+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Branchiostoma floridae (Florida lancelet)</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        118417757 mRNA cap guanine-N7 methyltransferase-like	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        118404722 mRNA-capping enzyme-like	K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] 
E        118410199 cyclin-dependent kinase 7-like	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        118412160 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1-like	K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57] 
E        118422002 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2-like	K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296] 
E        118432618 RNA guanine-N7 methyltransferase activating subunit-like	K18708 FAM103A1; RNMT-activating mini protein 
D      Cap binding complex
E        118409608 nuclear cap-binding protein subunit 1-A-like isoform X1	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        118427503 nuclear cap-binding protein subunit 2-like	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        118417325 cleavage and polyadenylation specificity factor subunit 5 isoform X1	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        118413122 cleavage and polyadenylation specificity factor subunit 6-like isoform X1	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        118423976 polyribonucleotide 5'-hydroxyl-kinase Clp1-like	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        118419083 uncharacterized protein LOC118419083	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        118417111 cleavage and polyadenylation specificity factor subunit 1-like	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        118421160 cleavage and polyadenylation specificity factor subunit 2-like	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        118430430 cleavage and polyadenylation specificity factor subunit 3-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        118429553 cleavage and polyadenylation specificity factor subunit 4-like	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        118419651 pre-mRNA 3'-end-processing factor FIP1-like	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        118430865 pre-mRNA 3' end processing protein WDR33-like	K15542 PFS2; polyadenylation factor subunit 2 
E        118415998 WD repeat-containing protein 82-like	K14962 WDR82; COMPASS component SWD2 
E        118425726 serine/threonine-protein phosphatase alpha-2 isoform isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        118426326 serine/threonine-protein phosphatase PP1-beta catalytic subunit-like isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        118428744 serine/threonine-protein phosphatase alpha-2 isoform-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        118430421 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        118430819 cleavage stimulation factor subunit 1-like isoform X1	K14406 CSTF1; cleavage stimulation factor subunit 1 
E        118422689 cleavage stimulation factor subunit 2-like isoform X1	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        118406872 cleavage stimulation factor subunit 3-like	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        118413513 symplekin-like isoform X1	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        118418531 small nuclear ribonucleoprotein-associated protein B'-like	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        118408433 small nuclear ribonucleoprotein Sm D3-like	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        118407314 small nuclear ribonucleoprotein E	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        118415580 small nuclear ribonucleoprotein F	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        118413295 small nuclear ribonucleoprotein G-like	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        118422975 U7 snRNA-associated Sm-like protein LSm10 isoform X1	K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10 
E        118429778 U7 snRNA-associated Sm-like protein LSm11	K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11 
E        118421160 cleavage and polyadenylation specificity factor subunit 2-like	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        118430430 cleavage and polyadenylation specificity factor subunit 3-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        118422689 cleavage stimulation factor subunit 2-like isoform X1	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        118413513 symplekin-like isoform X1	K06100 SYMPK; symplekin 
E        118409439 histone RNA hairpin-binding protein-like	K18710 SLBP; histone RNA hairpin-binding protein 
D      DRB sensitivity inducing factor (DSIF) complex
E        118425862 transcription elongation factor SPT4-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        118412188 transcription elongation factor SPT5-like	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        118417847 N6-adenosine-methyltransferase subunit METTL3-like isoform X1	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        118411550 N6-adenosine-methyltransferase non-catalytic subunit-like	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
E        118431754 N(6)-adenine-specific methyltransferase METTL4-like isoform X1	K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72] 
E        118426728 RNA N6-adenosine-methyltransferase mettl16-like isoform X1	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        118409568 pre-mRNA-splicing regulator WTAP-like	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        118423305 pre-mRNA-splicing regulator WTAP-like	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        118416986 protein virilizer homolog isoform X1	K22910 VIRMA; protein virilizer 
E        118415546 RNA-binding protein 15-like	K13190 RBM15; RNA-binding protein 15 
E        118415954 uncharacterized protein LOC118415954 isoform X1	K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 
E        118427304 zinc finger CCCH domain-containing protein 13-like isoform X1	K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 
E        118416852 E3 ubiquitin-protein ligase Hakai-like	K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] 
D      Poly(A) addition factors
E        118410046 poly(A) polymerase beta-like	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        118409891 poly(A) RNA polymerase GLD2-like	K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19] 
E        118403501 uncharacterized protein LOC118403501	K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52] 
D      Negative regulators of mRNA 3' end processing
E        118419825 RNA-binding protein 26-like isoform X1	K13192 RBM26; RNA-binding protein 26 
E        118428769 RNA demethylase ALKBH5-like	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        118430725 TAR DNA-binding protein 43-like	K23600 TARDBP; TAR DNA-binding protein 43 
E        118430918 TAR DNA-binding protein 43-like	K23600 TARDBP; TAR DNA-binding protein 43 
C    Other processing factors
D      118428498 probable ATP-dependent RNA helicase DHX40	K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6] 
D      118416025 DNA/RNA-binding protein KIN17-like	K13102 KIN; DNA/RNA-binding protein KIN17 
D      118407204 methyltransferase-like protein 22	K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] 
D      118422628 terminal nucleotidyltransferase 5C-like	K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-] 
D      118422329 zinc finger CCCH domain-containing protein 14-like	K23038 ZC3H14; zinc finger CCCH domain-containing protein 14 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        118427605 RNA-binding protein 8A-like	K12876 RBM8A; RNA-binding protein 8A 
E        118432045 protein mago nashi homolog	K12877 MAGOH; protein mago nashi 
E        118429269 THO complex subunit 4-like	K12881 THOC4; THO complex subunit 4 
E        118420743 spliceosome RNA helicase DDX39B	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        118423850 eukaryotic initiation factor 4A-III	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        118422794 coiled-coil domain-containing protein 174-like isoform X1	K25178 CCDC174; coiled-coil domain-containing protein 174 
E        118417124 protein CASC3-like	K14323 CASC3; protein CASC3 
E        118432695 histone deacetylase complex subunit SAP18-like	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        118422572 pinin-like	K13114 PNN; pinin 
E        118418015 apoptotic chromatin condensation inducer in the nucleus-like isoform X1	K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus 
E        118429094 LOW QUALITY PROTEIN: RNA-binding protein with serine-rich domain 1-A-like	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
E        118422448 serine/arginine repetitive matrix protein 1-like isoform X1	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        118409655 THO complex subunit 1-like	K12878 THOC1; THO complex subunit 1 
E        118418866 THO complex subunit 2-like	K12879 THOC2; THO complex subunit 2 
E        118414108 THO complex subunit 3-like	K12880 THOC3; THO complex subunit 3 
E        118429269 THO complex subunit 4-like	K12881 THOC4; THO complex subunit 4 
E        118426133 THO complex subunit 5 homolog	K13174 THOC5; THO complex subunit 5 
E        118425952 THO complex subunit 6 homolog	K13175 THOC6; THO complex subunit 6 
E        118415247 THO complex subunit 7 homolog isoform X1	K13176 THOC7; THO complex subunit 7 
D      TREX-2 complex
E        118427640 PCI domain-containing protein 2-like	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        118403094 26S proteasome complex subunit SEM1-like	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        118417649 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        118411512 centrin-3	K16466 CETN3; centrin-3 
E        118409172 germinal-center associated nuclear protein-like	K23719 SAC3; nuclear mRNA export protein SAC3 
D      Nuclear pore complex
E        118405224 nucleoprotein TPR-like	K09291 TPR; nucleoprotein TPR 
E        118417093 mRNA export factor-like	K14298 RAE1; mRNA export factor 
E        118416036 protein SEC13 homolog	K14004 SEC13; protein transport protein SEC13 
E        118407240 nucleoporin Nup37-like	K14302 NUP37; nuclear pore complex protein Nup37 
E        118429056 nuclear pore complex protein Nup85-like	K14304 NUP85; nuclear pore complex protein Nup85 
E        118422302 nucleoporin Nup43-like	K14305 NUP43; nuclear pore complex protein Nup43 
E        118419495 nucleoporin p54-like	K14308 NUP54; nuclear pore complex protein Nup54 
E        118419605 nucleoporin p54-like	K14308 NUP54; nuclear pore complex protein Nup54 
E        118419959 nuclear pore glycoprotein p62-like isoform X1	K14306 NUP62; nuclear pore complex protein Nup62 
E        118426666 nucleoporin 88-like	K14318 NUP88; nuclear pore complex protein Nup88 
E        118417503 nuclear pore complex protein Nup93-like isoform X1	K14309 NUP93; nuclear pore complex protein Nup93 
E        118419408 nuclear pore complex protein Nup98-Nup96-like	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        118412946 nuclear pore complex protein Nup107-like	K14301 NUP107; nuclear pore complex protein Nup107 
E        118427583 nuclear pore complex protein Nup133-like	K14300 NUP133; nuclear pore complex protein Nup133 
E        118408292 nuclear pore complex protein Nup153-like isoform X1	K14296 NUP153; nuclear pore complex protein Nup153 
E        118432547 nuclear pore complex protein Nup155-like	K14312 NUP155; nuclear pore complex protein Nup155 
E        118413035 nuclear pore complex protein Nup160-like	K14303 NUP160; nuclear pore complex protein Nup160 
E        118427038 nucleoporin NUP35-like	K14313 NUP35; nuclear pore complex protein Nup53 
E        118407157 nuclear pore complex protein Nup205-like	K14310 NUP205; nuclear pore complex protein Nup205 
E        118406540 nuclear pore membrane glycoprotein 210-like	K14314 NUP210; nuclear pore complex protein Nup210 
E        118408632 nuclear pore complex protein Nup214-like isoform X1	K14317 NUP214; nuclear pore complex protein Nup214 
E        118430753 nuclear pore complex protein DDB_G0274915-like	K14316 POM121; nuclear pore complex protein Nup121 
E        118418812 nucleoporin p58/p45-like	K14307 NUPL1; nucleoporin p58/p45 
E        118426276 nucleoporin NDC1-like	K14315 NDC1; nucleoporin NDC1 
E        118427239 nucleoporin SEH1-like	K14299 SEH1; nucleoporin SEH1 
E        118426827 E3 SUMO-protein ligase RanBP2-like isoform X1	K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-] 
E        118424356 aladin-like	K14320 AAAS; aladin 
E        118411512 centrin-3	K16466 CETN3; centrin-3 
E        118429623 nucleoporin GLE1-like	K18723 GLE1; nucleoporin GLE1 
E        118427773 uncharacterized protein LOC118427773 isoform X1	K14284 NXF; nuclear RNA export factor 
E        118422917 nuclear RNA export factor 1-like	K14284 NXF; nuclear RNA export factor 
E        118419983 NTF2-related export protein 2-like isoform X1	K14285 NXT1_2; NTF2-related export protein 1/2 
D      Ran-mediated transport factors
E        118426421 GTP-binding nuclear protein Ran	K07936 RAN; GTP-binding nuclear protein Ran 
E        118411231 acidic leucine-rich nuclear phosphoprotein 32 family member B-like isoform X1	K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D 
E        118431358 ELAV-like protein 1 isoform X1	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        118404040 FAS-associated factor 2-like isoform X1	K18726 FAF2; FAS-associated factor 2 
E        118431801 transitional endoplasmic reticulum ATPase isoform X1	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        118409950 protein-lysine methyltransferase METTL21D-like	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        118429616 exportin-1-like isoform X1	K14290 XPO1; exportin-1 
E        118413141 exportin-7-like isoform X1	K18460 XPO7; exportin-7 
E        118420252 ran GTPase-activating protein 1-like	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        118411466 eukaryotic translation initiation factor 4E-like isoform X1	K03259 EIF4E; translation initiation factor 4E 
E        118427494 eukaryotic translation initiation factor 4E type 2-like	K03259 EIF4E; translation initiation factor 4E 
E        118426889 ATP-dependent RNA helicase eIF4A-like	K03257 EIF4A; translation initiation factor 4A 
E        118427208 eukaryotic initiation factor 4A-I-like isoform X1	K03257 EIF4A; translation initiation factor 4A 
E        118413197 eukaryotic translation initiation factor 4 gamma 2-like isoform X1	K03260 EIF4G; translation initiation factor 4G 
E        118430067 eukaryotic translation initiation factor 4 gamma 1-like	K03260 EIF4G; translation initiation factor 4G 
E        118430563 eukaryotic translation initiation factor 4 gamma 3-like isoform X1	K03260 EIF4G; translation initiation factor 4G 
E        118403312 eukaryotic translation initiation factor 4B-like isoform X1	K03258 EIF4B; translation initiation factor 4B 
E        118425903 eukaryotic translation initiation factor 4H-like isoform X1	K24086 EIF4H; translation initiation factor 4H 
E        118428271 eukaryotic translation initiation factor 4H-like	K24086 EIF4H; translation initiation factor 4H 
E        118411331 eukaryotic translation initiation factor 4E-binding protein 2-like	K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2 
E        118426509 eukaryotic translation initiation factor 4E transporter-like isoform X1	K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter 
E        118416077 protein angel homolog 2-like isoform X1	K18729 ANGEL; protein angel 
E        118426892 fragile X mental retardation syndrome-related protein 1-like	K15516 FMR; fragile X mental retardation protein 
E        118419138 cytoplasmic FMR1-interacting protein 2-like	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        118429281 gem-associated protein 5-like	K13133 GEMIN5; gem associated protein 5 
E        118414793 cytoplasmic polyadenylation element-binding protein 2-like isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        118410797 cytoplasmic polyadenylation element-binding protein 1-like isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        118428144 ATP-dependent RNA helicase DDX3X-like isoform X1	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        118430257 GRB10-interacting GYF protein 2-like isoform X1	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        118404252 polyadenylate-binding protein 4-like isoform X1	K13126 PABPC; polyadenylate-binding protein 
E        118431411 polyadenylate-binding protein-interacting protein 1-like isoform X1	K14322 PAIP1; polyadenylate-binding protein-interacting protein 1 
E        118413428 polyadenylate-binding protein-interacting protein 2-like isoform X1	K27470 PAIP2; polyadenylate-binding protein-interacting protein 2 
E        118422040 LOW QUALITY PROTEIN: helicase SKI2W-like	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        118406599 deformed epidermal autoregulatory factor 1 homolog isoform X1	K23041 DEAF1; deformed epidermal autoregulatory factor 1 
E        118420330 malignant T-cell-amplified sequence 1-like	K07575 MCTS; malignant T-cell-amplified sequence 
E        118425518 density-regulated protein-like	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
E        118419359 APOBEC1 complementation factor-like	K24978 A1CF; APOBEC1 complementation factor 
E        118419774 APOBEC1 complementation factor-like	K24978 A1CF; APOBEC1 complementation factor 
D      Other transport factors
E        118424082 partner of Y14 and mago-like isoform X1	K14294 WIBG; partner of Y14 and mago 
E        118403469 heterogeneous nuclear ribonucleoprotein A3 homolog 1-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        118404741 DAZ-associated protein 1-like isoform X1	K14411 MSI; RNA-binding protein Musashi 
E        118425463 RNA-binding protein Musashi homolog 2-like isoform X1	K14411 MSI; RNA-binding protein Musashi 
E        118407912 proline and serine-rich protein 1-like isoform X1	K14416 HBS1; elongation factor 1 alpha-like protein 
E        118425761 protein pelota-like	K06965 PELO; protein pelota 
E        118418057 polyadenylate-binding protein 2-B-like isoform X1	K14396 PABPN1; polyadenylate-binding protein 2 
E        118430872 ATP-dependent RNA helicase DDX19B-like	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        118420439 pre-mRNA-splicing factor SYF1-like	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        118424062 SAP domain-containing ribonucleoprotein-like isoform X1	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        118414946 regulator of chromosome condensation-like isoform X1	K11493 RCC1; regulator of chromosome condensation 
E        118410904 regulator of chromosome condensation-like	K11493 RCC1; regulator of chromosome condensation 
E        118428193 regulator of chromosome condensation-like	K11493 RCC1; regulator of chromosome condensation 
E        118419196 regulator of chromosome condensation-like	K11493 RCC1; regulator of chromosome condensation 
E        118407512 la-related protein 6-like	K18733 LARP6; la-related protein 6 
E        118403122 transcriptional activator protein Pur-beta-like isoform X1	K21772 PURA; transcriptional activator protein Pur-alpha 
E        118429495 uncharacterized protein LOC118429495	K22414 POLDIP3; polymerase delta-interacting protein 3 
E        118413551 zinc finger CCCH domain-containing protein 11A-like	K22415 ZC3H11; zinc finger CCCH domain-containing protein 11 
E        118429662 leukocyte receptor cluster member 8 homolog isoform X1	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        118414992 eukaryotic peptide chain release factor subunit 1	K03265 ETF1; peptide chain release factor subunit 1 
E        118428850 eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like isoform X1	K03267 ERF3; peptide chain release factor subunit 3 
E        118409889 regulator of nonsense transcripts 1-like isoform X1	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        118415718 regulator of nonsense transcripts 2-like isoform X1	K14327 UPF2; regulator of nonsense transcripts 2 
E        118428173 regulator of nonsense transcripts 3B-like	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        118411223 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        118413730 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like isoform X1	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        118413024 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        118404412 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma-like isoform X1	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        118417691 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta-like	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        118427407 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit delta-like isoform X1	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        118411853 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform-like isoform X1	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        118417329 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform-like isoform X1	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        118429333 serine/threonine-protein kinase SMG1-like	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        118404059 protein SMG5-like isoform X1	K11125 SMG5; protein SMG5 
E        118427313 telomerase-binding protein EST1A-like isoform X1	K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
E        118422079 protein SMG7-like	K14409 SMG7; protein SMG7 
E        118410328 protein smg8-like isoform X1	K18734 SMG8; protein SMG8 
E        118421216 protein SMG9-like	K18735 SMG9; protein SMG9 
E        118430257 GRB10-interacting GYF protein 2-like isoform X1	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        118411911 selenocysteine insertion sequence-binding protein 2-like isoform X1	K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2 
E        118414151 probable ATP-dependent RNA helicase DHX34	K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6] 
E        118429112 GTP-binding protein 1-like	K24887 GTPBP1; GTP-binding protein 1 
C    Factors involved in mRNA localization
D      Cargo complex
E        118431499 pumilio homolog 3-like	K14844 PUF6; pumilio homology domain family member 6 
E        118412422 unconventional myosin-Va-like	K10357 MYO5; myosin V 
E        118415280 protein bicaudal D homolog 2-like isoform X1	K18739 BICD; protein bicaudal D 
E        118416111 protein bicaudal D homolog 2-like	K18739 BICD; protein bicaudal D 
E        118420015 uncharacterized protein LOC118420015	K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 
D      Factors that have mRNA localization signals
E        118412592 actin, muscle-like	K05692 ACTB_G1; actin beta/gamma 1 
E        118404043 actin-2-like	K05692 ACTB_G1; actin beta/gamma 1 
E        118424559 actin, cytoplasmic A3a isoform X1	K05692 ACTB_G1; actin beta/gamma 1 
E        118424560 actin CyI, cytoplasmic-like	K05692 ACTB_G1; actin beta/gamma 1 
E        118428830 actin, cytoplasmic	K05692 ACTB_G1; actin beta/gamma 1 
E        118428928 actin-3-like	K05692 ACTB_G1; actin beta/gamma 1 
E        118428930 actin, adductor muscle-like	K05692 ACTB_G1; actin beta/gamma 1 
E        118428931 actin-1-like	K05692 ACTB_G1; actin beta/gamma 1 
E        118428932 actin-3-like	K05692 ACTB_G1; actin beta/gamma 1 
E        118428933 actin-3-like	K05692 ACTB_G1; actin beta/gamma 1 
E        118428934 actin, cytoplasmic-like	K05692 ACTB_G1; actin beta/gamma 1 
E        118428935 actin, cytoplasmic-like	K05692 ACTB_G1; actin beta/gamma 1 
E        118429842 actin-5-like isoform X1	K05692 ACTB_G1; actin beta/gamma 1 
E        118421789 actin-2-like	K05692 ACTB_G1; actin beta/gamma 1 
E        118430578 actin-2-like	K05692 ACTB_G1; actin beta/gamma 1 
E        118430581 actin, cytoplasmic-like	K05692 ACTB_G1; actin beta/gamma 1 
E        118430584 actin-2-like	K05692 ACTB_G1; actin beta/gamma 1 
E        118431028 actin, cytoskeletal 3-like isoform X1	K05692 ACTB_G1; actin beta/gamma 1 
E        118409117 non-neuronal cytoplasmic intermediate filament protein-like	K07606 VIM; vimentin 
E        118409400 vimentin-like isoform X1	K07606 VIM; vimentin 
E        118432767 non-neuronal cytoplasmic intermediate filament protein-like	K07606 VIM; vimentin 
E        118423047 low molecular weight neuronal intermediate filament-like isoform X1	K07606 VIM; vimentin 
E        118409317 transcriptional regulator Myc-like	K04377 MYC; Myc proto-oncogene protein 
E        118414983 nanos homolog 1-like	K18741 NANOS1; protein nanos 1 
D      Trans-acting binding proteins
E        118420626 far upstream element-binding protein 1-like isoform X1	K13210 FUBP; far upstream element-binding protein 
E        118404505 LOW QUALITY PROTEIN: elongation factor 1-alpha-like	K03231 EEF1A; elongation factor 1-alpha 
E        118404506 elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        118417051 elongation factor 1-alpha 1-like isoform X1	K03231 EEF1A; elongation factor 1-alpha 
E        118419888 elongation factor 1-alpha-like	K03231 EEF1A; elongation factor 1-alpha 
E        118409492 elongation factor 1-gamma-like	K03233 EEF1G; elongation factor 1-gamma 
E        118410051 HCLS1-associated protein X-1-like	K16220 HAX1; HCLS1-associated protein X-1 
E        118427013 arf-GAP domain and FG repeat-containing protein 1-like	K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1 
E        118404522 double-stranded RNA-binding protein Staufen homolog 2-like isoform X1	K17597 STAU; double-stranded RNA-binding protein Staufen 
E        118431252 polypyrimidine tract-binding protein 1-like isoform X1	K13218 PTBP1; polypyrimidine tract-binding protein 1 
E        118414793 cytoplasmic polyadenylation element-binding protein 2-like isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        118410797 cytoplasmic polyadenylation element-binding protein 1-like isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
D      Other mRNA localization factors
E        118426892 fragile X mental retardation syndrome-related protein 1-like	K15516 FMR; fragile X mental retardation protein 
E        118419138 cytoplasmic FMR1-interacting protein 2-like	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        118403595 poly(rC)-binding protein 3-like isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        118413907 caprin-1-like isoform X1	K18743 CAPRIN1; caprin-1 
E        118430668 titin-like	K18748 SSD1; protein SSD1 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        118407933 5'-3' exoribonuclease 1-like	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        118430419 5'-3' exoribonuclease 1-like isoform X1	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        118404592 protein argonaute-2-like isoform X1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        118407485 protein argonaute-2-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        118411466 eukaryotic translation initiation factor 4E-like isoform X1	K03259 EIF4E; translation initiation factor 4E 
E        118427494 eukaryotic translation initiation factor 4E type 2-like	K03259 EIF4E; translation initiation factor 4E 
E        118409889 regulator of nonsense transcripts 1-like isoform X1	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        118428144 ATP-dependent RNA helicase DDX3X-like isoform X1	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        118422589 probable ATP-dependent RNA helicase ddx6 isoform X1	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        118406258 RNA-binding protein MEX3B-like	K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
E        118417322 protein LSM14 homolog B-like isoform X1	K18749 LSM14; protein LSM14 
E        118417308 Wilms tumor protein 1-interacting protein-like isoform X1	K16682 AJUBA; LIM domain-containing protein 
E        118415929 putative helicase MOV-10	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        118416101 putative helicase MOV-10	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        118416311 putative helicase MOV-10	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        118411219 proline-rich nuclear receptor coactivator 2-like	K18751 PNRC2; proline-rich nuclear receptor coactivator 2 
E        118431865 transportin-1-like isoform X1	K18752 TNPO1; transportin-1 
E        118429333 serine/threonine-protein kinase SMG1-like	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        118404059 protein SMG5-like isoform X1	K11125 SMG5; protein SMG5 
E        118427313 telomerase-binding protein EST1A-like isoform X1	K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
E        118422079 protein SMG7-like	K14409 SMG7; protein SMG7 
E        118418079 mRNA decay activator protein ZFP36L2-like	K18753 ZFP36L; butyrate response factor 
E        118422462 protein lin-28 homolog A-like isoform X1	K18754 LIN28; protein lin-28 
E        118423513 uncharacterized protein LOC118423513	K18754 LIN28; protein lin-28 
E        118408460 huntingtin-like	K04533 HD; huntingtin 
E        118408470 huntingtin-like	K04533 HD; huntingtin 
E        118411730 protein bicaudal C homolog 1-like	K18756 BICC1; protein bicaudal C 
E        118403469 heterogeneous nuclear ribonucleoprotein A3 homolog 1-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        118431338 LOW QUALITY PROTEIN: cAMP-dependent protein kinase catalytic subunit alpha-like	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        118419043 la-related protein 1B-like isoform X1	K18757 LARP1; la-related protein 1 
E        118425635 ataxin-2-like protein isoform X1	K23625 ATXN2_2L; ataxin 2/2L 
D      P-body specific factors
E        118410364 m7GpppN-mRNA hydrolase-like	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        118415801 mRNA-decapping enzyme 1A-like	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        118413242 U6 snRNA-associated Sm-like protein LSm1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        118421550 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        118416443 U6 snRNA-associated Sm-like protein LSm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        118430554 U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        118405717 U6 snRNA-associated Sm-like protein LSm5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        118409356 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        118415538 U6 snRNA-associated Sm-like protein LSm8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        118415481 kinesin light chain 1-like isoform X1	K10407 KLC; kinesin light chain 
E        118412422 unconventional myosin-Va-like	K10357 MYO5; myosin V 
E        118415791 tubulin alpha-8 chain-like isoform X1	K07374 TUBA; tubulin alpha 
E        118403403 tubulin alpha-1C chain-like	K07374 TUBA; tubulin alpha 
E        118406986 tubulin alpha-1C chain-like isoform X1	K07374 TUBA; tubulin alpha 
E        118424047 tubulin alpha-1A chain	K07374 TUBA; tubulin alpha 
E        118424112 tubulin alpha-1A chain-like	K07374 TUBA; tubulin alpha 
E        118424136 tubulin alpha-3 chain-like isoform X1	K07374 TUBA; tubulin alpha 
E        118424150 tubulin alpha-1A chain-like	K07374 TUBA; tubulin alpha 
E        118421321 tubulin alpha-1A chain-like	K07374 TUBA; tubulin alpha 
E        118421791 tubulin alpha-1A chain-like	K07374 TUBA; tubulin alpha 
E        118422466 tubulin alpha-1A chain-like	K07374 TUBA; tubulin alpha 
E        118414793 cytoplasmic polyadenylation element-binding protein 2-like isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        118410797 cytoplasmic polyadenylation element-binding protein 1-like isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        118429281 gem-associated protein 5-like	K13133 GEMIN5; gem associated protein 5 
E        118407867 trinucleotide repeat-containing gene 6A protein-like isoform X1	K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
E        118417178 CCR4-NOT transcription complex subunit 1-like isoform X1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        118429077 CCR4-NOT transcription complex subunit 2-like	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        118429124 CCR4-NOT transcription complex subunit 3-like isoform X1	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        118406870 CCR4-NOT transcription complex subunit 4-like	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        118410983 CCR4-NOT transcription complex subunit 6-like isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        118419395 CCR4-NOT transcription complex subunit 7-like	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        118417447 granule associated Rac and RHOG effector protein 1-like	K26671 GARRE1; granule associated Rac and RHOG effector protein 1 
E        118425036 PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        118418895 PAN2-PAN3 deadenylation complex subunit pan3-like	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        118404250 maternal B9.10 protein-like	K14443 TOB; protein Tob/BTG 
E        118429097 protein Tob1-like	K14443 TOB; protein Tob/BTG 
E        118426509 eukaryotic translation initiation factor 4E transporter-like isoform X1	K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter 
E        118406584 protein PAT1 homolog 1-like isoform X1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        118404671 enhancer of mRNA-decapping protein 3-like	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        118417145 enhancer of mRNA-decapping protein 4-like isoform X1	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        118415718 regulator of nonsense transcripts 2-like isoform X1	K14327 UPF2; regulator of nonsense transcripts 2 
E        118428173 regulator of nonsense transcripts 3B-like	K14328 UPF3; regulator of nonsense transcripts 3 
E        118403044 E3 ubiquitin-protein ligase TRIM71-like	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        118416274 uncharacterized protein LOC118416274	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        118416278 uncharacterized protein LOC118416278	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        118404452 LOW QUALITY PROTEIN: uncharacterized protein LOC118404452	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        118423967 RING finger protein nhl-1-like	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        118417177 E3 ubiquitin-protein ligase TRIM71-like isoform X1	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        118426138 E3 ubiquitin-protein ligase TRIM56-like	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        118431520 E3 ubiquitin-protein ligase TRIM71-like	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        118425399 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        118429132 zygote arrest protein 1-like	K18762 ZAR1; zygote arrest protein 1 
E        118404615 YTH domain-containing family protein 3-like isoform X1	K20102 YTHDF; YTH domain-containing family protein 
D      Stress granule specific factors
E        118413105 nucleolysin TIAR-like isoform X1	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        118404252 polyadenylate-binding protein 4-like isoform X1	K13126 PABPC; polyadenylate-binding protein 
E        118404522 double-stranded RNA-binding protein Staufen homolog 2-like isoform X1	K17597 STAU; double-stranded RNA-binding protein Staufen 
E        118426892 fragile X mental retardation syndrome-related protein 1-like	K15516 FMR; fragile X mental retardation protein 
E        118410925 ras GTPase-activating protein-binding protein 2-like	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        118427579 eukaryotic translation initiation factor 2A-like	K15026 EIF2A; translation initiation factor 2A 
E        118409003 eukaryotic translation initiation factor 3 subunit B-like	K03253 EIF3B; translation initiation factor 3 subunit B 
E        118426889 ATP-dependent RNA helicase eIF4A-like	K03257 EIF4A; translation initiation factor 4A 
E        118427208 eukaryotic initiation factor 4A-I-like isoform X1	K03257 EIF4A; translation initiation factor 4A 
E        118423850 eukaryotic initiation factor 4A-III	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        118403312 eukaryotic translation initiation factor 4B-like isoform X1	K03258 EIF4B; translation initiation factor 4B 
E        118413197 eukaryotic translation initiation factor 4 gamma 2-like isoform X1	K03260 EIF4G; translation initiation factor 4G 
E        118430067 eukaryotic translation initiation factor 4 gamma 1-like	K03260 EIF4G; translation initiation factor 4G 
E        118430563 eukaryotic translation initiation factor 4 gamma 3-like isoform X1	K03260 EIF4G; translation initiation factor 4G 
E        118422481 ribosomal protein S6 kinase alpha-3-like isoform X1	K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
E        118411222 guanine nucleotide-binding protein subunit beta-2-like 1	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        118407805 TNF receptor-associated factor 2-like	K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
E        118407806 TNF receptor-associated factor 2-like	K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
E        118407809 TNF receptor-associated factor 2-like	K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
E        118409012 TNF receptor-associated factor 2-like	K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
E        118409013 TNF receptor-associated factor 2-like	K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
E        118409015 TNF receptor-associated factor 2-like	K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
E        118409016 TNF receptor-associated factor 2-like	K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
E        118409017 TNF receptor-associated factor 2-like	K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
E        118409019 TNF receptor-associated factor 2-like	K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
E        118409027 TNF receptor-associated factor 2-like	K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
E        118427773 uncharacterized protein LOC118427773 isoform X1	K14284 NXF; nuclear RNA export factor 
E        118422917 nuclear RNA export factor 1-like	K14284 NXF; nuclear RNA export factor 
E        118425637 histone deacetylase 6-like isoform X1	K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
E        118419264 tudor domain-containing protein 3-like	K18404 TDRD3; tudor domain-containing protein 3 
E        118406197 la-related protein 4-like isoform X1	K18763 LARP4; la-related protein 4 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        118415801 mRNA-decapping enzyme 1A-like	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        118410364 m7GpppN-mRNA hydrolase-like	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        118422589 probable ATP-dependent RNA helicase ddx6 isoform X1	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        118404671 enhancer of mRNA-decapping protein 3-like	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        118417145 enhancer of mRNA-decapping protein 4-like isoform X1	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        118406584 protein PAT1 homolog 1-like isoform X1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        118413242 U6 snRNA-associated Sm-like protein LSm1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        118421550 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        118416443 U6 snRNA-associated Sm-like protein LSm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        118430554 U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        118405717 U6 snRNA-associated Sm-like protein LSm5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        118409356 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        118415538 U6 snRNA-associated Sm-like protein LSm8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        118407933 5'-3' exoribonuclease 1-like	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        118430419 5'-3' exoribonuclease 1-like isoform X1	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        118411812 5'-3' exoribonuclease 2-like isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        118416522 U8 snoRNA-decapping enzyme-like isoform X1	K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64] 
D      Other 5'-3' decay factors
E        118421283 m7GpppX diphosphatase-like isoform X1	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        118429267 probable helicase with zinc finger domain	K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] 
C    3'-5' decay
D      Core exosome factors
E        118408923 exosome complex component CSL4-like	K07573 CSL4; exosome complex component CSL4 
E        118422067 exosome complex component RRP4-like	K03679 RRP4; exosome complex component RRP4 
E        118432466 exosome complex component RRP40-like	K03681 RRP40; exosome complex component RRP40 
E        118417027 exosome complex component RRP41-like	K11600 RRP41; exosome complex component RRP41 
E        118430967 exosome complex component RRP46-like	K12590 RRP46; exosome complex component RRP46 
E        118405079 exosome complex component MTR3-like	K12587 MTR3; exosome complex component MTR3 
E        118418398 exosome complex component RRP42-like	K12589 RRP42; exosome complex component RRP42 
E        118419563 exosome complex component RRP43-like	K12586 RRP43; exosome complex component RRP43 
E        118418789 exosome complex component RRP45-like isoform X1	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        118419575 exosome complex exonuclease RRP44-like	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        118410048 DIS3-like exonuclease 1	K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-] 
E        118430414 exosome component 10-like	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        118420032 nuclear nucleic acid-binding protein C1D-like	K12592 C1D; exosome complex protein LRP1 
E        118417948 M-phase phosphoprotein 6-like	K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type 
E        118415594 probable ATP-dependent RNA helicase DDX60	K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7] 
D      TRAMP complex
E        118417142 terminal nucleotidyltransferase 4B-like isoform X1	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        118411297 zinc finger CCHC domain-containing protein 7-like isoform X1	K12597 AIR1_2; protein AIR1/2 
E        118431630 exosome RNA helicase MTR4-like	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        118422040 LOW QUALITY PROTEIN: helicase SKI2W-like	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        118409911 tetratricopeptide repeat protein 37-like isoform X1	K12600 SKI3; superkiller protein 3 
E        118411265 WD repeat-containing protein 61-like isoform X1	K12602 WDR61; WD repeat-containing protein 61 
D      Ccr4-NOT complex
E        118410983 CCR4-NOT transcription complex subunit 6-like isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        118417178 CCR4-NOT transcription complex subunit 1-like isoform X1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        118429077 CCR4-NOT transcription complex subunit 2-like	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        118429124 CCR4-NOT transcription complex subunit 3-like isoform X1	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        118406870 CCR4-NOT transcription complex subunit 4-like	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        118419395 CCR4-NOT transcription complex subunit 7-like	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        118408337 CCR4-NOT transcription complex subunit 9	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        118417509 CCR4-NOT transcription complex subunit 10-like	K12607 CNOT10; CCR4-NOT transcription complex subunit 10 
D      Pan complex
E        118425036 PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        118418895 PAN2-PAN3 deadenylation complex subunit pan3-like	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        118428912 poly(A)-specific ribonuclease PARN-like	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        118421253 poly(A)-specific ribonuclease PNLDC1-like	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        118430895 ATP-dependent DNA/RNA helicase DHX36-like	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        118404250 maternal B9.10 protein-like	K14443 TOB; protein Tob/BTG 
E        118429097 protein Tob1-like	K14443 TOB; protein Tob/BTG 
E        118420286 nocturnin-like	K18764 NOCT; nocturnin [EC:3.1.3.108] 
E        118414733 3'-5' exoribonuclease 1-like	K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-] 
E        118429274 3'-5' exoribonuclease 1-like	K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-] 
E        118421283 m7GpppX diphosphatase-like isoform X1	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        118406225 2',5'-phosphodiesterase 12-like	K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-] 
E        118429267 probable helicase with zinc finger domain	K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] 
E        118427123 uncharacterized protein LOC118427123	K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6] 
E        118429792 helicase with zinc finger domain 2-like	K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6] 
E        118425103 nuclear exosome regulator NRDE2-like	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        118427263 protein Smaug homolog 1-like isoform X1	K27396 SMG; protein Smaug 
E        118406863 focadhesin-like	K27498 FOCAD; focadhesin 
C    Other degradation factors
D      RNases
E        118422354 ribonuclease ZC3H12A-like	K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] 
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        118420852 ribonuclease 3-like	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        118415849 oligoribonuclease, mitochondrial-like	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
E        118404079 ATP-dependent DNA helicase Q-like SIM	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
E        118408077 ATP-dependent DNA helicase Q-like SIM	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
E        118426164 ATP-dependent DNA helicase Q-like SIM	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
E        118423303 ATP-dependent DNA helicase Q-like 3	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
D      Other RNA degradosome components
E        118430643 enolase-like	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        118423362 polyribonucleotide nucleotidyltransferase 1, mitochondrial-like	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        118405158 ATP-dependent 6-phosphofructokinase, muscle type-like	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        118408458 stress-70 protein, mitochondrial-like	K04043 dnaK; molecular chaperone DnaK 
E        118424526 60 kDa heat shock protein, mitochondrial-like	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        118422067 exosome complex component RRP4-like	K03679 RRP4; exosome complex component RRP4 
E        118408923 exosome complex component CSL4-like	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        118417027 exosome complex component RRP41-like	K11600 RRP41; exosome complex component RRP41 
E        118418398 exosome complex component RRP42-like	K12589 RRP42; exosome complex component RRP42 
D      Others
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#Last updated: April 25, 2024