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Transcription Machinery - Cuculus canorus (common cuckoo)
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E 104064999 POLR2B; DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E 104068354 POLR2C; DNA-directed RNA polymerase II subunit RPB3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
E 104058619 POLR2J; DNA-directed RNA polymerase II subunit RPB11-a K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
D Pol II specific subunits
E 104066382 POLR2D; DNA-directed RNA polymerase II subunit RPB4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E 104064847 POLR2I; DNA-directed RNA polymerase II subunit RPB9 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E 104065784 POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 104065877 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 104057832 POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 104056724 POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
E 104059619 GTF2A1; transcription initiation factor IIA subunit 1 K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E 104060715 GTF2A1L; TFIIA-alpha and beta-like factor K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E 104054344 GTF2A2; transcription initiation factor IIA subunit 2 K03123 TFIIA2; transcription initiation factor TFIIA small subunit
D TFIIB
E 104055422 GTF2B; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D TFIID
E 104064710 TBP; TATA-box-binding protein isoform X1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 104057474 TBPL2; TATA box-binding protein-like protein 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 104058231 TBPL1; TATA box-binding protein-like protein 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 104069006 TAF1; transcription initiation factor TFIID subunit 1 K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]
E 104066199 TAF2; transcription initiation factor TFIID subunit 2 K03128 TAF2; transcription initiation factor TFIID subunit 2
E 104066349 TAF3; transcription initiation factor TFIID subunit 3 K14650 TAF3; transcription initiation factor TFIID subunit 3
E 104061180 TAF4; transcription initiation factor TFIID subunit 4 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 104061342 TAF4B; transcription initiation factor TFIID subunit 4B K03129 TAF4; transcription initiation factor TFIID subunit 4
E 104054721 TAF5; transcription initiation factor TFIID subunit 5 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 104060334 TAF5L; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 104063828 TAF6; transcription initiation factor TFIID subunit 6 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 104069016 TAF7L; transcription initiation factor TFIID subunit 7-like K03132 TAF7; transcription initiation factor TFIID subunit 7
E 104060294 TAF8; transcription initiation factor TFIID subunit 8 K14649 TAF8; transcription initiation factor TFIID subunit 8
E 104054294 TAF9B; transcription initiation factor TFIID subunit 9B K14535 TAF9; transcription initiation factor TFIID subunit 9
E 104064943 TAF11; transcription initiation factor TFIID subunit 11 K03135 TAF11; transcription initiation factor TFIID subunit 11
E 104063137 TAF12; transcription initiation factor TFIID subunit 12 K03126 TAF12; transcription initiation factor TFIID subunit 12
E 104055847 TAF13; transcription initiation factor TFIID subunit 13 K03127 TAF13; transcription initiation factor TFIID subunit 13
E 104058669 TAF15; TATA-binding protein-associated factor 2N K14651 TAF15; transcription initiation factor TFIID subunit 15
D TFIIE
E 104055820 GTF2E1; general transcription factor IIE subunit 1 K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 104067122 general transcription factor IIE subunit 1-like K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 104063877 GTF2E2; transcription initiation factor IIE subunit beta K03137 TFIIE2; transcription initiation factor TFIIE subunit beta
D TFIIF
E 104056530 GTF2F2; general transcription factor IIF subunit 2 K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E 104068889 GTF2H1; general transcription factor IIH subunit 1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 104059505 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 104068414 GTF2H3; general transcription factor IIH subunit 3 isoform X1 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 104056404 ERCC3; TFIIH basal transcription factor complex helicase XPB subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 104068689 ERCC2; LOW QUALITY PROTEIN: TFIIH basal transcription factor complex helicase XPD subunit K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 104061464 GTF2H5; general transcription factor IIH subunit 5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 104064008 CDK7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 104062358 MNAT1; CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E 104061056 CCNH; cyclin-H K06634 CCNH; cyclin H
C Mediator complex
D Head
E 104061702 MED6; mediator of RNA polymerase II transcription subunit 6 K15128 MED6; mediator of RNA polymerase II transcription subunit 6
E 104057539 MED8; mediator of RNA polymerase II transcription subunit 8 K15129 MED8; mediator of RNA polymerase II transcription subunit 8
E 104064090 MED17; mediator of RNA polymerase II transcription subunit 17 K15133 MED17; mediator of RNA polymerase II transcription subunit 17
E 104056379 MED18; mediator of RNA polymerase II transcription subunit 18 K15135 MED18; mediator of RNA polymerase II transcription subunit 18
E 104062061 MED19; mediator of RNA polymerase II transcription subunit 19 K15137 MED19; mediator of RNA polymerase II transcription subunit 19
E 104067076 MED20; mediator of RNA polymerase II transcription subunit 20 K13528 MED20; mediator of RNA polymerase II transcription subunit 20
E 104066823 MED22; mediator of RNA polymerase II transcription subunit 22 K15139 MED22; mediator of RNA polymerase II transcription subunit 22
E 104067468 MED28; mediator of RNA polymerase II transcription subunit 28 K15141 MED28; mediator of RNA polymerase II transcription subunit 28
E 104068690 MED29; mediator of RNA polymerase II transcription subunit 29 K15142 MED29; mediator of RNA polymerase II transcription subunit 29
E 104066186 MED30; mediator of RNA polymerase II transcription subunit 30 isoform X1 K15143 MED30; mediator of RNA polymerase II transcription subunit 30
D Middle
E 104055554 MED1; mediator of RNA polymerase II transcription subunit 1 K15144 MED1; mediator of RNA polymerase II transcription subunit 1
E 104058223 MED4; mediator of RNA polymerase II transcription subunit 4 K15146 MED4; mediator of RNA polymerase II transcription subunit 4
E 104063083 MED7; mediator of RNA polymerase II transcription subunit 7 K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E 104062530 MED9; mediator of RNA polymerase II transcription subunit 9 K15149 MED9; mediator of RNA polymerase II transcription subunit 9
E 104067536 MED10; mediator of RNA polymerase II transcription subunit 10 K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E 104067405 MED21; mediator of RNA polymerase II transcription subunit 21 K15152 MED21; mediator of RNA polymerase II transcription subunit 21
E 104057316 MED31; mediator of RNA polymerase II transcription subunit 31 K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
E 104057469 MED14; mediator of RNA polymerase II transcription subunit 14 K15156 MED14; mediator of RNA polymerase II transcription subunit 14
E 104068446 MED15; mediator of RNA polymerase II transcription subunit 15 isoform X1 K15157 MED15; mediator of RNA polymerase II transcription subunit 15
E 104067719 MED16; mediator of RNA polymerase II transcription subunit 16 K15159 MED16; mediator of RNA polymerase II transcription subunit 16
D CDK-module
E 104064226 CDK8; cyclin-dependent kinase 8 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E 104062751 CDK19; cyclin-dependent kinase 19 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E 104062432 CCNC; cyclin-C K15161 CCNC; cyclin-C
E 104069039 MED12; mediator of RNA polymerase II transcription subunit 12 K15162 MED12; mediator of RNA polymerase II transcription subunit 12
E 104065242 MED12L; mediator of RNA polymerase II transcription subunit 12-like protein K15162 MED12; mediator of RNA polymerase II transcription subunit 12
E 104059362 MED13L; mediator of RNA polymerase II transcription subunit 13-like K15164 MED13; mediator of RNA polymerase II transcription subunit 13
E 104064958 MED13; mediator of RNA polymerase II transcription subunit 13 K15164 MED13; mediator of RNA polymerase II transcription subunit 13
D Other mediators
E 104061028 mediator of RNA polymerase II transcription subunit 23-like K15166 MED23; mediator of RNA polymerase II transcription subunit 23
E 104067754 MED24; mediator of RNA polymerase II transcription subunit 24 isoform X1 K15167 MED24; mediator of RNA polymerase II transcription subunit 24
E 104060950 MED26; mediator of RNA polymerase II transcription subunit 26 K15169 MED26; mediator of RNA polymerase II transcription subunit 26
E 104066816 MED27; mediator of RNA polymerase II transcription subunit 27 isoform X1 K15170 MED27; mediator of RNA polymerase II transcription subunit 27
C Coactivators
D SAGA/TFTC/STAGA complex
E 104054482 KAT2A; histone acetyltransferase KAT2A K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E 104067579 KAT2B; LOW QUALITY PROTEIN: histone acetyltransferase KAT2B K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E 104066000 LOW QUALITY PROTEIN: transformation/transcription domain-associated protein-like K08874 TRRAP; transformation/transcription domain-associated protein
E 104064972 TADA2A; transcriptional adapter 2-alpha K11314 TADA2A; transcriptional adapter 2-alpha
E 104062598 TADA2B; transcriptional adapter 2-beta K15127 TADA2B; transcriptional adapter 2-beta
E 104063614 TADA3; transcriptional adapter 3 K11315 TADA3; transcriptional adapter 3
E 104058368 TADA1; transcriptional adapter 1 K11317 TADA1; transcriptional adapter 1
E 104066199 TAF2; transcription initiation factor TFIID subunit 2 K03128 TAF2; transcription initiation factor TFIID subunit 2
E 104061180 TAF4; transcription initiation factor TFIID subunit 4 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 104061342 TAF4B; transcription initiation factor TFIID subunit 4B K03129 TAF4; transcription initiation factor TFIID subunit 4
E 104054721 TAF5; transcription initiation factor TFIID subunit 5 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 104060334 TAF5L; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 104063828 TAF6; transcription initiation factor TFIID subunit 6 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 104069016 TAF7L; transcription initiation factor TFIID subunit 7-like K03132 TAF7; transcription initiation factor TFIID subunit 7
E 104054294 TAF9B; transcription initiation factor TFIID subunit 9B K14535 TAF9; transcription initiation factor TFIID subunit 9
E 104063137 TAF12; transcription initiation factor TFIID subunit 12 K03126 TAF12; transcription initiation factor TFIID subunit 12
E 104068269 ATXN7L3; ataxin-7-like protein 3 {ECO:0000255|HAMAP-Rule:MF_03047} K11363 SGF11; SAGA-associated factor 11
E 104062221 SUPT7L; STAGA complex 65 subunit gamma K11316 SUPT7L; STAGA complex 65 subunit gamma
E 104056070 ATXN7L1; ataxin-7-like protein 1 isoform X1 K11318 ATXN7; ataxin-7
E 104061201 ATXN7; ataxin-7 K11318 ATXN7; ataxin-7
E 104058393 CHD1; chromodomain-helicase-DNA-binding protein 1 K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E 104060266 ENY2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 104062503 USP22; ubiquitin carboxyl-terminal hydrolase 22 isoform X1 K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E 104067237 SF3B3; splicing factor 3B subunit 3 K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E 104055062 SMARCA2; probable global transcription activator SNF2L2 isoform X1 K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E 104067773 SMARCA4; transcription activator BRG1 K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E 104064156 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E 104055659 SMARCC2; SWI/SNF complex subunit SMARCC2 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 104061602 SMARCC1; SWI/SNF complex subunit SMARCC1 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 104054396 SMARCD2; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 104055136 SMARCD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 104061719 SMARCD3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 104054425 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
E 104059446 ACTG1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 104066279 actin, cytoplasmic type 5 isoform X1 K05692 ACTB_G1; actin beta/gamma 1
E 104062514 ACTB; actin, cytoplasmic 1 isoform X1 K05692 ACTB_G1; actin beta/gamma 1
E 104057885 ACTL6A; actin-like protein 6A K11340 ACTL6A; actin-like protein 6A
E 104061532 ARID1A; LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1A K11653 ARID1; AT-rich interactive domain-containing protein 1
E 104067585 ARID1B; AT-rich interactive domain-containing protein 1B K11653 ARID1; AT-rich interactive domain-containing protein 1
E 104062410 ARID2; AT-rich interactive domain-containing protein 2 K11765 ARID2; AT-rich interactive domain-containing protein 2
E 104066698 PBRM1; protein polybromo-1 isoform X1 K11757 PBRM1; protein polybromo-1
D SWI/SNF complex
E 104064156 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
D RSC complex
D Others
E 104064450 SUB1; activated RNA polymerase II transcriptional coactivator p15 K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
E 104064998 activated RNA polymerase II transcriptional coactivator p15-like K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
E 104065664 CCAR1; cell division cycle and apoptosis regulator protein 1 isoform X1 K25827 CCAR1; cell division cycle and apoptosis regulator protein 1
C Other transcription-related factors
D Transcription elongation factors
E 104063145 TCEA3; transcription elongation factor A protein 3 K03145 TFIIS; transcription elongation factor S-II
E 104060829 TCEA2; transcription elongation factor A protein 2 K03145 TFIIS; transcription elongation factor S-II
E 104067666 TCEA1; transcription elongation factor A protein 1 K03145 TFIIS; transcription elongation factor S-II
E 104057363 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 104068687 SUPT5H; transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
E 104058650 SUPT6H; transcription elongation factor SPT6 K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E 104055834 TTF2; LOW QUALITY PROTEIN: transcription termination factor 2 K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-]
E 104062982 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 104066459 CPSF3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 104059487 CPSF4L; putative cleavage and polyadenylation specificity factor subunit 4-like protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 104062534 CPSF4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 104063360 PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104058812 PPP1CC; LOW QUALITY PROTEIN: serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104062217 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104059814 SYMPK; symplekin K06100 SYMPK; symplekin
E 104055603 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 104059321 XRN2; LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 104060855 RPRD1B; regulation of nuclear pre-mRNA domain-containing protein 1B K15559 RTT103; regulator of Ty1 transposition protein 103
E 104061114 RPRD1A; regulation of nuclear pre-mRNA domain-containing protein 1A K15559 RTT103; regulator of Ty1 transposition protein 103
E 104067590 SCAF8; LOW QUALITY PROTEIN: protein SCAF8 K13191 RBM16; RNA-binding protein 16
E 104064766 SCAF4; splicing factor, arginine/serine-rich 15 K13167 SCAF4; SR-related and CTD-associated factor 4
E 104066924 SETX; probable helicase senataxin K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3]
E 104063336 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E 104054756 CDC73; parafibromin K15175 CDC73; parafibromin
E 104061840 CTR9; RNA polymerase-associated protein CTR9 homolog K15176 CTR9; RNA polymerase-associated protein CTR9
E 104055239 LEO1; RNA polymerase-associated protein LEO1 isoform X1 K15177 LEO1; RNA polymerase-associated protein LEO1
E 104067277 RTF1; RNA polymerase-associated protein RTF1 homolog K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
E 104060247 NELFA; negative elongation factor A K15179 WHSC2; negative elongation factor A
E 104067515 NELFCD; negative elongation factor C/D K15181 TH1L; negative elongation factor C/D
D Super elongation complex (SEC)
E 104065838 ELL; RNA polymerase II elongation factor ELL K15183 ELL; RNA polymerase II elongation factor ELL
E 104061095 ELL2; RNA polymerase II elongation factor ELL2 K15183 ELL; RNA polymerase II elongation factor ELL
E 104058079 AFF1; AF4/FMR2 family member 1 K15184 AFF1; AF4/FMR2 family member 1
E 104060608 AFF4; AF4/FMR2 family member 4 K15185 AFF4; AF4/FMR2 family member 4
E 104068818 EAF1; ELL-associated factor 1 K15186 EAF; ELL-associated factor
E 104067692 EAF2; ELL-associated factor 2 K15186 EAF; ELL-associated factor
E 104063172 MLLT3; protein AF-9 K15187 MLLT1_3; YEATS domain-containing protein 1/3
E 104065415 MLLT1; protein ENL K15187 MLLT1_3; YEATS domain-containing protein 1/3
E 104065215 CCNT2; cyclin-T2 K15188 CCNT; cyclin T
E 104057954 CCNT1; cyclin-T1 K15188 CCNT; cyclin T
D Little elongation complex (LEC)
E 104065838 ELL; RNA polymerase II elongation factor ELL K15183 ELL; RNA polymerase II elongation factor ELL
E 104061095 ELL2; RNA polymerase II elongation factor ELL2 K15183 ELL; RNA polymerase II elongation factor ELL
E 104055221 ICE1; uncharacterized protein KIAA0947 homolog K26143 ICE1; little elongation complex subunit 1
E 104056879 ICE2; NMDA receptor-regulated protein 2 K26144 ICE2; little elongation complex subunit 2
D Brd4/P-TEFb complex
E 104056049 BRD4; bromodomain-containing protein 4 K11722 BRD4; bromodomain-containing protein 4
E 104065215 CCNT2; cyclin-T2 K15188 CCNT; cyclin T
E 104057954 CCNT1; cyclin-T1 K15188 CCNT; cyclin T
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
E 104063880 LARP7; la-related protein 7 K15191 LARP7; La-related protein 7
E 104065215 CCNT2; cyclin-T2 K15188 CCNT; cyclin T
E 104057954 CCNT1; cyclin-T1 K15188 CCNT; cyclin T
D DBIRD complex
E 104055222 ZNF326; DBIRD complex subunit ZNF326 K13204 ZNF326; zinc finger protein 326
D Others
E 104060155 GTF2I; general transcription factor II-I K03121 TFII-I; transcription initiation factor TFII-I
E 104060055 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1 K27274 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1
E 104067940 BTAF1; TATA-binding protein-associated factor 172 K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E 104055105 DR1; protein Dr1 K21751 DR1; down-regulator of transcription 1
E 104068962 SPTY2D1; protein SPT2 homolog K15193 SPTY2D1; protein SPT2
E 104063100 AFF2; AF4/FMR2 family member 2 K15194 AFF2; AF4/FMR2 family member 2
E 104056701 AFF3; AF4/FMR2 family member 3 K15195 AFF3; AF4/FMR2 family member 3
E 104055757 CTDP1; LOW QUALITY PROTEIN: RNA polymerase II subunit A C-terminal domain phosphatase K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
E 104056683 CTDSP1; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 104056972 CTDSPL; CTD small phosphatase-like protein isoform X1 K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 104066404 IWS1; protein IWS1 homolog K17498 SPN1; transcription factor SPN1
E 104054534 CSRNP3; cysteine/serine-rich nuclear protein 3 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 104059893 CSRNP2; cysteine/serine-rich nuclear protein 2 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 104056980 CSRNP1; cysteine/serine-rich nuclear protein 1 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 104067275 RPAP1; RNA polymerase II-associated protein 1 isoform X1 K20826 RPAP1; RNA polymerase II-associated protein 1
E 104055375 RPAP2; putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16]
E 104065349 RPAP3; RNA polymerase II-associated protein 3 K23002 RPAP3; RNA polymerase II-associated protein 3
E 104057748 CCNK; cyclin-K K23326 CCNK; cyclin K
E 104056306 GPN2; GPN-loop GTPase 2 K24104 GPN; GPN-loop GTPase
E 104066462 GPN1; GPN-loop GTPase 1 K24104 GPN; GPN-loop GTPase
E 104062574 GPN3; GPN-loop GTPase 3 isoform X1 K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E 104063048 POLR3A; DNA-directed RNA polymerase III subunit RPC1 K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E 104063468 POLR3B; DNA-directed RNA polymerase III subunit RPC2 isoform X1 K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E 104058184 POLR1C; DNA-directed RNA polymerases I and III subunit RPAC1 K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E 104060485 DNA-directed RNA polymerases I and III subunit RPAC2-like K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E 104065436 POLR3C; DNA-directed RNA polymerase III subunit RPC3 K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3
E 104068510 POLR3D; DNA-directed RNA polymerase III subunit RPC4 K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4
E 104063767 POLR3E; DNA-directed RNA polymerase III subunit RPC5 isoform X1 K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5
E 104060709 POLR3F; DNA-directed RNA polymerase III subunit RPC6 K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6
E 104061089 POLR3G; DNA-directed RNA polymerase III subunit RPC7 K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7
E 104055493 POLR3H; DNA-directed RNA polymerase III subunit RPC8 isoform X1 K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E 104060245 CRCP; DNA-directed RNA polymerase III subunit RPC9 K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9
E 104066424 POLR3K; DNA-directed RNA polymerase III subunit RPC10 K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E 104065784 POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 104065877 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 104057832 POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 104056724 POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
C Basal transcription factors
D TFIIIA
E 104064229 GTF3A; transcription factor IIIA K09191 GTF3A; general transcription factor IIIA
D TFIIIB
E 104064710 TBP; TATA-box-binding protein isoform X1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 104057474 TBPL2; TATA box-binding protein-like protein 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 104058231 TBPL1; TATA box-binding protein-like protein 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 104062345 BRF1; transcription factor IIIB 90 kDa subunit K15196 BRF1; transcription factor IIIB 90 kDa subunit
E 104068568 BRF2; transcription factor IIIB 50 kDa subunit K15197 BRF2; transcription factor IIIB 50 kDa subunit
E 104059515 BDP1; transcription factor TFIIIB component B'' homolog K15198 BDP1; transcription factor TFIIIB component B''
D TFIIIC
E 104066423 GTF3C1; general transcription factor 3C polypeptide 1 K15199 GTF3C1; general transcription factor 3C polypeptide 1
E 104068790 GTF3C2; general transcription factor 3C polypeptide 2 K15200 GTF3C2; general transcription factor 3C polypeptide 2
E 104066340 GTF3C3; general transcription factor 3C polypeptide 3 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E 104066819 GTF3C4; general transcription factor 3C polypeptide 4 K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48]
E 104066931 GTF3C5; general transcription factor 3C polypeptide 5 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E 104062744 GTF3C6; general transcription factor 3C polypeptide 6 isoform X1 K15203 GTF3C6; general transcription factor 3C polypeptide 6
D TFIIIC, fungi type
E 104066931 GTF3C5; general transcription factor 3C polypeptide 5 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E 104066340 GTF3C3; general transcription factor 3C polypeptide 3 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
E 104062363 SNAPC1; snRNA-activating protein complex subunit 1 K15208 SNAPC1; snRNA-activating protein complex subunit 1
E 104055244 SNAPC3; snRNA-activating protein complex subunit 3 K15210 SNAPC3; snRNA-activating protein complex subunit 3
E 104066950 SNAPC4; snRNA-activating protein complex subunit 4 K09453 SNAPC4; snRNA-activating protein complex subunit 4
D Octamer transcription factors
E 104055978 POU2F1; POU domain, class 2, transcription factor 1 isoform X1 K09364 POU2F; POU domain transcription factor, class 2
E 104067177 POU2F3; POU domain, class 2, transcription factor 3 K09364 POU2F; POU domain transcription factor, class 2
E 104059123 POU domain, class 3, transcription factor 3-like K09367 POU5F; POU domain transcription factor, class 5
D Others
E 104068868 ZNF143; zinc finger protein 143 isoform X1 K20828 ZNF143_76; zinc finger protein 143/76
E 104064934 ZNF76; LOW QUALITY PROTEIN: zinc finger protein 76 K20828 ZNF143_76; zinc finger protein 143/76
E 104060250 MAF1; repressor of RNA polymerase III transcription MAF1 homolog K25817 MAF1; repressor of RNA polymerase III transcription MAF1
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E 104054926 POLR1A; DNA-directed RNA polymerase I subunit RPA1 K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
E 104060746 POLR1B; DNA-directed RNA polymerase I subunit RPA2 K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E 104058184 POLR1C; DNA-directed RNA polymerases I and III subunit RPAC1 K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E 104060485 DNA-directed RNA polymerases I and III subunit RPAC2-like K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E 104061102 POLR1E; DNA-directed RNA polymerase I subunit RPA49 K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
E 104068036 TWISTNB; DNA-directed RNA polymerase I subunit RPA43 K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
E 104064184 DNA-directed RNA polymerase I subunit RPA43-like K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
E 104056397 LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA43-like K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
E 104058259 LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA43-like K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
D Pol I, II, III common subunits
E 104065784 POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 104065877 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 104057832 POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 104056724 POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
C Basal transcription factors
D SL1/TIF-1B
E 104064710 TBP; TATA-box-binding protein isoform X1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 104057474 TBPL2; TATA box-binding protein-like protein 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 104058231 TBPL1; TATA box-binding protein-like protein 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 104067024 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A
E 104066455 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B
E 104056591 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C
E 104064191 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D
C Other transcription-related factors
D UBF
E 104068270 UBTF; nucleolar transcription factor 1 isoform X1 K09273 UBTF; upstream-binding transcription factor
D Transcription initiation factors
E 104058774 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
D Transcription elongation factors
E 104057363 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 104068687 SUPT5H; transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
D NoRC (nucleolar remodeling complex)
E 104067519 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
E 104057946 BAZ2A; bromodomain adjacent to zinc finger domain protein 2A K15224 BAZ2A; bromodomain adjacent to zinc finger domain protein 2A
D CTDK-I complex
D Transcription termination factors
E 104066818 TTF1; transcription termination factor 1 K15225 TTF1; transcription termination factor 1
E 104054403 PTRF; polymerase I and transcript release factor K19387 PTRF; polymerase I and transcript release factor
D Others
E 104067983 NOLC1; nucleolar and coiled-body phosphoprotein 1 K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1
#
AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
E 104055422 GTF2B; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D TFE
E 104055820 GTF2E1; general transcription factor IIE subunit 1 K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 104067122 general transcription factor IIE subunit 1-like K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024