+F Repair protein KO
#
DNA Repair and Recombination Proteins - Cicer arietinum (chickpea)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 101494093 alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 101514229 activating signal cointegrator 1 complex subunit 3 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 101490127 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 101508480 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 101513350 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 101513551 A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 101490359 uncharacterized LOC101490359 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 101515445 N-glycosylase/DNA lyase OGG1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 101511061 endonuclease III homolog 1, chloroplastic-like K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 101495043 endonuclease III homolog 1, chloroplastic K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 101512126 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 101512452 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 101493577 DNA-(apurinic or apyrimidinic site) lyase 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 101492775 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 101507368 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 101491492 DNA polymerase delta subunit 3 K03504 POLD3; DNA polymerase delta subunit 3
F 101504287 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 101514286 DNA polymerase epsilon catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 101506947 DNA polymerase epsilon subunit 2 K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 101489242 DNA polymerase epsilon subunit 2-like K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 101491905 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 101508463 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 101504587 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 101509971 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 101501097 DNA-repair protein XRCC1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 101515631 tyrosyl-DNA phosphodiesterase 1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 101510807 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 101515758 polynucleotide 3'-phosphatase ZDP K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 101499677 DNA polymerase beta K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 101510349 poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 101514608 putative poly [ADP-ribose] polymerase 3 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 101488737 poly [ADP-ribose] polymerase 2 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 101502397 DNA repair protein complementing XP-C cells homolog K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 101491478 ubiquitin receptor RAD23b-like K10839 RAD23; UV excision repair protein RAD23
F 101500479 ubiquitin receptor RAD23d-like K10839 RAD23; UV excision repair protein RAD23
F 101501685 ubiquitin receptor RAD23c-like K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 101503002 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 101496300 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 101512663 cullin-4 K10609 CUL4; cullin 4
F 101506983 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 101499945 protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 101493926 uncharacterized LOC101493926 K15082 RAD7; DNA repair protein RAD7
F 101509869 uncharacterized LOC101509869 K15082 RAD7; DNA repair protein RAD7
F 101497977 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 101489580 DNA-directed RNA polymerase II subunit 1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 101504170 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 101498093 DNA-directed RNA polymerases II, IV and V subunit 3-like K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 101499719 DNA-directed RNA polymerases IV and V subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 101504109 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 101510430 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 101500708 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 101503264 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 101505518 DNA-directed RNA polymerase V subunit 5C-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 101509909 DNA-directed RNA polymerase V subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 101512942 DNA-directed RNA polymerases IV and V subunit 5B-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 101503471 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 101499845 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 101494253 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 101511180 DNA-directed RNA polymerase II subunit RPB7-like K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 101489651 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 101512443 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 101490143 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 101489991 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 101494736 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 101506043 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 101510645 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 101494979 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F 101490471 DNA-directed RNA polymerases II, IV and V subunit 12-like K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 101503002 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 101496300 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 101512663 cullin-4 K10609 CUL4; cullin 4
F 101506983 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 101499900 DNA excision repair protein ERCC-8 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 101495858 protein CHROMATIN REMODELING 8 K10841 ERCC6; DNA excision repair protein ERCC-6
F 101511005 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 101497103 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 101491998 DNA repair helicase XPB1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 101515105 DNA repair helicase UVH6 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 101509283 probable RNA polymerase II transcription factor B subunit 1-1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 101499964 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 101493530 general transcription factor IIH subunit 3 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 101502894 general transcription factor IIH subunit 4 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 101491331 general transcription factor IIH subunit 5-like K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 101507280 general transcription factor IIH subunit 5-like K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 101510875 cyclin-dependent kinase D-3-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 101514348 cyclin-H1-1 K06634 CCNH; cyclin H
E 101507540 cyclin-H1-1-like K06634 CCNH; cyclin H
E 101497666 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 101512477 replication protein A 70 kDa DNA-binding subunit E-like K07466 RFA1; replication factor A1
E 101491004 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 101512677 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 101488975 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 101497890 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 101489189 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 101513581 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Other NER factors
E 101508212 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 101490549 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 101493619 DNA repair protein UVH3 K10846 ERCC5; DNA excision repair protein ERCC-5
E 101509971 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 101495813 uncharacterized LOC101495813 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 101513221 cullin-3A-like K03869 CUL3; cullin 3
E 101515173 cullin-3A-like K03869 CUL3; cullin 3
E 101513229 cullin-3A-like K03869 CUL3; cullin 3
E 101510626 transcription elongation factor B polypeptide 1 K03872 ELOC; elongin-C
E 101503565 ubiquitin K03873 ELOB; elongin-B
E 101508994 transcription elongation factor B polypeptide 3 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 101505823 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 101502126 DNA mismatch repair protein MSH3 K08736 MSH3; DNA mismatch repair protein MSH3
E 101513237 DNA mismatch repair protein MSH7 K08737 MSH6; DNA mismatch repair protein MSH6
E 101498481 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 101503626 DNA mismatch repair protein MLH1 K08734 MLH1; DNA mismatch repair protein MLH1
E 101497606 DNA mismatch repair protein PMS1 K10858 PMS2; DNA mismatch repair protein PMS2
E 101500178 DNA mismatch repair protein MLH3 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 101492775 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 101507368 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 101491492 DNA polymerase delta subunit 3 K03504 POLD3; DNA polymerase delta subunit 3
E 101504287 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 101512477 replication protein A 70 kDa DNA-binding subunit E-like K07466 RFA1; replication factor A1
E 101491004 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 101512677 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 101488975 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 101497890 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 101489189 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 101513581 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 101513194 replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E 101510692 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 101496446 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 101505338 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
E 101491458 uncharacterized LOC101491458 K10756 RFC3_5; replication factor C subunit 3/5
E 101510394 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 101497695 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 101507562 uncharacterized LOC101507562 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 101508463 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 101507566 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 101511143 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 101509971 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 101502177 WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 101499107 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 101491365 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 101502410 nijmegen breakage syndrome 1 protein K10867 NBN; nibrin
D BRCA1-core complex
E 101504294 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
E 101498370 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 101514695 uncharacterized LOC101514695 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 101490421 BRCA1-A complex subunit BRE-like K12173 BRE; BRCA1-A complex subunit BRE
E 101499060 BRCA1-A complex subunit BRE-like K12173 BRE; BRCA1-A complex subunit BRE
E 101493878 lys-63-specific deubiquitinase BRCC36-like K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 101488528 Fanconi anemia group J protein homolog K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 101497364 Fanconi anemia group J protein homolog K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 101489302 DNA topoisomerase 2-binding protein 1-A K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 101505866 BRCT domain-containing protein At4g02110 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 101499107 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 101491365 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 101502410 nijmegen breakage syndrome 1 protein K10867 NBN; nibrin
D BRCA complex
E 101498291 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 101498982 DNA repair protein RAD51 homolog 1 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 101498982 DNA repair protein RAD51 homolog 1 K04482 RAD51; DNA repair protein RAD51
E 101498210 DNA repair protein RAD51 homolog 2 K10869 RAD51L1; RAD51-like protein 1
E 101498528 DNA repair protein RAD51 homolog 3 K10870 RAD51L2; RAD51-like protein 2
E 101510404 DNA repair protein RAD51 homolog 4 K10871 RAD51L3; RAD51-like protein 3
E 101512009 DNA repair protein XRCC2 homolog K10879 XRCC2; DNA-repair protein XRCC2
E 101495881 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 101491672 uncharacterized LOC101491672 K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 101501011 uncharacterized LOC101501011 K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 101500235 SNF2 domain-containing protein CLASSY 1-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 101502194 SNF2 domain-containing protein CLASSY 3-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 101515621 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 101491973 SNF2 domain-containing protein CLASSY 4 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 101508296 SNF2 domain-containing protein CLASSY 1-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 101514247 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 101503147 mediator of RNA polymerase II transcription subunit 34 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 101498592 ATP-dependent DNA helicase Q-like SIM K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 101514724 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 101510078 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 101502373 ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 101514724 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 101510078 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 101494498 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 101498855 DNA topoisomerase 3-beta K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 101512002 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 101499092 recQ-mediated genome instability protein 2 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 101512477 replication protein A 70 kDa DNA-binding subunit E-like K07466 RFA1; replication factor A1
E 101491004 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 101512677 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 101488975 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 101497890 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 101489189 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 101513581 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 101488931 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 101493660 serine/threonine-protein phosphatase 4 regulatory subunit 2 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 101490977 serine/threonine-protein phosphatase 4 regulatory subunit 3 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 101506560 serine/threonine-protein phosphatase 4 regulatory subunit 3-like K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 101508682 AP-5 complex subunit beta-1-like K19022 AP5B1; AP-5 complex subunit beta-1
E 101499235 AP-5 complex subunit beta-1-like K19022 AP5B1; AP-5 complex subunit beta-1
E 101515477 AP-5 complex subunit mu K19023 AP5M1; AP-5 complex subunit mu-1
E 101494199 AP-5 complex subunit zeta-1 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 101505882 structural maintenance of chromosomes protein 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E 101503376 structural maintenance of chromosomes protein 6A-like K22804 SMC6; structural maintenance of chromosomes protein 6
E 101512852 non-structural maintenance of chromosomes element 1 homolog K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 101512835 E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 101498844 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 101504888 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 101507834 crossover junction endonuclease EME1B-like K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 101505642 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 101502148 probable 26S proteasome complex subunit sem1-2 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 101498619 uncharacterized LOC101498619 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 101504481 structure-specific endonuclease subunit slx1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 101490362 flap endonuclease GEN-like 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 101502119 flap endonuclease GEN-like 2 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 101511453 uncharacterized LOC101511453 K19026 SPG11; spatacsin
E 101502765 protein DDB_G0276689 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 101490333 protein MRG1 K11339 MORF4L1; mortality factor 4-like protein 1
E 101509629 protein MRG2 K11339 MORF4L1; mortality factor 4-like protein 1
E 101503017 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 101504743 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 101502708 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 101503673 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 101504746 fidgetin-like protein 1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 101494592 zinc finger SWIM domain-containing protein 7-like K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 101496655 zinc finger SWIM domain-containing protein 7-like K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 101490726 Werner Syndrome-like exonuclease K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 101488900 DNA-dependent metalloprotease WSS1-like K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 101505345 DNA-dependent metalloprotease WSS1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 101494451 single-stranded DNA-binding protein WHY1, chloroplastic-like K26559 WHY1; single-stranded DNA-binding protein WHY1
E 101490579 single-stranded DNA-bindig protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 101495447 ATP-dependent DNA helicase 2 subunit KU70 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 101502782 ATP-dependent DNA helicase 2 subunit KU80-like K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
E 105851069 ATP-dependent DNA helicase 2 subunit KU80-like K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 101499107 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
E 101491365 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 101512446 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 101497506 DNA repair protein XRCC4 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 101499677 DNA polymerase beta K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 101510807 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 101497783 uncharacterized LOC101497783 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 101490815 uncharacterized LOC101490815 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E 101500990 Fanconi anemia group M protein homolog K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 101491363 centromere protein S K11511 APITD1; centromere protein S
E 101498263 centromere protein X K15360 STRA13; centromere protein X
D Bloom's syndrome complex (BTR)
E 101514724 ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 101510078 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 101494498 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 101498855 DNA topoisomerase 3-beta K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 101512002 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 101499092 recQ-mediated genome instability protein 2 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
D Downstream FA components
E 101498291 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 101488528 Fanconi anemia group J protein homolog K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 101497364 Fanconi anemia group J protein homolog K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 101494976 fanconi-associated nuclease 1 homolog K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 101498982 DNA repair protein RAD51 homolog 1 K04482 RAD51; DNA repair protein RAD51
E 101498528 DNA repair protein RAD51 homolog 3 K10870 RAD51L2; RAD51-like protein 2
E 101493854 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
E 101488963 WD repeat-containing protein 48-like K15361 WDR48; WD repeat-containing protein 48
E 101491434 WD repeat-containing protein 48 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 101515338 phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 101492111 serine/threonine-protein phosphatase 6 regulatory subunit 3-B-like K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 101510088 serine/threonine-protein phosphatase 6 regulatory subunit 3-like K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 101494402 serine/threonine-protein phosphatase 6 regulatory subunit 3 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 101507105 telomerase Cajal body protein 1 K23314 WRAP53; telomerase Cajal body protein 1
E 101505847 WD repeat-containing protein 70 K24752 WDR70; WD repeat-containing protein 70
E 101502177 WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 101504390 DNA polymerase eta K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 101496826 DNA polymerase kappa K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 101491192 DNA repair protein REV1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 101503172 DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 101489466 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 101490547 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 101503995 uncharacterized LOC101503995 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 101490528 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 101494903 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 101497492 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 101512077 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 101497310 ubiquitin-conjugating enzyme E2 variant 1B-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 101499527 ubiquitin-conjugating enzyme E2 35 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 101508463 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 101498716 cell cycle checkpoint control protein RAD9A K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 101499743 uncharacterized LOC101499743 K10903 HUS1; HUS1 checkpoint protein
D 101513374 uncharacterized LOC101513374 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 101499932 cell cycle checkpoint protein RAD17 K06662 HRAD17; cell cycle checkpoint protein
D 101510692 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 101496446 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 101505338 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D 101491458 uncharacterized LOC101491458 K10756 RFC3_5; replication factor C subunit 3/5
D 101510394 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 101497695 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 101507562 uncharacterized LOC101507562 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 101513374 uncharacterized LOC101513374 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 101504155 protein timeless homolog K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 101496991 TIMELESS-interacting protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 101493854 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
D 101491762 uncharacterized LOC101491762 K20403 TTI1; TELO2-interacting protein 1
D 101508572 uncharacterized protein At2g39910 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 101508078 large proline-rich protein bag6-A K23390 BAG6; large proline-rich protein BAG6
D 101511013 Golgi to ER traffic protein 4 homolog K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 101507285 serine/threonine-protein kinase ATR K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 101498080 serine/threonine-protein kinase ATM K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 101501220 14-3-3; 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 101501305 14-3-3-like protein C K06630 YWHAE; 14-3-3 protein epsilon
D 101498552 14-3-3-like protein D K06630 YWHAE; 14-3-3 protein epsilon
D 101495784 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 101506053 1433; 14-3-3-like protein A-like K06630 YWHAE; 14-3-3 protein epsilon
D 101504384 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 101500449 14-3-3; 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 101500358 14-3-3-like protein C K06630 YWHAE; 14-3-3 protein epsilon
D 101503570 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 101489978 14-3-3 protein 7-like K06630 YWHAE; 14-3-3 protein epsilon
D 101506941 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 101501524 uncharacterized LOC101501524 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 101505876 serine/threonine-protein kinase Nek4-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 101491529 serine/threonine-protein kinase Nek6 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 101504622 serine/threonine-protein kinase Nek5-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 101496306 serine/threonine-protein kinase Nek2-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 101512384 serine/threonine-protein kinase Nek5-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 101494721 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 101496848 serine/threonine-protein kinase Nek4 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 101513139 protein downstream neighbor of Son K22422 DONSON; protein downstream neighbor of Son
D 101509656 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 101511576 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 101507489 protein SDE2 homolog K25059 SDE2; replication stress response regulator SDE2
D 101511891 protein DECREASED SIZE EXCLUSION LIMIT 1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 101501811 helicase and polymerase-containing protein TEBICHI K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 101502379 DNA polymerase V K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 101495971 DNA-directed primase/polymerase protein K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 101494492 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 101491110 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 101515128 5' exonuclease Apollo K15340 DCLRE1A; DNA cross-link repair 1A protein
D 101500618 5' exonuclease Apollo K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 101494896 exonuclease V, chloroplastic-like K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 101502681 exonuclease V, chloroplastic-like K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 101496651 endonuclease V K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 101489091 DNA annealing helicase and endonuclease ZRANB3 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 101502780 endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 101495224 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 101510286 endonuclease 4-like K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 101505148 switch 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 101510265 pre-mRNA-processing factor 19 homolog 2 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 101511962 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 101508673 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 101511374 protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 101498246 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 101493322 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 101492096 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 101511040 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 101505566 ribonucleoside-diphosphate reductase large subunit-like K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 101495492 ribonucleoside-diphosphate reductase small chain A K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 101510341 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 101510021 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 101490127 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 101508480 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 101502665 DNA-3-methyladenine glycosylase 1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 101503586 probable DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 101513350 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 101513551 A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 101513111 uncharacterized LOC101513111 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 101509847 uncharacterized LOC101509847 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 101512572 uncharacterized LOC101512572 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 101488571 uncharacterized LOC101488571 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 101508282 uncharacterized LOC101508282 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 101515272 uncharacterized LOC101515272 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 101500749 uncharacterized LOC101500749 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 101507744 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 101511061 endonuclease III homolog 1, chloroplastic-like K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 101495043 endonuclease III homolog 1, chloroplastic K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 101512126 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 101512452 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 101510799 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 101510274 DNA polymerase I B, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 101490997 DNA polymerase I A, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 101510274 DNA polymerase I B, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 101490997 DNA polymerase I A, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 6797471 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 6797499 rpoC1; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 6797566 rpoC2; RNA polymerase beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 6797532 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 101503544 uncharacterized LOC101503544 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 101514787 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 101506562 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 101494938 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 101498491 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 101506562 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 101494938 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 101498491 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 101498101 uncharacterized LOC101498101 K04485 radA; DNA repair protein RadA/Sms
E 101492041 uncharacterized LOC101492041 K04485 radA; DNA repair protein RadA/Sms
E 101501281 uncharacterized LOC101501281 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 101509952 DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 101504136 DNA gyrase subunit B, chloroplastic/mitochondrial K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 101490066 putative ATP-dependent DNA helicase Q1 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 101506562 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
D 101494938 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
D 101498491 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D 101514787 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 101498246 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 101493322 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 101492096 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024