D BBIF_tRNA2 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D BBIF_tRNA4 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BBIF_tRNA20 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BBIF_tRNA16 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BBIF_tRNA21 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BBIF_tRNA23 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D BBIF_tRNA11 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BBIF_tRNA51 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D BBIF_tRNA50 tRNA-Met K14230 tRNA-Met; tRNA Met
D BBIF_tRNA37 tRNA-Met K14230 tRNA-Met; tRNA Met
D BBIF_tRNA46 tRNA-Met K14230 tRNA-Met; tRNA Met
D BBIF_tRNA39 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D BBIF_tRNA22 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BBIF_tRNA24 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BBIF_tRNA42 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D BBIF_tRNA43 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BBIF_tRNA6 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BBIF_tRNA45 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BBIF_tRNA44 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D BBIF_tRNA17 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BBIF_tRNA53 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BBIF_tRNA47 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D BBIF_tRNA10 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D BBIF_tRNA48 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D BBIF_tRNA3 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D BBIF_tRNA14 tRNA-Val K14237 tRNA-Val; tRNA Val
D BBIF_tRNA26 tRNA-Val K14237 tRNA-Val; tRNA Val
D BBIF_tRNA19 tRNA-Val K14237 tRNA-Val; tRNA Val
D BBIF_tRNA13 tRNA-Val K14237 tRNA-Val; tRNA Val
D BBIF_tRNA27 tRNA-Val K14237 tRNA-Val; tRNA Val
D BBIF_1rRNA16S 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BBIF_2rRNA16S 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BBIF_3rRNA16S 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D BBIF_1rRNA23S 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BBIF_3rRNA23S 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BBIF_2rRNA23S 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D BBIF_3rRNA5S 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BBIF_1rRNA5S 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D BBIF_2rRNA5S 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D BBIF_0389 Aldo/keto diketogulonate reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D BBIF_0544 oxidoreductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D BBIF_1331 Oxidoreductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D BBIF_1154 pdha; pyruvate dehydrogenase E1 component subunit alpha K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D BBIF_1153 pdhb; pyruvate dehydrogenase E1 component subunit beta K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D BBIF_0149 msrA; bifunctional methionine sulfoxide reductase A/B protein K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D BBIF_0196 bcp; thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D BBIF_0034 ahpC; Alkyl hydroperoxide reductase C22 protein K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D BBIF_0160 fprA; Ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D BBIF_0198 Glutaredoxin-like protein K18917 mrx1; mycoredoxin [EC:1.20.4.3]
D BBIF_0479 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D BBIF_1183 pflA; Pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D BBIF_1356 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D BBIF_1349 Acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D BBIF_0256 lnbP1; lacto-N-biose phosphorylase 2 K15533 K15533; 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase [EC:2.4.1.211]
D BBIF_1000 lnbP2; lacto_N-biose phorylase K15533 K15533; 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase [EC:2.4.1.211]
D BBIF_0945 lgt; Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D BBIF_0997 Mucin desulfatase K13059 nahK; N-acetylhexosamine 1-kinase [EC:2.7.1.162]
D BBIF_1671 Conserved hypothetical protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D BBIF_0892 glnE; Glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D BBIF_1062 gpm4; Phosphoglycerate mutase K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]
D BBIF_0493 PHP C-terminal domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D BBIF_0888 putative phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D BBIF_1723 DNase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D BBIF_1586 Conserved hypothetical protein with DUF91 domain K07503 nucS; endonuclease [EC:3.1.-.-]
D BBIF_0285 conserved hypothetical protein containing multiple sugar recognition domains K17624 engCP; endo-alpha-N-acetylgalactosaminidase [EC:3.2.1.97]
D BBIF_0466 Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D BBIF_1123 Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D BBIF_1014 def; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D BBIF_0174 Polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D BBIF_0877 putative carbon-nitrogen hydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D BBIF_0449 ATPase associated with various cellular activities, AAA3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D BBIF_0669 conserved hypothetical protein with AAA3 domain K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D BBIF_0540 67 kDa myosin-cross-reactive antigen family protein K10254 ohyA; oleate hydratase [EC:4.2.1.53]
D BBIF_0920 possible sugar kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D BBIF_0246 fkbP1; peptidylprolyl isomerase, FKBP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D BBIF_0748 fkbP2; Peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D BBIF_0602 conserved hypothetical protein K17810 asl; D-aspartate ligase [EC:6.3.1.12]
D BBIF_1755 pacL2; Calcium-transporting ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D BBIF_0369 magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
D BBIF_1328 cation transporter, E1-E2 family ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
D BBIF_0643 ctpE; cation-transporting ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D BBIF_0847 SUF system FeS assembly protein, NifU family K04488 iscU; nitrogen fixation protein NifU and related proteins
D BBIF_1460 Pyridine nucleotide-disulfide oxidoreductase K21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
D BBIF_1566 nrdI; NrdI protein K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D BBIF_0299 Alanine racemase K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
D BBIF_1626 ubiB; ubiquinone biosynthesis protein K03688 ubiB; ubiquinone biosynthesis protein
C 99988 Secondary metabolism
C 99999 Others
D BBIF_1115 putative phospholipase/carboxylesterase K06999 K06999; phospholipase/carboxylesterase
D BBIF_1122 phospholipase/carboxylesterase K06999 K06999; phospholipase/carboxylesterase
D BBIF_1751 Phospholipase/carboxylesterase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D BBIF_0672 cspA; Cold shock protein K03704 cspA; cold shock protein
D BBIF_0678 cspB; Cold shock protein K03704 cspA; cold shock protein
D BBIF_0073 putative phage anti-repressor protein K07741 antB; anti-repressor protein
C 99974 Translation
C 99975 Protein processing
D BBIF_1180 tig; Trigger factor K03545 tig; trigger factor
D BBIF_0523 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D BBIF_1565 nrdH; Glutaredoxin K06191 nrdH; glutaredoxin-like protein NrdH
D BBIF_1169 Mg chelatase, ChlI subunit K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D BBIF_1623 protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC
D BBIF_0908 DNA-(apurinic or apyrimidinic site) lyase K07457 K07457; endonuclease III related protein
D BBIF_1170 putative endonuclease K07460 yraN; putative endonuclease
D BBIF_1168 SMF family protein K04096 smf; DNA processing protein
D BBIF_1144 SMF family protein K04096 smf; DNA processing protein
D BBIF_0696 AAA family ATPase K07478 ycaJ; putative ATPase
D BBIF_0064 putative integrase K07482 K07482; transposase, IS30 family
D BBIF_0808 Transposase K07482 K07482; transposase, IS30 family
D BBIF_1137 putative transposase K07483 K07483; transposase
D BBIF_0406 transposase IS3/IS911 family protein K07483 K07483; transposase
D BBIF_0812 conserved hypothetical protein with transposase domain K07483 K07483; transposase
D BBIF_0881 putative transposase K07485 K07485; transposase
D BBIF_0057 transposase, mutator type K07493 K07493; putative transposase
D BBIF_0407 transposase, mutator type K07493 K07493; putative transposase
D BBIF_0408 transposase, mutator type K07493 K07493; putative transposase
D BBIF_0056 Transposase K07497 K07497; putative transposase
D BBIF_0129 Integrase K07497 K07497; putative transposase
D BBIF_0409 conserved hypothetical protein containing integrase core domain K07497 K07497; putative transposase
D BBIF_1138 Conserved hypothetical protein K07497 K07497; putative transposase
D BBIF_0813 conserved hypothetical protein K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D BBIF_0189 aap1; amino acid permease K03293 TC.AAT; amino acid transporter, AAT family
D BBIF_1296 Amino acid transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D BBIF_0799 Low-affinity inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D BBIF_0975 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D BBIF_0820 pbuX; Xanthine/uracil/vitamin C permease K03458 TC.NCS2; nucleobase:cation symporter-2, NCS2 family
C 99978 Cell growth
D BBIF_1781 r3H domain-containing protein K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D BBIF_0627 GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D BBIF_0434 Conserved hypothetical protein containing ACT binding domain K07166 K07166; ACT domain-containing protein
D BBIF_0853 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
C 99994 Others
D BBIF_1431 PhoU_like phosphate uptake regulator K02039 phoU; phosphate transport system protein
D BBIF_0776 terC; Tellurium resistance protein terC K05794 terC; tellurite resistance protein TerC
D BBIF_0588 copper homeostasis protein K06201 cutC; copper homeostasis protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D BBIF_0843 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D BBIF_0844 sufD; FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D BBIF_0197 Ribonuclease BN-like family K07058 K07058; membrane protein
D BBIF_1571 lemA; LemA protein K03744 lemA; LemA protein
D BBIF_1731 protein with the SNARE associated Golgi protein domain-related protein K03975 dedA; membrane-associated protein
D BBIF_0143 putative ABC-2 type transporter K01421 yhgE; putative membrane protein
D BBIF_0144 presumable ABC-2 type transporter K01421 yhgE; putative membrane protein
D BBIF_1320 conserved hypothetical protein K08972 K08972; putative membrane protein
D BBIF_1283 conserved hypothetical protein K08986 ycgQ; putative membrane protein
C 99997 Function unknown
D BBIF_0861 conserved hypothetical protein K06889 K06889; uncharacterized protein
D BBIF_1238 Integral membrane protein K06890 K06890; uncharacterized protein
D BBIF_1088 Hydrolase (HAD superfamily) K06950 K06950; uncharacterized protein
D BBIF_1719 Phosphohydrolase K06950 K06950; uncharacterized protein
D BBIF_0334 sodium-dicarboxylate symporter K06956 K06956; uncharacterized protein
D BBIF_0965 sodium:dicarboxylate symporter K06956 K06956; uncharacterized protein
D BBIF_0340 RNA binding protein K06960 K06960; uncharacterized protein
D BBIF_1373 conserved hypothetical protein K07005 K07005; uncharacterized protein
D BBIF_1056 Pyridoxamine 5'-phosphate oxidase pdxH K07006 K07006; uncharacterized protein
D BBIF_1125 Hypothetical protein K07069 K07069; uncharacterized protein
D BBIF_0336 hypothetical protein with nitroreductase domain K07078 K07078; uncharacterized protein
D BBIF_1282 permease K07089 K07089; uncharacterized protein
D BBIF_1363 hypothetical protein K07090 K07090; uncharacterized protein
D BBIF_0878 conserved hypothetical protein K07126 K07126; uncharacterized protein
D BBIF_0065 conserved hypothetical protein K07133 K07133; uncharacterized protein
D BBIF_0744 Conserved hypothetical protein with DUF501 domain K09009 K09009; uncharacterized protein
D BBIF_0728 Conserved hypothetical membrane spanning protein K09118 K09118; uncharacterized protein
D BBIF_0435 Conserved hypothetical protein with DUF711 domain K09157 K09157; uncharacterized protein
D BBIF_0882 conserved hypothetical protein with DUF2075 domain K09384 K09384; uncharacterized protein
D BBIF_1057 Conserved hypothetical protein K09974 K09974; uncharacterized protein
D BBIF_0800 Conserved hypothetical protein with DUF47 domain K07220 K07220; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 26, 2024