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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Brachypodium distachyon (stiff brome)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        100841250 DNA-directed RNA polymerase II subunit 1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        100838357 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        100833824 DNA-directed RNA polymerases II, IV and V subunit 3	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        100828839 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X2	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
E        100839628 DNA-directed RNA polymerases II, IV and V subunit 11	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        100843177 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        104583855 DNA-directed RNA polymerases IV and V subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        100821003 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        100845538 DNA-directed RNA polymerases II, IV and V subunit 9A	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        100840396 DNA-directed RNA polymerases II, IV and V subunit 9A	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        100821357 DNA-directed RNA polymerases II, IV and V subunit 9B	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        100844964 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100836489 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100840962 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100831395 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100845664 DNA-directed RNA polymerases II and V subunit 6B	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        100844296 DNA-directed RNA polymerases II and V subunit 6B	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        100837358 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        100842614 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        100843746 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        100844690 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        100828953 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        100828005 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        100822387 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
E        100842842 DNA-directed RNA polymerase IV subunit 1 isoform X1	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        100825545 DNA-directed RNA polymerase V subunit 1	K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] 
E        100822006 DNA-directed RNA polymerases IV and V subunit 2	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        100821466 DNA-directed RNA polymerases IV and V subunit 2	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        100832497 DNA-directed RNA polymerases IV and V subunit 2 isoform X2	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        100839312 DNA-directed RNA polymerases IV and V subunit 2	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        100836334 DNA-directed RNA polymerase V subunit 7	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        100842749 DNA-directed RNA polymerase V subunit 7	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
C    Basal transcription factors
D      TFIIA
E        100827776 transcription initiation factor IIA subunit 1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        100833815 LOW QUALITY PROTEIN: transcription initiation factor IIA subunit 1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        100828994 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
E        100837665 uncharacterized protein LOC100837665	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        100835667 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        100843514 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        100844422 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        100825903 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        100825589 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
E        100828741 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        100844729 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        104583107 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        100836217 TATA-binding protein 2 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100832670 TATA-box-binding protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100837002 TATA-binding protein 2 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100835170 transcription initiation factor TFIID subunit 1 isoform X2	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        100821849 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        100829985 transcription initiation factor TFIID subunit 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        100843773 transcription initiation factor TFIID subunit 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        100837458 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        100830054 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        100831039 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        100844124 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        104584535 transcription initiation factor TFIID subunit 8-like	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        100834532 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        100828639 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        100846337 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        100838901 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        100821508 transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        100821588 transcription initiation factor TFIID subunit 12b isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        100838369 transcription initiation factor TFIID subunit 12 isoform X3	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        100821745 transcription initiation factor TFIID subunit 12 isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        100824647 transcription initiation protein SPT3 homolog	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        100834936 transcription initiation factor IIE subunit alpha	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        100841072 uncharacterized protein LOC100841072	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
E        100827117 transcription initiation factor IIE subunit beta	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
E        100823282 uncharacterized protein LOC100823282	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        100846625 transcription initiation factor IIF subunit alpha isoform X1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        100843935 transcription initiation factor IIF subunit alpha	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        100844677 general transcription factor IIF subunit 2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        100843964 general transcription factor IIF subunit 2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        100845916 general transcription and DNA repair factor IIH subunit TFB1-1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        100833758 general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        100830439 general transcription and DNA repair factor IIH subunit TFB4	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        100827851 general transcription and DNA repair factor IIH subunit TFB2 isoform X1	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        100822542 general transcription and DNA repair factor IIH helicase subunit XPB1	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        100824230 general transcription and DNA repair factor IIH helicase subunit XPD isoform X1	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        100833387 general transcription and DNA repair factor IIH helicase subunit XPD isoform X1	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        104581277 general transcription and DNA repair factor IIH subunit TFB5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        100833383 cyclin-dependent kinase D-1	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        100842017 uncharacterized protein LOC100842017	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        100823414 uncharacterized protein LOC100823414	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        100830061 cyclin-H1-1 isoform X1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        100821382 mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        100831854 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        100822959 mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        112271987 mediator of RNA polymerase II transcription subunit 18 isoform X1	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        100834966 mediator of RNA polymerase II transcription subunit 20a	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        100823677 mediator of RNA polymerase II transcription subunit 22a	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        100840919 mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
D      Middle
E        100825260 mediator of RNA polymerase II transcription subunit 7a	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        100820848 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 10b	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        100827181 mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        100837580 mediator of RNA polymerase II transcription subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        100829137 mediator of RNA polymerase II transcription subunit 14 isoform X2	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        100825427 cyclin-dependent kinase E-1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        100821206 cyclin-C1-1 isoform X2	K15161 CCNC; cyclin-C 
E        100839042 cyclin-C1-1	K15161 CCNC; cyclin-C 
E        100834674 mediator of RNA polymerase II transcription subunit 13 isoform X1	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        100841446 mediator of RNA polymerase II transcription subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        100843505 mediator of RNA polymerase II transcription subunit 25 isoform X2	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        100846695 mediator of RNA polymerase II transcription subunit 27 isoform X2	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        100842454 mediator of RNA polymerase II transcription subunit 32	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        100828721 mediator of RNA polymerase II transcription subunit 33A	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        100826944 mediator of RNA polymerase II transcription subunit 33A isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        100824513 histone acetyltransferase GCN5	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        100839256 transcription-associated protein 1 isoform X1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        100827824 transcriptional adapter ADA2	K11314 TADA2A; transcriptional adapter 2-alpha 
E        100821849 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        100829985 transcription initiation factor TFIID subunit 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        100843773 transcription initiation factor TFIID subunit 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        100837458 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        100830054 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        100831039 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        100834532 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        100828639 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        100846337 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        100821508 transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        100821588 transcription initiation factor TFIID subunit 12b isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        100838369 transcription initiation factor TFIID subunit 12 isoform X3	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        100821745 transcription initiation factor TFIID subunit 12 isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        100836901 SAGA-associated factor 29 homolog A	K11364 SGF29; SAGA-associated factor 29 
E        100826108 protein CHROMATIN REMODELING 5	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        100821187 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        100831999 ubiquitin carboxyl-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        100839023 splicing factor 3B subunit 3 isoform X2	K12830 SF3B3; splicing factor 3B subunit 3 
E        100843379 spliceosome-associated protein 130 A	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        100833895 ATP-dependent helicase BRM	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        100837874 chromatin structure-remodeling complex protein BSH isoform X2	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        100821616 SWI/SNF complex subunit SWI3B isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        100842810 SWI/SNF complex subunit SWI3D isoform X3	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        100826600 SWI/SNF complex subunit SWI3C	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        100844943 SWI/SNF complex subunit SWI3A	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        100832204 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        100833000 actin-related protein 4 isoform X2	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
E        100837874 chromatin structure-remodeling complex protein BSH isoform X2	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        100838479 RNA polymerase II transcriptional coactivator KELP	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        100837805 RNA polymerase II transcriptional coactivator KIWI isoform X2	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        100840292 cell division cycle and apoptosis regulator protein 1 isoform X2	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        100837763 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        100826631 transcription elongation factor SPT4 homolog 1	K15171 SUPT4H1; transcription elongation factor SPT4 
E        100829683 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        100825683 transcription elongation factor SPT6-like isoform X3	K11292 SUPT6H; transcription elongation factor SPT6 
E        100823557 transcription elongation factor SPT6-like isoform X1	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        100826665 polyadenylation and cleavage factor homolog 4	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        100831691 probable cleavage and polyadenylation specificity factor subunit 1 isoform X1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        100846455 cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        100824755 cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        100837853 zinc finger CCCH domain-containing protein 45	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        100838096 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100836069 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100839636 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100822417 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100827362 serine/threonine-protein phosphatase alpha-3 isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100821631 serine/threonine-protein phosphatase PP1 isoform X2	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100829796 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100841528 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100836703 symplekin isoform X1	K06100 SYMPK; symplekin 
E        100827067 symplekin isoform X2	K06100 SYMPK; symplekin 
E        100829441 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        100835512 5'-3' exoribonuclease 3 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        100833686 decapping nuclease DXO homolog, chloroplastic	K14845 RAI1; RAT1-interacting protein 
E        100829471 disease resistance protein RPP13	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        100837117 UPF0400 protein C337.03 isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        100845741 proline-rich protein 36 isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        100829173 regulation of nuclear pre-mRNA domain-containing protein 1B isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        100837105 regulation of nuclear pre-mRNA domain-containing protein 1A	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        100842761 uncharacterized ATP-dependent helicase C29A10.10c	K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] 
E        100838145 peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
E        100824448 peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        100838919 protein PAF1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        100821880 protein CDC73 homolog	K15175 CDC73; parafibromin 
E        100836474 protein CTR9 homolog isoform X1	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        100820835 protein LEO1 homolog	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        100821735 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        104584385 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        100830930 ell-associated factor Eaf isoform X2	K15186 EAF; ELL-associated factor 
E        100832981 cyclin-T1-1 isoform X1	K15188 CCNT; cyclin T 
E        100842969 cyclin-T1-2	K15188 CCNT; cyclin T 
E        100829376 cyclin-T1-3	K15188 CCNT; cyclin T 
E        100845488 cyclin-T1-4 isoform X1	K15188 CCNT; cyclin T 
E        100823057 cyclin-T1-5	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        100832981 cyclin-T1-1 isoform X1	K15188 CCNT; cyclin T 
E        100842969 cyclin-T1-2	K15188 CCNT; cyclin T 
E        100829376 cyclin-T1-3	K15188 CCNT; cyclin T 
E        100845488 cyclin-T1-4 isoform X1	K15188 CCNT; cyclin T 
E        100823057 cyclin-T1-5	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        100828615 probable RNA methyltransferase At5g51130	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        100829244 la-related protein 6B	K15191 LARP7; La-related protein 7 
E        100842995 la-related protein 6B	K15191 LARP7; La-related protein 7 
E        100831659 la-related protein 6B	K15191 LARP7; La-related protein 7 
E        104582867 la-related protein 6A	K15191 LARP7; La-related protein 7 
E        100837225 LOW QUALITY PROTEIN: la-related protein 6C	K15191 LARP7; La-related protein 7 
E        100832981 cyclin-T1-1 isoform X1	K15188 CCNT; cyclin T 
E        100842969 cyclin-T1-2	K15188 CCNT; cyclin T 
E        100829376 cyclin-T1-3	K15188 CCNT; cyclin T 
E        100845488 cyclin-T1-4 isoform X1	K15188 CCNT; cyclin T 
E        100823057 cyclin-T1-5	K15188 CCNT; cyclin T 
D      DBIRD complex
D      Others
E        100845278 TATA-binding protein-associated factor BTAF1 isoform X1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        100835335 nuclear transcription factor Y subunit beta	K21751 DR1; down-regulator of transcription 1 
E        100835219 dr1-associated corepressor	K21752 DRAP1; Dr1-associated corepressor 
E        100823511 dr1-associated corepressor	K21752 DRAP1; Dr1-associated corepressor 
E        100835931 protein SPT2 homolog	K15193 SPTY2D1; protein SPT2 
E        100840940 neurofilament heavy polypeptide	K15193 SPTY2D1; protein SPT2 
E        100827987 RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        100832517 RNA polymerase II C-terminal domain phosphatase-like 1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        100834480 RNA polymerase II C-terminal domain phosphatase-like 2 isoform X4	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        104585249 RNA polymerase II C-terminal domain phosphatase-like 2	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        100836693 RNA polymerase II C-terminal domain phosphatase-like 3	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        100831091 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X2	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        100837063 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        100828475 CTD small phosphatase-like protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        100829084 uncharacterized protein LOC100829084	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        100835092 probable C-terminal domain small phosphatase	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        100837075 protein IWS1 homolog 1	K17498 SPN1; transcription factor SPN1 
E        100830908 transcriptional elongation regulator MINIYO	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        100844572 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        100839818 RNA polymerase II-associated protein 3	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        100837285 RNA polymerase II-associated protein 3 isoform X1	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        100839907 agamous-like MADS-box protein AGL62-like	K12412 MCM1; pheromone receptor transcription factor 
E        100832754 agamous-like MADS-box protein AGL62-like	K12412 MCM1; pheromone receptor transcription factor 
E        100844135 GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        100838715 GPN-loop GTPase QQT1	K24104 GPN; GPN-loop GTPase 
E        100827215 GPN-loop GTPase QQT2	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        100830443 DNA-directed RNA polymerase III subunit 1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        100846820 DNA-directed RNA polymerase III subunit 1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        100839519 DNA-directed RNA polymerase III subunit 2 isoform X1	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        100828268 DNA-directed RNA polymerases I and III subunit rpac1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        100834353 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
E        100839460 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        100837993 DNA-directed RNA polymerase III subunit RPC3	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        100846711 uncharacterized protein LOC100846711 isoform X1	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        100834988 DNA-directed RNA polymerase III subunit RPC4	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        100824963 uncharacterized protein LOC100824963 isoform X2	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        100833252 DNA-directed RNA polymerase III subunit RPC4 isoform X1	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        100836051 uncharacterized protein LOC100836051 isoform X1	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        100840897 DNA-directed RNA polymerase III subunit rpc6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        100832994 DNA-directed RNA polymerase III subunit rpc6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        100844933 glutamic acid-rich protein	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        100831013 DNA-directed RNA polymerase III subunit RPC8	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        100846267 DNA-directed RNA polymerase III subunit RPC8	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        100837108 uncharacterized protein LOC100837108	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        100840316 uncharacterized protein LOC100840316	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        100844964 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100836489 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100840962 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100831395 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100845664 DNA-directed RNA polymerases II and V subunit 6B	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        100844296 DNA-directed RNA polymerases II and V subunit 6B	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        100837358 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        100842614 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        100843746 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        100844690 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        100828953 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        100828005 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        100822387 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        100827085 transcription factor IIIA isoform X2	K09191 GTF3A; general transcription factor IIIA 
E        100845584 transcription factor IIIA isoform X1	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        100836217 TATA-binding protein 2 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100832670 TATA-box-binding protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100837002 TATA-binding protein 2 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100825257 uncharacterized protein LOC100825257	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        100842802 transcription factor IIIB 60 kDa subunit	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        100840180 transcription factor IIIB 90 kDa subunit	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        104581510 uncharacterized protein LOC104581510 isoform X1	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        100846116 uncharacterized protein LOC100846116 isoform X1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        100830814 uncharacterized protein LOC100830814 isoform X2	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        100831287 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        100838866 general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        100833846 uncharacterized protein LOC100833846	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
E        100827200 uncharacterized protein LOC100827200 isoform X1	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        100838866 general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        100831287 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        100821251 uncharacterized protein LOC100821251 isoform X1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        100840721 snRNA-activating protein complex subunit isoform X1	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        100827775 repressor of RNA polymerase III transcription MAF1 homolog isoform X1	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
E        100837203 repressor of RNA polymerase III transcription MAF1 homolog	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        100821444 DNA-directed RNA polymerase I subunit 1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        100834726 DNA-directed RNA polymerase I subunit 2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        100828268 DNA-directed RNA polymerases I and III subunit rpac1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        100834353 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
E        100839460 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        100835360 DNA-directed RNA polymerase I subunit rpa49	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        100830304 uncharacterized protein LOC100830304	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        100824554 DNA-directed RNA polymerase I subunit RPA12	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        100844964 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100836489 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100840962 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100831395 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        100845664 DNA-directed RNA polymerases II and V subunit 6B	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        100844296 DNA-directed RNA polymerases II and V subunit 6B	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        100837358 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        100842614 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        100843746 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        100844690 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        100828953 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        100828005 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        100822387 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        100836217 TATA-binding protein 2 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100832670 TATA-box-binding protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        100837002 TATA-binding protein 2 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
E        100838395 high mobility group B protein 6	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        100827862 RNA polymerase I-specific transcription initiation factor RRN3 isoform X1	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        100831587 upstream activation factor subunit spp27	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        100826631 transcription elongation factor SPT4 homolog 1	K15171 SUPT4H1; transcription elongation factor SPT4 
E        100829683 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        100836141 probable chromatin-remodeling complex ATPase chain	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        100822641 probable chromatin-remodeling complex ATPase chain	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
E        6439777 rpoA; RNA polymerase alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        6439892 rpoB; RNA polymerase beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
E        6439871 rpoC1; RNA polymerase beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        106865719 uncharacterized protein LOC106865719	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
D      Sigma factors
E        100827900 RNA polymerase sigma factor sigA	K03086 rpoD; RNA polymerase primary sigma factor 
E        100821196 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial	K03093 sigI; RNA polymerase sigma-I factor 
E        104582577 RNA polymerase sigma factor sigC isoform X1	K03093 sigI; RNA polymerase sigma-I factor 
E        100823148 LOW QUALITY PROTEIN: RNA polymerase sigma factor sigC-like	K03093 sigI; RNA polymerase sigma-I factor 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        100835667 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        100843514 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        100844422 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        100825903 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        100825589 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
E        100828741 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        100844729 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        104583107 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        100834936 transcription initiation factor IIE subunit alpha	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
#<hr>
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#Last updated: April 9, 2024