+D GENES KO
#
KEGG Orthology (KO) - Bulleidia sp. zg-1006
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:bull00010]
D JOS54_04710 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D JOS54_05490 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D JOS54_02325 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D JOS54_00440 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D JOS54_02765 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D JOS54_01365 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D JOS54_00860 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D JOS54_00260 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D JOS54_00855 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D JOS54_00695 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D JOS54_00865 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D JOS54_02330 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D JOS54_03015 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D JOS54_04560 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D JOS54_05145 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D JOS54_04900 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D JOS54_00840 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D JOS54_03700 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D JOS54_00510 family 1 glycosylhydrolase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D JOS54_04795 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D JOS54_04785 PTS transporter subunit EIIC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D JOS54_05210 PTS transporter subunit EIIC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D JOS54_00210 hypothetical protein K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
C 00020 Citrate cycle (TCA cycle)
D JOS54_04560 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:bull00030]
D JOS54_05490 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D JOS54_04270 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D JOS54_05230 pentose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D JOS54_07000 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D JOS54_07005 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D JOS54_00915 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D JOS54_04225 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D JOS54_05140 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D JOS54_00840 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D JOS54_03700 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D JOS54_00190 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D JOS54_04465 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D JOS54_04470 sugar kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D JOS54_02765 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D JOS54_01365 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D JOS54_02325 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D JOS54_00440 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:bull00040]
D JOS54_01960 uxaC; glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D JOS54_01945 uxuA; mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D JOS54_01950 mannitol dehydrogenase family protein K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D JOS54_01935 uidA; beta-glucuronidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31]
D JOS54_03750 L-ribulose-5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D JOS54_03755 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D JOS54_04270 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D JOS54_05230 pentose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:bull00051]
D JOS54_02325 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D JOS54_00440 diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D JOS54_06345 1-phosphofructokinase family hexose kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D JOS54_02765 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D JOS54_01365 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D JOS54_00860 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D JOS54_00915 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D JOS54_00750 PTS sugar transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D JOS54_00740 PTS fructose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
C 00052 Galactose metabolism [PATH:bull00052]
D JOS54_00840 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D JOS54_03700 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D JOS54_04710 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D JOS54_05285 melA; alpha-galactosidase K07406 melA; alpha-galactosidase [EC:3.2.1.22]
D JOS54_02325 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D JOS54_07270 class II D-tagatose-bisphosphate aldolase, non-catalytic subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D JOS54_07305 PTS sugar transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D JOS54_07295 agaB; PTS N-acetylgalactosamine transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D JOS54_04455 PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D JOS54_07290 PTS sugar transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D JOS54_04450 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D JOS54_07285 PTS system mannose/fructose/sorbose family transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component
D JOS54_04445 PTS system mannose/fructose/sorbose family transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component
D JOS54_07310 SIS domain-containing protein K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:bull00053]
D JOS54_01935 uidA; beta-glucuronidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31]
D JOS54_01150 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D JOS54_01280 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D JOS54_03775 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D JOS54_01155 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D JOS54_01285 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D JOS54_03765 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D JOS54_01160 PTS transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D JOS54_01290 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D JOS54_03770 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D JOS54_03780 ulaG; L-ascorbate 6-phosphate lactonase K03476 ulaG; L-ascorbate 6-phosphate lactonase [EC:3.1.1.-]
D JOS54_03750 L-ribulose-5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D JOS54_03755 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
C 00500 Starch and sucrose metabolism [PATH:bull00500]
D JOS54_06455 PTS lactose/cellobiose transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D JOS54_06515 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D JOS54_01235 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D JOS54_06510 PTS sugar transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component
D JOS54_01930 PTS sugar transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component
D JOS54_00510 family 1 glycosylhydrolase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D JOS54_02515 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D JOS54_02520 glgD; glucose-1-phosphate adenylyltransferase subunit GlgD K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D JOS54_02525 glgA; glycogen synthase GlgA K00703 glgA; starch synthase [EC:2.4.1.21]
D JOS54_02505 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D JOS54_07375 glgP; glycogen/starch/alpha-glucan family phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D JOS54_02510 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D JOS54_07350 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D JOS54_04795 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D JOS54_05210 PTS transporter subunit EIIC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D JOS54_00840 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D JOS54_03700 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D JOS54_04710 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D JOS54_05490 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:bull00520]
D JOS54_02395 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D JOS54_04795 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D JOS54_07315 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D JOS54_04835 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D JOS54_05745 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D JOS54_00185 NTP transferase domain-containing protein K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D JOS54_01405 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D JOS54_01375 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D JOS54_03595 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D JOS54_07095 N-acetylmannosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D JOS54_04785 PTS transporter subunit EIIC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D JOS54_05210 PTS transporter subunit EIIC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D JOS54_00210 hypothetical protein K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D JOS54_04710 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D JOS54_00840 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D JOS54_03700 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D JOS54_05490 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D JOS54_02515 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D JOS54_02520 glgD; glucose-1-phosphate adenylyltransferase subunit GlgD K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:bull00620]
D JOS54_04560 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D JOS54_07470 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D JOS54_04900 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D JOS54_03410 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D JOS54_04845 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D JOS54_02330 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D JOS54_04890 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D JOS54_05145 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D JOS54_03915 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D JOS54_03015 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:bull00630]
D JOS54_00230 HAD-IA family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D JOS54_02775 HAD hydrolase-like protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D JOS54_04465 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
C 00640 Propanoate metabolism [PATH:bull00640]
D JOS54_03410 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D JOS54_04845 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D JOS54_07470 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D JOS54_05145 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
C 00650 Butanoate metabolism [PATH:bull00650]
D JOS54_05065 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D JOS54_04900 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D JOS54_07470 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D JOS54_04560 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00660 C5-Branched dibasic acid metabolism
C 00562 Inositol phosphate metabolism [PATH:bull00562]
D JOS54_07490 Gfo/Idh/MocA family oxidoreductase K22230 iolU; scyllo-inositol 2-dehydrogenase (NADP+) [EC:1.1.1.-]
D JOS54_00860 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:bull00190]
D JOS54_00130 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D JOS54_00140 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D JOS54_00135 atpG; ATP synthase F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D JOS54_00125 atpH; ATP synthase F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D JOS54_00145 atpC; ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D JOS54_00110 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D JOS54_00120 ATP synthase F0 subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D JOS54_00115 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D JOS54_04525 V-type ATP synthase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D JOS54_04520 V-type ATP synthase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D JOS54_04550 V-type ATPase subunit K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D JOS54_04515 V-type ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D JOS54_04535 V-type ATP synthase subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D JOS54_04545 ATPase V K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D JOS54_04540 ATPase K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D JOS54_04940 Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D JOS54_01710 putative manganese-dependent inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
D JOS54_04995 putative manganese-dependent inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms [PATH:bull00710]
D JOS54_00855 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D JOS54_00260 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D JOS54_02765 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D JOS54_01365 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D JOS54_07000 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D JOS54_07005 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D JOS54_00915 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D JOS54_00860 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D JOS54_04270 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D JOS54_05230 pentose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D JOS54_03015 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
C 00720 Carbon fixation pathways in prokaryotes [PATH:bull00720]
D JOS54_04560 nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D JOS54_03015 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D JOS54_00065 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D JOS54_01320 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D JOS54_04845 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D JOS54_03410 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:bull00680]
D JOS54_00865 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D JOS54_02765 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D JOS54_01365 fba; class II fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D JOS54_02325 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D JOS54_03410 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D JOS54_04845 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D JOS54_00695 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D JOS54_02155 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71]
C 00910 Nitrogen metabolism [PATH:bull00910]
D JOS54_00165 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D JOS54_01565 FAD-dependent oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D JOS54_01845 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00920 Sulfur metabolism [PATH:bull00920]
D JOS54_03415 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D JOS54_07105 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D JOS54_07110 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:bull00061]
D JOS54_00945 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00062 Fatty acid elongation [PATH:bull00062]
D JOS54_05065 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
C 00071 Fatty acid degradation [PATH:bull00071]
D JOS54_05065 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D JOS54_04900 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:bull00561]
D JOS54_01980 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D JOS54_04500 RecX family transcriptional regulator K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D JOS54_04510 glycosyltransferase K13677 dgs; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-glucosyltransferase [EC:2.4.1.208]
D JOS54_05285 melA; alpha-galactosidase K07406 melA; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:bull00564]
D JOS54_03855 NAD(P)-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D JOS54_01980 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D JOS54_02535 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D JOS54_02845 Gfo/Idh/MocA family oxidoreductase K00968 PCYT1; choline-phosphate cytidylyltransferase [EC:2.7.7.15]
D JOS54_02255 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D JOS54_02060 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D JOS54_06325 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:bull00600]
D JOS54_05285 melA; alpha-galactosidase K07406 melA; alpha-galactosidase [EC:3.2.1.22]
D JOS54_02395 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:bull00230]
D JOS54_00840 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D JOS54_03700 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D JOS54_00190 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D JOS54_04610 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D JOS54_06750 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D JOS54_05020 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D JOS54_01445 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D JOS54_03540 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D JOS54_03245 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D JOS54_06695 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D JOS54_01820 guaC; GMP reductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D JOS54_02925 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D JOS54_01495 hypothetical protein K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D JOS54_01695 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D JOS54_04605 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D JOS54_02235 hypothetical protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D JOS54_05130 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D JOS54_07795 bifunctional metallophosphatase/5'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D JOS54_07145 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D JOS54_01845 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:bull00240]
D JOS54_02240 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D JOS54_06005 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D JOS54_03865 (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D JOS54_03320 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D JOS54_05135 nucleoside phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D JOS54_05175 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D JOS54_01425 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D JOS54_01540 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D JOS54_07795 bifunctional metallophosphatase/5'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D JOS54_01195 pseudouridine-5'-phosphate glycosidase K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D JOS54_05105 nucleoside hydrolase K01250 rihA; pyrimidine-specific ribonucleoside hydrolase [EC:3.2.2.-]
D JOS54_03985 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D JOS54_01495 hypothetical protein K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D JOS54_01695 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D JOS54_03670 dCMP deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D JOS54_07755 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D JOS54_05005 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D JOS54_02875 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:bull00250]
D JOS54_07445 aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D JOS54_01565 FAD-dependent oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D JOS54_00165 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
C 00260 Glycine, serine and threonine metabolism [PATH:bull00260]
D JOS54_01410 low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D JOS54_00695 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D JOS54_03345 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
C 00270 Cysteine and methionine metabolism [PATH:bull00270]
D JOS54_07105 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D JOS54_07110 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D JOS54_05510 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D JOS54_06755 5'-methylthioadenosine/adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D JOS54_01205 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D JOS54_06160 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_07615 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_05035 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_05145 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D JOS54_03345 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
C 00280 Valine, leucine and isoleucine degradation
D JOS54_05065 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
C 00290 Valine, leucine and isoleucine biosynthesis
C 00300 Lysine biosynthesis [PATH:bull00300]
D JOS54_06805 Sapep family Mn(2+)-dependent dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D JOS54_00640 Sapep family Mn(2+)-dependent dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D JOS54_05215 Sapep family Mn(2+)-dependent dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D JOS54_02070 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D JOS54_04230 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D JOS54_05725 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation
D JOS54_05065 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
C 00220 Arginine biosynthesis [PATH:bull00220]
D JOS54_01840 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D JOS54_01835 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D JOS54_01845 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D JOS54_00165 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
C 00330 Arginine and proline metabolism [PATH:bull00330]
D JOS54_07085 hydantoinase/oxoprolinase family protein K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D JOS54_02280 proline iminopeptidase-family hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
C 00340 Histidine metabolism
D JOS54_05205 flavocytochrome c K17363 urdA; urocanate reductase [EC:1.3.99.33]
C 00350 Tyrosine metabolism
D JOS54_04900 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00360 Phenylalanine metabolism
C 00380 Tryptophan metabolism
D JOS54_05065 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:bull00400]
D JOS54_05335 aroF; 3-deoxy-7-phosphoheptulonate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D JOS54_05350 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D JOS54_05325 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D JOS54_05330 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D JOS54_05345 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D JOS54_07430 chorismate mutase K04516 AROA1; chorismate mutase [EC:5.4.99.5]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
C 00430 Taurine and hypotaurine metabolism [PATH:bull00430]
D JOS54_04845 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D JOS54_03410 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
D JOS54_02845 Gfo/Idh/MocA family oxidoreductase K00968 PCYT1; choline-phosphate cytidylyltransferase [EC:2.7.7.15]
C 00450 Selenocompound metabolism [PATH:bull00450]
D JOS54_04320 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D JOS54_02960 FAD-dependent oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D JOS54_00200 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism
D JOS54_07445 aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
C 00470 D-Amino acid metabolism [PATH:bull00470]
D JOS54_06395 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D JOS54_05015 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D JOS54_02385 alanine racemase K21898 orr; ornithine racemase [EC:5.1.1.12]
C 00480 Glutathione metabolism
D JOS54_02900 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:bull00511]
D JOS54_02395 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis
D JOS54_00185 NTP transferase domain-containing protein K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D JOS54_01405 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:bull00550]
D JOS54_01375 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D JOS54_03595 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D JOS54_02770 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D JOS54_04620 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K23169 murD2; UDP-N-acetylmuramoyl-L-alanine---L-glutamate ligase [EC:6.3.2.53]
D JOS54_02070 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D JOS54_04230 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D JOS54_05015 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D JOS54_05725 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D JOS54_02250 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D JOS54_06720 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D JOS54_01685 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D JOS54_01815 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D JOS54_04645 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D JOS54_03600 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D JOS54_02040 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D JOS54_03850 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D JOS54_04650 penicillin-binding protein K08724 pbpB; penicillin-binding protein 2B
D JOS54_01860 hypothetical protein K05364 pbpA; penicillin-binding protein A
D JOS54_06780 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D JOS54_03485 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D JOS54_06315 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_07760 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_07830 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_01230 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_04490 DUF1727 domain-containing protein K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D JOS54_04485 glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D JOS54_03215 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein K05363 murM; serine/alanine adding enzyme [EC:2.3.2.10]
C 00552 Teichoic acid biosynthesis [PATH:bull00552]
D JOS54_06720 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D JOS54_01685 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D JOS54_01815 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D JOS54_02855 LCP family protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D JOS54_04500 RecX family transcriptional regulator K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D JOS54_02810 LicD family protein K25651 licD3; teichoic acid ribitol-phosphate transferase
D JOS54_02815 LicD family protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:bull00543]
D JOS54_07105 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:bull00730]
D JOS54_02945 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D JOS54_02950 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D JOS54_03515 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D JOS54_04275 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D JOS54_04265 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D JOS54_07145 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:bull00740]
D JOS54_03175 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
C 00750 Vitamin B6 metabolism [PATH:bull00750]
D JOS54_00485 pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
C 00760 Nicotinate and nicotinamide metabolism [PATH:bull00760]
D JOS54_02665 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D JOS54_06750 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D JOS54_05020 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D JOS54_02670 hypothetical protein K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D JOS54_06825 nudC; NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D JOS54_02675 NAD(+) synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D JOS54_02660 cysteine hydrolase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D JOS54_00205 NAD(+)/NADH kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:bull00770]
D JOS54_05360 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D JOS54_05070 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D JOS54_05075 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D JOS54_02580 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D JOS54_02310 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
C 00780 Biotin metabolism [PATH:bull00780]
D JOS54_00945 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis
C 00670 One carbon pool by folate [PATH:bull00670]
D JOS54_00065 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D JOS54_01320 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D JOS54_03025 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D JOS54_04305 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:bull00860]
D JOS54_01935 uidA; beta-glucuronidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31]
D JOS54_01535 hypothetical protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:bull00900]
D JOS54_03515 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D JOS54_02260 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D JOS54_06850 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D JOS54_00180 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D JOS54_01345 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D JOS54_03925 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D JOS54_03935 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D JOS54_03520 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D JOS54_02250 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
D JOS54_05065 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D JOS54_07000 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D JOS54_07005 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:bull00521]
D JOS54_04710 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D JOS54_00840 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D JOS54_03700 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D JOS54_04710 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
D JOS54_00945 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
C 00999 Biosynthesis of various plant secondary metabolites
D JOS54_05510 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
D JOS54_02385 alanine racemase K21898 orr; ornithine racemase [EC:5.1.1.12]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
C 00627 Aminobenzoate degradation
D JOS54_04890 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:bull00625]
D JOS54_04900 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
D JOS54_05065 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:bull00626]
D JOS54_04900 adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:bull03020]
D JOS54_00375 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D JOS54_00380 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D JOS54_07120 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D JOS54_01360 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:bull03010]
D JOS54_02225 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D JOS54_07215 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D JOS54_02935 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D JOS54_07160 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D JOS54_00625 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D JOS54_07335 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D JOS54_07175 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D JOS54_00765 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D JOS54_07250 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D JOS54_07125 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D JOS54_07340 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D JOS54_07130 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D JOS54_07180 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D JOS54_03040 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D JOS54_02115 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D JOS54_07200 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D JOS54_00635 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D JOS54_07225 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D JOS54_03020 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D JOS54_04010 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D JOS54_00330 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D JOS54_07230 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D JOS54_07245 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D JOS54_07240 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D JOS54_07185 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D JOS54_07170 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D JOS54_00345 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D JOS54_00800 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D JOS54_00340 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D JOS54_00325 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D JOS54_00760 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D JOS54_07195 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D JOS54_07155 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D JOS54_07210 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D JOS54_07115 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D JOS54_07165 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D JOS54_02165 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D JOS54_03205 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D JOS54_02965 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D JOS54_07220 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D JOS54_07235 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D JOS54_07190 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D JOS54_02975 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D JOS54_04260 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D JOS54_07205 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D JOS54_01380 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D JOS54_04670 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D JOS54_00295 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D JOS54_03920 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D JOS54_07835 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D JOS54_03200 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D JOS54_07135 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D JOS54_01220 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:bull00970]
D JOS54_06865 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D JOS54_01825 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D JOS54_04780 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D JOS54_06380 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D JOS54_01115 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D JOS54_05180 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D JOS54_01125 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D JOS54_00515 tRNA-His K14226 tRNA-His; tRNA His
D JOS54_06860 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D JOS54_01530 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D JOS54_04755 tRNA-Met K14230 tRNA-Met; tRNA Met
D JOS54_04765 tRNA-Ile K14230 tRNA-Met; tRNA Met
D JOS54_04770 tRNA-Met K14230 tRNA-Met; tRNA Met
D JOS54_04750 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D JOS54_04775 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D JOS54_04760 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D JOS54_05720 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D JOS54_01105 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D JOS54_01545 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D JOS54_01110 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D JOS54_01100 tRNA-Val K14237 tRNA-Val; tRNA Val
D JOS54_06285 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D JOS54_06280 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D JOS54_06290 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D JOS54_01550 hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D JOS54_03290 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D JOS54_04595 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D JOS54_00430 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D JOS54_03970 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D JOS54_03555 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D JOS54_00040 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D JOS54_00275 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D JOS54_00200 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D JOS54_03025 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D JOS54_03010 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D JOS54_03735 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D JOS54_05520 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D JOS54_05030 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D JOS54_01830 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D JOS54_03545 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D JOS54_04600 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D JOS54_04880 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D JOS54_04875 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D JOS54_03100 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D JOS54_03270 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:bull03060]
D JOS54_07150 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D JOS54_00300 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D JOS54_00875 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D JOS54_04635 secD; protein translocase subunit SecD K12257 secDF; SecD/SecF fusion protein
D JOS54_07845 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D JOS54_06835 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D JOS54_02110 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D JOS54_03400 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D JOS54_02170 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D JOS54_03680 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:bull04122]
D JOS54_02945 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D JOS54_03280 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D JOS54_02950 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
C 03050 Proteasome
C 03018 RNA degradation [PATH:bull03018]
D JOS54_00865 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D JOS54_03065 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D JOS54_03430 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D JOS54_00880 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D JOS54_02080 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D JOS54_02090 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D JOS54_02560 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D JOS54_02325 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D JOS54_02635 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D JOS54_04865 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:bull03030]
D JOS54_04945 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D JOS54_03845 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D JOS54_03560 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D JOS54_00055 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D JOS54_07750 DNA polymerase III subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D JOS54_03340 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D JOS54_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D JOS54_00805 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D JOS54_03965 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D JOS54_00535 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_00630 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_04140 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_02180 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D JOS54_03665 rnhC; ribonuclease HIII K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D JOS54_02300 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D JOS54_06295 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:bull03410]
D JOS54_02020 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D JOS54_00850 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D JOS54_05170 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D JOS54_02305 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D JOS54_02865 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D JOS54_06810 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D JOS54_02300 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D JOS54_04615 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D JOS54_06295 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:bull03420]
D JOS54_07815 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D JOS54_00220 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D JOS54_00620 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D JOS54_03650 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D JOS54_06300 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D JOS54_04205 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D JOS54_02300 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D JOS54_06295 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:bull03430]
D JOS54_00215 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D JOS54_03655 Smr/MutS family protein K07456 mutS2; DNA mismatch repair protein MutS2
D JOS54_07565 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D JOS54_07620 hypothetical protein K03573 mutH; DNA mismatch repair protein MutH
D JOS54_06300 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D JOS54_04205 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D JOS54_03530 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D JOS54_03525 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D JOS54_04615 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D JOS54_00535 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_00630 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_04140 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_03845 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D JOS54_03560 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D JOS54_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D JOS54_00055 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D JOS54_03340 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D JOS54_07750 DNA polymerase III subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D JOS54_04945 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D JOS54_06295 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D JOS54_07700 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D JOS54_04200 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:bull03440]
D JOS54_04615 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D JOS54_00535 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_00630 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_04140 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_00020 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D JOS54_03975 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D JOS54_00060 recR; recombination protein RecR K06187 recR; recombination protein RecR
D JOS54_02065 recA; recombinase RecA K03553 recA; recombination protein RecA
D JOS54_02300 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D JOS54_02985 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D JOS54_02990 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D JOS54_05630 putative DNA binding domain-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D JOS54_06690 winged helix-turn-helix transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D JOS54_03575 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D JOS54_03285 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D JOS54_03845 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D JOS54_03560 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D JOS54_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D JOS54_00055 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D JOS54_03340 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D JOS54_07750 DNA polymerase III subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D JOS54_04945 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D JOS54_04300 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:bull02010]
D JOS54_04805 ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D JOS54_04810 ABC transporter permease K11070 potC; spermidine/putrescine transport system permease protein
D JOS54_04815 ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein
D JOS54_04820 ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D JOS54_07345 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D JOS54_05265 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D JOS54_02425 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D JOS54_05125 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D JOS54_02435 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D JOS54_05115 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D JOS54_02440 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D JOS54_05110 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D JOS54_02430 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D JOS54_05120 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D JOS54_07770 PhnD/SsuA/transferrin family substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D JOS54_07780 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D JOS54_07785 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D JOS54_07775 phnC; phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D JOS54_07475 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein
D JOS54_07485 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein
D JOS54_07480 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D JOS54_06700 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D JOS54_06705 ABC transporter permease K02072 metI; D-methionine transport system permease protein
D JOS54_06710 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein
D JOS54_05565 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D JOS54_05560 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D JOS54_05555 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D JOS54_05550 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D JOS54_05545 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein
D JOS54_01675 zinc ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D JOS54_02295 zinc ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D JOS54_05390 zinc ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D JOS54_01665 metal ABC transporter permease K09816 znuB; zinc transport system permease protein
D JOS54_05380 metal ABC transporter permease K09816 znuB; zinc transport system permease protein
D JOS54_01670 ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D JOS54_05385 metal ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D JOS54_00645 zinc ABC transporter substrate-binding protein K11707 troA; manganese/zinc/iron transport system substrate-binding protein
D JOS54_00655 metal ABC transporter permease K11708 troC; manganese/zinc/iron transport system permease protein
D JOS54_00660 metal ABC transporter permease K11709 troD; manganese/zinc/iron transport system permease protein
D JOS54_00650 metal ABC transporter ATP-binding protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5]
D JOS54_03810 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D JOS54_01755 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D JOS54_00725 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D JOS54_00715 energy-coupling factor transporter ATPase K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D JOS54_00720 energy-coupling factor transporter ATPase K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D JOS54_07010 FtsX-like permease family protein K19084 braE; bacitracin transport system permease protein
D JOS54_07015 ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein
D JOS54_00610 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D JOS54_00605 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D JOS54_04580 hypothetical protein K16919 ytrC_D; acetoin utilization transport system permease protein
D JOS54_04585 ABC transporter ATP-binding protein K16921 ytrB; acetoin utilization transport system ATP-binding protein
D JOS54_01740 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D JOS54_02740 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D JOS54_03795 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D JOS54_01745 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D JOS54_02745 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D JOS54_03790 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D JOS54_06420 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D JOS54_01245 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D JOS54_06425 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D JOS54_01250 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS) [PATH:bull02060]
D JOS54_04695 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D JOS54_00835 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D JOS54_00210 hypothetical protein K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D JOS54_04795 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D JOS54_04785 PTS transporter subunit EIIC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D JOS54_05210 PTS transporter subunit EIIC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D JOS54_00505 PTS glucose transporter subunit IIA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D JOS54_06455 PTS lactose/cellobiose transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D JOS54_06515 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D JOS54_01235 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D JOS54_06510 PTS sugar transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component
D JOS54_01930 PTS sugar transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component
D JOS54_07305 PTS sugar transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D JOS54_07295 agaB; PTS N-acetylgalactosamine transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D JOS54_04455 PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D JOS54_07290 PTS sugar transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D JOS54_04450 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D JOS54_07285 PTS system mannose/fructose/sorbose family transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component
D JOS54_04445 PTS system mannose/fructose/sorbose family transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component
D JOS54_01150 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D JOS54_01280 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D JOS54_03775 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D JOS54_01155 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D JOS54_01285 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D JOS54_03765 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D JOS54_01160 PTS transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D JOS54_01290 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D JOS54_03770 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D JOS54_00740 PTS fructose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D JOS54_00750 PTS sugar transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D JOS54_06345 1-phosphofructokinase family hexose kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:bull03070]
D JOS54_04635 secD; protein translocase subunit SecD K12257 secDF; SecD/SecF fusion protein
D JOS54_00300 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D JOS54_00875 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D JOS54_07150 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D JOS54_07845 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D JOS54_06835 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D JOS54_03400 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D JOS54_02110 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D JOS54_06230 type IV secretory system conjugative DNA transfer family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D JOS54_04100 type IV secretory system conjugative DNA transfer family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:bull02020]
D JOS54_05735 HAMP domain-containing histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3]
D JOS54_05740 response regulator transcription factor K07770 cssR; two-component system, OmpR family, response regulator CssR
D JOS54_01870 trypsin-like peptidase domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107]
D JOS54_05900 hypothetical protein K02405 fliA; RNA polymerase sigma factor FliA
D JOS54_03710 response regulator transcription factor K07775 resD; two-component system, OmpR family, response regulator ResD
D JOS54_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D JOS54_07010 FtsX-like permease family protein K19084 braE; bacitracin transport system permease protein
D JOS54_07015 ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein
D JOS54_06315 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_07760 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_07830 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_01230 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_00675 HAMP domain-containing histidine kinase K18986 ihk; two-component system, OmpR family, sensor kinase Ihk [EC:2.7.13.3]
D JOS54_05200 histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D JOS54_05195 response regulator K07720 yesN; two-component system, response regulator YesN
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:bull02024]
D JOS54_05765 hypothetical protein K20276 bapA; large repetitive protein
D JOS54_05565 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D JOS54_05560 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D JOS54_05555 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D JOS54_05550 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D JOS54_05545 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein
D JOS54_07845 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D JOS54_04635 secD; protein translocase subunit SecD K12257 secDF; SecD/SecF fusion protein
D JOS54_00300 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D JOS54_00875 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D JOS54_07150 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D JOS54_06835 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D JOS54_03400 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D JOS54_02110 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly [PATH:bull02040]
D JOS54_07475 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein
D JOS54_03960 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D JOS54_05900 hypothetical protein K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D JOS54_00865 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:bull01501]
D JOS54_05565 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D JOS54_05560 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D JOS54_05555 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D JOS54_05550 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D JOS54_05545 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein
D JOS54_02040 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D JOS54_03850 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
C 01502 Vancomycin resistance [PATH:bull01502]
D JOS54_05015 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D JOS54_06395 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D JOS54_05725 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D JOS54_04645 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D JOS54_03600 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D JOS54_06315 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_07760 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_07830 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_01230 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:bull01503]
D JOS54_06795 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D JOS54_01870 trypsin-like peptidase domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:bull01000]
C 01001 Protein kinases [BR:bull01001]
D JOS54_04280 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D JOS54_05735 HAMP domain-containing histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3]
D JOS54_00675 HAMP domain-containing histidine kinase K18986 ihk; two-component system, OmpR family, sensor kinase Ihk [EC:2.7.13.3]
D JOS54_05200 histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:bull01009]
D JOS54_02325 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D JOS54_02355 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D JOS54_04285 Stp1/IreP family PP2C-type Ser/Thr phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:bull01002]
D JOS54_03680 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D JOS54_06975 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D JOS54_04715 C1 family peptidase K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D JOS54_06695 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D JOS54_01310 DUF5011 domain-containing protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D JOS54_05425 DJ-1/PfpI family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D JOS54_01400 srtB; class B sortase K08600 srtB; sortase B [EC:3.4.22.71]
D JOS54_03225 C69 family dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-]
D JOS54_05045 C69 family dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-]
D JOS54_06580 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein
D JOS54_02890 pepF; oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D JOS54_06315 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_07760 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_07830 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_01230 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_07730 insulinase family protein K06972 PITRM1; presequence protease [EC:3.4.24.-]
D JOS54_06805 Sapep family Mn(2+)-dependent dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D JOS54_00640 Sapep family Mn(2+)-dependent dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D JOS54_05215 Sapep family Mn(2+)-dependent dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D JOS54_06350 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D JOS54_05000 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D JOS54_06815 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D JOS54_06965 aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-]
D JOS54_02460 carboxypeptidase M32 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D JOS54_00930 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D JOS54_01450 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D JOS54_02265 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D JOS54_02790 PrsW family intramembrane metalloprotease K24131 prsW; protease PrsW [EC:3.4.-.-]
D JOS54_01870 trypsin-like peptidase domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107]
D JOS54_06780 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D JOS54_03485 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D JOS54_03610 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D JOS54_04720 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D JOS54_05695 helix-turn-helix domain-containing protein K01356 lexA; repressor LexA [EC:3.4.21.88]
D JOS54_05990 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88]
D JOS54_02170 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D JOS54_02280 proline iminopeptidase-family hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D JOS54_00615 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D JOS54_03350 U32 family peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D JOS54_04915 U32 family peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D JOS54_04920 U32 family peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:bull01003]
D JOS54_04500 RecX family transcriptional regulator K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D JOS54_04510 glycosyltransferase K13677 dgs; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-glucosyltransferase [EC:2.4.1.208]
D JOS54_02525 glgA; glycogen synthase GlgA K00703 glgA; starch synthase [EC:2.4.1.21]
D JOS54_02040 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D JOS54_03850 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:bull01005]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:bull01011]
D JOS54_01375 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D JOS54_03595 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D JOS54_02770 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D JOS54_02070 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D JOS54_04230 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D JOS54_05015 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D JOS54_03215 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein K05363 murM; serine/alanine adding enzyme [EC:2.3.2.10]
D JOS54_06395 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D JOS54_04645 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D JOS54_03600 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D JOS54_06720 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D JOS54_01685 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D JOS54_01815 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D JOS54_02040 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D JOS54_03850 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D JOS54_04650 penicillin-binding protein K08724 pbpB; penicillin-binding protein 2B
D JOS54_01860 hypothetical protein K05364 pbpA; penicillin-binding protein A
D JOS54_06780 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D JOS54_03485 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D JOS54_06315 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_07760 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_07830 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_01230 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_01310 DUF5011 domain-containing protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D JOS54_01400 srtB; class B sortase K08600 srtB; sortase B [EC:3.4.22.71]
D JOS54_03310 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D JOS54_06795 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:bull01004]
D JOS54_00945 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D JOS54_01980 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:bull01006]
D JOS54_03520 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D JOS54_02250 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D JOS54_07560 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
C 01007 Amino acid related enzymes [BR:bull01007]
D JOS54_03100 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D JOS54_03270 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D JOS54_00275 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D JOS54_01830 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D JOS54_00200 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D JOS54_05520 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D JOS54_03010 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D JOS54_03735 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D JOS54_05030 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D JOS54_04595 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D JOS54_00430 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D JOS54_04600 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D JOS54_03970 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D JOS54_00040 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D JOS54_03545 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D JOS54_03555 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D JOS54_01550 hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D JOS54_03290 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D JOS54_04880 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D JOS54_04875 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:bull00194]
D JOS54_00145 atpC; ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D JOS54_00140 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D JOS54_00135 atpG; ATP synthase F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D JOS54_00130 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D JOS54_00125 atpH; ATP synthase F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D JOS54_00120 ATP synthase F0 subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D JOS54_00115 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D JOS54_00110 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:bull03000]
D JOS54_06160 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_07615 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_05035 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_07355 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D JOS54_03095 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D JOS54_04435 LacI family DNA-binding transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D JOS54_04590 GntR family transcriptional regulator K07979 ytrA; GntR family transcriptional regulator
D JOS54_05655 phage antirepressor KilAC domain-containing protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D JOS54_07440 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D JOS54_07725 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D JOS54_01680 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D JOS54_04950 helix-turn-helix transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D JOS54_07455 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D JOS54_00665 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D JOS54_01130 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D JOS54_00425 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D JOS54_06145 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D JOS54_06565 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D JOS54_06610 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D JOS54_07625 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D JOS54_07705 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D JOS54_02685 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D JOS54_03365 helix-turn-helix domain-containing protein K07727 K07727; putative transcriptional regulator
D JOS54_04430 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D JOS54_02490 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D JOS54_06475 PRD domain-containing protein K03491 licR; probable licABCH operon transcriptional regulator
D JOS54_01505 metal-sensing transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D JOS54_00090 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D JOS54_00100 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D JOS54_04190 ParB N-terminal domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D JOS54_02625 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D JOS54_01540 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D JOS54_04665 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:bull03021]
D JOS54_07120 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D JOS54_00375 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D JOS54_00380 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D JOS54_01360 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
D JOS54_03960 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D JOS54_00290 sigma-70 family RNA polymerase sigma factor K27000 sigH; RNA polymerase sigma-H factor
D JOS54_05900 hypothetical protein K02405 fliA; RNA polymerase sigma factor FliA
D JOS54_03115 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D JOS54_03535 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D JOS54_00305 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D JOS54_03325 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
C 03019 Messenger RNA biogenesis [BR:bull03019]
D JOS54_03570 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D JOS54_02090 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D JOS54_02560 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D JOS54_02080 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D JOS54_00880 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D JOS54_04495 HD domain-containing protein K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D JOS54_03430 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D JOS54_03930 DEAD/DEAH box helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
D JOS54_00865 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D JOS54_03065 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D JOS54_02325 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D JOS54_02635 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D JOS54_04865 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D JOS54_00235 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:bull03011]
D JOS54_02225 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D JOS54_07215 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D JOS54_02935 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D JOS54_07160 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D JOS54_00625 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D JOS54_07335 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D JOS54_07175 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D JOS54_00765 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D JOS54_07250 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D JOS54_07125 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D JOS54_07340 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D JOS54_07130 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D JOS54_07180 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D JOS54_03040 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D JOS54_02115 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D JOS54_07200 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D JOS54_00635 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D JOS54_07225 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D JOS54_03020 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D JOS54_04010 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D JOS54_00330 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D JOS54_07230 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D JOS54_07245 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D JOS54_07240 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D JOS54_07185 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D JOS54_07170 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D JOS54_00800 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D JOS54_00340 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D JOS54_00325 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D JOS54_00345 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D JOS54_00760 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D JOS54_07195 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D JOS54_07155 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D JOS54_07210 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D JOS54_07115 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D JOS54_07165 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D JOS54_02165 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D JOS54_03205 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D JOS54_02965 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D JOS54_07220 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D JOS54_07235 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D JOS54_07190 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D JOS54_02975 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D JOS54_04260 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D JOS54_07205 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D JOS54_01380 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D JOS54_04670 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D JOS54_00295 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D JOS54_03920 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D JOS54_07835 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D JOS54_03200 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D JOS54_07135 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D JOS54_01220 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:bull03009]
D JOS54_03570 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D JOS54_02610 SPASM domain-containing protein K23309 ZNHIT3; zinc finger HIT domain-containing protein 3
D JOS54_03980 era; GTPase Era K03595 era; GTPase
D JOS54_02980 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D JOS54_03115 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D JOS54_03535 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D JOS54_00305 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D JOS54_03940 rRNA pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D JOS54_00175 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D JOS54_04295 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D JOS54_00350 class I SAM-dependent methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D JOS54_02575 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D JOS54_04235 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D JOS54_00085 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D JOS54_04660 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D JOS54_07740 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D JOS54_02365 methyltransferase domain-containing protein K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D JOS54_00285 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D JOS54_04910 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D JOS54_00825 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D JOS54_06305 class I SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D JOS54_04290 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D JOS54_06270 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D JOS54_02420 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D JOS54_02910 rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D JOS54_06310 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D JOS54_03675 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D JOS54_00415 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D JOS54_02125 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D JOS54_03300 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D JOS54_00280 Mini-ribonuclease 3 K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
D JOS54_03930 DEAD/DEAH box helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
D JOS54_04275 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D JOS54_03860 der; ribosome biogenesis GTPase Der K03977 engA; GTPase
D JOS54_02175 ylqF; ribosome biogenesis GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A
D JOS54_01905 hflX; GTPase HflX K03665 hflX; GTPase
D JOS54_01995 yqeH; ribosome biogenesis GTPase YqeH K06948 yqeH; 30S ribosome assembly GTPase
D JOS54_01415 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D JOS54_04605 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D JOS54_03130 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D JOS54_03110 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D JOS54_00015 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein
D JOS54_02010 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D JOS54_03990 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D JOS54_02000 YhbY family RNA-binding protein K07574 yhbY; RNA-binding protein
D JOS54_04705 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor
D JOS54_01330 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D JOS54_04675 DUF177 domain-containing protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:bull03016]
D JOS54_04990 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D JOS54_01340 CCA tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D JOS54_03545 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D JOS54_05520 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D JOS54_03735 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D JOS54_00200 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D JOS54_01830 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D JOS54_05030 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D JOS54_04595 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D JOS54_01550 hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D JOS54_03290 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D JOS54_00430 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D JOS54_03970 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D JOS54_03555 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D JOS54_00040 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D JOS54_00275 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D JOS54_03010 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D JOS54_04600 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D JOS54_04880 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D JOS54_04875 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D JOS54_03100 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D JOS54_03270 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D JOS54_01315 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D JOS54_04345 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D JOS54_03070 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D JOS54_00730 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D JOS54_03170 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D JOS54_02945 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D JOS54_01415 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D JOS54_07560 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D JOS54_00155 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D JOS54_00075 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D JOS54_07840 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D JOS54_00585 aminoacyl-tRNA deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D JOS54_00050 nucleoside deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D JOS54_02085 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D JOS54_02195 trmFO; methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D JOS54_02130 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D JOS54_03955 SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D JOS54_03255 tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D JOS54_04905 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D JOS54_03280 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D JOS54_05150 tRNA 2-thiocytidine(32) synthetase TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D JOS54_04965 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D JOS54_04970 epoxyqueuosine reductase QueH K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D JOS54_04960 tgt; tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D JOS54_02950 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D JOS54_01440 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D JOS54_00410 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D JOS54_00420 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D JOS54_00405 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D JOS54_00580 tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D JOS54_04680 nucleotidyltransferase family protein K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
D JOS54_00880 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D JOS54_03065 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:bull03012]
D JOS54_03125 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D JOS54_03195 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D JOS54_00435 abc-f; ABC-F type ribosomal protection protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D JOS54_02230 elongation factor Ts K02357 tsf; elongation factor Ts
D JOS54_07325 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D JOS54_07330 fusA; elongation factor G K02355 fusA; elongation factor G
D JOS54_00530 elongation factor G K02355 fusA; elongation factor G
D JOS54_01385 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D JOS54_02245 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D JOS54_01390 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D JOS54_07820 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D JOS54_07140 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D JOS54_00940 efp; elongation factor P K02356 efp; elongation factor P
D JOS54_03880 efp; elongation factor P K02356 efp; elongation factor P
D JOS54_06830 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:bull03110]
D JOS54_02645 AAA family ATPase K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D JOS54_02355 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D JOS54_02635 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D JOS54_04865 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D JOS54_02640 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D JOS54_01470 hslO; Hsp33 family molecular chaperone HslO K04083 hslO; molecular chaperone Hsp33
D JOS54_02630 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D JOS54_00035 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D JOS54_04870 co-chaperone GroES K04078 groES; chaperonin GroES
D JOS54_01870 trypsin-like peptidase domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107]
D JOS54_00930 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D JOS54_01450 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D JOS54_00110 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D JOS54_02395 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D JOS54_06725 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D JOS54_04335 peptidylprolyl isomerase K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D JOS54_04340 hypothetical protein K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D JOS54_04830 trxA; thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:bull04131]
D JOS54_02765 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D JOS54_00260 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D JOS54_00695 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D JOS54_02330 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D JOS54_02355 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:bull03051]
D JOS54_02355 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:bull03032]
D JOS54_06160 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_07615 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_05035 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_06735 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D JOS54_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D JOS54_00805 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D JOS54_06245 ATP-binding protein K02315 dnaC; DNA replication protein DnaC
D JOS54_03965 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D JOS54_02315 hypothetical protein K03346 dnaB; replication initiation and membrane attachment protein
D JOS54_02320 ATP-binding protein K11144 dnaI; primosomal protein DnaI
D JOS54_00535 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_00630 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_04140 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_03845 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D JOS54_03560 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D JOS54_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D JOS54_03340 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D JOS54_07750 DNA polymerase III subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D JOS54_04945 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D JOS54_00055 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D JOS54_02180 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D JOS54_03665 rnhC; ribonuclease HIII K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D JOS54_02300 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D JOS54_06295 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D JOS54_07700 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D JOS54_04200 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D JOS54_00030 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D JOS54_00025 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D JOS54_01990 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D JOS54_01985 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D JOS54_02190 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D JOS54_06165 DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D JOS54_04020 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:bull03036]
D JOS54_06160 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_07615 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_05035 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_03570 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D JOS54_02765 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D JOS54_06735 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D JOS54_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D JOS54_03395 AAA family ATPase K03529 smc; chromosome segregation protein
D JOS54_03730 segregation/condensation protein A K05896 scpA; segregation and condensation protein A
D JOS54_03725 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B
D JOS54_04250 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D JOS54_07805 septum formation initiator family protein K13052 divIC; cell division protein DivIC
D JOS54_00605 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D JOS54_02095 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D JOS54_04655 hypothetical protein K03586 ftsL; cell division protein FtsL
D JOS54_03590 FtsQ-type POTRA domain-containing protein K03589 ftsQ; cell division protein FtsQ
D JOS54_02570 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; cell division protein FtsW
D JOS54_00610 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D JOS54_04245 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D JOS54_06795 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D JOS54_02940 selenide, water dikinase K06286 ezrA; septation ring formation regulator
D JOS54_05535 cell division protein SepF K09772 sepF; cell division inhibitor SepF
D JOS54_00095 ParA family protein K03496 parA; chromosome partitioning protein
D JOS54_00970 ParA family protein K03496 parA; chromosome partitioning protein
D JOS54_04030 AAA family ATPase K03496 parA; chromosome partitioning protein
D JOS54_00090 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D JOS54_00100 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D JOS54_04190 ParB N-terminal domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D JOS54_01990 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D JOS54_01985 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D JOS54_00075 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D JOS54_00085 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D JOS54_02195 trmFO; methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D JOS54_03500 tyrosine-type recombinase/integrase K04763 xerD; integrase/recombinase XerD
D JOS54_00450 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D JOS54_04410 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D JOS54_03605 YihA family ribosome biogenesis GTP-binding protein K03978 engB; GTP-binding protein
D JOS54_00245 whiA; DNA-binding protein WhiA K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:bull03400]
D JOS54_06870 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D JOS54_00850 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D JOS54_05170 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D JOS54_02020 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D JOS54_02655 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D JOS54_03315 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D JOS54_05005 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D JOS54_02865 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D JOS54_02305 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D JOS54_06810 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D JOS54_04615 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D JOS54_06295 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D JOS54_02300 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D JOS54_00220 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D JOS54_00620 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D JOS54_03650 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D JOS54_06300 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D JOS54_04205 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D JOS54_00375 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D JOS54_00380 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D JOS54_07120 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D JOS54_01360 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
D JOS54_07815 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D JOS54_00215 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D JOS54_03655 Smr/MutS family protein K07456 mutS2; DNA mismatch repair protein MutS2
D JOS54_07565 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D JOS54_07620 hypothetical protein K03573 mutH; DNA mismatch repair protein MutH
D JOS54_03530 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D JOS54_03525 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D JOS54_03845 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D JOS54_03560 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D JOS54_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D JOS54_03340 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D JOS54_07750 DNA polymerase III subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D JOS54_04945 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D JOS54_00055 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D JOS54_00535 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_00630 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_04140 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_07700 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D JOS54_04200 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D JOS54_03285 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D JOS54_02065 recA; recombinase RecA K03553 recA; recombination protein RecA
D JOS54_02985 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D JOS54_02990 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D JOS54_04300 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D JOS54_06930 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
D JOS54_06935 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D JOS54_00020 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D JOS54_05630 putative DNA binding domain-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D JOS54_06690 winged helix-turn-helix transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D JOS54_03575 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D JOS54_03975 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D JOS54_00060 recR; recombination protein RecR K06187 recR; recombination protein RecR
D JOS54_03510 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D JOS54_02045 recU; Holliday junction resolvase RecU K03700 recU; recombination protein U
D JOS54_07670 UvrD-helicase domain-containing protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D JOS54_07665 PD-(D/E)XK nuclease family protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D JOS54_03565 DUF853 family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D JOS54_00030 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D JOS54_00025 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D JOS54_02190 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D JOS54_06735 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D JOS54_03505 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D JOS54_05695 helix-turn-helix domain-containing protein K01356 lexA; repressor LexA [EC:3.4.21.88]
D JOS54_05990 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88]
D JOS54_03415 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:bull03029]
D JOS54_03125 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D JOS54_03195 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D JOS54_02230 elongation factor Ts K02357 tsf; elongation factor Ts
D JOS54_07325 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D JOS54_07330 fusA; elongation factor G K02355 fusA; elongation factor G
D JOS54_00530 elongation factor G K02355 fusA; elongation factor G
D JOS54_03980 era; GTPase Era K03595 era; GTPase
D JOS54_03100 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D JOS54_03735 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D JOS54_04595 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D JOS54_03970 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D JOS54_01830 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D JOS54_06285 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D JOS54_06280 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D JOS54_06290 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D JOS54_00535 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_00630 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_04140 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D JOS54_02635 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D JOS54_02630 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D JOS54_04865 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D JOS54_04870 co-chaperone GroES K04078 groES; chaperonin GroES
D JOS54_02640 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D JOS54_02945 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D JOS54_07845 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D JOS54_02355 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:bull02000]
D JOS54_01740 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D JOS54_02740 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D JOS54_03795 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D JOS54_01745 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D JOS54_02745 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D JOS54_03790 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D JOS54_06420 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D JOS54_01245 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D JOS54_06425 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D JOS54_01250 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D JOS54_06885 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D JOS54_04805 ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D JOS54_04810 ABC transporter permease K11070 potC; spermidine/putrescine transport system permease protein
D JOS54_04815 ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein
D JOS54_04820 ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D JOS54_06775 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D JOS54_06770 ABC transporter permease subunit K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D JOS54_06765 ATP-binding cassette domain-containing protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D JOS54_07345 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D JOS54_05265 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D JOS54_07370 ABC transporter substrate-binding protein K25086 musE; maltose transport system substrate-binding protein
D JOS54_07365 sugar ABC transporter permease K25087 musF; maltose transport system permease protein
D JOS54_07360 carbohydrate ABC transporter permease K25088 musG; maltose transport system permease protein
D JOS54_02425 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D JOS54_05125 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D JOS54_02435 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D JOS54_05115 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D JOS54_02440 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D JOS54_05110 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D JOS54_02430 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D JOS54_05120 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D JOS54_05280 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D JOS54_05275 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D JOS54_05270 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D JOS54_07770 PhnD/SsuA/transferrin family substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D JOS54_07780 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D JOS54_07785 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D JOS54_07775 phnC; phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D JOS54_07475 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein
D JOS54_07485 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein
D JOS54_07480 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D JOS54_06700 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D JOS54_06705 ABC transporter permease K02072 metI; D-methionine transport system permease protein
D JOS54_06710 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein
D JOS54_05565 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D JOS54_05560 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D JOS54_05555 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D JOS54_05550 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D JOS54_05545 ATP-binding cassette domain-containing protein K10823 oppF; oligopeptide transport system ATP-binding protein
D JOS54_01675 zinc ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D JOS54_02295 zinc ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D JOS54_05390 zinc ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D JOS54_01665 metal ABC transporter permease K09816 znuB; zinc transport system permease protein
D JOS54_05380 metal ABC transporter permease K09816 znuB; zinc transport system permease protein
D JOS54_01670 ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D JOS54_05385 metal ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D JOS54_00645 zinc ABC transporter substrate-binding protein K11707 troA; manganese/zinc/iron transport system substrate-binding protein
D JOS54_00655 metal ABC transporter permease K11708 troC; manganese/zinc/iron transport system permease protein
D JOS54_00660 metal ABC transporter permease K11709 troD; manganese/zinc/iron transport system permease protein
D JOS54_00650 metal ABC transporter ATP-binding protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5]
D JOS54_01760 MptD family putative ECF transporter S component K16926 htsT; energy-coupling factor transport system substrate-specific component
D JOS54_03800 MptD family putative ECF transporter S component K16926 htsT; energy-coupling factor transport system substrate-specific component
D JOS54_03810 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D JOS54_01755 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D JOS54_00725 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D JOS54_00715 energy-coupling factor transporter ATPase K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D JOS54_00720 energy-coupling factor transporter ATPase K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D JOS54_01750 ATP-binding cassette domain-containing protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D JOS54_03805 ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D JOS54_07010 FtsX-like permease family protein K19084 braE; bacitracin transport system permease protein
D JOS54_07015 ABC transporter ATP-binding protein K19083 braD; bacitracin transport system ATP-binding protein
D JOS54_04580 hypothetical protein K16919 ytrC_D; acetoin utilization transport system permease protein
D JOS54_04585 ABC transporter ATP-binding protein K16921 ytrB; acetoin utilization transport system ATP-binding protein
D JOS54_00610 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D JOS54_00605 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D JOS54_07655 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D JOS54_07660 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D JOS54_02590 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D JOS54_02595 ABC-2 family transporter protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D JOS54_03690 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D JOS54_07650 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D JOS54_00370 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D JOS54_02600 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D JOS54_02720 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D JOS54_03420 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D JOS54_03695 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D JOS54_00680 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D JOS54_02920 ATP-binding cassette domain-containing protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D JOS54_03050 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D JOS54_00685 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D JOS54_03045 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D JOS54_04330 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D JOS54_02880 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D JOS54_04255 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D JOS54_05485 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D JOS54_06405 MFS transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D JOS54_04695 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D JOS54_00835 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D JOS54_04795 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D JOS54_04785 PTS transporter subunit EIIC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D JOS54_00210 hypothetical protein K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D JOS54_05210 PTS transporter subunit EIIC K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D JOS54_00505 PTS glucose transporter subunit IIA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D JOS54_00750 PTS sugar transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D JOS54_00740 PTS fructose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D JOS54_00745 PTS fructose transporter subunit IIBC K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-]
D JOS54_06455 PTS lactose/cellobiose transporter subunit IIA K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D JOS54_06515 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D JOS54_01235 PTS sugar transporter subunit IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D JOS54_06510 PTS sugar transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component
D JOS54_01930 PTS sugar transporter subunit IIC K02761 celB; cellobiose PTS system EIIC component
D JOS54_07305 PTS sugar transporter subunit IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D JOS54_07295 agaB; PTS N-acetylgalactosamine transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D JOS54_04455 PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D JOS54_07290 PTS sugar transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D JOS54_04450 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D JOS54_07285 PTS system mannose/fructose/sorbose family transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component
D JOS54_04445 PTS system mannose/fructose/sorbose family transporter subunit IID K02747 agaE; N-acetylgalactosamine PTS system EIID component
D JOS54_01150 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D JOS54_01280 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D JOS54_03775 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D JOS54_01155 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D JOS54_01285 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D JOS54_03765 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D JOS54_01160 PTS transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D JOS54_01290 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D JOS54_03770 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D JOS54_03355 mscL; large conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D JOS54_06480 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D JOS54_05305 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D JOS54_04240 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D JOS54_02380 amino acid permease K03758 arcD; arginine:ornithine antiporter / lysine permease
D JOS54_00560 cation:proton antiporter K26730 napA; Na+:H+ antiporter
D JOS54_07540 Trk family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein
D JOS54_07545 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D JOS54_02680 uracil permease K02824 uraA; uracil permease
D JOS54_00690 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D JOS54_00490 chromate transporter K07240 chrA; chromate transporter
D JOS54_00495 chromate transporter K07240 chrA; chromate transporter
D JOS54_05155 Na/Pi cotransporter family protein K03324 yjbB; phosphate:Na+ symporter
D JOS54_07080 C4-dicarboxylate ABC transporter K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D JOS54_04955 hypothetical protein K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D JOS54_03875 ECF transporter S component K23675 fmnP; riboflavin transporter
D JOS54_07505 energy-coupled thiamine transporter ThiT K16789 thiT; thiamine transporter
D JOS54_02570 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; cell division protein FtsW
D JOS54_00935 nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter
D JOS54_02545 ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D JOS54_02550 ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D JOS54_02555 ferrous iron transporter B K04759 feoB; ferrous iron transport protein B
C 02044 Secretion system [BR:bull02044]
D JOS54_06975 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D JOS54_03330 helix-hairpin-helix domain-containing protein K02237 comEA; competence protein ComEA
D JOS54_03670 dCMP deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D JOS54_06845 DEAD/DEAH box helicase family protein K02240 comFA; competence protein ComFA
D JOS54_06840 ComF family protein K02242 comFC; competence protein ComFC
D JOS54_03910 tadA; Flp pilus assembly complex ATPase component TadA K02243 comGA; competence protein ComGA
D JOS54_03905 hypothetical protein K02244 comGB; competence protein ComGB
D JOS54_03900 prepilin-type N-terminal cleavage/methylation domain-containing protein K02245 comGC; competence protein ComGC
D JOS54_06230 type IV secretory system conjugative DNA transfer family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D JOS54_04100 type IV secretory system conjugative DNA transfer family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D JOS54_06835 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D JOS54_04635 secD; protein translocase subunit SecD K12257 secDF; SecD/SecF fusion protein
D JOS54_00300 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D JOS54_00875 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D JOS54_07150 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D JOS54_02110 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D JOS54_03400 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D JOS54_07845 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:bull02042]
D JOS54_04240 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D JOS54_02140 hemolysin III family protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:bull02022]
D JOS54_05735 HAMP domain-containing histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3]
D JOS54_05740 response regulator transcription factor K07770 cssR; two-component system, OmpR family, response regulator CssR
D JOS54_03710 response regulator transcription factor K07775 resD; two-component system, OmpR family, response regulator ResD
D JOS54_00675 HAMP domain-containing histidine kinase K18986 ihk; two-component system, OmpR family, sensor kinase Ihk [EC:2.7.13.3]
D JOS54_05200 histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D JOS54_05195 response regulator K07720 yesN; two-component system, response regulator YesN
C 02035 Bacterial motility proteins [BR:bull02035]
D JOS54_05900 hypothetical protein K02405 fliA; RNA polymerase sigma factor FliA
D JOS54_07475 transporter substrate-binding domain-containing protein K02424 tcyA; L-cystine transport system substrate-binding protein
D JOS54_06975 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:bull04812]
D JOS54_04245 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D JOS54_04250 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D JOS54_00095 ParA family protein K03496 parA; chromosome partitioning protein
D JOS54_00970 ParA family protein K03496 parA; chromosome partitioning protein
D JOS54_04030 AAA family ATPase K03496 parA; chromosome partitioning protein
D JOS54_00090 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D JOS54_00100 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D JOS54_04190 ParB N-terminal domain-containing protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:bull04147]
D JOS54_02355 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D JOS54_02765 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D JOS54_00865 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D JOS54_00260 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D JOS54_00855 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D JOS54_02330 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D JOS54_04865 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D JOS54_02635 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D JOS54_05490 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D JOS54_03540 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D JOS54_07325 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D JOS54_04345 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D JOS54_05145 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D JOS54_07145 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D JOS54_04610 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D JOS54_02375 N(G),N(G)-dimethylarginine dimethylaminohydrolase K01482 DDAH; dimethylargininase [EC:3.5.3.18]
D JOS54_02390 N(G),N(G)-dimethylarginine dimethylaminohydrolase K01482 DDAH; dimethylargininase [EC:3.5.3.18]
D JOS54_02505 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D JOS54_00860 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D JOS54_00695 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:bull02048]
D JOS54_06140 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D JOS54_06525 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D JOS54_06110 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D JOS54_06130 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D JOS54_06530 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D JOS54_06535 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D JOS54_06135 SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D JOS54_06555 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D JOS54_06605 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D JOS54_07700 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D JOS54_04200 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D JOS54_02465 Dam family site-specific DNA-(adenine-N6)-methyltransferase K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D JOS54_05910 site-specific DNA-methyltransferase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D JOS54_06160 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_07615 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_05035 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D JOS54_05635 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K19156 prlF; antitoxin PrlF
D JOS54_05430 type II toxin-antitoxin system YafQ family toxin K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D JOS54_01300 type II toxin-antitoxin system RelB/DinJ family antitoxin K07473 dinJ; DNA-damage-inducible protein J
D JOS54_04385 type II toxin-antitoxin system RelB/DinJ family antitoxin K07473 dinJ; DNA-damage-inducible protein J
D JOS54_04390 type II toxin-antitoxin system RelB/DinJ family antitoxin K07473 dinJ; DNA-damage-inducible protein J
D JOS54_07520 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4
D JOS54_07530 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4
D JOS54_04380 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4
D JOS54_04395 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4
D JOS54_05610 type II toxin-antitoxin system Phd/YefM family antitoxin K19165 phd; antitoxin Phd
D JOS54_04245 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D JOS54_01990 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D JOS54_01985 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D JOS54_05590 type III toxin-antitoxin system ToxN/AbiQ family toxin K19167 abiQ; protein AbiQ
D JOS54_02945 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:bull01504]
D JOS54_01200 AAC(3) family N-acetyltransferase K00662 aacC; aminoglycoside 3-N-acetyltransferase [EC:2.3.1.81]
D JOS54_03435 NYN domain-containing protein K18220 tetM; ribosomal protection tetracycline resistance protein
D JOS54_06315 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_07760 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_07830 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D JOS54_01230 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:bull03100]
D JOS54_06865 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D JOS54_01825 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D JOS54_04780 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D JOS54_06380 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D JOS54_01115 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D JOS54_05180 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D JOS54_01125 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D JOS54_00515 tRNA-His K14226 tRNA-His; tRNA His
D JOS54_06860 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D JOS54_01530 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D JOS54_04755 tRNA-Met K14230 tRNA-Met; tRNA Met
D JOS54_04765 tRNA-Ile K14230 tRNA-Met; tRNA Met
D JOS54_04770 tRNA-Met K14230 tRNA-Met; tRNA Met
D JOS54_04750 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D JOS54_04775 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D JOS54_04760 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D JOS54_05720 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D JOS54_01105 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D JOS54_01545 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D JOS54_01110 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D JOS54_01100 tRNA-Val K14237 tRNA-Val; tRNA Val
D JOS54_01220 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D JOS54_04475 gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D JOS54_06895 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D JOS54_01690 bcp; thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D JOS54_06760 iron hydrogenase small subunit K18332 hndD; NADP-reducing hydrogenase subunit HndD [EC:1.12.1.3]
D JOS54_03060 desulfoferrodoxin K05919 dfx; superoxide reductase [EC:1.15.1.2]
D JOS54_00830 ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D JOS54_01700 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D JOS54_07465 pflA; pyruvate formate lyase-activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D JOS54_01490 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D JOS54_00895 GNAT family N-acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D JOS54_00910 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D JOS54_05475 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D JOS54_03580 DAK2 domain-containing protein K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D JOS54_05755 TIGR00159 family protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D JOS54_00225 hprK; HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D JOS54_06375 carboxylesterase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D JOS54_07790 tyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D JOS54_00795 DHH family phosphoesterase K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59]
D JOS54_00160 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D JOS54_00170 rnmV; ribonuclease M5 K05985 rnmV; ribonuclease M5 [EC:3.1.26.8]
D JOS54_04460 glycoside hydrolase family 88 protein K18581 ugl; unsaturated chondroitin disaccharide hydrolase [EC:3.2.1.180]
D JOS54_05790 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D JOS54_02565 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D JOS54_03260 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D JOS54_07575 polysaccharide lyase 8 family protein K01727 hysA; hyaluronate lyase [EC:4.2.2.1]
D JOS54_05465 RnfABCDGE type electron transport complex subunit D K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D JOS54_05470 RnfABCDGE type electron transport complex subunit C K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D JOS54_05440 electron transporter RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D JOS54_01510 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D JOS54_01255 cadA; cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D JOS54_04740 HAD-IC family P-type ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D JOS54_05460 FMN-binding protein K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D JOS54_05455 rsxE; electron transport complex subunit RsxE K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D JOS54_05450 RnfABCDGE type electron transport complex subunit A K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D JOS54_04315 SUF system NifU family Fe-S cluster assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D JOS54_01705 flavodoxin K03839 fldA; flavodoxin I
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
D JOS54_02860 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI K03647 nrdI; protein involved in ribonucleotide reduction
D JOS54_06745 DNA/RNA non-specific endonuclease K15051 endA; DNA-entry nuclease
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
D JOS54_04505 flippase-like domain-containing protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D JOS54_00195 cold-shock protein K03704 cspA; cold shock protein
D JOS54_03275 spx; transcriptional regulator Spx K16509 spxA; regulatory protein spx
D JOS54_06900 RNA-binding transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
D JOS54_05495 S1 RNA-binding domain-containing protein K07570 GSP13; general stress protein 13
C 99975 Protein processing
D JOS54_03615 trigger factor K03545 tig; trigger factor
D JOS54_00885 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
C 99976 Replication and repair
D JOS54_02285 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC
D JOS54_02185 dprA; DNA-protecting protein DprA K04096 smf; DNA processing protein
D JOS54_02015 DnaD domain protein K02086 dnaD; DNA replication protein
D JOS54_04725 replication-associated recombination protein A K07478 ycaJ; putative ATPase
D JOS54_01095 IS30 family transposase K07482 K07482; transposase, IS30 family
D JOS54_04015 IS30 family transposase K07482 K07482; transposase, IS30 family
D JOS54_06660 helix-turn-helix domain-containing protein K07483 K07483; transposase
D JOS54_01265 transposase K07483 K07483; transposase
D JOS54_00575 transposase K07485 K07485; transposase
D JOS54_06665 IS3 family transposase K07497 K07497; putative transposase
D JOS54_06925 IS3 family transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
C 99978 Cell growth
D JOS54_07850 KH domain-containing protein K06346 jag; spoIIIJ-associated protein
D JOS54_06040 recombinase family protein K06400 spoIVCA; site-specific DNA recombinase
D JOS54_06045 recombinase family protein K06400 spoIVCA; site-specific DNA recombinase
D JOS54_06050 recombinase family protein K06400 spoIVCA; site-specific DNA recombinase
D JOS54_06645 recombinase family protein K06400 spoIVCA; site-specific DNA recombinase
D JOS54_01590 recombinase family protein K06400 spoIVCA; site-specific DNA recombinase
D JOS54_04370 recombinase family protein K06400 spoIVCA; site-specific DNA recombinase
C 99993 Cell motility
C 99995 Signaling proteins
D JOS54_06355 typA; translational GTPase TypA K06207 typA; GTP-binding protein
D JOS54_04000 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D JOS54_07580 glycoside hydrolase family 25 protein K07273 acm; lysozyme
D JOS54_00955 CapA family protein K07282 capA; gamma-polyglutamate biosynthesis protein CapA
C 99994 Others
D JOS54_06460 copper homeostasis protein CutC K06201 cutC; copper homeostasis protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D JOS54_05010 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D JOS54_07265 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D JOS54_04310 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D JOS54_04325 SufD family Fe-S cluster assembly protein K09015 sufD; Fe-S cluster assembly protein SufD
D JOS54_01260 phage holin family protein K08972 K08972; putative membrane protein
C 99997 Function unknown
D JOS54_00525 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein
D JOS54_02780 SPASM domain-containing protein K06871 K06871; uncharacterized protein
D JOS54_03000 SPASM domain-containing protein K06871 K06871; uncharacterized protein
D JOS54_07050 TPM domain-containing protein K06872 K06872; uncharacterized protein
D JOS54_01350 HD domain-containing protein K06885 K06885; uncharacterized protein
D JOS54_04355 alpha/beta hydrolase K06889 K06889; uncharacterized protein
D JOS54_07555 Bax inhibitor-1/YccA family protein K06890 K06890; uncharacterized protein
D JOS54_02120 KH domain-containing protein K06960 K06960; uncharacterized protein
D JOS54_02145 N-acetyltransferase K06975 K06975; uncharacterized protein
D JOS54_03460 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein
D JOS54_05365 PTS transporter subunit IIC K07035 K07035; uncharacterized protein
D JOS54_03640 YfcE family phosphodiesterase K07095 K07095; uncharacterized protein
D JOS54_05080 yfcE; phosphodiesterase K07095 K07095; uncharacterized protein
D JOS54_03745 hypothetical protein K07098 K07098; uncharacterized protein
D JOS54_00770 YeeE/YedE family protein K07112 K07112; uncharacterized protein
D JOS54_07390 ATP-binding protein K07133 K07133; uncharacterized protein
D JOS54_02755 TIGR01212 family radical SAM protein K07139 K07139; uncharacterized protein
D JOS54_01890 hypothetical protein K07149 K07149; uncharacterized protein
D JOS54_02340 hypothetical protein K07149 K07149; uncharacterized protein
D JOS54_01645 DUF554 domain-containing protein K07150 K07150; uncharacterized protein
D JOS54_03405 DNA-binding protein K09787 K09787; uncharacterized protein
D JOS54_01480 YaaA family protein K09861 K09861; uncharacterized protein
D JOS54_00470 CbrC family protein K09925 K09925; uncharacterized protein
D JOS54_06485 DUF871 domain-containing protein K09963 K09963; uncharacterized protein
D JOS54_04570 YneF family protein K09976 K09976; uncharacterized protein
D JOS54_00250 DUF2156 domain-containing protein K01163 K01163; uncharacterized protein
D JOS54_02970 ribosomal-processing cysteine protease Prp K07584 ysxB; uncharacterized protein
D JOS54_01210 DUF402 domain-containing protein K07586 ygaC; uncharacterized protein
D JOS54_03120 YlxR family protein K07742 ylxR; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 10, 2024