+D GENES KO
#
KEGG Orthology (KO) - Cysteiniphilum sp. QT6929
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:cys00010]
D NYP54_01315 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NYP54_08270 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D NYP54_04130 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NYP54_08820 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D NYP54_10680 fba; fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D NYP54_08835 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D NYP54_10665 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NYP54_10670 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D NYP54_05890 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D NYP54_10675 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NYP54_02860 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D NYP54_02855 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D NYP54_02850 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NYP54_00185 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NYP54_10695 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NYP54_03690 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NYP54_02475 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:cys00020]
D NYP54_05860 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D NYP54_05250 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D NYP54_05635 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D NYP54_03595 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D NYP54_03585 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D NYP54_02850 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NYP54_07445 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D NYP54_03605 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D NYP54_03600 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NYP54_03615 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D NYP54_03610 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D NYP54_09060 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D NYP54_00500 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D NYP54_10585 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NYP54_02475 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D NYP54_02860 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D NYP54_02855 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:cys00030]
D NYP54_04130 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NYP54_04140 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D NYP54_04135 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D NYP54_09175 gnd; decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D NYP54_01085 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D NYP54_10660 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D NYP54_00305 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D NYP54_09300 hypothetical protein K00616 TALDO1; transaldolase [EC:2.2.1.2]
D NYP54_07605 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D NYP54_03085 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D NYP54_10755 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D NYP54_03090 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D NYP54_03690 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NYP54_04080 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D NYP54_10680 fba; fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D NYP54_08820 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:cys00040]
D NYP54_08395 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NYP54_08515 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NYP54_01085 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:cys00051]
D NYP54_06220 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D NYP54_06225 phosphomannose isomerase type II C-terminal cupin domain K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D NYP54_03690 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NYP54_08820 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D NYP54_10680 fba; fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D NYP54_08835 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D NYP54_03335 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:cys00052]
D NYP54_11180 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NYP54_08515 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NYP54_03690 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NYP54_01315 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NYP54_08270 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D NYP54_06115 mandelate racemase/muconate lactonizing enzyme family protein K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
C 00053 Ascorbate and aldarate metabolism
D NYP54_08395 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00500 Starch and sucrose metabolism [PATH:cys00500]
D NYP54_08515 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NYP54_03690 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NYP54_01315 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NYP54_08270 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D NYP54_04130 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NYP54_06220 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:cys00520]
D NYP54_03070 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D NYP54_02245 nagE; N-acetylglucosamine-specific PTS transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D NYP54_10730 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D NYP54_06220 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D NYP54_00475 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D NYP54_10725 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D NYP54_08830 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D NYP54_00470 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D NYP54_06410 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D NYP54_06340 HAD-IA family hydrolase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D NYP54_07965 phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D NYP54_00445 nucleotidyltransferase family protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D NYP54_05390 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D NYP54_05385 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D NYP54_03780 polysaccharide biosynthesis protein K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D NYP54_08280 glycosyltransferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D NYP54_01315 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NYP54_08270 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D NYP54_03690 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NYP54_08515 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NYP54_08395 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NYP54_11180 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NYP54_03335 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D NYP54_04130 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NYP54_06225 phosphomannose isomerase type II C-terminal cupin domain K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
C 00620 Pyruvate metabolism [PATH:cys00620]
D NYP54_00185 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NYP54_10695 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NYP54_02860 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D NYP54_02855 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D NYP54_02850 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NYP54_04345 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D NYP54_04350 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D NYP54_10675 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NYP54_00950 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D NYP54_07935 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D NYP54_07930 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D NYP54_10285 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D NYP54_06455 alpha-hydroxy-acid oxidizing protein K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D NYP54_11270 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D NYP54_04760 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D NYP54_04895 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D NYP54_06260 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D NYP54_10585 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NYP54_09060 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D NYP54_00500 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D NYP54_04255 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D NYP54_02475 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D NYP54_08310 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:cys00630]
D NYP54_00185 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NYP54_10695 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NYP54_10585 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NYP54_05860 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D NYP54_05250 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D NYP54_05590 catalase K03781 katE; catalase [EC:1.11.1.6]
D NYP54_02625 HAD-IA family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D NYP54_06480 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NYP54_09855 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NYP54_02825 gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D NYP54_02820 gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D NYP54_02835 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D NYP54_02850 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NYP54_02830 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
C 00640 Propanoate metabolism [PATH:cys00640]
D NYP54_00185 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NYP54_10695 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NYP54_04345 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D NYP54_04350 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D NYP54_02015 beta-ketoacyl-ACP synthase 3 K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D NYP54_02850 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NYP54_00950 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D NYP54_07935 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D NYP54_07930 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D NYP54_10285 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D NYP54_09875 aspartate aminotransferase family protein K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D NYP54_01780 enoyl-CoA hydratase-related protein K11264 scpB; methylmalonyl-CoA decarboxylase [EC:4.1.1.-]
D NYP54_07445 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D NYP54_01585 iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:cys00650]
D NYP54_09245 acyl-CoA-binding protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D NYP54_10070 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D NYP54_03605 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D NYP54_03600 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NYP54_03615 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D NYP54_03610 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D NYP54_09875 aspartate aminotransferase family protein K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D NYP54_09820 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D NYP54_09130 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NYP54_09135 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D NYP54_02090 acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
C 00660 C5-Branched dibasic acid metabolism [PATH:cys00660]
D NYP54_09130 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NYP54_09135 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D NYP54_02090 acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D NYP54_07445 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D NYP54_08315 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D NYP54_08320 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D NYP54_08340 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:cys00562]
D NYP54_11395 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D NYP54_08835 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:cys00190]
D NYP54_08850 ndhC; NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D NYP54_08855 NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D NYP54_08860 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D NYP54_08865 NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D NYP54_08870 nuoE; NADH-quinone oxidoreductase subunit NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D NYP54_08875 nuoF; NADH-quinone oxidoreductase subunit NuoF K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D NYP54_08880 nuoG; NADH-quinone oxidoreductase subunit NuoG K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D NYP54_08885 nuoH; NADH-quinone oxidoreductase subunit NuoH K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D NYP54_08890 nuoI; NADH-quinone oxidoreductase subunit NuoI K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D NYP54_08895 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D NYP54_08900 nuoK; NADH-quinone oxidoreductase subunit NuoK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D NYP54_08905 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D NYP54_08910 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D NYP54_08915 nuoN; NADH-quinone oxidoreductase subunit NuoN K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D NYP54_03605 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D NYP54_03600 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NYP54_03615 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D NYP54_03610 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D NYP54_08640 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D NYP54_08635 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D NYP54_08630 cyoC; cytochrome o ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D NYP54_08625 cyoB; cytochrome o ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D NYP54_08620 cyoA; ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D NYP54_01230 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D NYP54_06475 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D NYP54_01235 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D NYP54_06470 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D NYP54_08790 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D NYP54_08800 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D NYP54_08795 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D NYP54_08785 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D NYP54_08805 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D NYP54_08770 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D NYP54_08780 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D NYP54_08775 F0F1 ATP synthase subunit B K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D NYP54_11420 ppa; inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D NYP54_01890 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:cys00680]
D NYP54_09855 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NYP54_04255 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D NYP54_10585 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NYP54_10680 fba; fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D NYP54_08820 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D NYP54_04345 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D NYP54_04350 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D NYP54_00185 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NYP54_10695 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NYP54_05890 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D NYP54_09185 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NYP54_05550 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D NYP54_10405 HAD-IB family phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:cys00910]
D NYP54_00655 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D NYP54_06480 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NYP54_03635 can; carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism
D NYP54_03160 rhodanese-like domain-containing protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D NYP54_05870 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:cys00061]
D NYP54_00950 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D NYP54_07935 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D NYP54_07930 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D NYP54_10285 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D NYP54_06950 acyl carrier protein K02078 acpP; acyl carrier protein
D NYP54_06955 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein
D NYP54_10615 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D NYP54_10980 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D NYP54_04850 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D NYP54_05525 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D NYP54_05510 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NYP54_10610 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NYP54_05515 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NYP54_10975 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NYP54_09590 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D NYP54_06650 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D NYP54_10070 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D NYP54_09235 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:cys00071]
D NYP54_09250 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D NYP54_09245 acyl-CoA-binding protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D NYP54_09240 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D NYP54_09235 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:cys00121]
D NYP54_04725 linear amide C-N hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:cys00561]
D NYP54_07035 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D NYP54_04845 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D NYP54_11315 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D NYP54_08510 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 00564 Glycerophospholipid metabolism [PATH:cys00564]
D NYP54_10570 NAD(P)-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D NYP54_09715 glpD; glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D NYP54_11315 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D NYP54_08510 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D NYP54_11135 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D NYP54_02800 phosphatidylcholine synthase K01004 pcs; phosphatidylcholine synthase [EC:2.7.8.24]
D NYP54_04865 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D NYP54_01740 asd; archaetidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D NYP54_09795 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D NYP54_10370 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:cys00592]
D NYP54_09250 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:cys01040]
D NYP54_01310 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:cys00230]
D NYP54_00450 nudE; ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D NYP54_03090 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D NYP54_03690 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NYP54_04080 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D NYP54_10795 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D NYP54_04820 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D NYP54_09100 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D NYP54_03665 purT; formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D NYP54_03675 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D NYP54_09105 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D NYP54_03655 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D NYP54_07525 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D NYP54_02950 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D NYP54_01180 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D NYP54_10220 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D NYP54_03215 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D NYP54_03060 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D NYP54_01120 hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D NYP54_02690 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D NYP54_08920 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D NYP54_03965 XTP/dITP diphosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D NYP54_00740 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D NYP54_08520 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D NYP54_00155 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NYP54_04425 nrdA; ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NYP54_04430 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D NYP54_00865 dgt; dNTP triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D NYP54_06695 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D NYP54_01265 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D NYP54_10025 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D NYP54_05580 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D NYP54_00265 adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2]
D NYP54_02905 add; adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2]
D NYP54_03205 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D NYP54_04755 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D NYP54_07945 symmetrical bis(5'-nucleosyl)-tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
C 00240 Pyrimidine metabolism [PATH:cys00240]
D NYP54_04635 carB; carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D NYP54_09785 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D NYP54_01600 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D NYP54_03290 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D NYP54_03285 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D NYP54_01255 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D NYP54_11120 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D NYP54_08920 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D NYP54_04755 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D NYP54_10350 Maf family protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D NYP54_04575 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D NYP54_09825 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D NYP54_07500 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D NYP54_08345 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D NYP54_05455 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D NYP54_00155 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NYP54_04425 nrdA; ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NYP54_04430 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D NYP54_03080 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D NYP54_09790 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D NYP54_09565 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D NYP54_09190 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D NYP54_03385 SDR family NAD(P)-dependent oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:cys00250]
D NYP54_01800 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_09720 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_10400 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D NYP54_03640 ansA; asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D NYP54_02095 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D NYP54_06135 amidohydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3]
D NYP54_11085 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D NYP54_04615 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D NYP54_04580 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D NYP54_05580 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D NYP54_01180 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D NYP54_01600 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D NYP54_09875 aspartate aminotransferase family protein K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D NYP54_09820 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D NYP54_00655 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D NYP54_10375 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D NYP54_06480 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NYP54_04635 carB; carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D NYP54_09785 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D NYP54_08130 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D NYP54_00475 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D NYP54_10725 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D NYP54_10795 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:cys00260]
D NYP54_05760 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NYP54_11200 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D NYP54_10705 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NYP54_11210 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D NYP54_09140 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D NYP54_11215 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D NYP54_09855 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NYP54_05890 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D NYP54_09185 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NYP54_05550 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D NYP54_10405 HAD-IB family phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D NYP54_03385 SDR family NAD(P)-dependent oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D NYP54_03405 glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D NYP54_03400 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D NYP54_02825 gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D NYP54_02820 gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D NYP54_02835 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D NYP54_02850 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NYP54_02830 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D NYP54_04865 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D NYP54_01735 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D NYP54_00765 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D NYP54_00760 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:cys00270]
D NYP54_03870 PLP-dependent aspartate aminotransferase family protein K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D NYP54_06090 PLP-dependent aspartate aminotransferase family protein K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D NYP54_03885 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D NYP54_04675 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D NYP54_02455 5'-methylthioadenosine/adenosylhomocysteine nucleosidase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D NYP54_08295 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D NYP54_05485 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D NYP54_05760 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NYP54_11200 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D NYP54_10705 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NYP54_08055 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D NYP54_08305 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NYP54_02035 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D NYP54_01245 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D NYP54_03180 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D NYP54_01800 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_09720 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_03160 rhodanese-like domain-containing protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D NYP54_05870 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D NYP54_10585 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NYP54_01735 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D NYP54_09185 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NYP54_05550 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:cys00280]
D NYP54_08305 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NYP54_02015 beta-ketoacyl-ACP synthase 3 K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D NYP54_02850 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NYP54_09240 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D NYP54_09250 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D NYP54_09875 aspartate aminotransferase family protein K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:cys00290]
D NYP54_08315 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D NYP54_08320 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D NYP54_08340 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D NYP54_09130 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NYP54_09135 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D NYP54_07535 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D NYP54_09145 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D NYP54_08305 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NYP54_08310 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:cys00300]
D NYP54_05760 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NYP54_11200 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D NYP54_10705 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NYP54_05750 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D NYP54_05755 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D NYP54_05745 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D NYP54_04605 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D NYP54_05505 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D NYP54_05740 PLP-dependent decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D NYP54_10170 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D NYP54_10175 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:cys00310]
D NYP54_09885 aldehyde dehydrogenase family protein K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase
D NYP54_03585 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D NYP54_02850 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NYP54_09875 aspartate aminotransferase family protein K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D NYP54_09820 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00220 Arginine biosynthesis [PATH:cys00220]
D NYP54_04615 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D NYP54_04580 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D NYP54_06900 arginase K01476 rocF; arginase [EC:3.5.3.1]
D NYP54_08130 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D NYP54_06480 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NYP54_00655 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D NYP54_01800 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_09720 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_04590 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D NYP54_04610 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D NYP54_04605 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D NYP54_04585 M20/M25/M40 family metallo-hydrolase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:cys00330]
D NYP54_01095 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D NYP54_01140 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D NYP54_06900 arginase K01476 rocF; arginase [EC:3.5.3.1]
D NYP54_09490 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D NYP54_10375 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D NYP54_06905 ornithine cyclodeaminase K01750 E4.3.1.12; ornithine cyclodeaminase [EC:4.3.1.12]
D NYP54_01935 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D NYP54_01930 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D NYP54_01800 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_09720 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:cys00340]
D NYP54_03040 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D NYP54_02995 hisIE; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D NYP54_03005 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D NYP54_03020 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D NYP54_03000 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D NYP54_03025 hisB; bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D NYP54_03030 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NYP54_03035 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D NYP54_01880 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D NYP54_01875 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D NYP54_01885 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D NYP54_01870 hutG; formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8]
C 00350 Tyrosine metabolism [PATH:cys00350]
D NYP54_01800 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_09720 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_03030 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NYP54_00360 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D NYP54_00370 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D NYP54_00365 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D NYP54_00375 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D NYP54_09820 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:cys00360]
D NYP54_00380 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D NYP54_01800 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_09720 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_03030 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NYP54_00360 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
C 00380 Tryptophan metabolism [PATH:cys00380]
D NYP54_03585 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D NYP54_02850 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NYP54_05590 catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:cys00400]
D NYP54_10165 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D NYP54_09940 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D NYP54_07940 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D NYP54_06895 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D NYP54_09935 aroK; shikimate kinase AroK K00891 aroK; shikimate kinase [EC:2.7.1.71]
D NYP54_10535 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D NYP54_07865 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D NYP54_03305 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D NYP54_01070 anthranilate synthase component I K13503 trpEG; anthranilate synthase [EC:4.1.3.27]
D NYP54_10530 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D NYP54_06855 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D NYP54_05770 trpC; indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D NYP54_00765 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D NYP54_00760 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D NYP54_10575 tyrA; bifunctional chorismate mutase/prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D NYP54_07490 transporter substrate-binding domain-containing protein K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91]
D NYP54_00275 pheA; prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D NYP54_01800 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_09720 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_03030 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NYP54_00380 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:cys00410]
D NYP54_06195 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D NYP54_09875 aspartate aminotransferase family protein K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D NYP54_06190 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:cys00430]
D NYP54_11085 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D NYP54_00655 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D NYP54_04350 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D NYP54_04345 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:cys00450]
D NYP54_03870 PLP-dependent aspartate aminotransferase family protein K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D NYP54_06090 PLP-dependent aspartate aminotransferase family protein K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D NYP54_03885 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D NYP54_11250 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D NYP54_10030 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D NYP54_09840 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:cys00460]
D NYP54_03640 ansA; asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D NYP54_02095 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D NYP54_09855 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:cys00470]
D NYP54_03310 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D NYP54_09400 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NYP54_08130 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D NYP54_10150 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D NYP54_05505 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D NYP54_05740 PLP-dependent decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:cys00480]
D NYP54_02035 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D NYP54_01245 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D NYP54_03180 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D NYP54_04285 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D NYP54_09165 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D NYP54_09285 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D NYP54_06930 pepD; beta-Ala-His dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D NYP54_01155 gorA; glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D NYP54_05635 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D NYP54_09175 gnd; decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D NYP54_04140 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D NYP54_01080 glutathione peroxidase K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:cys00540]
D NYP54_09585 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D NYP54_08255 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D NYP54_09595 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D NYP54_01645 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D NYP54_09580 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D NYP54_04370 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D NYP54_06625 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D NYP54_10625 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D NYP54_00240 HAD-IIIA family hydrolase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D NYP54_06555 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D NYP54_01900 waaA; lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D NYP54_05680 LPS biosynthesis protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D NYP54_06270 lysophospholipid acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D NYP54_00660 hldE; bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D NYP54_08505 gmhB; D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D NYP54_01895 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D NYP54_03895 waaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D NYP54_01215 waaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:cys00541]
D NYP54_08515 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NYP54_11180 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NYP54_08395 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NYP54_03800 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D NYP54_03795 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D NYP54_06225 phosphomannose isomerase type II C-terminal cupin domain K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D NYP54_00470 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D NYP54_03780 polysaccharide biosynthesis protein K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D NYP54_03775 NAD-dependent epimerase/dehydratase family protein K19068 wbjC; UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase [EC:1.1.1.367]
D NYP54_03770 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K24258 wbjD; UDP-N-acetyl-L-fucosamine synthase [EC:5.1.3.28]
C 00550 Peptidoglycan biosynthesis [PATH:cys00550]
D NYP54_05390 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D NYP54_05385 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D NYP54_07675 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D NYP54_10150 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D NYP54_10170 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D NYP54_09400 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NYP54_10175 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D NYP54_11130 uppS; polyprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D NYP54_10145 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D NYP54_04815 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D NYP54_11080 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NYP54_11365 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NYP54_01925 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D NYP54_10255 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D NYP54_03685 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D NYP54_10645 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D NYP54_01615 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00552 Teichoic acid biosynthesis
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:cys00730]
D NYP54_07460 thiC; phosphomethylpyrimidine synthase ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D NYP54_07485 thiE; thiamine phosphate synthase K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
D NYP54_09540 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NYP54_07465 FAD-dependent oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19]
D NYP54_01830 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D NYP54_07475 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D NYP54_03580 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D NYP54_07590 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D NYP54_03205 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:cys00740]
D NYP54_01425 ribA; GTP cyclohydrolase II RibA K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D NYP54_04560 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D NYP54_01435 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D NYP54_04570 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D NYP54_04555 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D NYP54_04565 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D NYP54_04525 ribF; bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D NYP54_05040 aphA; acid phosphatase AphA K03788 aphA; acid phosphatase (class B) [EC:3.1.3.2]
D NYP54_02805 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:cys00750]
D NYP54_05550 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D NYP54_09140 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D NYP54_11215 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D NYP54_02685 pdxS; pyridoxal 5'-phosphate synthase lyase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D NYP54_02680 pdxT; pyridoxal 5'-phosphate synthase glutaminase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:cys00760]
D NYP54_10400 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D NYP54_02180 nadA; quinolinate synthase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D NYP54_02175 nadC; carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D NYP54_03060 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D NYP54_03860 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase K13522 K13522; bifunctional NMN adenylyltransferase/nudix hydrolase [EC:2.7.7.1 3.6.1.-]
D NYP54_04755 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D NYP54_02250 NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D NYP54_00150 NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D NYP54_03135 sthA; Si-specific NAD(P)(+) transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D NYP54_09820 aldehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:cys00770]
D NYP54_09130 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NYP54_09135 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D NYP54_07535 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D NYP54_09145 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D NYP54_06185 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D NYP54_05355 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D NYP54_06180 DUF2520 domain-containing protein K24263 panG; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D NYP54_06190 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D NYP54_01630 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D NYP54_04185 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D NYP54_04755 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D NYP54_09430 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D NYP54_01605 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D NYP54_08305 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NYP54_06195 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:cys00780]
D NYP54_00790 methyltransferase domain-containing protein K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D NYP54_05525 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D NYP54_05510 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NYP54_10610 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NYP54_05515 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NYP54_10975 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NYP54_09590 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D NYP54_06650 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D NYP54_00780 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D NYP54_00770 bioA; adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D NYP54_00795 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D NYP54_00775 bioB; biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6]
D NYP54_02845 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:cys00785]
D NYP54_03975 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D NYP54_00460 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D NYP54_04070 lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D NYP54_02850 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NYP54_02860 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D NYP54_02855 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D NYP54_03595 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D NYP54_03585 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D NYP54_02015 beta-ketoacyl-ACP synthase 3 K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D NYP54_02825 gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D NYP54_02820 gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D NYP54_02835 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D NYP54_02830 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:cys00790]
D NYP54_01625 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D NYP54_10650 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D NYP54_10655 folP; dihydropteroate synthase K13941 folKP; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase [EC:2.7.6.3 2.5.1.15]
D NYP54_05025 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D NYP54_10280 Mur ligase family protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D NYP54_01425 ribA; GTP cyclohydrolase II RibA K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D NYP54_04560 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D NYP54_03300 pabB; aminodeoxychorismate synthase component I K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D NYP54_00385 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D NYP54_00380 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D NYP54_00625 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D NYP54_00635 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D NYP54_02720 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
C 00670 One carbon pool by folate [PATH:cys00670]
D NYP54_05025 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D NYP54_10820 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D NYP54_09855 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NYP54_09100 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D NYP54_10220 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D NYP54_01060 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D NYP54_02835 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D NYP54_03885 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D NYP54_09190 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D NYP54_06095 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D NYP54_00135 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:cys00860]
D NYP54_08690 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NYP54_06980 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D NYP54_03175 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D NYP54_11190 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D NYP54_07660 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D NYP54_04775 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D NYP54_06265 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D NYP54_09210 hemF; oxygen-dependent coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D NYP54_00560 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D NYP54_08640 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D NYP54_01565 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D NYP54_02075 DUF2470 domain-containing protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D NYP54_10720 ferritin-like domain-containing protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:cys00130]
D NYP54_00350 chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D NYP54_00345 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D NYP54_02795 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D NYP54_02805 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D NYP54_10970 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D NYP54_06345 ubiG; bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D NYP54_10965 FAD-dependent monooxygenase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D NYP54_07770 ubiE; bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D NYP54_09230 coq7; 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D NYP54_00090 hotdog fold thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D NYP54_02455 5'-methylthioadenosine/adenosylhomocysteine nucleosidase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D NYP54_00915 wrbA; NAD(P)H:quinone oxidoreductase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D NYP54_01465 flavodoxin family protein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D NYP54_00360 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:cys00900]
D NYP54_01830 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D NYP54_06515 ispC; 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D NYP54_00615 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D NYP54_05370 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D NYP54_06675 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D NYP54_00310 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D NYP54_04870 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D NYP54_02805 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D NYP54_01905 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D NYP54_09765 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D NYP54_11130 uppS; polyprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:cys00907]
D NYP54_09250 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
D NYP54_07345 amino acid adenylation domain-containing protein K16416 mxaA; myxalamid-type nonribosomal peptide synthetase MxaA
D NYP54_11515 amino acid adenylation domain-containing protein K16416 mxaA; myxalamid-type nonribosomal peptide synthetase MxaA
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D NYP54_10660 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:cys00523]
D NYP54_03800 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D NYP54_03795 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D NYP54_03795 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D NYP54_00340 linear amide C-N hydrolase K24041 yxeI; penicillin V amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis [PATH:cys00332]
D NYP54_01935 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D NYP54_01930 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:cys00261]
D NYP54_05760 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NYP54_11200 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D NYP54_10705 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NYP54_05750 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D NYP54_05755 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:cys00521]
D NYP54_01315 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NYP54_08270 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D NYP54_03690 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NYP54_11395 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D NYP54_03800 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D NYP54_03795 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D NYP54_01315 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NYP54_08270 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:cys00525]
D NYP54_03800 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D NYP54_03795 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:cys00401]
D NYP54_10575 tyrA; bifunctional chorismate mutase/prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D NYP54_01800 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_09720 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_03030 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D NYP54_03305 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D NYP54_10980 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D NYP54_05515 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NYP54_10975 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NYP54_06650 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D NYP54_06950 acyl carrier protein K02078 acpP; acyl carrier protein
D NYP54_06955 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein
D NYP54_10615 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:cys00999]
D NYP54_04675 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D NYP54_06895 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:cys00362]
D NYP54_09250 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D NYP54_09245 acyl-CoA-binding protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
C 00627 Aminobenzoate degradation
D NYP54_02805 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
D NYP54_09250 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:cys00643]
D NYP54_00370 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D NYP54_00365 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D NYP54_00375 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:cys03020]
D NYP54_05780 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D NYP54_05775 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D NYP54_02975 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NYP54_05915 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NYP54_04660 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:cys03010]
D NYP54_00980 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D NYP54_11110 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D NYP54_06010 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D NYP54_05920 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D NYP54_05955 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D NYP54_04650 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D NYP54_05570 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D NYP54_05970 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D NYP54_06160 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D NYP54_05560 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D NYP54_05925 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D NYP54_05575 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D NYP54_05930 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D NYP54_05975 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D NYP54_03200 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D NYP54_01725 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D NYP54_05995 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D NYP54_04645 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D NYP54_06020 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D NYP54_09600 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D NYP54_07785 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D NYP54_05795 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D NYP54_06025 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D NYP54_06040 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D NYP54_06035 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D NYP54_05980 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D NYP54_05965 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D NYP54_05785 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D NYP54_04640 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D NYP54_05790 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D NYP54_05800 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D NYP54_06155 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D NYP54_05990 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D NYP54_05945 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D NYP54_06005 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D NYP54_05910 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D NYP54_05960 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D NYP54_01710 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D NYP54_03725 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D NYP54_10425 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D NYP54_06015 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D NYP54_06030 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D NYP54_05985 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D NYP54_04085 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D NYP54_10430 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D NYP54_06140 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D NYP54_06000 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D NYP54_05950 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D NYP54_10360 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D NYP54_04840 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D NYP54_06145 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D NYP54_05450 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D NYP54_03730 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D NYP54_05935 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
C 00970 Aminoacyl-tRNA biosynthesis [PATH:cys00970]
D NYP54_09515 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NYP54_04215 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NYP54_05145 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D NYP54_05905 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D NYP54_07840 tRNA-Met K14230 tRNA-Met; tRNA Met
D NYP54_05015 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D NYP54_05835 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D NYP54_08690 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NYP54_06360 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D NYP54_06365 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D NYP54_06355 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D NYP54_02480 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NYP54_04150 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NYP54_08155 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NYP54_08965 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D NYP54_08970 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D NYP54_02195 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D NYP54_03740 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NYP54_05885 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NYP54_07855 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NYP54_09840 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NYP54_01060 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D NYP54_02735 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D NYP54_02895 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NYP54_04530 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D NYP54_07415 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D NYP54_05465 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NYP54_06620 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D NYP54_06530 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NYP54_11275 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D NYP54_11280 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NYP54_11370 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NYP54_10290 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:cys03060]
D NYP54_05940 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D NYP54_05810 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D NYP54_08840 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D NYP54_05235 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D NYP54_05230 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D NYP54_05240 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D NYP54_05435 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NYP54_02615 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NYP54_00145 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NYP54_03170 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NYP54_09980 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D NYP54_04855 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D NYP54_05160 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D NYP54_04535 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:cys04122]
D NYP54_09540 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NYP54_03160 rhodanese-like domain-containing protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D NYP54_05870 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D NYP54_06565 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D NYP54_00970 TusE/DsrC/DsvC family sulfur relay protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D NYP54_04680 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D NYP54_00875 HesA/MoeB/ThiF family protein K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D NYP54_07470 thiS; sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:cys03018]
D NYP54_06485 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D NYP54_09990 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D NYP54_03195 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D NYP54_08365 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D NYP54_05175 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D NYP54_00355 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D NYP54_02030 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D NYP54_10050 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D NYP54_10135 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NYP54_04115 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D NYP54_01890 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:cys03030]
D NYP54_04060 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NYP54_07970 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NYP54_00485 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NYP54_00540 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NYP54_11305 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NYP54_03620 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NYP54_06910 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NYP54_11235 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D NYP54_11805 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D NYP54_07795 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D NYP54_07065 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYP54_11645 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYP54_03645 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D NYP54_11405 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D NYP54_09265 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NYP54_03660 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:cys03410]
D NYP54_11145 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D NYP54_01370 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D NYP54_03210 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D NYP54_11310 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D NYP54_00050 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D NYP54_07720 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D NYP54_09265 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NYP54_00285 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NYP54_03660 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:cys03420]
D NYP54_02190 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D NYP54_07625 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D NYP54_06635 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D NYP54_02930 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D NYP54_01105 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D NYP54_04240 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D NYP54_09265 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NYP54_03660 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:cys03430]
D NYP54_03900 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D NYP54_04180 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D NYP54_01105 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D NYP54_04240 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D NYP54_00935 exonuclease domain-containing protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D NYP54_05055 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D NYP54_00285 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NYP54_07065 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYP54_11645 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYP54_07970 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NYP54_06910 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NYP54_00485 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NYP54_11305 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NYP54_00540 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NYP54_04060 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NYP54_03620 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NYP54_03660 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:cys03440]
D NYP54_00285 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NYP54_07065 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYP54_11645 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYP54_00870 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D NYP54_09550 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D NYP54_04035 recR; recombination mediator RecR K06187 recR; recombination protein RecR
D NYP54_07810 recA; recombinase RecA K03553 recA; recombination protein RecA
D NYP54_09265 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NYP54_00040 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D NYP54_02660 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D NYP54_00035 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D NYP54_02925 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D NYP54_07970 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NYP54_06910 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NYP54_00485 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NYP54_11305 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NYP54_00540 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NYP54_04060 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NYP54_03620 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NYP54_02470 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:cys02010]
D NYP54_09860 polyamine ABC transporter substrate-binding protein K11073 potF; putrescine transport system substrate-binding protein
D NYP54_09465 ABC transporter permease subunit K11074 potI; putrescine transport system permease protein
D NYP54_09470 ABC transporter permease subunit K11075 potH; putrescine transport system permease protein
D NYP54_09475 potA; polyamine ABC transporter ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D NYP54_01010 ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein
D NYP54_00410 MlaD family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NYP54_01015 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NYP54_00420 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NYP54_01020 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NYP54_01005 STAS domain-containing protein K07122 mlaB; phospholipid transport system transporter-binding protein
D NYP54_00415 ATP-binding cassette domain-containing protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NYP54_01025 ATP-binding cassette domain-containing protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NYP54_00600 rbsB; ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D NYP54_00595 rbsC; ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein
D NYP54_00590 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D NYP54_01520 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D NYP54_01535 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D NYP54_01530 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D NYP54_01525 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D NYP54_10300 MetQ/NlpA family ABC transporter substrate-binding protein K02072 metI; D-methionine transport system permease protein
D NYP54_10305 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D NYP54_02590 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D NYP54_02585 ABC transporter permease subunit K15581 oppB; oligopeptide transport system permease protein
D NYP54_02580 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D NYP54_02575 ATP-binding cassette domain-containing protein K15583 oppD; oligopeptide transport system ATP-binding protein
D NYP54_02570 dipeptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D NYP54_00510 ABC transporter substrate-binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D NYP54_05035 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein
D NYP54_05030 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D NYP54_11165 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D NYP54_11160 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D NYP54_11065 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D NYP54_04375 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D NYP54_11320 type I secretion system permease/ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D NYP54_00220 cydC; cysteine/glutathione ABC transporter ATP-binding protein/permease CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D NYP54_00215 cydD; thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D NYP54_06720 ATP-binding cassette domain-containing protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:cys02060]
D NYP54_03330 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D NYP54_02245 nagE; N-acetylglucosamine-specific PTS transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D NYP54_03335 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D NYP54_02240 ptsP; phosphoenolpyruvate--protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
D NYP54_06490 ptsP; phosphoenolpyruvate--protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D NYP54_03350 PTS sugar transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:cys03070]
D NYP54_04790 TolC family outer membrane protein K12340 tolC; outer membrane protein
D NYP54_06710 TolC family protein K12340 tolC; outer membrane protein
D NYP54_11325 HlyD family type I secretion periplasmic adaptor subunit K11003 hlyD; membrane fusion protein, hemolysin D
D NYP54_11320 type I secretion system permease/ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D NYP54_05235 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D NYP54_05230 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D NYP54_05810 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D NYP54_08840 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D NYP54_05940 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D NYP54_05240 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D NYP54_05435 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NYP54_02615 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NYP54_04855 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D NYP54_00145 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NYP54_03170 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NYP54_09980 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:cys02020]
D NYP54_06200 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D NYP54_06205 response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D NYP54_01520 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D NYP54_06440 response regulator transcription factor K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D NYP54_07405 response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D NYP54_10955 HAMP domain-containing histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D NYP54_10950 response regulator transcription factor K07661 rstA; two-component system, OmpR family, response regulator RstA
D NYP54_01350 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D NYP54_01345 efflux RND transporter permease subunit K07787 cusA; copper/silver efflux system protein
D NYP54_05845 ATP-binding protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D NYP54_10065 response regulator transcription factor K07666 qseB; two-component system, OmpR family, response regulator QseB
D NYP54_08225 ATP-binding protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D NYP54_08230 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D NYP54_08210 kdpA; potassium-transporting ATPase subunit KdpA K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D NYP54_08215 kdpB; potassium-transporting ATPase subunit KdpB K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D NYP54_08220 kdpC; potassium-transporting ATPase subunit KdpC K01548 kdpC; potassium-transporting ATPase KdpC subunit
D NYP54_06915 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D NYP54_07070 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D NYP54_01615 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D NYP54_04895 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D NYP54_06260 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D NYP54_01805 ATP-binding protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D NYP54_02935 uvrY; UvrY/SirA/GacA family response regulator transcription factor K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D NYP54_06700 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D NYP54_06645 HD domain-containing protein K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D NYP54_06285 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1
D NYP54_06480 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NYP54_08130 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2]
D NYP54_01230 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D NYP54_06475 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D NYP54_01235 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D NYP54_06470 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D NYP54_04790 TolC family outer membrane protein K12340 tolC; outer membrane protein
D NYP54_06710 TolC family protein K12340 tolC; outer membrane protein
D NYP54_00580 low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D NYP54_06900 arginase K01476 rocF; arginase [EC:3.5.3.1]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:cys02024]
D NYP54_04115 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D NYP54_03305 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D NYP54_10165 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D NYP54_05845 ATP-binding protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D NYP54_10065 response regulator transcription factor K07666 qseB; two-component system, OmpR family, response regulator QseB
D NYP54_08230 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D NYP54_04030 APC family permease K20265 gadC; glutamate:GABA antiporter
D NYP54_06445 APC family permease K20265 gadC; glutamate:GABA antiporter
D NYP54_08025 trbB; P-type conjugative transfer ATPase TrbB K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8]
D NYP54_07975 TrbC/VirB2 family protein K20528 trbC; type IV secretion system protein TrbC
D NYP54_07980 VirB3 family type IV secretion system protein K20529 trbD; type IV secretion system protein TrbD
D NYP54_07985 trbE; conjugal transfer protein TrbE K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8]
D NYP54_07990 hypothetical protein K20531 trbF; type IV secretion system protein TrbF
D NYP54_07995 type IV secretion system protein K20531 trbF; type IV secretion system protein TrbF
D NYP54_08000 TrbG/VirB9 family P-type conjugative transfer protein K20532 trbG; type IV secretion system protein TrbG
D NYP54_08005 conjugal transfer protein TrbI K20533 trbI; type IV secretion system protein TrbI
D NYP54_09235 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NYP54_11090 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D NYP54_04445 class I SAM-dependent methyltransferase K20331 toxA; toxoflavin synthase [EC:2.1.1.349]
D NYP54_01425 ribA; GTP cyclohydrolase II RibA K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D NYP54_01430 hypothetical protein K20332 toxC; toxoflavin biosynthesis protein ToxC
D NYP54_01440 formylglycine-generating enzyme family protein K20333 toxD; toxoflavin biosynthesis protein ToxD
D NYP54_01435 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D NYP54_04570 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D NYP54_02590 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D NYP54_02585 ABC transporter permease subunit K15581 oppB; oligopeptide transport system permease protein
D NYP54_02580 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D NYP54_02575 ATP-binding cassette domain-containing protein K15583 oppD; oligopeptide transport system ATP-binding protein
D NYP54_02570 dipeptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D NYP54_05435 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NYP54_05810 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D NYP54_08840 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D NYP54_05940 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D NYP54_05240 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D NYP54_02615 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NYP54_04855 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D NYP54_00145 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NYP54_03170 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NYP54_09980 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:cys02030]
D NYP54_00600 rbsB; ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D NYP54_02425 FliM/FliN family flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
C 02040 Flagellar assembly [PATH:cys02040]
D NYP54_02370 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D NYP54_02380 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D NYP54_02395 FliI/YscN family ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D NYP54_02425 FliM/FliN family flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D NYP54_02435 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D NYP54_02315 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D NYP54_02320 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D NYP54_02330 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D NYP54_02325 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K02401 flhB; flagellar biosynthesis protein FlhB
D NYP54_02360 flagellar basal body protein K02387 flgB; flagellar basal-body rod protein FlgB
D NYP54_02365 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D NYP54_02410 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D NYP54_02415 flgF; flagellar basal-body rod protein FlgF K02390 flgE; flagellar hook protein FlgE
D NYP54_02335 flagellar hook basal-body protein K02391 flgF; flagellar basal-body rod protein FlgF
D NYP54_02340 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D NYP54_02350 flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D NYP54_02355 flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D NYP54_07800 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:cys04980]
D NYP54_01565 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D NYP54_03885 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:cys01501]
D NYP54_06405 MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D NYP54_03070 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D NYP54_02590 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D NYP54_02585 ABC transporter permease subunit K15581 oppB; oligopeptide transport system permease protein
D NYP54_02580 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D NYP54_02575 ATP-binding cassette domain-containing protein K15583 oppD; oligopeptide transport system ATP-binding protein
D NYP54_02570 dipeptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D NYP54_03955 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYP54_10825 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYP54_03960 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D NYP54_04790 TolC family outer membrane protein K12340 tolC; outer membrane protein
D NYP54_06710 TolC family protein K12340 tolC; outer membrane protein
D NYP54_11080 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NYP54_11365 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:cys01502]
D NYP54_07070 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D NYP54_09400 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NYP54_03310 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D NYP54_10175 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D NYP54_10145 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D NYP54_04815 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D NYP54_01615 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:cys01503]
D NYP54_08280 glycosyltransferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D NYP54_03955 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYP54_10825 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYP54_03960 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D NYP54_04790 TolC family outer membrane protein K12340 tolC; outer membrane protein
D NYP54_06710 TolC family protein K12340 tolC; outer membrane protein
D NYP54_09585 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:cys01000]
C 01001 Protein kinases [BR:cys01001]
D NYP54_11025 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D NYP54_06200 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D NYP54_10955 HAMP domain-containing histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D NYP54_05845 ATP-binding protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D NYP54_08225 ATP-binding protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D NYP54_01805 ATP-binding protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:cys01009]
D NYP54_07745 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D NYP54_10405 HAD-IB family phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:cys01002]
D NYP54_04535 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D NYP54_07455 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D NYP54_04355 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D NYP54_00740 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D NYP54_10795 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D NYP54_00475 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D NYP54_10725 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D NYP54_00340 linear amide C-N hydrolase K24041 yxeI; penicillin V amidase [EC:3.5.1.11]
D NYP54_04725 linear amide C-N hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
D NYP54_06580 M3 family metallopeptidase K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D NYP54_08535 M4 family metallopeptidase K08604 hap; vibriolysin [EC:3.4.24.25]
D NYP54_01615 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D NYP54_07070 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D NYP54_04285 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D NYP54_09165 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D NYP54_09285 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D NYP54_06930 pepD; beta-Ala-His dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D NYP54_08490 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D NYP54_01110 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D NYP54_06765 carboxypeptidase M32 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D NYP54_07735 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D NYP54_07645 htpX; zinc metalloprotease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D NYP54_00675 biotin/lipoyl-binding protein K16922 yydH; putative peptide zinc metalloprotease protein
D NYP54_01925 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D NYP54_10255 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D NYP54_03685 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D NYP54_10645 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D NYP54_10090 clpP; ATP-dependent Clp endopeptidase proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D NYP54_10100 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D NYP54_05045 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D NYP54_05160 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D NYP54_10960 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D NYP54_08160 S49 family peptidase K04773 sppA; protease IV [EC:3.4.21.-]
D NYP54_00535 sohB; protease SohB K04774 sohB; serine protease SohB [EC:3.4.21.-]
D NYP54_02100 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6]
D NYP54_06230 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D NYP54_02095 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D NYP54_09455 metallopeptidase TldD-related protein K03592 pmbA; PmbA protein
D NYP54_00555 tldD; metalloprotease TldD K03568 tldD; TldD protein
D NYP54_04100 hflC; protease modulator HflC K04087 hflC; modulator of FtsH protease HflC
D NYP54_04105 hflK; FtsH protease activity modulator HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases
C 01005 Lipopolysaccharide biosynthesis proteins [BR:cys01005]
D NYP54_09585 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D NYP54_09580 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D NYP54_08255 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D NYP54_09595 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D NYP54_01645 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D NYP54_04370 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D NYP54_05680 LPS biosynthesis protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D NYP54_06270 lysophospholipid acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D NYP54_01900 waaA; lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D NYP54_10625 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D NYP54_06555 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D NYP54_00240 HAD-IIIA family hydrolase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D NYP54_06625 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D NYP54_03895 waaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D NYP54_01215 waaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D NYP54_08505 gmhB; D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D NYP54_00660 hldE; bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D NYP54_01895 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:cys01011]
D NYP54_05390 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D NYP54_05385 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D NYP54_07675 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D NYP54_10150 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D NYP54_10170 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D NYP54_09400 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NYP54_03310 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D NYP54_10145 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D NYP54_04815 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D NYP54_08950 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D NYP54_11080 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NYP54_11365 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NYP54_01925 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D NYP54_10255 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D NYP54_03685 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D NYP54_10645 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D NYP54_07070 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D NYP54_01615 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D NYP54_02230 lytic transglycosylase domain-containing protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D NYP54_09460 MltA domain-containing protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D NYP54_00940 ampD; 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:cys01004]
D NYP54_10980 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D NYP54_04850 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D NYP54_05525 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D NYP54_05510 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NYP54_10610 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NYP54_05515 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NYP54_10975 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NYP54_09590 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D NYP54_06650 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D NYP54_10070 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D NYP54_01310 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D NYP54_00185 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NYP54_10695 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NYP54_09235 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NYP54_04845 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D NYP54_11315 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D NYP54_08510 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:cys01008]
D NYP54_07345 amino acid adenylation domain-containing protein K16416 mxaA; myxalamid-type nonribosomal peptide synthetase MxaA
D NYP54_11515 amino acid adenylation domain-containing protein K16416 mxaA; myxalamid-type nonribosomal peptide synthetase MxaA
C 01006 Prenyltransferases [BR:cys01006]
D NYP54_01905 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D NYP54_09765 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D NYP54_11130 uppS; polyprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D NYP54_10120 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D NYP54_00345 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D NYP54_08640 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:cys01007]
D NYP54_08690 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NYP54_02480 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NYP54_11370 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NYP54_10290 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D NYP54_07855 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NYP54_05465 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NYP54_09840 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NYP54_04530 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D NYP54_02735 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D NYP54_02895 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NYP54_07415 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D NYP54_08155 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NYP54_08965 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D NYP54_06530 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NYP54_08970 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D NYP54_02195 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D NYP54_05885 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NYP54_06620 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D NYP54_03740 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NYP54_04150 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NYP54_11275 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D NYP54_11280 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NYP54_01800 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_09720 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NYP54_06130 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D NYP54_03030 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NYP54_03405 glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D NYP54_00780 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D NYP54_04605 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D NYP54_09875 aspartate aminotransferase family protein K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D NYP54_00770 bioA; adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D NYP54_03175 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D NYP54_08305 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NYP54_03300 pabB; aminodeoxychorismate synthase component I K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D NYP54_05550 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:cys00194]
D NYP54_08805 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D NYP54_08800 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D NYP54_08795 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D NYP54_08790 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D NYP54_08785 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D NYP54_08780 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D NYP54_08775 F0F1 ATP synthase subunit B K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D NYP54_08770 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:cys03000]
D NYP54_05485 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D NYP54_10415 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D NYP54_06795 LysR substrate-binding domain-containing protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D NYP54_03155 LysR substrate-binding domain-containing protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D NYP54_01360 heavy metal-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D NYP54_02790 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D NYP54_11090 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D NYP54_01225 helix-turn-helix domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D NYP54_00745 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D NYP54_02845 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D NYP54_02610 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NYP54_02630 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NYP54_04805 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D NYP54_09160 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D NYP54_09380 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D NYP54_00925 helix-turn-helix domain-containing protein K07726 K07726; putative transcriptional regulator
D NYP54_09125 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D NYP54_10375 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D NYP54_08955 DUF6290 family protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D NYP54_00130 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D NYP54_01330 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NYP54_06460 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C 03021 Transcription machinery [BR:cys03021]
D NYP54_02975 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NYP54_05915 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NYP54_05780 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D NYP54_05775 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D NYP54_04660 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D NYP54_07800 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D NYP54_05850 sigma-70 family RNA polymerase sigma factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D NYP54_09505 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D NYP54_05410 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D NYP54_06775 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D NYP54_05805 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D NYP54_00530 glutathione S-transferase N-terminal domain-containing protein K03599 sspA; stringent starvation protein A
D NYP54_06165 glutathione S-transferase N-terminal domain-containing protein K03599 sspA; stringent starvation protein A
D NYP54_06170 ClpXP protease specificity-enhancing factor SspB K03600 sspB; stringent starvation protein B
D NYP54_06460 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D NYP54_01920 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D NYP54_02030 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:cys03019]
D NYP54_09990 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D NYP54_09960 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D NYP54_05165 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D NYP54_05175 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D NYP54_01195 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D NYP54_08365 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D NYP54_00355 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D NYP54_03195 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D NYP54_02030 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D NYP54_10050 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D NYP54_10135 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NYP54_04115 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D NYP54_01890 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D NYP54_06485 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D NYP54_06700 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D NYP54_03340 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ
D NYP54_03365 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:cys03011]
D NYP54_00980 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D NYP54_11110 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D NYP54_06010 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D NYP54_05920 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D NYP54_05955 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D NYP54_04650 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D NYP54_05570 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D NYP54_05970 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D NYP54_06160 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D NYP54_05560 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D NYP54_05925 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D NYP54_05575 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D NYP54_05930 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D NYP54_05975 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D NYP54_03200 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D NYP54_01725 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D NYP54_05995 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D NYP54_04645 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D NYP54_06020 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D NYP54_09600 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D NYP54_07785 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D NYP54_05795 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D NYP54_06025 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D NYP54_06040 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D NYP54_06035 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D NYP54_05980 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D NYP54_05965 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D NYP54_04640 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D NYP54_05790 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D NYP54_05800 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D NYP54_05785 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D NYP54_06155 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D NYP54_05990 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D NYP54_05945 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D NYP54_06005 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D NYP54_05910 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D NYP54_05960 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D NYP54_01710 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D NYP54_03725 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D NYP54_10425 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D NYP54_06015 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D NYP54_06030 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D NYP54_05985 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D NYP54_10430 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D NYP54_06140 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D NYP54_06000 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D NYP54_05950 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D NYP54_10360 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D NYP54_04840 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D NYP54_06145 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D NYP54_05450 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D NYP54_03730 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D NYP54_05935 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D NYP54_04085 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
C 03009 Ribosome biogenesis [BR:cys03009]
D NYP54_05165 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D NYP54_01195 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D NYP54_00225 era; GTPase Era K03595 era; GTPase
D NYP54_00490 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D NYP54_06460 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D NYP54_05410 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D NYP54_06775 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D NYP54_05805 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D NYP54_07950 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D NYP54_11390 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D NYP54_11155 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D NYP54_09970 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D NYP54_06790 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D NYP54_11070 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D NYP54_07670 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D NYP54_07580 class I SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D NYP54_01380 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D NYP54_01560 rlmE; 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D NYP54_08190 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D NYP54_06500 class I SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D NYP54_01730 rlmJ; 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D NYP54_08125 rlmKL; bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D NYP54_03715 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D NYP54_10525 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D NYP54_03700 rluB; 23S rRNA pseudouridine(2605) synthase RluB K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D NYP54_07435 RluA family pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D NYP54_11220 rluD; 23S rRNA pseudouridine(1911/1915/1917) synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D NYP54_08145 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D NYP54_01720 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D NYP54_06305 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D NYP54_07925 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D NYP54_07860 prmB; 50S ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D NYP54_09990 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D NYP54_09960 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D NYP54_09730 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D NYP54_00355 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D NYP54_03580 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D NYP54_05395 der; ribosome biogenesis GTPase Der K03977 engA; GTPase
D NYP54_02840 ylqF; ribosome biogenesis GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A
D NYP54_04110 hflX; GTPase HflX K03665 hflX; GTPase
D NYP54_06845 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D NYP54_06695 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D NYP54_05400 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D NYP54_05415 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D NYP54_03570 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D NYP54_10500 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D NYP54_11185 yhbY; ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
D NYP54_09850 DUF615 domain-containing protein K09889 yjgA; ribosome-associated protein
D NYP54_03355 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor
D NYP54_10475 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D NYP54_04835 YceD family protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:cys03016]
D NYP54_08690 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NYP54_06620 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D NYP54_04530 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D NYP54_02895 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NYP54_09840 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NYP54_02480 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NYP54_05465 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NYP54_07415 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D NYP54_08155 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NYP54_04150 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NYP54_08965 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D NYP54_03740 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NYP54_05885 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NYP54_07855 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NYP54_02735 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D NYP54_06530 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NYP54_11275 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D NYP54_11280 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NYP54_11370 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NYP54_10290 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D NYP54_10580 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D NYP54_07755 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D NYP54_02600 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D NYP54_01610 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D NYP54_05170 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D NYP54_06685 tRNA pseudouridine(13) synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D NYP54_09540 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NYP54_06845 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D NYP54_10120 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D NYP54_07915 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D NYP54_11005 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D NYP54_05445 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D NYP54_00665 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D NYP54_03380 RNB domain-containing ribonuclease K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D NYP54_02940 HRDC domain-containing protein K03684 rnd; ribonuclease D [EC:3.1.13.5]
D NYP54_10235 ettA; energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA
D NYP54_08970 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D NYP54_02195 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D NYP54_08380 tadA; tRNA adenosine(34) deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D NYP54_10635 dusA; tRNA dihydrouridine(20/20a) synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D NYP54_07920 dusB; tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D NYP54_10510 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D NYP54_11400 RNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D NYP54_01715 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D NYP54_10770 trmL; tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D NYP54_04680 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D NYP54_09395 ttcA; tRNA 2-thiocytidine(32) synthetase TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D NYP54_06565 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D NYP54_00970 TusE/DsrC/DsvC family sulfur relay protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D NYP54_09420 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein
D NYP54_01175 amino acid transporter K06980 ygfZ; tRNA-modifying protein YgfZ
D NYP54_10800 tRNA-(ms[2]io[6]A)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D NYP54_00095 mnmC; bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D NYP54_10435 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D NYP54_00635 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D NYP54_00625 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D NYP54_02720 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D NYP54_07610 queG; tRNA epoxyqueuosine(34) reductase QueG K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D NYP54_07850 tgt; tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D NYP54_09180 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D NYP54_00480 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D NYP54_10005 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D NYP54_10270 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D NYP54_04860 tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D NYP54_05175 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D NYP54_03195 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D NYP54_05155 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D NYP54_10230 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:cys03012]
D NYP54_05405 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D NYP54_03735 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D NYP54_04630 ATP-binding cassette domain-containing protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D NYP54_11115 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D NYP54_05820 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D NYP54_05565 fusA; elongation factor G K02355 fusA; elongation factor G
D NYP54_06975 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D NYP54_11125 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D NYP54_06970 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D NYP54_10480 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D NYP54_09800 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D NYP54_01200 efp; elongation factor P K02356 efp; elongation factor P
D NYP54_00300 epmA; EF-P lysine aminoacylase EpmA K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D NYP54_01205 epmB; EF-P beta-lysylation protein EpmB K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D NYP54_07410 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D NYP54_10810 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:cys03110]
D NYP54_09200 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D NYP54_02730 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D NYP54_10095 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D NYP54_06235 hslU; ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D NYP54_07745 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D NYP54_10050 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D NYP54_10135 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NYP54_10055 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D NYP54_00880 DnaJ domain-containing protein K05516 cbpA; curved DNA-binding protein
D NYP54_10045 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D NYP54_01260 Hsp20 family protein K04080 ibpA; molecular chaperone IbpA
D NYP54_01150 hslR; ribosome-associated heat shock protein Hsp15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D NYP54_10130 co-chaperone GroES K04078 groES; chaperonin GroES
D NYP54_07735 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D NYP54_08770 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D NYP54_00145 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NYP54_03170 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NYP54_04340 hypA; hydrogenase maturation nickel metallochaperone HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D NYP54_04335 hypB; hydrogenase nickel incorporation protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D NYP54_10115 SurA N-terminal domain-containing protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D NYP54_07725 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D NYP54_04875 fkpB; FKBP-type peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D NYP54_10835 peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D NYP54_07955 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D NYP54_02025 trxA; thioredoxin K03671 TXN; thioredoxin
D NYP54_06110 grxB; glutaredoxin 2 K03675 grxB; glutaredoxin 2
D NYP54_03165 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3
D NYP54_04670 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D NYP54_03950 disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D NYP54_05065 dsbD; protein-disulfide reductase DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
C 04131 Membrane trafficking [BR:cys04131]
D NYP54_08920 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D NYP54_10665 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NYP54_10675 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NYP54_07745 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:cys03051]
D NYP54_07745 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:cys03032]
D NYP54_03645 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D NYP54_05485 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D NYP54_10105 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D NYP54_11640 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D NYP54_06915 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D NYP54_11235 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D NYP54_11805 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D NYP54_07795 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D NYP54_07065 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYP54_11645 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYP54_07970 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NYP54_06910 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NYP54_03620 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NYP54_11305 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NYP54_00540 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NYP54_04060 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NYP54_00485 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NYP54_11405 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D NYP54_09265 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NYP54_03660 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D NYP54_06520 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D NYP54_09260 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D NYP54_09555 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D NYP54_03150 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D NYP54_02020 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:cys03036]
D NYP54_05485 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D NYP54_05165 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D NYP54_10105 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D NYP54_11640 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D NYP54_00880 DnaJ domain-containing protein K05516 cbpA; curved DNA-binding protein
D NYP54_00885 chaperone modulator CbpM K18997 cbpM; chaperone modulatory protein CbpM
D NYP54_06915 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D NYP54_08440 SIS domain-containing protein K12961 diaA; DnaA initiator-associating protein
D NYP54_02610 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NYP54_02630 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NYP54_04115 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D NYP54_09410 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D NYP54_00610 septum formation initiator family protein K05589 ftsB; cell division protein FtsB
D NYP54_11080 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NYP54_11365 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NYP54_03410 DNA translocase FtsK 4TM domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D NYP54_11075 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D NYP54_09405 FtsQ-type POTRA domain-containing protein K03589 ftsQ; cell division protein FtsQ
D NYP54_10155 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D NYP54_00180 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D NYP54_09415 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D NYP54_06060 zapE; cell division protein ZapE K06916 zapE; cell division protein ZapE
D NYP54_03955 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYP54_10825 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYP54_01040 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D NYP54_01035 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D NYP54_01030 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D NYP54_01335 ParA family protein K03496 parA; chromosome partitioning protein
D NYP54_11485 AAA family ATPase K03496 parA; chromosome partitioning protein
D NYP54_01330 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NYP54_09555 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D NYP54_03150 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D NYP54_11005 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D NYP54_06790 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D NYP54_07585 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D NYP54_01675 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D NYP54_05460 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D NYP54_01065 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D NYP54_06725 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D NYP54_00585 yihA; ribosome biogenesis GTP-binding protein YihA/YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:cys03400]
D NYP54_00295 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D NYP54_00565 DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D NYP54_01370 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D NYP54_03210 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D NYP54_11145 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D NYP54_09740 mutT; 8-oxo-dGTP diphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NYP54_09790 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D NYP54_00050 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D NYP54_11310 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D NYP54_07720 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D NYP54_00285 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NYP54_03660 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D NYP54_09265 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NYP54_07625 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D NYP54_06635 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D NYP54_02930 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D NYP54_01105 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D NYP54_04240 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D NYP54_05780 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D NYP54_05775 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D NYP54_02975 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NYP54_05915 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NYP54_04660 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D NYP54_02190 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D NYP54_03900 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D NYP54_04180 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D NYP54_00935 exonuclease domain-containing protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D NYP54_05055 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D NYP54_07970 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NYP54_06910 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NYP54_03620 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NYP54_11305 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NYP54_00540 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NYP54_04060 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NYP54_00485 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NYP54_07065 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYP54_11645 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYP54_07810 recA; recombinase RecA K03553 recA; recombination protein RecA
D NYP54_00040 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D NYP54_02660 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D NYP54_00035 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D NYP54_02470 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D NYP54_10190 exonuclease SbcCD subunit D C-terminal domain-containing protein K03547 sbcD; DNA repair protein SbcD/Mre11
D NYP54_10325 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D NYP54_00870 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D NYP54_02925 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D NYP54_09550 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D NYP54_04035 recR; recombination mediator RecR K06187 recR; recombination protein RecR
D NYP54_00455 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D NYP54_11230 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D NYP54_06520 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D NYP54_09260 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D NYP54_02020 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D NYP54_10105 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D NYP54_11640 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D NYP54_02610 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NYP54_02630 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NYP54_10075 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D NYP54_05045 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D NYP54_07815 recombination regulator RecX K03565 recX; regulatory protein
D NYP54_01170 UvrD-helicase domain-containing protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D NYP54_00290 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D NYP54_00155 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NYP54_04425 nrdA; ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NYP54_04430 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:cys03029]
D NYP54_05405 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D NYP54_03735 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D NYP54_11115 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D NYP54_05820 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D NYP54_05565 fusA; elongation factor G K02355 fusA; elongation factor G
D NYP54_00225 era; GTPase Era K03595 era; GTPase
D NYP54_11370 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NYP54_02895 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NYP54_08155 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NYP54_05465 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NYP54_06360 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D NYP54_06365 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D NYP54_06355 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D NYP54_06965 DNA/RNA non-specific endonuclease K01173 ENDOG; endonuclease G, mitochondrial
D NYP54_07065 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYP54_11645 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYP54_06510 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D NYP54_10050 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D NYP54_10045 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D NYP54_10135 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NYP54_10130 co-chaperone GroES K04078 groES; chaperonin GroES
D NYP54_10055 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D NYP54_09540 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NYP54_04670 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D NYP54_05460 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D NYP54_08640 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D NYP54_05435 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NYP54_07745 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:cys02000]
D NYP54_04375 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D NYP54_03825 ABC transporter ATP-binding protein/permease K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-]
D NYP54_11320 type I secretion system permease/ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D NYP54_00220 cydC; cysteine/glutathione ABC transporter ATP-binding protein/permease CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D NYP54_00215 cydD; thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D NYP54_06720 ATP-binding cassette domain-containing protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D NYP54_11440 ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein
D NYP54_09860 polyamine ABC transporter substrate-binding protein K11073 potF; putrescine transport system substrate-binding protein
D NYP54_09465 ABC transporter permease subunit K11074 potI; putrescine transport system permease protein
D NYP54_09470 ABC transporter permease subunit K11075 potH; putrescine transport system permease protein
D NYP54_09475 potA; polyamine ABC transporter ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D NYP54_08995 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D NYP54_01995 ABC transporter permease subunit K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D NYP54_07540 ABC transporter permease subunit K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D NYP54_01990 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D NYP54_00600 rbsB; ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D NYP54_00595 rbsC; ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein
D NYP54_00590 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D NYP54_00410 MlaD family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NYP54_01015 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NYP54_00420 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NYP54_01020 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NYP54_00415 ATP-binding cassette domain-containing protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NYP54_01025 ATP-binding cassette domain-containing protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NYP54_00405 ABC-type transport auxiliary lipoprotein family protein K18480 linN; cholesterol transport system auxiliary component
D NYP54_01010 ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein
D NYP54_01005 STAS domain-containing protein K07122 mlaB; phospholipid transport system transporter-binding protein
D NYP54_01520 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D NYP54_01535 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D NYP54_01530 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D NYP54_01525 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D NYP54_10300 MetQ/NlpA family ABC transporter substrate-binding protein K02072 metI; D-methionine transport system permease protein
D NYP54_10305 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D NYP54_07730 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D NYP54_08585 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D NYP54_08590 ABC transporter permease subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D NYP54_08600 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D NYP54_08595 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D NYP54_02590 peptide ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D NYP54_02585 ABC transporter permease subunit K15581 oppB; oligopeptide transport system permease protein
D NYP54_02580 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D NYP54_02575 ATP-binding cassette domain-containing protein K15583 oppD; oligopeptide transport system ATP-binding protein
D NYP54_02570 dipeptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D NYP54_02050 ABC transporter substrate-binding protein K25132 hmuT; heme transport system substrate-binding protein
D NYP54_01045 iron ABC transporter permease K25133 hmuU; heme transport system permease protein
D NYP54_02045 iron ABC transporter permease K25133 hmuU; heme transport system permease protein
D NYP54_01165 ATP-binding cassette domain-containing protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D NYP54_02040 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D NYP54_00510 ABC transporter substrate-binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D NYP54_11105 zinc ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D NYP54_11095 metal ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D NYP54_11100 ATP-binding cassette domain-containing protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D NYP54_11165 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D NYP54_11160 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D NYP54_11065 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D NYP54_05035 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein
D NYP54_05030 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D NYP54_02255 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D NYP54_08450 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D NYP54_02260 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D NYP54_08455 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D NYP54_00820 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D NYP54_08530 DASS family sodium-coupled anion symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D NYP54_05705 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D NYP54_08060 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D NYP54_10385 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D NYP54_01515 MFS transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D NYP54_06405 MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D NYP54_10080 multidrug effflux MFS transporter K18552 cmlA; MFS transporter, DHA1 family, chloramphenicol/florfenicol resistance protein
D NYP54_01825 MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D NYP54_02670 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D NYP54_01275 MFS transporter K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD
D NYP54_01635 Bcr/CflA family efflux MFS transporter K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD
D NYP54_10340 DHA2 family efflux MFS transporter permease subunit K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D NYP54_06490 ptsP; phosphoenolpyruvate--protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D NYP54_03330 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D NYP54_02240 ptsP; phosphoenolpyruvate--protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
D NYP54_02245 nagE; N-acetylglucosamine-specific PTS transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D NYP54_03335 PTS sugar transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D NYP54_03350 PTS sugar transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D NYP54_00515 aquaporin family protein K02440 glpF; glycerol uptake facilitator
D NYP54_04065 NAD-binding protein K10716 kch; voltage-gated potassium channel
D NYP54_00530 glutathione S-transferase N-terminal domain-containing protein K03599 sspA; stringent starvation protein A
D NYP54_06165 glutathione S-transferase N-terminal domain-containing protein K03599 sspA; stringent starvation protein A
D NYP54_01495 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D NYP54_03985 Bax inhibitor-1/YccA family protein K19416 yccA; modulator of FtsH protease
D NYP54_00620 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D NYP54_03075 mechanosensitive ion channel family protein K16052 ynaI; MscS family membrane protein
D NYP54_02070 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D NYP54_02065 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D NYP54_04710 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D NYP54_04705 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR
D NYP54_09055 zinc transporter ZntB K16074 zntB; zinc transporter
D NYP54_06210 crcB; fluoride efflux transporter CrcB K06199 crcB; fluoride exporter
D NYP54_00695 CNNM domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D NYP54_04625 OmpP1/FadL family transporter K06076 fadL; long-chain fatty acid transport protein
D NYP54_08930 outer membrane protein transport protein K06076 fadL; long-chain fatty acid transport protein
D NYP54_06825 outer membrane protein OmpK K05517 tsx; nucleoside-specific channel-forming protein
D NYP54_02060 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D NYP54_01835 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NYP54_04790 TolC family outer membrane protein K12340 tolC; outer membrane protein
D NYP54_06710 TolC family protein K12340 tolC; outer membrane protein
D NYP54_06510 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D NYP54_00110 bamB; outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB
D NYP54_11225 outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD
D NYP54_08435 bamE; outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE
D NYP54_08375 hypothetical protein K07278 tamA; translocation and assembly module TamA
D NYP54_00245 lptC; LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC
D NYP54_07960 LPS-assembly protein LptD K04744 lptD; LPS-assembly protein
D NYP54_02900 hypothetical protein K03643 lptE; LPS-assembly lipoprotein
D NYP54_10495 CBS domain-containing protein K06189 corC; hemolysin (HlyC) family protein
D NYP54_00800 amino acid permease K11733 lysP; lysine-specific permease
D NYP54_05715 amino acid permease K11733 lysP; lysine-specific permease
D NYP54_04030 APC family permease K20265 gadC; glutamate:GABA antiporter
D NYP54_06445 APC family permease K20265 gadC; glutamate:GABA antiporter
D NYP54_01345 efflux RND transporter permease subunit K07787 cusA; copper/silver efflux system protein
D NYP54_03960 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D NYP54_09085 GRP family sugar transporter K05340 glcU; glucose uptake protein
D NYP54_07560 betT; choline BCCT transporter BetT K02168 betT; choline/glycine/proline betaine transport protein
D NYP54_01545 calcium:proton antiporter K07300 chaA; Ca2+:H+ antiporter
D NYP54_02495 putP; sodium/proline symporter PutP K11928 putP; sodium/proline symporter
D NYP54_10640 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D NYP54_10240 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D NYP54_03420 cation:proton antiporter K26730 napA; Na+:H+ antiporter
D NYP54_08980 potassium transporter K03498 trkH; trk/ktr system potassium uptake protein
D NYP54_01570 trkA; Trk system potassium transporter TrkA K03499 trkA; trk/ktr system potassium uptake protein
D NYP54_00270 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D NYP54_00650 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D NYP54_00525 NupC/NupG family nucleoside CNT transporter K11535 nupC; nucleoside transport protein
D NYP54_06325 amino acid transporter K03834 tyrP; tyrosine-specific transport protein
D NYP54_10010 amino acid transporter K03834 tyrP; tyrosine-specific transport protein
D NYP54_09995 clcA; H(+)/Cl(-) exchange transporter ClcA K03281 clcA; chloride channel protein, CIC family
D NYP54_04290 metal transporter K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D NYP54_05660 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family
D NYP54_08950 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D NYP54_06425 AEC family transporter K13936 mdcF; malonate transporter and related proteins
D NYP54_00280 AI-2E family transporter K03548 perM; putative permease
D NYP54_11385 queuosine precursor transporter K09125 yhhQ; queuosine precursor transporter
D NYP54_10155 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D NYP54_04690 OmpA family protein K03640 pal; peptidoglycan-associated lipoprotein
D NYP54_04700 tolA; cell envelope integrity protein TolA K03646 tolA; colicin import membrane protein
D NYP54_04695 tolB; Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein
D NYP54_00230 HlyD family secretion protein K03543 emrA; membrane fusion protein, multidrug efflux system
D NYP54_01350 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D NYP54_11325 HlyD family type I secretion periplasmic adaptor subunit K11003 hlyD; membrane fusion protein, hemolysin D
D NYP54_03955 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYP54_10825 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYP54_00910 FeoA domain-containing protein K04758 feoA; ferrous iron transport protein A
D NYP54_00905 feoB; Fe(2+) transporter permease subunit FeoB K04759 feoB; ferrous iron transport protein B
D NYP54_03245 MipA/OmpV family protein K07274 mipA; MipA family protein
D NYP54_09660 MipA/OmpV family protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:cys02044]
D NYP54_11320 type I secretion system permease/ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D NYP54_11325 HlyD family type I secretion periplasmic adaptor subunit K11003 hlyD; membrane fusion protein, hemolysin D
D NYP54_04790 TolC family outer membrane protein K12340 tolC; outer membrane protein
D NYP54_06710 TolC family protein K12340 tolC; outer membrane protein
D NYP54_07455 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D NYP54_08430 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D NYP54_08425 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC
D NYP54_09520 type IV pilin protein K02655 pilE; type IV pilus assembly protein PilE
D NYP54_03710 pilW; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D NYP54_08030 pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D NYP54_08035 PilN domain-containing protein K02663 pilN; type IV pilus assembly protein PilN
D NYP54_08040 type 4a pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO
D NYP54_08045 pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D NYP54_08050 pilQ; type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D NYP54_08985 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D NYP54_11470 hypothetical protein K02672 pilW; type IV pilus assembly protein PilW
D NYP54_10320 hypothetical protein K02676 pilZ; type IV pilus assembly protein PilZ
D NYP54_11300 GspH/FimT family protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D NYP54_07215 ATPase, T2SS/T4P/T4SS family K10965 tcpT; toxin coregulated pilus biosynthesis protein T
D NYP54_09495 YggT family protein K02221 yggT; YggT family protein
D NYP54_09895 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D NYP54_02330 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D NYP54_02325 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K02401 flhB; flagellar biosynthesis protein FlhB
D NYP54_02380 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D NYP54_02395 FliI/YscN family ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D NYP54_02425 FliM/FliN family flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D NYP54_02435 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D NYP54_02315 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D NYP54_02320 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D NYP54_11675 traF; conjugal transfer protein TraF K12057 traF; conjugal transfer pilus assembly protein TraF
D NYP54_11680 conjugal transfer protein TraN K12058 traN; conjugal transfer mating pair stabilization protein TraN
D NYP54_11685 trbC; type-F conjugative transfer system pilin assembly protein TrbC K12059 trbC; conjugal transfer pilus assembly protein TrbC
D NYP54_11690 traU; conjugal transfer pilus assembly protein TraU K12060 traU; conjugal transfer pilus assembly protein TraU
D NYP54_11695 traW; type-F conjugative transfer system protein TraW K12061 traW; conjugal transfer pilus assembly protein TraW
D NYP54_11700 TraC family protein K12063 traC; conjugal transfer ATP-binding protein TraC
D NYP54_11705 traV; type IV conjugative transfer system lipoprotein TraV K12064 traV; conjugal transfer pilus assembly protein TraV
D NYP54_11710 hypothetical protein K12065 traB; conjugal transfer pilus assembly protein TraB
D NYP54_11720 traE; type IV conjugative transfer system protein TraE K12067 traE; conjugal transfer pilus assembly protein TraE
D NYP54_11725 traL; type IV conjugative transfer system protein TraL K12068 traL; conjugal transfer pilus assembly protein TraL
D NYP54_11665 conjugal transfer protein TraH K12072 traH; conjugative transfer pilus assembly protein TraH
D NYP54_07375 ATPase, T2SS/T4P/T4SS family K12203 dotB; defect in organelle trafficking protein DotB [EC:7.2.4.8]
D NYP54_07380 type IV secretion system DotC family protein K12204 dotC; defect in organelle trafficking protein DotC
D NYP54_07260 hypothetical protein K12206 icmB; intracellular multiplication protein IcmB [EC:7.2.4.8]
D NYP54_07350 hypothetical protein K12212 icmJ; intracellular multiplication protein IcmJ
D NYP54_07245 DotH/IcmK family type IV secretion protein K12213 icmK; intracellular multiplication protein IcmK
D NYP54_07270 DotI/IcmL/TraM family protein K12214 icmL; intracellular multiplication protein IcmL
D NYP54_07365 type IV secretion system DNA-binding domain-containing protein K12217 icmO; intracellular multiplication protein IcmO [EC:7.2.4.8]
D NYP54_07355 hypothetical protein K12218 icmP; intracellular multiplication protein IcmP
D NYP54_07370 icmT; IcmT/TraK family protein K12222 icmT; intracellular multiplication protein IcmT
D NYP54_08025 trbB; P-type conjugative transfer ATPase TrbB K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8]
D NYP54_07975 TrbC/VirB2 family protein K20528 trbC; type IV secretion system protein TrbC
D NYP54_07980 VirB3 family type IV secretion system protein K20529 trbD; type IV secretion system protein TrbD
D NYP54_07985 trbE; conjugal transfer protein TrbE K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8]
D NYP54_07990 hypothetical protein K20531 trbF; type IV secretion system protein TrbF
D NYP54_07995 type IV secretion system protein K20531 trbF; type IV secretion system protein TrbF
D NYP54_08000 TrbG/VirB9 family P-type conjugative transfer protein K20532 trbG; type IV secretion system protein TrbG
D NYP54_08005 conjugal transfer protein TrbI K20533 trbI; type IV secretion system protein TrbI
D NYP54_04920 tssK; type VI secretion system baseplate subunit TssK K11893 impJ; type VI secretion system protein ImpJ
D NYP54_04930 tssC; type VI secretion system contractile sheath large subunit K11900 impC; type VI secretion system protein ImpC
D NYP54_05125 tssC; type VI secretion system contractile sheath large subunit K11900 impC; type VI secretion system protein ImpC
D NYP54_10850 tssC; type VI secretion system contractile sheath large subunit K11900 impC; type VI secretion system protein ImpC
D NYP54_04935 tssB; type VI secretion system contractile sheath small subunit K11901 impB; type VI secretion system protein ImpB
D NYP54_05120 tssB; type VI secretion system contractile sheath small subunit K11901 impB; type VI secretion system protein ImpB
D NYP54_10860 tssB; type VI secretion system contractile sheath small subunit K11901 impB; type VI secretion system protein ImpB
D NYP54_04385 hypothetical protein K21965 ecpB; Mat/Ecp fimbriae periplasmic chaperone
D NYP54_04390 TcfC E-set like domain-containing protein K21966 ecpC; Mat/Ecp fimbriae outer membrane usher protein
D NYP54_09620 TcfC E-set like domain-containing protein K21966 ecpC; Mat/Ecp fimbriae outer membrane usher protein
D NYP54_02615 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NYP54_00145 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NYP54_03170 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NYP54_05235 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D NYP54_05810 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D NYP54_05230 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D NYP54_08840 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D NYP54_05940 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D NYP54_09980 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D NYP54_04855 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D NYP54_05240 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D NYP54_05435 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:cys02042]
D NYP54_00695 CNNM domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D NYP54_00430 hemolysin III family protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:cys02022]
D NYP54_06200 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D NYP54_06205 response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D NYP54_06440 response regulator transcription factor K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D NYP54_07405 response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D NYP54_10955 HAMP domain-containing histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D NYP54_10950 response regulator transcription factor K07661 rstA; two-component system, OmpR family, response regulator RstA
D NYP54_05845 ATP-binding protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D NYP54_10065 response regulator transcription factor K07666 qseB; two-component system, OmpR family, response regulator QseB
D NYP54_08225 ATP-binding protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D NYP54_08230 response regulator transcription factor K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D NYP54_03145 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D NYP54_03915 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D NYP54_05260 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D NYP54_08550 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D NYP54_08665 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D NYP54_09605 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D NYP54_10620 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D NYP54_01805 ATP-binding protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D NYP54_02935 uvrY; UvrY/SirA/GacA family response regulator transcription factor K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
C 02035 Bacterial motility proteins [BR:cys02035]
D NYP54_02395 FliI/YscN family ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D NYP54_02435 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D NYP54_02315 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D NYP54_02320 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D NYP54_02330 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D NYP54_02325 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K02401 flhB; flagellar biosynthesis protein FlhB
D NYP54_02425 FliM/FliN family flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D NYP54_02380 fliF; flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D NYP54_02355 flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D NYP54_02350 flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D NYP54_02370 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D NYP54_02360 flagellar basal body protein K02387 flgB; flagellar basal-body rod protein FlgB
D NYP54_02365 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D NYP54_02410 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D NYP54_02335 flagellar hook basal-body protein K02391 flgF; flagellar basal-body rod protein FlgF
D NYP54_02340 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D NYP54_02415 flgF; flagellar basal-body rod protein FlgF K02390 flgE; flagellar hook protein FlgE
D NYP54_08985 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D NYP54_08430 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D NYP54_08425 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC
D NYP54_07455 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D NYP54_03710 pilW; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D NYP54_08050 pilQ; type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D NYP54_08045 pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D NYP54_08040 type 4a pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO
D NYP54_08035 PilN domain-containing protein K02663 pilN; type IV pilus assembly protein PilN
D NYP54_08030 pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D NYP54_10320 hypothetical protein K02676 pilZ; type IV pilus assembly protein PilZ
D NYP54_11470 hypothetical protein K02672 pilW; type IV pilus assembly protein PilW
D NYP54_09520 type IV pilin protein K02655 pilE; type IV pilus assembly protein PilE
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:cys04812]
D NYP54_00180 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D NYP54_09415 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D NYP54_09410 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D NYP54_01040 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D NYP54_01035 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D NYP54_01030 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D NYP54_01335 ParA family protein K03496 parA; chromosome partitioning protein
D NYP54_11485 AAA family ATPase K03496 parA; chromosome partitioning protein
D NYP54_01330 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:cys04147]
D NYP54_07745 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D NYP54_10665 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NYP54_10670 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D NYP54_10675 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NYP54_05695 peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D NYP54_10135 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NYP54_10050 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D NYP54_04130 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NYP54_02690 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D NYP54_05820 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D NYP54_07755 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D NYP54_09235 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NYP54_03205 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D NYP54_03215 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D NYP54_04580 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D NYP54_04615 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D NYP54_00375 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D NYP54_07035 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D NYP54_06480 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NYP54_11190 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D NYP54_00360 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D NYP54_00385 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D NYP54_09185 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NYP54_10220 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D NYP54_02850 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NYP54_04140 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D NYP54_08835 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D NYP54_10180 lipocalin family protein K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:cys02048]
D NYP54_02205 type I restriction endonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D NYP54_07895 DEAD/DEAH box helicase family protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D NYP54_02215 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D NYP54_07885 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D NYP54_02225 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D NYP54_07890 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D NYP54_05485 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D NYP54_06885 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D NYP54_07640 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D NYP54_09745 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D NYP54_09810 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D NYP54_11245 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D NYP54_09805 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K18842 chpS; antitoxin ChpS
D NYP54_08960 type II toxin-antitoxin system RelE/ParE family toxin K06218 relE; mRNA interferase RelE/StbE
D NYP54_08955 DUF6290 family protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D NYP54_07510 type II toxin-antitoxin system YafQ family toxin K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D NYP54_11025 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D NYP54_01555 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4
D NYP54_09155 type II toxin-antitoxin system HigB family toxin K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D NYP54_11260 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1
D NYP54_09160 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D NYP54_09380 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D NYP54_11265 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D NYP54_05155 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D NYP54_10230 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D NYP54_05150 vapB; type II toxin-antitoxin system VapB family antitoxin K18829 mvpT; antitoxin VapB
D NYP54_10225 vapB; type II toxin-antitoxin system VapB family antitoxin K18829 mvpT; antitoxin VapB
D NYP54_06610 type II toxin-antitoxin system VapC family toxin K07062 fitB; toxin FitB [EC:3.1.-.-]
D NYP54_10390 type II toxin-antitoxin system VapC family toxin K07062 fitB; toxin FitB [EC:3.1.-.-]
D NYP54_06605 antitoxin K21495 fitA; antitoxin FitA
D NYP54_00180 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D NYP54_09415 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D NYP54_09555 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D NYP54_03150 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D NYP54_08690 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NYP54_09540 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:cys01504]
D NYP54_10080 multidrug effflux MFS transporter K18552 cmlA; MFS transporter, DHA1 family, chloramphenicol/florfenicol resistance protein
D NYP54_03545 chloramphenicol phosphotransferase CPT family protein K18554 cpt; chloramphenicol 3-O phosphotransferase [EC:2.7.1.-]
D NYP54_01615 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D NYP54_07070 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D NYP54_03955 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYP54_10825 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYP54_03960 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D NYP54_01360 heavy metal-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D NYP54_04790 TolC family outer membrane protein K12340 tolC; outer membrane protein
D NYP54_06710 TolC family protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:cys03100]
D NYP54_09515 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NYP54_04215 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NYP54_05145 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D NYP54_05905 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D NYP54_07840 tRNA-Met K14230 tRNA-Met; tRNA Met
D NYP54_05015 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D NYP54_05835 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
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A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D NYP54_01810 coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D NYP54_00335 NADPH-dependent 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D NYP54_10265 NAD(P)H-dependent oxidoreductase K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D NYP54_03140 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D NYP54_03650 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D NYP54_00960 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D NYP54_04830 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D NYP54_07040 Dyp-type peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D NYP54_07845 arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D NYP54_04795 methyltransferase domain-containing protein K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D NYP54_04595 acetylornithine carbamoyltransferase K13043 argF; N-succinyl-L-ornithine transcarbamylase [EC:2.1.3.11]
D NYP54_10490 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D NYP54_09195 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D NYP54_10485 glnE; bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D NYP54_01745 CoA transferase K18702 uctC; CoA:oxalate CoA-transferase [EC:2.8.3.19]
D NYP54_06875 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D NYP54_09045 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D NYP54_07665 HAD family hydrolase K07015 yqeG; putative phosphatase [EC:3.1.3.-]
D NYP54_00120 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D NYP54_01125 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D NYP54_01365 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D NYP54_03990 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D NYP54_06310 hypothetical protein K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D NYP54_06385 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D NYP54_00425 Maf family nucleotide pyrophosphatase K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D NYP54_01510 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D NYP54_02110 cphA; cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D NYP54_02450 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D NYP54_11150 RnfABCDGE type electron transport complex subunit B K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D NYP54_01580 cation-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D NYP54_08500 ferredoxin family protein K05524 fdxA; ferredoxin
D NYP54_04435 yfaE; class I ribonucleotide reductase maintenance protein YfaE K11107 yfaE; ferredoxin
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D NYP54_04075 cysZ; sulfate transporter CysZ K06203 cysZ; CysZ protein
D NYP54_08990 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
D NYP54_07760 ubiB; ubiquinone biosynthesis regulatory protein kinase UbiB K03688 ubiB; ubiquinone biosynthesis protein
D NYP54_07765 SCP2 sterol-binding domain-containing protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D NYP54_06280 accessory factor UbiK family protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D NYP54_08175 AbgT family transporter K12942 abgT; aminobenzoyl-glutamate transport protein
C 99988 Secondary metabolism
C 99999 Others
D NYP54_01975 carboxylesterase K06999 K06999; phospholipase/carboxylesterase
D NYP54_07655 alpha/beta hydrolase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D NYP54_07595 cold-shock protein K03704 cspA; cold shock protein
D NYP54_03875 helix-hairpin-helix domain-containing protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D NYP54_09205 ATP-dependent Clp protease adaptor ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D NYP54_10085 tig; trigger factor K03545 tig; trigger factor
D NYP54_00065 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
D NYP54_04325 HypC/HybG/HupF family hydrogenase formation chaperone K04653 hypC; hydrogenase expression/formation protein HypC
D NYP54_04320 hypD; hydrogenase formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D NYP54_04315 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D NYP54_04330 hypF; carbamoyltransferase HypF K04656 hypF; hydrogenase maturation protein HypF
D NYP54_06275 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D NYP54_07515 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D NYP54_06575 YraN family protein K07460 yraN; putative endonuclease
D NYP54_02815 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease
D NYP54_04885 dprA; DNA-processing protein DprA K04096 smf; DNA processing protein
D NYP54_01270 replication-associated recombination protein A K07478 ycaJ; putative ATPase
D NYP54_01300 IS66 family transposase K07484 K07484; transposase
D NYP54_02550 IS66 family transposase K07484 K07484; transposase
D NYP54_03750 IS66 family transposase K07484 K07484; transposase
D NYP54_04245 IS66 family transposase K07484 K07484; transposase
D NYP54_05655 IS66 family transposase K07484 K07484; transposase
D NYP54_06125 IS66 family transposase K07484 K07484; transposase
D NYP54_09275 IS66 family transposase K07484 K07484; transposase
D NYP54_11050 IS66 family transposase K07484 K07484; transposase
D NYP54_11355 IS66 family transposase K07484 K07484; transposase
D NYP54_05245 transposase K07491 rayT; REP-associated tyrosine transposase
D NYP54_11035 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase
D NYP54_02700 IS3 family transposase K07497 K07497; putative transposase
D NYP54_03430 IS3 family transposase K07497 K07497; putative transposase
D NYP54_03850 IS3 family transposase K07497 K07497; putative transposase
D NYP54_05210 IS3 family transposase K07497 K07497; putative transposase
D NYP54_06320 IS3 family transposase K07497 K07497; putative transposase
D NYP54_08165 IS3 family transposase K07497 K07497; putative transposase
D NYP54_08355 IS3 family transposase K07497 K07497; putative transposase
D NYP54_09010 IS3 family transposase K07497 K07497; putative transposase
D NYP54_09315 IS3 family transposase K07497 K07497; putative transposase
D NYP54_09390 IS3 family transposase K07497 K07497; putative transposase
D NYP54_11330 IS3 family transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D NYP54_04040 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D NYP54_01090 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family
D NYP54_03720 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D NYP54_00235 MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D NYP54_02490 oligopeptide:H+ symporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D NYP54_02745 MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D NYP54_03395 peptide MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D NYP54_05425 peptide MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D NYP54_07085 MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D NYP54_07620 oligopeptide:H+ symporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D NYP54_09780 oligopeptide:H+ symporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D NYP54_02270 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D NYP54_02750 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D NYP54_00125 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
C 99978 Cell growth
D NYP54_00545 septation protein A K06190 ispZ; intracellular septation protein
C 99993 Cell motility
D NYP54_02885 lpoB; penicillin-binding protein activator LpoB K07337 K07337; penicillin-binding protein activator
C 99995 Signaling proteins
D NYP54_07835 ProQ/FINO family protein K03607 proQ; ProP effector
D NYP54_04045 universal stress protein K06149 uspA; universal stress protein A
D NYP54_11255 typA; translational GTPase TypA K06207 typA; GTP-binding protein
D NYP54_10505 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D NYP54_03415 lolA; outer membrane lipoprotein chaperone LolA K03634 lolA; outer membrane lipoprotein carrier protein
D NYP54_05365 lolB; lipoprotein insertase outer membrane protein LolB K02494 lolB; outer membrane lipoprotein LolB
D NYP54_10345 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D NYP54_06505 OmpH family outer membrane protein K06142 hlpA; outer membrane protein
D NYP54_08675 NfeD family protein K07340 ybbJ; inner membrane protein
D NYP54_08460 HlyD family efflux transporter periplasmic adaptor subunit K01993 ABC-2.TX; HlyD family secretion protein
C 99994 Others
D NYP54_01145 hypothetical protein K06201 cutC; copper homeostasis protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D NYP54_03130 CvpA family protein K03558 cvpA; membrane protein required for colicin V production
D NYP54_06925 glucosaminidase domain-containing protein K03796 bax; Bax protein
D NYP54_05340 pyrimidine 5'-nucleotidase K07025 K07025; putative hydrolase of the HAD superfamily
D NYP54_03190 erpA; iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D NYP54_00815 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D NYP54_00825 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D NYP54_00920 YihY family inner membrane protein K07058 K07058; membrane protein
D NYP54_04780 SufE family protein K02426 sufE; cysteine desulfuration protein SufE
D NYP54_01815 rhodanese-related sulfurtransferase K07146 K07146; UPF0176 protein
D NYP54_07650 LemA family protein K03744 lemA; LemA protein
D NYP54_07875 LemA family protein K03744 lemA; LemA protein
D NYP54_04890 DUF494 domain-containing protein K03747 smg; Smg protein
D NYP54_03680 DedA family protein K03975 dedA; membrane-associated protein
D NYP54_03320 DUF202 domain-containing protein K00389 yidH; putative membrane protein
D NYP54_06540 cupin domain-containing protein K11312 K11312; cupin 2 domain-containing protein
D NYP54_10565 zinc ribbon domain-containing protein YjdM K06193 phnA; protein PhnA
C 99997 Function unknown
D NYP54_02520 cation:dicarboxylase symporter family transporter K06956 K06956; uncharacterized protein
D NYP54_05500 succinylglutamate desuccinylase/aspartoacylase family protein K06987 K06987; uncharacterized protein
D NYP54_05605 succinylglutamate desuccinylase/aspartoacylase family protein K06987 K06987; uncharacterized protein
D NYP54_05735 succinylglutamate desuccinylase/aspartoacylase family protein K06987 K06987; uncharacterized protein
D NYP54_05530 hypothetical protein K07000 K07000; uncharacterized protein
D NYP54_09215 alpha/beta fold hydrolase K07018 K07018; uncharacterized protein
D NYP54_01340 UPF0149 family protein K07039 K07039; uncharacterized protein
D NYP54_00645 TIGR01777 family oxidoreductase K07071 K07071; uncharacterized protein
D NYP54_04275 TSUP family transporter K07090 K07090; uncharacterized protein
D NYP54_08245 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D NYP54_09440 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D NYP54_09985 sel1 repeat family protein K07126 K07126; uncharacterized protein
D NYP54_04540 ATP-binding protein K07133 K07133; uncharacterized protein
D NYP54_08390 ATP-binding protein K07133 K07133; uncharacterized protein
D NYP54_11170 AAA family ATPase K07133 K07133; uncharacterized protein
D NYP54_05440 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein
D NYP54_07790 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein
D NYP54_03970 DUF493 domain-containing protein K09158 K09158; uncharacterized protein
D NYP54_09760 YcgN family cysteine cluster protein K09160 K09160; uncharacterized protein
D NYP54_06535 YaiI/YqxD family protein K09768 K09768; uncharacterized protein
D NYP54_06300 DUF378 domain-containing protein K09779 K09779; uncharacterized protein
D NYP54_06560 Trm112 family protein K09791 K09791; uncharacterized protein
D NYP54_06065 DUF465 domain-containing protein K09794 K09794; uncharacterized protein
D NYP54_03630 SIMPL domain-containing protein K09797 K09797; uncharacterized protein
D NYP54_02810 DUF475 domain-containing protein K09799 K09799; uncharacterized protein
D NYP54_08540 DUF475 domain-containing protein K09799 K09799; uncharacterized protein
D NYP54_00075 RnfH family protein K09801 K09801; uncharacterized protein
D NYP54_10760 BrnT family toxin K09803 K09803; uncharacterized protein
D NYP54_02870 hypothetical protein K09859 K09859; uncharacterized protein
D NYP54_08185 yaaA; peroxide stress protein YaaA K09861 K09861; uncharacterized protein
D NYP54_03095 UPF0149 family protein K09895 K09895; uncharacterized protein
D NYP54_06680 YhcB family protein K09908 K09908; uncharacterized protein
D NYP54_09930 DUF2062 domain-containing protein K09928 K09928; uncharacterized protein
D NYP54_03120 putative DNA-binding domain-containing protein K09929 K09929; uncharacterized protein
D NYP54_09525 putative DNA-binding domain-containing protein K09929 K09929; uncharacterized protein
D NYP54_03115 DUF692 domain-containing protein K09930 K09930; uncharacterized protein
D NYP54_09530 DUF692 domain-containing protein K09930 K09930; uncharacterized protein
D NYP54_02275 PhoU family transcriptional regulator K07220 K07220; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 27, 2024