+D GENES KO
#
KEGG Orthology (KO) - Dickeya aquatica
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:daq00010]
D DAQ1742_04414 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DAQ1742_03992 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DAQ1742_00166 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D DAQ1742_03937 fbp; Fructose-1,6-bisphosphatase, type I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DAQ1742_04304 glpX; Fructose-1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D DAQ1742_03920 fbaA; Fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DAQ1742_04308 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DAQ1742_02275 gapA; NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DAQ1742_03921 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D DAQ1742_02958 gpmA; Phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DAQ1742_03905 ytjC; Phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DAQ1742_03548 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DAQ1742_02756 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DAQ1742_02297 pykA; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DAQ1742_02765 ppsA; Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D DAQ1742_03791 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D DAQ1742_03790 aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DAQ1742_03789 lpd; Dihydrolipoamide dehydrogenase / Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DAQ1742_00787 nifJ; Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D DAQ1742_02012 adhC; Alcohol dehydrogenase class III; Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DAQ1742_02254 adhE; Alcohol dehydrogenase; Acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D DAQ1742_02520 yiaY; Alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D DAQ1742_04353 aldB; Aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D DAQ1742_00774 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DAQ1742_02952 galM; Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D DAQ1742_00032 yihX; Alpha-D-glucose-1-phosphatase K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D DAQ1742_03005 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D DAQ1742_02276 yeaD; glucose-6-phosphate 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D DAQ1742_04140 pck; Phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D DAQ1742_02752 arbB; phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D DAQ1742_03635 lfdP; Beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D DAQ1742_04444 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D DAQ1742_00486 bglA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D DAQ1742_00865 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D DAQ1742_02833 ptsG; PTS system, glucose-specific IIB component / PTS system, glucose-specific IIC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
C 00020 Citrate cycle (TCA cycle) [PATH:daq00020]
D DAQ1742_02989 gltA; Citrate synthase (si) K01647 CS; citrate synthase [EC:2.3.3.1]
D DAQ1742_03785 acnB; Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D DAQ1742_01536 Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D DAQ1742_02485 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D DAQ1742_02984 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D DAQ1742_02983 sucB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DAQ1742_03789 lpd; Dihydrolipoamide dehydrogenase / Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DAQ1742_02981 sucD; Succinyl-CoA ligase [ADP-forming] alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DAQ1742_02982 sucC; Succinyl-CoA ligase [ADP-forming] beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DAQ1742_02986 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DAQ1742_02985 sdhB; Succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DAQ1742_02988 sdhC; Succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D DAQ1742_02987 sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D DAQ1742_03982 frdA; Succinate dehydrogenase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DAQ1742_03983 frdB; Succinate dehydrogenase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DAQ1742_03984 frdC; Fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D DAQ1742_03985 frdD; Fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D DAQ1742_00878 fumA; Fumarate hydratase class I, aerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D DAQ1742_00676 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DAQ1742_04140 pck; Phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D DAQ1742_03791 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D DAQ1742_03790 aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DAQ1742_00787 nifJ; Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:daq00030]
D DAQ1742_03992 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DAQ1742_02295 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D DAQ1742_02940 pgl; 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D DAQ1742_02927 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D DAQ1742_04123 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D DAQ1742_02887 Transketolase, C-terminal section K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DAQ1742_02888 Transketolase, N-terminal section K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DAQ1742_03924 tktA; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DAQ1742_01787 Transketolase, N-terminal section K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DAQ1742_01788 Transketolase, C-terminal section K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DAQ1742_03893 talB; Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D DAQ1742_03915 rpiA; Ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D DAQ1742_00716 deoC; Deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D DAQ1742_00010 rbsK; Ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D DAQ1742_00718 deoB; Phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D DAQ1742_03005 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D DAQ1742_02138 prsA; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D DAQ1742_02294 kdgA; 2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D DAQ1742_04375 tkrA; Glyoxylate reductase / Hydroxypyruvate reductase / 2-ketoaldonate reductase, broad specificity K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D DAQ1742_04172 gntK; Gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D DAQ1742_00101 kdgK; 2-dehydro-3-deoxygluconate kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D DAQ1742_03920 fbaA; Fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DAQ1742_03937 fbp; Fructose-1,6-bisphosphatase, type I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DAQ1742_04304 glpX; Fructose-1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D DAQ1742_00166 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:daq00040]
D DAQ1742_01074 pemA; Pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D DAQ1742_04112 pelB; Pectate lyase B precursor K01728 pel; pectate lyase [EC:4.2.2.2]
D DAQ1742_04113 pelC; Pectate lyase C precursor K01728 pel; pectate lyase [EC:4.2.2.2]
D DAQ1742_01076 pelD; Pectate lyase precursor K01728 pel; pectate lyase [EC:4.2.2.2]
D DAQ1742_01077 pelA; Pectate lyase A precursor K01728 pel; pectate lyase [EC:4.2.2.2]
D DAQ1742_02459 pelW; Exopolygalacturonate lyase K01731 pelW; pectate disaccharide-lyase [EC:4.2.2.9]
D DAQ1742_04477 pelX; Exopolygalacturonate lyase K22994 pelX; pectate disaccharide-lyase [EC:4.2.2.9]
D DAQ1742_02481 ogl; Oligogalacturonate lyase K01730 ogl; oligogalacturonide lyase [EC:4.2.2.6]
D DAQ1742_02456 kdgF; Pectin degradation protein, catalyzes the ketonization of 4,5-unsaturated monouronates derived from pectin degradation K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D DAQ1742_02457 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D DAQ1742_02458 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D DAQ1742_00614 uxaC; Uronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D DAQ1742_00615 uxaB; Altronate oxidoreductase K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D DAQ1742_00616 uxaA; Altronate hydrolase K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D DAQ1742_00069 uxuA; Mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D DAQ1742_00782 uxuB; D-mannonate oxidoreductase K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D DAQ1742_02929 ugd; UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D DAQ1742_02928 galF; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DAQ1742_02258 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DAQ1742_04084 sgbH; 3-keto-L-gulonate 6-phosphate decarboxylase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D DAQ1742_04091 sgbU; L-xylulose 5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D DAQ1742_04085 ulaF; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D DAQ1742_02704 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D DAQ1742_04123 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D DAQ1742_02203 araA; L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D DAQ1742_02202 araB; Ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16]
D DAQ1742_00542 rhaB; Rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D DAQ1742_00540 rhaD; Rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
C 00051 Fructose and mannose metabolism [PATH:daq00051]
D DAQ1742_03258 mak; ROK family Glucokinase with ambiguous substrate specificity K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D DAQ1742_00442 scrK; Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D DAQ1742_02191 manA; Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D DAQ1742_00541 rhaA; L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14]
D DAQ1742_00542 rhaB; Rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D DAQ1742_00540 rhaD; Rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D DAQ1742_00166 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D DAQ1742_03937 fbp; Fructose-1,6-bisphosphatase, type I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DAQ1742_04304 glpX; Fructose-1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D DAQ1742_01996 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D DAQ1742_03920 fbaA; Fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DAQ1742_04308 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DAQ1742_01997 fruA; PTS system, fructose-specific IIB component / PTS system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D DAQ1742_01347 yfbT; Putative phosphatase YfbT K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
C 00052 Galactose metabolism [PATH:daq00052]
D DAQ1742_02952 galM; Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D DAQ1742_02951 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D DAQ1742_02950 galT; Galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D DAQ1742_02949 galE; UDP-N-acetylglucosamine 4-epimerase / UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DAQ1742_00761 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DAQ1742_02928 galF; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DAQ1742_02258 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DAQ1742_03005 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D DAQ1742_04414 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DAQ1742_01467 lacZ; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D DAQ1742_01191 ganB; Beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D DAQ1742_01543 rafA; Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D DAQ1742_00166 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D DAQ1742_00326 gatY; Tagatose 1,6-bisphosphate aldolase K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40]
D DAQ1742_00322 agaZ; Tagatose-6-phosphate kinase AgaZ K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D DAQ1742_00439 scrB; Sucrose-6-phosphate hydrolase (EC 3.2.1.B3) K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D DAQ1742_02817 lfaA; Alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D DAQ1742_00324 manX; PTS system, N-acetylgalactosamine-and galactosamine-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D DAQ1742_00327 agaV; PTS system, N-acetylgalactosamine-specific IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D DAQ1742_00328 PTS system, N-acetylgalactosamine-specific IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D DAQ1742_00329 agaC; PTS system, N-acetylgalactosamine-specific IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D DAQ1742_00325 manD; N-acetylglucosamine-6-phosphate deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25]
D DAQ1742_00323 agaS; tagatose-6-phosphate ketose/aldose isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:daq00053]
D DAQ1742_02929 ugd; UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D DAQ1742_02930 dTDP-glucose 4,6-dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D DAQ1742_04086 ulaC; Ascorbate-specific PTS system, EIIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D DAQ1742_04087 ulaA; Ascorbate-specific PTS system, EIIC component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D DAQ1742_02161 sgaT; Putative integral membrane protein, induced in presence of PGA K03475 ulaA; ascorbate PTS system EIIC component
D DAQ1742_04089 ulaG; Probable L-ascorbate-6-phosphate lactonase UlaG (L-ascorbate utilization protein G) K03476 ulaG; L-ascorbate 6-phosphate lactonase [EC:3.1.1.-]
D DAQ1742_04084 sgbH; 3-keto-L-gulonate 6-phosphate decarboxylase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D DAQ1742_04091 sgbU; L-xylulose 5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D DAQ1742_04085 ulaF; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D DAQ1742_02704 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D DAQ1742_03557 gudD; Glucarate dehydratase K01706 gudD; glucarate dehydratase [EC:4.2.1.40]
D DAQ1742_03556 garL; 2-dehydro-3-deoxyglucarate aldolase K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20]
D DAQ1742_03560 garD; D-galactarate dehydratase K01708 garD; galactarate dehydratase [EC:4.2.1.42]
C 00500 Starch and sucrose metabolism [PATH:daq00500]
D DAQ1742_00440 scrA; PTS system, sucrose-specific IIB component / PTS system, sucrose-specific IIC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D DAQ1742_00439 scrB; Sucrose-6-phosphate hydrolase (EC 3.2.1.B3) K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D DAQ1742_02817 lfaA; Alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D DAQ1742_02928 galF; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DAQ1742_02258 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DAQ1742_01610 bgxA; Beta-hexosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D DAQ1742_01663 bglX; Periplasmic beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D DAQ1742_00093 bcsA; Cellulose synthase catalytic subunit [UDP-forming] K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D DAQ1742_01422 cel5Z; endo-1,4-beta-glucanase precursor,Cellulase involved in cellulose degradation K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D DAQ1742_03638 celC; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D DAQ1742_03634 celA; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D DAQ1742_03636 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D DAQ1742_02752 arbB; phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D DAQ1742_03635 lfdP; Beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D DAQ1742_04444 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D DAQ1742_00486 bglA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D DAQ1742_04159 glgC; Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D DAQ1742_04158 glgA; Glycogen synthase, ADP-glucose transglucosylase K00703 glgA; starch synthase [EC:2.4.1.21]
D DAQ1742_04161 glgB; 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D DAQ1742_04152 malP; Maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D DAQ1742_04157 glgP; Glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D DAQ1742_04160 glgX; Glycogen debranching enzyme K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D DAQ1742_04151 malQ; 4-alpha-glucanotransferase (amylomaltase) K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D DAQ1742_00865 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D DAQ1742_03005 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D DAQ1742_04414 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DAQ1742_03992 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DAQ1742_03258 mak; ROK family Glucokinase with ambiguous substrate specificity K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D DAQ1742_00442 scrK; Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:daq00520]
D DAQ1742_02827 nagZ; Beta N-acetyl-glucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D DAQ1742_00865 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D DAQ1742_03015 nagE; PTS system, N-acetylglucosamine-specific IIA component / PTS system, N-acetylglucosamine-specific IIB component / PTS system, N-acetylglucosamine-specific IIC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D DAQ1742_02808 nagK; N-acetyl-D-glucosamine kinase K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D DAQ1742_03018 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D DAQ1742_03017 nagB; Glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D DAQ1742_03769 N-acetylglucosamine kinase of eukaryotic type K18676 gspK; glucosamine kinase [EC:2.7.1.8]
D DAQ1742_03768 Glucosamine kinase GpsK K18676 gspK; glucosamine kinase [EC:2.7.1.8]
D DAQ1742_03258 mak; ROK family Glucokinase with ambiguous substrate specificity K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D DAQ1742_00442 scrK; Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D DAQ1742_04474 glmS; Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DAQ1742_00691 glmM; Phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D DAQ1742_04475 glmU; N-acetylglucosamine-1-phosphate uridyltransferase / Glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D DAQ1742_01064 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D DAQ1742_02721 anmK; Anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D DAQ1742_00394 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D DAQ1742_00277 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D DAQ1742_04243 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D DAQ1742_04242 rffD; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D DAQ1742_04456 arnA; UDP-glucuronic acid oxidase (UDP-4-keto-hexauronic acid decarboxylating) / UDP-4-amino-4-deoxy-L-arabinose formyltransferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D DAQ1742_04458 arnB; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D DAQ1742_04457 arnC; Polymyxin resistance protein ArnC, glycosyl transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D DAQ1742_04455 arnD; undecaprenyl phosphate-alpha-L-Ara4FN (4-deoxy-4-formamido-L-arabinose) deformylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D DAQ1742_01592 Beta-xylosidase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D DAQ1742_02833 ptsG; PTS system, glucose-specific IIB component / PTS system, glucose-specific IIC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D DAQ1742_04414 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DAQ1742_03005 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D DAQ1742_02928 galF; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DAQ1742_02258 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DAQ1742_02929 ugd; UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D DAQ1742_02951 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D DAQ1742_02950 galT; Galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D DAQ1742_02949 galE; UDP-N-acetylglucosamine 4-epimerase / UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DAQ1742_00761 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DAQ1742_02930 dTDP-glucose 4,6-dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D DAQ1742_03992 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DAQ1742_02191 manA; Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D DAQ1742_04159 glgC; Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:daq00620]
D DAQ1742_00774 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DAQ1742_00787 nifJ; Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D DAQ1742_03791 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D DAQ1742_03790 aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DAQ1742_03789 lpd; Dihydrolipoamide dehydrogenase / Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DAQ1742_02078 pflB; Pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D DAQ1742_02254 adhE; Alcohol dehydrogenase; Acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D DAQ1742_00934 eutE; Acetaldehyde dehydrogenase, ethanolamine utilization cluster K04021 eutE; aldehyde dehydrogenase
D DAQ1742_02520 yiaY; Alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D DAQ1742_02012 adhC; Alcohol dehydrogenase class III; Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DAQ1742_01343 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DAQ1742_01342 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D DAQ1742_02756 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DAQ1742_02297 pykA; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DAQ1742_03309 accA; Acetyl-coenzyme A carboxyl transferase alpha chain K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DAQ1742_00348 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DAQ1742_00347 accC; Biotin carboxylase of acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DAQ1742_01325 accD; Acetyl-coenzyme A carboxyl transferase beta chain K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DAQ1742_01145 yccX; Acylphosphate phosphohydrolase, putative K01512 acyP; acylphosphatase [EC:3.6.1.7]
D DAQ1742_04353 aldB; Aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D DAQ1742_02603 ldhA; D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D DAQ1742_02726 gloA; Lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D DAQ1742_02795 ycbL; predicted metal-binding enzyme. Glyoxalase II homolog, function unknown K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D DAQ1742_00987 gloB; Hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D DAQ1742_04375 tkrA; Glyoxylate reductase / Hydroxypyruvate reductase / 2-ketoaldonate reductase, broad specificity K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D DAQ1742_01605 sfcA; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D DAQ1742_00845 maeB; NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D DAQ1742_00676 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DAQ1742_00878 fumA; Fumarate hydratase class I, aerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D DAQ1742_03982 frdA; Succinate dehydrogenase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DAQ1742_03983 frdB; Succinate dehydrogenase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DAQ1742_03984 frdC; Fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D DAQ1742_03985 frdD; Fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D DAQ1742_00248 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D DAQ1742_04140 pck; Phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D DAQ1742_02765 ppsA; Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D DAQ1742_04005 aceB; Malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D DAQ1742_03835 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:daq00630]
D DAQ1742_04004 aceA; Isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D DAQ1742_00774 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DAQ1742_04005 aceB; Malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D DAQ1742_00676 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DAQ1742_02989 gltA; Citrate synthase (si) K01647 CS; citrate synthase [EC:2.3.3.1]
D DAQ1742_03785 acnB; Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D DAQ1742_01536 Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D DAQ1742_00941 katE; Catalase K03781 katE; catalase [EC:1.11.1.6]
D DAQ1742_04375 tkrA; Glyoxylate reductase / Hydroxypyruvate reductase / 2-ketoaldonate reductase, broad specificity K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D DAQ1742_04344 indB; Phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D DAQ1742_04122 gph; Phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D DAQ1742_00821 haloacid dehalogenase-like hydrolase, putative K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D DAQ1742_00030 glnA; Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DAQ1742_01079 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DAQ1742_00737 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D DAQ1742_00735 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D DAQ1742_03789 lpd; Dihydrolipoamide dehydrogenase / Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DAQ1742_00736 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D DAQ1742_03555 garR; 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D DAQ1742_03554 garK; Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D DAQ1742_00734 fucO; Lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
D DAQ1742_00126 ttdA; L(+)-tartrate dehydratase alpha subunit K03779 ttdA; L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32]
D DAQ1742_00125 ttdB; L(+)-tartrate dehydratase beta subunit K03780 ttdB; L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32]
D DAQ1742_00894 dmlA; Tartrate dehydrogenase @ Tartrate decarboxylase @ D-malic enzyme K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D DAQ1742_02294 kdgA; 2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D DAQ1742_01388 fdoG; Formate dehydrogenase O alpha subunit @ selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D DAQ1742_01389 fdoH; Formate dehydrogenase O beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D DAQ1742_01390 fdoI; Formate dehydrogenase O gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D DAQ1742_02263 purU; Formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D DAQ1742_01172 N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:daq00640]
D DAQ1742_00774 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DAQ1742_01343 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DAQ1742_01342 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D DAQ1742_03789 lpd; Dihydrolipoamide dehydrogenase / Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DAQ1742_02078 pflB; Pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D DAQ1742_00353 acuI; YhdH, a putative quinone oxidoreductase. AcuI(YdhH) is proposed to have a role in endogenous and/or exogenous acrylate detoxification K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D DAQ1742_00267 fadB; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D DAQ1742_01302 fadJ; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DAQ1742_03309 accA; Acetyl-coenzyme A carboxyl transferase alpha chain K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DAQ1742_00348 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DAQ1742_00347 accC; Biotin carboxylase of acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DAQ1742_01325 accD; Acetyl-coenzyme A carboxyl transferase beta chain K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DAQ1742_02510 goaG; Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D DAQ1742_02982 sucC; Succinyl-CoA ligase [ADP-forming] beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DAQ1742_02981 sucD; Succinyl-CoA ligase [ADP-forming] alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DAQ1742_00798 iolA; Methylmalonate-semialdehyde dehydrogenase [inositol] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D DAQ1742_03785 acnB; Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D DAQ1742_01536 Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D DAQ1742_01141 mgsA; Methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D DAQ1742_00431 yqhD; Aldehyde reductase, NADPH-dependent; protects against lipid oxidation and glyoxal toxicity K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
D DAQ1742_00734 fucO; Lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
C 00650 Butanoate metabolism [PATH:daq00650]
D DAQ1742_00267 fadB; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D DAQ1742_01302 fadJ; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DAQ1742_02254 adhE; Alcohol dehydrogenase; Acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D DAQ1742_00894 dmlA; Tartrate dehydrogenase @ Tartrate decarboxylase @ D-malic enzyme K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D DAQ1742_02986 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DAQ1742_02985 sdhB; Succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DAQ1742_02988 sdhC; Succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D DAQ1742_02987 sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D DAQ1742_03982 frdA; Succinate dehydrogenase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DAQ1742_03983 frdB; Succinate dehydrogenase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DAQ1742_03984 frdC; Fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D DAQ1742_03985 frdD; Fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D DAQ1742_02510 goaG; Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D DAQ1742_02509 Aldehyde dehydrogenase B K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DAQ1742_02078 pflB; Pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D DAQ1742_00787 nifJ; Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D DAQ1742_03832 ilvI; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_03849 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_04267 ilvG; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_00733 budB; Acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_03831 ilvH; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DAQ1742_03850 ilvN; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DAQ1742_04266 ilvM; Acetolactate synthase small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D DAQ1742_00732 budA; Alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D DAQ1742_00942 budC; 2,3-butanediol dehydrogenase, S-alcohol forming, (R)-acetoin-specific / Acetoin (diacetyl) reductase K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
C 00660 C5-Branched dibasic acid metabolism [PATH:daq00660]
D DAQ1742_03832 ilvI; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_03849 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_04267 ilvG; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_00733 budB; Acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_03831 ilvH; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DAQ1742_03850 ilvN; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DAQ1742_04266 ilvM; Acetolactate synthase small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D DAQ1742_00732 budA; Alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D DAQ1742_02982 sucC; Succinyl-CoA ligase [ADP-forming] beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DAQ1742_02981 sucD; Succinyl-CoA ligase [ADP-forming] alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DAQ1742_03837 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D DAQ1742_03838 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D DAQ1742_03836 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:daq00562]
D DAQ1742_01088 suhB; Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D DAQ1742_00052 Phytase, predicted histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D DAQ1742_00803 idhA; Myo-inositol 2-dehydrogenase 1 K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D DAQ1742_00809 mocC; Inosose dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D DAQ1742_00799 iolD; Epi-inositol hydrolase K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D DAQ1742_00810 iolB; 5-deoxy-glucuronate isomerase K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D DAQ1742_00808 5-keto-2-deoxygluconokinase / uncharacterized domain K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D DAQ1742_00798 iolA; Methylmalonate-semialdehyde dehydrogenase [inositol] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D DAQ1742_04308 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:daq00190]
D DAQ1742_01354 nuoA; NADH ubiquinone oxidoreductase chain A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D DAQ1742_01355 nuoB; NADH-ubiquinone oxidoreductase chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D DAQ1742_01356 nuoC; NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone oxidoreductase chain D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D DAQ1742_01357 nuoE; NADH-ubiquinone oxidoreductase chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D DAQ1742_01358 nuoF; NADH-ubiquinone oxidoreductase chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D DAQ1742_01359 nuoG; NADH-ubiquinone oxidoreductase chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D DAQ1742_01360 nuoH; NADH-ubiquinone oxidoreductase chain H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D DAQ1742_01361 nuoI; NADH-ubiquinone oxidoreductase chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D DAQ1742_01362 nuoJ; NADH-ubiquinone oxidoreductase chain J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D DAQ1742_01363 nuoK; NADH-ubiquinone oxidoreductase chain K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D DAQ1742_01364 nuoL; NADH-ubiquinone oxidoreductase chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D DAQ1742_01365 nuoM; NADH-ubiquinone oxidoreductase chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D DAQ1742_01366 nuoN; NADH-ubiquinone oxidoreductase chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D DAQ1742_02825 ndh; respiratory NADH dehydrogenase 2/cupric reductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D DAQ1742_02986 sdhA; Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DAQ1742_02985 sdhB; Succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DAQ1742_02988 sdhC; Succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D DAQ1742_02987 sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D DAQ1742_03982 frdA; Succinate dehydrogenase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DAQ1742_03983 frdB; Succinate dehydrogenase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DAQ1742_03984 frdC; Fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D DAQ1742_03985 frdD; Fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D DAQ1742_03222 cyoE; Heme O synthase, protoheme IX farnesyltransferase COX10-CtaB K02257 COX10; heme o synthase [EC:2.5.1.141]
D DAQ1742_03221 cyoD; Cytochrome O ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D DAQ1742_03220 cyoC; Cytochrome O ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D DAQ1742_03219 cyoB; Cytochrome O ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D DAQ1742_03218 cyoA; Cytochrome O ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D DAQ1742_02979 cydA; Cytochrome d ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D DAQ1742_01629 putative Cytochrome bd2, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D DAQ1742_02978 cydB; Cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D DAQ1742_01630 putative Cytochrome bd2, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D DAQ1742_02977 cydX; cytochrome d-I terminal oxidase-CydX subunit K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D DAQ1742_04481 atpA; ATP synthase alpha chain K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D DAQ1742_04479 atpD; ATP synthase beta chain K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D DAQ1742_04480 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D DAQ1742_04482 atpH; ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D DAQ1742_04478 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D DAQ1742_04485 atpB; ATP synthase F0 sector subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D DAQ1742_04483 atpF; ATP synthase F0 sector subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D DAQ1742_04484 atpE; ATP synthase F0 sector subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D DAQ1742_03581 ppa; Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D DAQ1742_01154 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:daq00680]
D DAQ1742_02012 adhC; Alcohol dehydrogenase class III; Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DAQ1742_02011 yeiG; S-lactoylglutathione hydrolase may be involved in methylglyoxal detoxification in the cytoplasm K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D DAQ1742_01388 fdoG; Formate dehydrogenase O alpha subunit @ selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D DAQ1742_01389 fdoH; Formate dehydrogenase O beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D DAQ1742_01390 fdoI; Formate dehydrogenase O gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D DAQ1742_01476 fdhF; Formate dehydrogenase H @ selenocysteine-containing K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-]
D DAQ1742_01079 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DAQ1742_03548 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DAQ1742_00248 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D DAQ1742_00676 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DAQ1742_03920 fbaA; Fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DAQ1742_03937 fbp; Fructose-1,6-bisphosphatase, type I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DAQ1742_04304 glpX; Fructose-1,6-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D DAQ1742_00166 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D DAQ1742_01343 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DAQ1742_01342 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D DAQ1742_00774 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DAQ1742_02765 ppsA; Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D DAQ1742_02958 gpmA; Phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DAQ1742_03905 ytjC; Phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DAQ1742_03913 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DAQ1742_03345 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DAQ1742_02081 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DAQ1742_00558 serB; Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:daq00910]
D DAQ1742_02527 narK; Nitrate/nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D DAQ1742_02524 narG; Respiratory nitrate reductase alpha chain K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D DAQ1742_02523 narH; Respiratory nitrate reductase beta chain K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D DAQ1742_02521 narI; Respiratory nitrate reductase gamma chain K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D DAQ1742_01397 nasD; Nitrite reductase [NAD(P)H] large subunit K00361 nasB; nitrite reductase [NAD(P)H] [EC:1.7.1.4]
D DAQ1742_02054 hcp; Hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D DAQ1742_00030 glnA; Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DAQ1742_00404 gltB; Glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D DAQ1742_00403 gltD; Glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D DAQ1742_01001 can; Carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:daq00920]
D DAQ1742_01025 sbp; Sulfate and thiosulfate binding protein CysP K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DAQ1742_01026 cysU; Sulfate transport system permease protein CysU K02046 cysU; sulfate/thiosulfate transport system permease protein
D DAQ1742_01027 cysW; Sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D DAQ1742_01028 cysA; Sulfate and thiosulfate import ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D DAQ1742_02779 ssuA; Alkanesulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DAQ1742_01552 atsR_2; Alkanesulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DAQ1742_01570 astR_1; Alkanesulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DAQ1742_02781 ssuC; Alkanesulfonates transport system permease protein K15554 ssuC; sulfonate transport system permease protein
D DAQ1742_01548 astB_2; Alkanesulfonates transport system permease protein K15554 ssuC; sulfonate transport system permease protein
D DAQ1742_01569 astB_1; Alkanesulfonates transport system permease protein K15554 ssuC; sulfonate transport system permease protein
D DAQ1742_02782 ssuB; Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D DAQ1742_01568 astC; Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D DAQ1742_02780 ssuD; Alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D DAQ1742_02778 ssuE; FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D DAQ1742_03532 cysN; Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D DAQ1742_03533 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DAQ1742_03594 cysQ; PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D DAQ1742_03535 cysH; Phosphoadenylyl-sulfate reductase [thioredoxin] K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D DAQ1742_03537 cysJ; Sulfite reductase [NADPH] flavoprotein alpha-component K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D DAQ1742_03536 cysI; Sulfite reductase [NADPH] hemoprotein beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D DAQ1742_01101 sseA; 3-mercaptopyruvate:cyanide sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D DAQ1742_04155 glpE; Thiosulfate sulfurtransferase GlpE K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D DAQ1742_02337 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DAQ1742_00241 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DAQ1742_03153 Cysteine synthase B K01738 cysK; cysteine synthase [EC:2.5.1.47]
D DAQ1742_00869 cysK; Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D DAQ1742_04006 metA; Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D DAQ1742_04290 metB; Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:daq00061]
D DAQ1742_03309 accA; Acetyl-coenzyme A carboxyl transferase alpha chain K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DAQ1742_00348 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DAQ1742_00347 accC; Biotin carboxylase of acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DAQ1742_01325 accD; Acetyl-coenzyme A carboxyl transferase beta chain K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DAQ1742_02841 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
D DAQ1742_03417 hypothetical protein K02078 acpP; acyl carrier protein
D DAQ1742_02843 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D DAQ1742_04326 vfmT; 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DAQ1742_04329 vfmW; 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DAQ1742_02844 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DAQ1742_01319 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase, KASI K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D DAQ1742_01784 3-oxoacyl-[acyl-carrier-protein] synthase, KASII K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DAQ1742_02840 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase, KASII K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DAQ1742_03403 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II, putative K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DAQ1742_02889 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02890 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_01804 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_01806 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02421 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02842 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02871 fabA; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D DAQ1742_03314 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D DAQ1742_02699 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DAQ1742_03833 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_02437 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_04390 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_04403 O-succinylbenzoic acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_02886 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:daq00071]
D DAQ1742_00266 fadA; 3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D DAQ1742_01301 fadI; 3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D DAQ1742_00267 fadB; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D DAQ1742_01302 fadJ; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DAQ1742_04324 vfmR; Butyryl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D DAQ1742_04327 vfmU; Butyryl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D DAQ1742_03464 fadE; Butyryl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D DAQ1742_03833 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_02437 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_04390 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_04403 O-succinylbenzoic acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_02886 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_03630 aas; 2-acylglycerophosphoethanolamine acyltransferase / Acyl-[acyl-carrier-protein] synthetase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D DAQ1742_02012 adhC; Alcohol dehydrogenase class III; Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DAQ1742_02254 adhE; Alcohol dehydrogenase; Acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D DAQ1742_02520 yiaY; Alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:daq00561]
D DAQ1742_03554 garK; Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D DAQ1742_04302 glpK; Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D DAQ1742_00598 plsB; Glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D DAQ1742_02845 plsX; Phosphate:acyl-ACP acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D DAQ1742_03579 plsY; Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D DAQ1742_00428 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D DAQ1742_00599 dgkA; Diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D DAQ1742_01543 rafA; Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:daq00564]
D DAQ1742_00239 gpsA; glycerol-3-phosphate dehydrogenase (NAD+), biosynthesis of glycerol phosphate which is the precursor of phospholipid K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D DAQ1742_04156 glpD; Aerobic glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D DAQ1742_04184 glpA; Anaerobic glycerol-3-phosphate dehydrogenase subunit A . Large subunit. FAD/NAP(P)-binding. K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D DAQ1742_04183 glpB; Anaerobic glycerol-3-phosphate dehydrogenase subunit B . Membrane anchor subunit. K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D DAQ1742_04182 glpC; Anaerobic glycerol-3-phosphate dehydrogenase subunit C K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D DAQ1742_00598 plsB; Glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D DAQ1742_03579 plsY; Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D DAQ1742_00428 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D DAQ1742_00599 dgkA; Diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D DAQ1742_04192 pldA; Phospholipase A1 precursor,; Outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D DAQ1742_04188 pldB; Lysophospholipase L2 K01048 pldB; lysophospholipase [EC:3.1.1.5]
D DAQ1742_04186 glpQ; Glycerophosphoryl diester phosphodiesterase, periplasmic K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D DAQ1742_00142 ugpQ; Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D DAQ1742_03630 aas; 2-acylglycerophosphoethanolamine acyltransferase / Acyl-[acyl-carrier-protein] synthetase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D DAQ1742_01571 cdh; CDP-diacylglycerol pyrophosphatase K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26]
D DAQ1742_03319 cdsA; Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D DAQ1742_03508 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D DAQ1742_03977 psd; Phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D DAQ1742_01874 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D DAQ1742_02712 pgpB; Phosphatidylglycerophosphatase B K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
D DAQ1742_03381 Phosphoserine phosphatase K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D DAQ1742_02244 cls; Cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D DAQ1742_01642 clsB; Cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:daq00565]
D DAQ1742_04192 pldA; Phospholipase A1 precursor,; Outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism [PATH:daq00600]
D DAQ1742_01467 lacZ; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D DAQ1742_01543 rafA; Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00590 Arachidonic acid metabolism
D DAQ1742_04192 pldA; Phospholipase A1 precursor,; Outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D DAQ1742_04192 pldA; Phospholipase A1 precursor,; Outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:daq00592]
D DAQ1742_04192 pldA; Phospholipase A1 precursor,; Outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D DAQ1742_00266 fadA; 3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D DAQ1742_01301 fadI; 3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:daq01040]
D DAQ1742_03095 tesA; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D DAQ1742_03147 tesB; Acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D DAQ1742_02238 yciA; Acyl-CoA thioesterase YciA, involved in membrane biogenesis K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:daq00230]
D DAQ1742_00419 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D DAQ1742_04135 nudE; ADP-ribose diphosphatase.ADP-ribose hydrolases in general act as protective agents against excessive intracellular accumulation of ADP-ribose, as high intracellular levels of ADP-ribose can be damaging to the cell K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D DAQ1742_00718 deoB; Phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D DAQ1742_03005 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D DAQ1742_02138 prsA; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D DAQ1742_01331 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D DAQ1742_00313 purD; Phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D DAQ1742_03080 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D DAQ1742_02292 purT; Phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D DAQ1742_01067 purL; Phosphoribosylformylglycinamidine synthase, synthetase subunit / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D DAQ1742_03079 purM; Phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D DAQ1742_01162 purK; Phosphoribosylaminoimidazole carboxylase ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D DAQ1742_01163 purE; Phosphoribosylaminoimidazole carboxylase catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D DAQ1742_03068 purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D DAQ1742_04227 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D DAQ1742_02490 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D DAQ1742_00314 purH; IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D DAQ1742_03134 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D DAQ1742_03125 ushA; UDP-sugar hydrolase; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D DAQ1742_04137 yrfG; FIG001957: putative hydrolase K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D DAQ1742_00719 deoD; Purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D DAQ1742_03263 yaiE; Cytoplasmic protein YaiE K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D DAQ1742_00976 yfiH; COG1496: Uncharacterized conserved protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D DAQ1742_01000 hpt; Hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D DAQ1742_01116 guaB; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D DAQ1742_01104 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D DAQ1742_03906 yjjX; Inosine/xanthosine triphosphatase K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D DAQ1742_03625 rdgB; Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D DAQ1742_03456 gpt; Xanthine-guanine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D DAQ1742_01117 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D DAQ1742_01385 GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D DAQ1742_02577 guaD; Guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D DAQ1742_00042 gmk; Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D DAQ1742_03114 nrdA; Ribonucleotide reductase of class Ia (aerobic), alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D DAQ1742_03115 nrdB; Ribonucleotide reductase of class Ia (aerobic), beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D DAQ1742_00463 nrdD; Ribonucleotide reductase of class III (anaerobic), large subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D DAQ1742_01022 dgt; Deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D DAQ1742_01349 yfbR; Nucleotidase YfbR, HD superfamily K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D DAQ1742_00040 spoT; GTP pyrophosphokinase, (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D DAQ1742_04250 gppA; Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D DAQ1742_01153 ppx; Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D DAQ1742_03551 relA; GTP pyrophosphokinase, (p)ppGpp synthetase I K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D DAQ1742_04205 cyaA; Adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D DAQ1742_01655 cyaB; Adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D DAQ1742_03939 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D DAQ1742_02193 add; Adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D DAQ1742_02917 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D DAQ1742_03335 yqdH; Decarboxylase family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D DAQ1742_03595 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D DAQ1742_03129 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D DAQ1742_03550 mazG; Nucleoside triphosphate pyrophosphohydrolase MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D DAQ1742_00421 cpdA; 3',5'-cyclic-nucleotide phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D DAQ1742_03862 apaH; Bis(5'-nucleosyl)-tetraphosphatase, symmetrical K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D DAQ1742_03532 cysN; Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D DAQ1742_03533 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DAQ1742_00577 Uricase K16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97]
D DAQ1742_03485 hyuE; Hydantoin racemase K16841 hpxA; allantoin racemase [EC:5.1.99.3]
D DAQ1742_03484 cda; Putative chitin deacetylase K16842 hpxB; allantoinase [EC:3.5.2.5]
D DAQ1742_03471 allC; N-carbamoyl-L-amino acid hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D DAQ1742_03472 pucG; Serine--pyruvate aminotransferase / L-alanine:glyoxylate aminotransferase K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D DAQ1742_03480 atzE; Biuret hydrolase K22601 hpxY; oxamate carbamoyltransferase [EC:2.1.3.5]
D DAQ1742_03478 Gamma-glutamyltranspeptidase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126]
C 00240 Pyrimidine metabolism [PATH:daq00240]
D DAQ1742_03869 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D DAQ1742_03870 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D DAQ1742_00483 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D DAQ1742_00482 pyrI; Aspartate carbamoyltransferase regulatory chain (PyrI) K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D DAQ1742_02852 pyrC; Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D DAQ1742_02776 pyrD; Dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D DAQ1742_00211 pyrE; Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D DAQ1742_02708 pyrF; Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D DAQ1742_03323 pyrH; Uridine monophosphate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D DAQ1742_01104 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D DAQ1742_03550 mazG; Nucleoside triphosphate pyrophosphohydrolase MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D DAQ1742_00358 yhdE; homologous to the B. subtilus Maf protein, a polar-localized, cell division-associated protein that inhibits septum formation when overproduced K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D DAQ1742_03549 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D DAQ1742_02083 cmk; Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D DAQ1742_02934 udk; Uridine kinase [C1] K00876 udk; uridine kinase [EC:2.7.1.48]
D DAQ1742_03125 ushA; UDP-sugar hydrolase; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D DAQ1742_00245 udp; Uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D DAQ1742_03263 yaiE; Cytoplasmic protein YaiE K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D DAQ1742_03078 upp; Uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D DAQ1742_03595 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D DAQ1742_04345 indA; Indigoidine biosynthesis protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D DAQ1742_03873 rihC; Inosine-uridine preferring nucleoside hydrolase K12700 rihC; non-specific riboncleoside hydrolase [EC:3.2.2.-]
D DAQ1742_03335 yqdH; Decarboxylase family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D DAQ1742_01606 cdd; Cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D DAQ1742_03617 codA; Cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D DAQ1742_00463 nrdD; Ribonucleotide reductase of class III (anaerobic), large subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D DAQ1742_02933 dcd; Deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D DAQ1742_03114 nrdA; Ribonucleotide reductase of class Ia (aerobic), alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D DAQ1742_03115 nrdB; Ribonucleotide reductase of class Ia (aerobic), beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D DAQ1742_01349 yfbR; Nucleotidase YfbR, HD superfamily K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D DAQ1742_02836 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D DAQ1742_00213 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D DAQ1742_00717 deoA; Thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D DAQ1742_02256 tdk; Thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D DAQ1742_03358 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D DAQ1742_04385 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D DAQ1742_04384 pydA; Dihydropyrimidine dehydrogenase [NADP+] K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D DAQ1742_04383 dht; Dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D DAQ1742_04382 Beta-ureidopropionase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D DAQ1742_02184 ydfG; NADP-dependent L-serine/L-allo-threonine dehydrogenase ydfG K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:daq00250]
D DAQ1742_02792 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DAQ1742_01044 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D DAQ1742_01469 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D DAQ1742_02271 ansA; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D DAQ1742_03265 ansB; L-asparaginase, periplasmic enzyme, AnsB can provide an anaerobic electron acceptor and allows growth on asparagine and glycerol anaerobically (Yogitha, 2013). K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D DAQ1742_00199 iaaA; Glutathione utilization, isoAsp aminopeptidase, cleaves isoAsp-X dipeptides; Ntn hydrolase; weak L-asparaginase activity in vitro K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D DAQ1742_03020 asnB; Asparagine synthetase [glutamine-hydrolyzing] K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D DAQ1742_00824 asnO; Asparagine synthetase [glutamine-hydrolyzing] K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D DAQ1742_01351 alaA; Aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D DAQ1742_00592 aspA; Aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D DAQ1742_04349 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D DAQ1742_00252 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D DAQ1742_03939 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D DAQ1742_04227 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D DAQ1742_02490 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D DAQ1742_00483 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D DAQ1742_00482 pyrI; Aspartate carbamoyltransferase regulatory chain (PyrI) K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D DAQ1742_02510 goaG; Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D DAQ1742_02509 Aldehyde dehydrogenase B K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DAQ1742_00404 gltB; Glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D DAQ1742_00403 gltD; Glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D DAQ1742_04257 putA; Proline dehydrogenase (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase/PutA represses transcription of the put regulon K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D DAQ1742_00030 glnA; Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DAQ1742_03869 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D DAQ1742_03870 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D DAQ1742_04474 glmS; Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DAQ1742_01331 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:daq00260]
D DAQ1742_03993 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DAQ1742_03898 thrA; Aspartokinase / Homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D DAQ1742_04289 metL; Aspartokinase / Homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D DAQ1742_04169 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DAQ1742_03897 thrB; Homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D DAQ1742_03896 thrC; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D DAQ1742_01079 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DAQ1742_04375 tkrA; Glyoxylate reductase / Hydroxypyruvate reductase / 2-ketoaldonate reductase, broad specificity K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D DAQ1742_03554 garK; Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D DAQ1742_02958 gpmA; Phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DAQ1742_03905 ytjC; Phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DAQ1742_03913 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DAQ1742_03345 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DAQ1742_02081 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DAQ1742_00558 serB; Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D DAQ1742_02184 ydfG; NADP-dependent L-serine/L-allo-threonine dehydrogenase ydfG K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D DAQ1742_00233 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D DAQ1742_03418 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D DAQ1742_00234 tdh; L-threonine 3-dehydrogenase, NAD(P)-binding K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D DAQ1742_00737 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D DAQ1742_00735 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D DAQ1742_03789 lpd; Dihydrolipoamide dehydrogenase / Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DAQ1742_00736 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D DAQ1742_03508 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D DAQ1742_02409 Cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D DAQ1742_02410 Cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D DAQ1742_02447 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D DAQ1742_01160 sdaB; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D DAQ1742_04263 ilvA; Threonine dehydratase biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D DAQ1742_03425 L-serine dehydratase, (PLP)-dependent @ Threonine dehydratase biosynthetic K17989 SDS; L-serine/L-threonine ammonia-lyase [EC:4.3.1.17 4.3.1.19]
D DAQ1742_02232 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D DAQ1742_02231 trpB; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D DAQ1742_01508 acsF; Achromobactin biosynthesis protein AcsF; Diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
C 00270 Cysteine and methionine metabolism [PATH:daq00270]
D DAQ1742_02337 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DAQ1742_00241 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DAQ1742_03153 Cysteine synthase B K01738 cysK; cysteine synthase [EC:2.5.1.47]
D DAQ1742_00869 cysK; Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D DAQ1742_02410 Cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D DAQ1742_00435 metC; Cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D DAQ1742_02409 Cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D DAQ1742_04000 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DAQ1742_02516 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D DAQ1742_03266 Methionine synthase II (cobalamin-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D DAQ1742_00243 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D DAQ1742_03929 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D DAQ1742_00992 speD; S-adenosylmethionine decarboxylase proenzyme, prokaryotic class 1A K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D DAQ1742_00993 speE; Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D DAQ1742_04313 Homoserine lactone synthase YpeI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D DAQ1742_01021 pfs; 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D DAQ1742_03465 mtnK; 5-methylthioribose kinase K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100]
D DAQ1742_00976 yfiH; COG1496: Uncharacterized conserved protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D DAQ1742_03466 mtnA; Methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D DAQ1742_03469 mtnB; Methylthioribulose-1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
D DAQ1742_03468 mtnC; 2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77]
D DAQ1742_03467 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]
D DAQ1742_00569 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]
D DAQ1742_00825 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]
D DAQ1742_03661 tyrB; Biosynthetic Aromatic amino acid aminotransferase alpha K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D DAQ1742_02534 yebR; Free methionine-(R)-sulfoxide reductase, contains GAF domain K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D DAQ1742_01909 macromolecule metabolism; macromolecule synthesis, modification; dna-replication, repair, restr./modif. K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DAQ1742_02641 Modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DAQ1742_00960 luxS; S-ribosylhomocysteine lyase / Autoinducer-2 production protein LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D DAQ1742_03993 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DAQ1742_03898 thrA; Aspartokinase / Homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D DAQ1742_04289 metL; Aspartokinase / Homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D DAQ1742_04169 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DAQ1742_04006 metA; Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D DAQ1742_04290 metB; Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D DAQ1742_01036 O-acetylhomoserine sulfhydrylase / O-succinylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D DAQ1742_02416 Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DAQ1742_04265 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DAQ1742_00959 gshA; Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D DAQ1742_03934 gshB; Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D DAQ1742_02792 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DAQ1742_01101 sseA; 3-mercaptopyruvate:cyanide sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D DAQ1742_00676 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DAQ1742_02447 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D DAQ1742_01160 sdaB; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D DAQ1742_03425 L-serine dehydratase, (PLP)-dependent @ Threonine dehydratase biosynthetic K17989 SDS; L-serine/L-threonine ammonia-lyase [EC:4.3.1.17 4.3.1.19]
D DAQ1742_02336 Cysteine synthase K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D DAQ1742_00860 cysM; Cysteine synthase K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D DAQ1742_03913 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DAQ1742_03345 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DAQ1742_02081 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:daq00280]
D DAQ1742_02416 Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DAQ1742_04265 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DAQ1742_03789 lpd; Dihydrolipoamide dehydrogenase / Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DAQ1742_04324 vfmR; Butyryl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D DAQ1742_04327 vfmU; Butyryl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D DAQ1742_00267 fadB; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D DAQ1742_01302 fadJ; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DAQ1742_00266 fadA; 3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D DAQ1742_01301 fadI; 3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D DAQ1742_01828 2-hydroxy-3-oxopropionate reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D DAQ1742_01862 2-hydroxy-3-oxopropionate reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D DAQ1742_00798 iolA; Methylmalonate-semialdehyde dehydrogenase [inositol] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:daq00290]
D DAQ1742_04263 ilvA; Threonine dehydratase biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D DAQ1742_03425 L-serine dehydratase, (PLP)-dependent @ Threonine dehydratase biosynthetic K17989 SDS; L-serine/L-threonine ammonia-lyase [EC:4.3.1.17 4.3.1.19]
D DAQ1742_03837 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D DAQ1742_03838 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D DAQ1742_03836 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D DAQ1742_03832 ilvI; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_03849 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_04267 ilvG; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_00733 budB; Acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_03831 ilvH; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DAQ1742_03850 ilvN; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DAQ1742_04266 ilvM; Acetolactate synthase small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D DAQ1742_04259 ilvC; Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D DAQ1742_04264 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D DAQ1742_02416 Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DAQ1742_04265 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DAQ1742_04380 avtA; Valine--pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D DAQ1742_01351 alaA; Aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D DAQ1742_03835 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:daq00300]
D DAQ1742_03993 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DAQ1742_03898 thrA; Aspartokinase / Homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D DAQ1742_04289 metL; Aspartokinase / Homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D DAQ1742_04169 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DAQ1742_03070 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DAQ1742_03778 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DAQ1742_02417 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DAQ1742_00818 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DAQ1742_03872 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D DAQ1742_03329 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D DAQ1742_04093 argD; Acetylornithine aminotransferase / N-succinyl-L,L-diaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D DAQ1742_03062 dapE; N-succinyl-L,L-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D DAQ1742_04202 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D DAQ1742_04316 vfmK; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D DAQ1742_03640 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D DAQ1742_01512 acsE; Achromobactin biosynthesis protein AcsE, Orn/DAP/Arg decarboxylase family K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D DAQ1742_03823 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D DAQ1742_03822 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:daq00310]
D DAQ1742_02983 sucB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DAQ1742_03789 lpd; Dihydrolipoamide dehydrogenase / Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DAQ1742_00267 fadB; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D DAQ1742_01302 fadJ; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DAQ1742_01506 patA; Putrescine aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82]
D DAQ1742_01505 patD; 4-aminobutyraldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19]
D DAQ1742_02509 Aldehyde dehydrogenase B K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DAQ1742_02762 ydiJ; predicted FAD-linked oxidoreductase K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
D DAQ1742_01746 D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DAQ1742_01234 dat; D-alanine aminotransferase. Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha-keto acid in the first half-reaction. The second-half reaction is the reverse of the first, transferring the amino group from the pyridoxamine to a second alpha-keto acid to form the product D-amino acid via a ping-pong mechanism. This is an important process in the formation of D-alanine and D-glutamate, which are essential bacterial cell wall components K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00220 Arginine biosynthesis [PATH:daq00220]
D DAQ1742_00487 argI; Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D DAQ1742_04349 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D DAQ1742_00252 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D DAQ1742_04364 Urea carboxylase K01941 uca; urea carboxylase [EC:6.3.4.6]
D DAQ1742_03490 atzF; Allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54]
D DAQ1742_00030 glnA; Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DAQ1742_03869 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D DAQ1742_03870 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D DAQ1742_02792 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DAQ1742_01351 alaA; Aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D DAQ1742_03352 argA; N-acetylglutamate synthase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D DAQ1742_00251 argB; Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D DAQ1742_00250 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D DAQ1742_04093 argD; Acetylornithine aminotransferase / N-succinyl-L,L-diaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D DAQ1742_00249 argE; Acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:daq00330]
D DAQ1742_03617 codA; Cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D DAQ1742_03926 speA; Biosynthetic arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D DAQ1742_00168 aguA; Agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D DAQ1742_00167 N-carbamoylputrescine amidase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D DAQ1742_03374 speC; Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D DAQ1742_00993 speE; Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D DAQ1742_00992 speD; S-adenosylmethionine decarboxylase proenzyme, prokaryotic class 1A K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D DAQ1742_01506 patA; Putrescine aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82]
D DAQ1742_01505 patD; 4-aminobutyraldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19]
D DAQ1742_03092 speG; Spermidine N1-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D DAQ1742_00071 puuA; Gamma-glutamylputrescine synthetase PuuA K09470 puuA; gamma-glutamylputrescine synthase [EC:6.3.1.11]
D DAQ1742_03622 proC; Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D DAQ1742_04257 putA; Proline dehydrogenase (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase/PutA represses transcription of the put regulon K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D DAQ1742_03450 proB; Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D DAQ1742_03449 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D DAQ1742_02792 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DAQ1742_01746 D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DAQ1742_01234 dat; D-alanine aminotransferase. Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha-keto acid in the first half-reaction. The second-half reaction is the reverse of the first, transferring the amino group from the pyridoxamine to a second alpha-keto acid to form the product D-amino acid via a ping-pong mechanism. This is an important process in the formation of D-alanine and D-glutamate, which are essential bacterial cell wall components K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00340 Histidine metabolism [PATH:daq00340]
D DAQ1742_02093 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D DAQ1742_02086 hisI; Phosphoribosyl-AMP cyclohydrolase / Phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D DAQ1742_02088 hisA; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D DAQ1742_02089 hisH; Imidazole glycerol phosphate synthase amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D DAQ1742_02087 hisF; Imidazole glycerol phosphate synthase cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D DAQ1742_02090 hisB; Histidinol-phosphatase / Imidazoleglycerol-phosphate dehydratase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D DAQ1742_03585 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DAQ1742_02091 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DAQ1742_00654 Histidinol-phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D DAQ1742_02092 hisD; Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D DAQ1742_01179 hutH; Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D DAQ1742_01180 hutU; Urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D DAQ1742_01173 hutI; Imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D DAQ1742_01174 Formiminoglutamic iminohydrolase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D DAQ1742_01172 N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D DAQ1742_04111 Histidine decarboxylase (HDC) (TOM92) K01590 hdc; histidine decarboxylase [EC:4.1.1.22]
C 00350 Tyrosine metabolism [PATH:daq00350]
D DAQ1742_02792 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DAQ1742_03585 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DAQ1742_02091 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DAQ1742_03661 tyrB; Biosynthetic Aromatic amino acid aminotransferase alpha K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D DAQ1742_04448 hpd; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D DAQ1742_02012 adhC; Alcohol dehydrogenase class III; Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DAQ1742_02254 adhE; Alcohol dehydrogenase; Acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D DAQ1742_02520 yiaY; Alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D DAQ1742_02509 Aldehyde dehydrogenase B K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D DAQ1742_02832 Malate dehydrogenase K13574 hcxB; hydroxycarboxylate dehydrogenase B [EC:1.1.1.237 1.1.1.-]
C 00360 Phenylalanine metabolism [PATH:daq00360]
D DAQ1742_02792 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DAQ1742_03585 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DAQ1742_02091 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DAQ1742_03661 tyrB; Biosynthetic Aromatic amino acid aminotransferase alpha K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D DAQ1742_04448 hpd; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D DAQ1742_02419 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D DAQ1742_02500 dadA; D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D DAQ1742_01746 D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DAQ1742_01234 dat; D-alanine aminotransferase. Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha-keto acid in the first half-reaction. The second-half reaction is the reverse of the first, transferring the amino group from the pyridoxamine to a second alpha-keto acid to form the product D-amino acid via a ping-pong mechanism. This is an important process in the formation of D-alanine and D-glutamate, which are essential bacterial cell wall components K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DAQ1742_02832 Malate dehydrogenase K13574 hcxB; hydroxycarboxylate dehydrogenase B [EC:1.1.1.237 1.1.1.-]
D DAQ1742_01773 katG; Catalase / Peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D DAQ1742_00820 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00380 Tryptophan metabolism [PATH:daq00380]
D DAQ1742_02983 sucB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DAQ1742_03789 lpd; Dihydrolipoamide dehydrogenase / Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DAQ1742_00267 fadB; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D DAQ1742_01302 fadJ; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DAQ1742_03842 tnaA; Tryptophanase K01667 tnaA; tryptophanase [EC:4.1.99.1]
D DAQ1742_00941 katE; Catalase K03781 katE; catalase [EC:1.11.1.6]
D DAQ1742_01773 katG; Catalase / Peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:daq00400]
D DAQ1742_02768 aroH; 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DAQ1742_02961 aroG; 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DAQ1742_01807 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DAQ1742_00970 aroF; 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DAQ1742_04126 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D DAQ1742_00349 aroQ; 3-dehydroquinate dehydratase II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D DAQ1742_04014 aroE; Shikimate 5-dehydrogenase I alpha K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D DAQ1742_04127 aroK; Shikimate kinase I K00891 aroK; shikimate kinase [EC:2.7.1.71]
D DAQ1742_03264 aroL; Shikimate kinase III K00891 aroK; shikimate kinase [EC:2.7.1.71]
D DAQ1742_02082 aroA; 5-Enolpyruvylshikimate-3-phosphate synthase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D DAQ1742_01307 aroC; Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D DAQ1742_02228 trpE; Anthranilate synthase, aminase component K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D DAQ1742_02229 Glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D DAQ1742_04494 Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D DAQ1742_02230 trpC; Indole-3-glycerol phosphate synthase / Phosphoribosylanthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D DAQ1742_02232 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D DAQ1742_02231 trpB; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D DAQ1742_00971 tyrA; Chorismate mutase I / Cyclohexadienyl dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D DAQ1742_00535 Periplasmic chorismate mutase I precursor K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D DAQ1742_00972 pheA; Chorismate mutase I / Prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D DAQ1742_03659 pheC; Cyclohexadienyl dehydratase K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91]
D DAQ1742_02792 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DAQ1742_03585 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DAQ1742_02091 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DAQ1742_03661 tyrB; Biosynthetic Aromatic amino acid aminotransferase alpha K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:daq00410]
D DAQ1742_01004 panD; Aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D DAQ1742_02510 goaG; Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D DAQ1742_04399 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]
D DAQ1742_01505 patD; 4-aminobutyraldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19]
D DAQ1742_01005 panC; Pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D DAQ1742_04385 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D DAQ1742_04384 pydA; Dihydropyrimidine dehydrogenase [NADP+] K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D DAQ1742_04383 dht; Dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D DAQ1742_04382 Beta-ureidopropionase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D DAQ1742_00267 fadB; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D DAQ1742_01302 fadJ; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DAQ1742_00798 iolA; Methylmalonate-semialdehyde dehydrogenase [inositol] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:daq00430]
D DAQ1742_01414 ggt; Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D DAQ1742_04399 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]
D DAQ1742_01342 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D DAQ1742_01343 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DAQ1742_04400 Oxidoreductase K15373 isfD; sulfoacetaldehyde reductase [EC:1.1.1.313]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:daq00450]
D DAQ1742_04290 metB; Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D DAQ1742_00435 metC; Cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D DAQ1742_04000 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DAQ1742_02516 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D DAQ1742_03266 Methionine synthase II (cobalamin-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D DAQ1742_00243 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D DAQ1742_02410 Cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D DAQ1742_02331 Cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D DAQ1742_02064 trxB; Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D DAQ1742_03532 cysN; Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D DAQ1742_03533 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DAQ1742_02936 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DAQ1742_00822 metG; Methionyl-tRNA synthetase-related protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:daq00460]
D DAQ1742_01610 bgxA; Beta-hexosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D DAQ1742_01663 bglX; Periplasmic beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D DAQ1742_01414 ggt; Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D DAQ1742_02271 ansA; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D DAQ1742_03265 ansB; L-asparaginase, periplasmic enzyme, AnsB can provide an anaerobic electron acceptor and allows growth on asparagine and glycerol anaerobically (Yogitha, 2013). K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D DAQ1742_00199 iaaA; Glutathione utilization, isoAsp aminopeptidase, cleaves isoAsp-X dipeptides; Ntn hydrolase; weak L-asparaginase activity in vitro K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D DAQ1742_01079 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:daq00470]
D DAQ1742_03657 alr; Alanine racemase, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D DAQ1742_01746 D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DAQ1742_01234 dat; D-alanine aminotransferase. Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha-keto acid in the first half-reaction. The second-half reaction is the reverse of the first, transferring the amino group from the pyridoxamine to a second alpha-keto acid to form the product D-amino acid via a ping-pong mechanism. This is an important process in the formation of D-alanine and D-glutamate, which are essential bacterial cell wall components K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DAQ1742_00795 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DAQ1742_03281 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_04320 vfmO; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_04321 vfmP; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_03280 dltC; D-alanine carrier protein DltC K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D DAQ1742_04279 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D DAQ1742_03820 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D DAQ1742_00207 Protein often near L-alanine-DL-glutamate epimerase (cell wall recycling) K26272 dgcN; D-glutamate N-acetyltransferase [EC:2.3.1.312]
D DAQ1742_01748 Protein often near L-alanine-DL-glutamate epimerase (cell wall recycling) K26272 dgcN; D-glutamate N-acetyltransferase [EC:2.3.1.312]
D DAQ1742_01747 Muconate cycloisomerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D DAQ1742_00206 ycjG; L-Ala-D/L-Glu epimerase; also epimerizes some other Ala-X dipeptides, YcjG has a role in the recycling of the murein peptide.Muconate K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D DAQ1742_01469 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D DAQ1742_04202 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D DAQ1742_04316 vfmK; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D DAQ1742_03640 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D DAQ1742_01512 acsE; Achromobactin biosynthesis protein AcsE, Orn/DAP/Arg decarboxylase family K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D DAQ1742_02419 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D DAQ1742_02500 dadA; D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:daq00480]
D DAQ1742_01414 ggt; Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D DAQ1742_02588 chaC; Cation transport protein chaC K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7]
D DAQ1742_02991 ybgL; Lactam utilization protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D DAQ1742_02993 ybgJ; Allophanate hydrolase 2 subunit 1 K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9]
D DAQ1742_02992 ybgK; Allophanate hydrolase 2 subunit 2 K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D DAQ1742_00959 gshA; Glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D DAQ1742_03934 gshB; Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D DAQ1742_00495 pepA; Cytosol aminopeptidase PepA K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D DAQ1742_01099 pepB; Peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D DAQ1742_02785 pepN; Membrane alanine aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D DAQ1742_03458 pepD; Aminoacyl-histidine dipeptidase (Peptidase D) K01270 pepD; dipeptidase D [EC:3.4.13.-]
D DAQ1742_02517 Uncharacterized glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DAQ1742_02072 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DAQ1742_02131 gst; Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DAQ1742_01657 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DAQ1742_02023 gstB; Uncharacterized glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DAQ1742_02716 gst; Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DAQ1742_01315 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DAQ1742_04425 gor; Glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D DAQ1742_02485 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D DAQ1742_02927 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D DAQ1742_02295 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D DAQ1742_02804 btuE; Glutathione peroxidase family protein K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D DAQ1742_04286 Peroxiredoxin family protein/glutaredoxin K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
D DAQ1742_03374 speC; Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D DAQ1742_00993 speE; Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:daq00511]
D DAQ1742_01467 lacZ; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
C 00540 Lipopolysaccharide biosynthesis [PATH:daq00540]
D DAQ1742_03313 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D DAQ1742_03812 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D DAQ1742_03315 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D DAQ1742_01164 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D DAQ1742_03312 lpxB; Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D DAQ1742_02114 lpxK; Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D DAQ1742_00385 kdsD; Arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D DAQ1742_02145 kdsA; 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D DAQ1742_00384 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D DAQ1742_02116 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D DAQ1742_00222 kdtA; Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase [often with also] K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D DAQ1742_02859 lpxL; Lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D DAQ1742_02299 lpxM; Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D DAQ1742_04063 pmrC; phosphethanolamine transferase, LPS decoration K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D DAQ1742_00044 eptB; Phosphoethanolamine transferase specific for the outer Kdo residue of lipopolysaccharide K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D DAQ1742_04454 arnT; Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D DAQ1742_00767 lpxP; Lipid A biosynthesis lauroyl acyltransferase K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D DAQ1742_03463 lpcA; Phosphoheptose isomerase 1 K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D DAQ1742_03570 rfaE; ADP-heptose synthase / D-glycero-beta-D-manno-heptose 7-phosphate kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D DAQ1742_03515 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D DAQ1742_00232 rfaD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D DAQ1742_00230 rfaC; ADP-heptose:LPS heptosyl transferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D DAQ1742_00231 rfaF; ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D DAQ1742_00225 waaQ; Lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D DAQ1742_00224 waaG; UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
C 00542 O-Antigen repeat unit biosynthesis [PATH:daq00542]
D DAQ1742_04245 rfe; Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:daq00541]
D DAQ1742_02928 galF; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DAQ1742_02258 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DAQ1742_02949 galE; UDP-N-acetylglucosamine 4-epimerase / UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DAQ1742_00761 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DAQ1742_02929 ugd; UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D DAQ1742_02930 dTDP-glucose 4,6-dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D DAQ1742_00755 rrfH; Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D DAQ1742_00754 rrfG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D DAQ1742_00757 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D DAQ1742_00756 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D DAQ1742_04240 rffA; dTDP-4-keto-6-deoxy-D-glucose aminotransferase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D DAQ1742_04241 rffC; dTDP-fucosamine acetyltransferase K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D DAQ1742_02191 manA; Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D DAQ1742_04475 glmU; N-acetylglucosamine-1-phosphate uridyltransferase / Glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D DAQ1742_04243 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D DAQ1742_04242 rffD; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D DAQ1742_00764 Nucleoside-diphosphate sugar epimerase/dehydratase K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D DAQ1742_00765 UDP-glucose 4-epimerase K24310 wbpV; UDP-N-acetyl-alpha-D-quinovosamine dehydrogenase [EC:1.1.1.426]
C 00550 Peptidoglycan biosynthesis [PATH:daq00550]
D DAQ1742_00394 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D DAQ1742_00277 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D DAQ1742_03817 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D DAQ1742_03820 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D DAQ1742_03823 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D DAQ1742_00795 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DAQ1742_03822 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D DAQ1742_03320 ispU; Undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D DAQ1742_03576 bacA; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D DAQ1742_03821 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D DAQ1742_03818 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D DAQ1742_00408 mtgA; Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D DAQ1742_04133 mrcA; Multimodular transpeptidase-transglycosylase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DAQ1742_01016 mrcB; Multimodular transpeptidase-transglycosylase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D DAQ1742_03049 mrdA; Cell division protein ftsI [Peptidoglycan synthetase] K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D DAQ1742_03824 ftsI; Cell division protein FtsI [Peptidoglycan synthetase] K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D DAQ1742_03052 dacA; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D DAQ1742_02029 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D DAQ1742_00684 dacB; D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:daq00552]
D DAQ1742_03576 bacA; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D DAQ1742_04245 rfe; Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D DAQ1742_03281 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_04320 vfmO; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_04321 vfmP; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_03280 dltC; D-alanine carrier protein DltC K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D DAQ1742_03282 dltB; D-alanyl transfer protein DltB K03739 dltB; membrane protein involved in D-alanine export
D DAQ1742_03284 dltD; Poly(glycerophosphate chain) D-alanine transfer protein DltD K03740 dltD; D-alanine transfer protein
D DAQ1742_00764 Nucleoside-diphosphate sugar epimerase/dehydratase K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:daq00543]
D DAQ1742_04245 rfe; Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D DAQ1742_04236 rffM; Probable UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D DAQ1742_04238 rffT; 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D DAQ1742_02337 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DAQ1742_00241 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:daq00730]
D DAQ1742_00305 thiC; Hydroxymethylpyrimidine phosphate synthase ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D DAQ1742_01124 thiD; Hydroxymethylpyrimidine phosphate kinase ThiD K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D DAQ1742_00303 thiF; Sulfur carrier protein adenylyltransferase ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D DAQ1742_01091 iscS; Cysteine desulfurase, IscS subfamily K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DAQ1742_03227 thiI; tRNA S(4)U 4-thiouridine synthase / Rhodanese-like domain required for thiamine synthesis K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D DAQ1742_00300 thiH; 2-iminoacetate synthase (ThiH) K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D DAQ1742_03230 dxs; 1-deoxy-D-xylulose 5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D DAQ1742_00301 thiG; Thiazole biosynthesis protein ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D DAQ1742_00304 thiE; Thiamin-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D DAQ1742_03231 thiL; Thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D DAQ1742_03976 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D DAQ1742_02828 thiK; Thiamine kinase @ Adenosylcobinamide kinase K07251 thiK; thiamine kinase [EC:2.7.1.89]
D DAQ1742_03129 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:daq00740]
D DAQ1742_02713 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D DAQ1742_03234 ribD; Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D DAQ1742_04199 yigB; Putative FMN hydrolase; 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D DAQ1742_00876 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D DAQ1742_03233 ribE; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D DAQ1742_02735 ribC; Riboflavin synthase eubacterial/eukaryotic K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D DAQ1742_03878 ribF; Riboflavin kinase / FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D DAQ1742_00052 Phytase, predicted histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D DAQ1742_00264 fre; NAD(P)H-flavin reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D DAQ1742_02778 ssuE; FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D DAQ1742_00432 nfrA; Oxygen-insensitive NADPH nitroreductase K19286 nfrA2; FMN reductase [NAD(P)H] [EC:1.5.1.39]
D DAQ1742_00419 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D DAQ1742_02487 nudJ; Nudix-like NDP and NTP phosphohydrolase YmfB K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D DAQ1742_01333 ubiX; 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:daq00750]
D DAQ1742_02719 pdxH; Pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D DAQ1742_02717 pdxY; Pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D DAQ1742_03922 epd; D-erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D DAQ1742_01321 pdxB; Erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D DAQ1742_02081 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DAQ1742_03859 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D DAQ1742_01055 pdxJ; Pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D DAQ1742_03896 thrC; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:daq00760]
D DAQ1742_01044 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D DAQ1742_02963 nadA; Quinolinate synthetase K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D DAQ1742_03800 nadC; Quinolinate phosphoribosyltransferase [decarboxylating] K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D DAQ1742_02787 pncB; Nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D DAQ1742_00719 deoD; Purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D DAQ1742_00556 nadR; NadR transcriptional regulator / Nicotinamide-nucleotide adenylyltransferase, NadR family / Ribosylnicotinamide kinase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D DAQ1742_03125 ushA; UDP-sugar hydrolase; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D DAQ1742_03046 nadD; Nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D DAQ1742_03550 mazG; Nucleoside triphosphate pyrophosphohydrolase MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D DAQ1742_00307 nudC; NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D DAQ1742_02468 nadE; NAD synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D DAQ1742_00948 pncC; Pyridine nucleotide cycle. NMN amidohydrolase.NMN amidohydrolase is required for the recycling of NAD K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D DAQ1742_02272 pncA; Nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D DAQ1742_02807 cobB; NAD-dependent protein deacetylase of SIR2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D DAQ1742_00841 nadK; NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D DAQ1742_04284 sthA; Soluble pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D DAQ1742_02147 pntA; NAD(P) transhydrogenase alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D DAQ1742_02148 pntB; NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D DAQ1742_02509 Aldehyde dehydrogenase B K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:daq00770]
D DAQ1742_03832 ilvI; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_03849 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_04267 ilvG; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_00733 budB; Acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DAQ1742_03831 ilvH; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DAQ1742_03850 ilvN; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DAQ1742_04266 ilvM; Acetolactate synthase small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D DAQ1742_04259 ilvC; Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D DAQ1742_04264 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D DAQ1742_01006 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D DAQ1742_03225 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D DAQ1742_01005 panC; Pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D DAQ1742_00279 coaA; Pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D DAQ1742_00214 dfp; Phosphopantothenoylcysteine decarboxylase / Phosphopantothenoylcysteine synthetase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D DAQ1742_03550 mazG; Nucleoside triphosphate pyrophosphohydrolase MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D DAQ1742_00220 coaD; Phosphopantetheine adenylyltransferase . Coenzyme A biosynthesis. K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D DAQ1742_03805 coaE; Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D DAQ1742_01056 acpS; Holo-[acyl-carrier protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D DAQ1742_04331 vfmJ; 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D DAQ1742_03244 acpH; Acyl carrier protein phosphodiesterase K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D DAQ1742_02416 Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DAQ1742_04265 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DAQ1742_04385 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D DAQ1742_04384 pydA; Dihydropyrimidine dehydrogenase [NADP+] K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D DAQ1742_04383 dht; Dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D DAQ1742_04382 Beta-ureidopropionase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D DAQ1742_01004 panD; Aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:daq00780]
D DAQ1742_01614 bioC; SAM-dependent methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D DAQ1742_01319 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase, KASI K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D DAQ1742_01784 3-oxoacyl-[acyl-carrier-protein] synthase, KASII K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DAQ1742_02840 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase, KASII K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DAQ1742_03403 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II, putative K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DAQ1742_02889 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02890 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_01804 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_01806 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02421 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02842 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_03314 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D DAQ1742_02699 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DAQ1742_04147 bioH; Biotin synthesis protein BioH. Carboxylesterase. K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D DAQ1742_01613 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D DAQ1742_01611 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D DAQ1742_01615 bioD; Dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D DAQ1742_02186 ynfK; Dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D DAQ1742_01612 bioB; Biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D DAQ1742_00278 birA; bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/DNA-binding transcriptional repressor, bio-5'-AMP-binding K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D DAQ1742_00904 Anaerobic dimethyl sulfoxide reductase chain A K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
C 00785 Lipoic acid metabolism [PATH:daq00785]
D DAQ1742_03054 lipB; Octanoate-[acyl-carrier-protein]-protein-N-octan oyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D DAQ1742_03055 lipA; Lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D DAQ1742_02800 lplA; Lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D DAQ1742_03789 lpd; Dihydrolipoamide dehydrogenase / Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DAQ1742_03791 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D DAQ1742_03790 aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DAQ1742_02984 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D DAQ1742_02983 sucB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DAQ1742_00737 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D DAQ1742_00735 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D DAQ1742_00736 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:daq00790]
D DAQ1742_02018 folE; GTP cyclohydrolase I type 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D DAQ1742_02310 nudB; dATP pyrophosphohydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D DAQ1742_03578 folB; Dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D DAQ1742_01008 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridinepyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D DAQ1742_00690 folP; Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D DAQ1742_03864 folA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D DAQ1742_01327 folC; Dihydrofolate synthase / Folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D DAQ1742_02713 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D DAQ1742_04094 pabA; Para-aminobenzoate synthase, amidotransferase component K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D DAQ1742_02445 pabB; Para-aminobenzoate synthase, aminase component K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D DAQ1742_02838 pabC; Aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D DAQ1742_03543 queD; 6-carboxytetrahydropterin synthase @ Queuosine biosynthesis QueD, PTPS-I K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D DAQ1742_03544 queE; 7-carboxy-7-deazaguanine synthase; queuosine biosynthesis K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D DAQ1742_03154 queC; Queuosine Biosynthesis QueC ATPase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D DAQ1742_00896 queF; NADPH dependent preQ0 reductase, queunosine biosynthesis K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D DAQ1742_01633 moaA; Molybdenum cofactor biosynthesis protein MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D DAQ1742_01635 moaC; Molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D DAQ1742_01637 moaE; Molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D DAQ1742_03890 mog; Molybdopterin biosynthesis molybdochelatase MogA K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D DAQ1742_01634 moaB; Molybdenum cofactor biosynthesis protein MoaB K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D DAQ1742_01603 moeA; Molybdopterin biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D DAQ1742_00017 mobA; Molybdopterin-guanine dinucleotide biosynthesis protein MobA K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:daq00670]
D DAQ1742_03864 folA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D DAQ1742_01169 folD; Methylenetetrahydrofolate dehydrogenase (NADP+) / Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D DAQ1742_01079 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DAQ1742_03080 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D DAQ1742_00314 purH; IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D DAQ1742_04021 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D DAQ1742_00735 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D DAQ1742_04000 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DAQ1742_03358 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D DAQ1742_02263 purU; Formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D DAQ1742_04287 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D DAQ1742_00555 fau; 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:daq00860]
D DAQ1742_01035 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DAQ1742_02141 hemA; Glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D DAQ1742_01017 hemL; Glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D DAQ1742_00261 hemB; Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D DAQ1742_04207 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D DAQ1742_04208 hemD; Uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D DAQ1742_00308 hemE; Uroporphyrinogen III decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D DAQ1742_00847 hemF; Coproporphyrinogen III oxidase, aerobic K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D DAQ1742_00025 hemN; Coproporphyrinogen III oxidase, oxygen-independent K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D DAQ1742_00271 hemG; Protoporphyrinogen IX oxidase, oxygen-independent, HemG K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D DAQ1742_03127 hemH; Ferrochelatase, protoheme ferro-lyase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D DAQ1742_04210 hemX; predicted uroporphyrinogen III methylase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D DAQ1742_03534 cysG; Siroheme synthase / Precorrin-2 oxidase / Sirohydrochlorin ferrochelatase / Uroporphyrinogen-III methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D DAQ1742_01398 nirE; Uroporphyrinogen-III methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D DAQ1742_03222 cyoE; Heme O synthase, protoheme IX farnesyltransferase COX10-CtaB K02257 COX10; heme o synthase [EC:2.5.1.141]
D DAQ1742_02223 btuR; Cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D DAQ1742_04053 bfr; Bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:daq00130]
D DAQ1742_00596 ubiC; Chorismate--pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D DAQ1742_00597 ubiA; 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D DAQ1742_00263 ubiD; 3-polyprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D DAQ1742_01333 ubiX; 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D DAQ1742_00550 ubiI; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D DAQ1742_03113 ubiG; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D DAQ1742_00551 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D DAQ1742_00254 ubiE; Ubiquinone/menaquinone biosynthesis methyltransferase UbiE @ 2-heptaprenyl-1,4-naphthoquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D DAQ1742_03029 ubiF; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D DAQ1742_03107 menF; Menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D DAQ1742_01259 cbsC; Isochorismate synthase [enterobactin] siderophore K02361 entC; isochorismate synthase [EC:5.4.4.2]
D DAQ1742_03105 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D DAQ1742_03104 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D DAQ1742_03102 menC; O-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D DAQ1742_03101 menE; O-succinylbenzoic acid--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D DAQ1742_03103 menB; Naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D DAQ1742_02761 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase in menaquinone biosynthesis K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D DAQ1742_01255 entH; Thioesterase necessary for optimal production of chrysobactin K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D DAQ1742_04298 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D DAQ1742_01599 wrbA; Multimeric flavodoxin WrbA K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D DAQ1742_02168 qorB; NADPH:quinone oxidoreductase 2 K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D DAQ1742_03293 hypothetical protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D DAQ1742_04448 hpd; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:daq00900]
D DAQ1742_03230 dxs; 1-deoxy-D-xylulose 5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D DAQ1742_03321 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D DAQ1742_03529 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D DAQ1742_02139 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D DAQ1742_03528 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D DAQ1742_01108 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D DAQ1742_03874 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D DAQ1742_01333 ubiX; 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D DAQ1742_03229 ispA; Octaprenyl-diphosphate synthase / Dimethylallyltransferase / Geranyltranstransferase (farnesyldiphosphate synthase) / Geranylgeranyl pyrophosphate synthetase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D DAQ1742_00679 ispB; Octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D DAQ1742_03320 ispU; Undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation [PATH:daq00903]
D DAQ1742_03296 6-hexanolactone hydrolase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
C 00907 Pinene, camphor and geraniol degradation [PATH:daq00907]
D DAQ1742_00267 fadB; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D DAQ1742_01302 fadJ; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DAQ1742_00266 fadA; 3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D DAQ1742_01301 fadI; 3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D DAQ1742_02887 Transketolase, C-terminal section K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DAQ1742_02888 Transketolase, N-terminal section K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DAQ1742_03924 tktA; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DAQ1742_01787 Transketolase, N-terminal section K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DAQ1742_01788 Transketolase, C-terminal section K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:daq00523]
D DAQ1742_00755 rrfH; Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D DAQ1742_00754 rrfG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D DAQ1742_00757 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D DAQ1742_00756 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures [PATH:daq01054]
D DAQ1742_01469 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:daq01053]
D DAQ1742_03107 menF; Menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D DAQ1742_01259 cbsC; Isochorismate synthase [enterobactin] siderophore K02361 entC; isochorismate synthase [EC:5.4.4.2]
D DAQ1742_01257 cbsB; Isochorismatase [enterobactin] siderophore / Apo-aryl carrier domain of EntB K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D DAQ1742_01256 cbsA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase K00216 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28]
D DAQ1742_00564 4'-phosphopantetheinyl transferase [enterobactin] siderophore K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D DAQ1742_01258 cbsE; 2,3-dihydroxybenzoate-AMP ligase [enterobactin] siderophore K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
C 01055 Biosynthesis of vancomycin group antibiotics
D DAQ1742_00754 rrfG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:daq00946]
D DAQ1742_01610 bgxA; Beta-hexosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D DAQ1742_01663 bglX; Periplasmic beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D DAQ1742_02681 Penicillin acylase II K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis [PATH:daq00332]
D DAQ1742_03450 proB; Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D DAQ1742_03449 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D DAQ1742_04177 cpmD; CpmD protein involved in carbapenem biosynthesis K18318 cpmD; carbapenem biosynthesis protein, putative proline dehydrogenase [EC:1.5.-.-]
D DAQ1742_04175 cpmB; CpmB protein involved in carbapenem biosynthesis K18317 cpmB; carboxymethylproline synthase [EC:2.3.1.226]
D DAQ1742_04174 cpmA; Carbapenam-3-carboxylate synthase K18316 cpmA; carbapenam-3-carboxylate synthase [EC:6.3.3.6]
D DAQ1742_04176 cpmC; CpmC protein involved in carbapenem biosynthesis K18315 cpmC; (5R)-carbapenem-3-carboxylate synthase [EC:1.14.20.3]
C 00261 Monobactam biosynthesis [PATH:daq00261]
D DAQ1742_01262 ybdZ; MbtH-like protein K05375 mbtH; MbtH protein
D DAQ1742_03532 cysN; Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D DAQ1742_03533 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DAQ1742_03993 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DAQ1742_03898 thrA; Aspartokinase / Homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D DAQ1742_04289 metL; Aspartokinase / Homoserine dehydrogenase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D DAQ1742_04169 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DAQ1742_03070 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DAQ1742_03778 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DAQ1742_02417 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DAQ1742_00818 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DAQ1742_03872 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:daq00521]
D DAQ1742_04414 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D DAQ1742_03005 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D DAQ1742_01088 suhB; Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D DAQ1742_00803 idhA; Myo-inositol 2-dehydrogenase 1 K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D DAQ1742_00755 rrfH; Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D DAQ1742_00754 rrfG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D DAQ1742_00757 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D DAQ1742_00756 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D DAQ1742_04414 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:daq00525]
D DAQ1742_00755 rrfH; Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D DAQ1742_00754 rrfG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:daq00401]
D DAQ1742_00971 tyrA; Chorismate mutase I / Cyclohexadienyl dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D DAQ1742_02792 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DAQ1742_03585 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DAQ1742_02091 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DAQ1742_03661 tyrB; Biosynthetic Aromatic amino acid aminotransferase alpha K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D DAQ1742_02228 trpE; Anthranilate synthase, aminase component K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D DAQ1742_02229 Glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D DAQ1742_02843 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D DAQ1742_02889 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02890 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_01804 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_01806 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02421 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02842 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02699 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics [PATH:daq00998]
D DAQ1742_02841 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
D DAQ1742_03417 hypothetical protein K02078 acpP; acyl carrier protein
D DAQ1742_03406 bacA; Bacilysin biosynthesis protein BacA; Similarities with prephenate dehydratase K19546 bacA; prephenate decarboxylase [EC:4.1.1.100]
D DAQ1742_03407 bacB; Bacilysin biosynthesis protein BacB K19547 bacB; 3-[(4R)-4-hydroxycyclohexa-1,5-dien-1-yl]-2-oxopropanoate isomerase [EC:5.3.3.19]
C 00999 Biosynthesis of various plant secondary metabolites [PATH:daq00999]
D DAQ1742_03929 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D DAQ1742_04014 aroE; Shikimate 5-dehydrogenase I alpha K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D DAQ1742_01610 bgxA; Beta-hexosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D DAQ1742_01663 bglX; Periplasmic beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites [PATH:daq00997]
D DAQ1742_01514 acsC; achromobactin synthetase component K23374 sbnF; 2-[(L-alanin-3-ylcarbamoyl)methyl]-3-(2-aminoethylcarbamoyl)-2-hydroxypropanoate synthase [EC:6.3.2.55]
D DAQ1742_01516 acsA; Achromobactin biosynthesis protein AcsA @ Siderophore synthetase superfamily, group B K23375 sbnC; staphyloferrin B synthase [EC:6.3.2.56]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:daq00362]
D DAQ1742_00266 fadA; 3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D DAQ1742_01301 fadI; 3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D DAQ1742_00820 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D DAQ1742_02514 pptA; Probable tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D DAQ1742_03395 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D DAQ1742_00103 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D DAQ1742_01302 fadJ; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DAQ1742_00267 fadB; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00627 Aminobenzoate degradation [PATH:daq00627]
D DAQ1742_01145 yccX; Acylphosphate phosphohydrolase, putative K01512 acyP; acylphosphatase [EC:3.6.1.7]
D DAQ1742_01333 ubiX; 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation [PATH:daq00364]
D DAQ1742_00244 ysgA; Putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:daq00625]
D DAQ1742_02520 yiaY; Alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D DAQ1742_02012 adhC; Alcohol dehydrogenase class III; Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DAQ1742_02254 adhE; Alcohol dehydrogenase; Acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:daq00361]
D DAQ1742_00244 ysgA; Putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:daq00623]
D DAQ1742_00244 ysgA; Putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation [PATH:daq00622]
D DAQ1742_02514 pptA; Probable tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D DAQ1742_03395 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D DAQ1742_00103 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D DAQ1742_00820 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00633 Nitrotoluene degradation [PATH:daq00633]
D DAQ1742_02037 nfsA; Oxygen-insensitive NADPH nitroreductase K10678 nfsA; nitroreductase [EC:1.-.-.-]
D DAQ1742_01778 nemA; NADH:flavin oxidoreductase/NADH oxidase family protein K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D DAQ1742_01373 hybC; Uptake hydrogenase large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D DAQ1742_01370 hybO; Uptake hydrogenase small subunit precursor K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
C 00642 Ethylbenzene degradation
D DAQ1742_00266 fadA; 3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D DAQ1742_01301 fadI; 3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
C 00791 Atrazine degradation [PATH:daq00791]
D DAQ1742_03490 atzF; Allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54]
D DAQ1742_04364 Urea carboxylase K01941 uca; urea carboxylase [EC:6.3.4.6]
C 00930 Caprolactam degradation [PATH:daq00930]
D DAQ1742_03296 6-hexanolactone hydrolase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
D DAQ1742_00267 fadB; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D DAQ1742_01302 fadJ; Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation [PATH:daq00621]
D DAQ1742_02514 pptA; Probable tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D DAQ1742_03395 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D DAQ1742_00103 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D DAQ1742_00820 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00626 Naphthalene degradation [PATH:daq00626]
D DAQ1742_02520 yiaY; Alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D DAQ1742_02012 adhC; Alcohol dehydrogenase class III; Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D DAQ1742_02254 adhE; Alcohol dehydrogenase; Acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:daq03020]
D DAQ1742_00291 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D DAQ1742_00292 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D DAQ1742_04028 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D DAQ1742_00041 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:daq03010]
D DAQ1742_02084 rpsA; SSU ribosomal protein S1p K02945 RP-S1; small subunit ribosomal protein S1
D DAQ1742_03325 rpsB; SSU ribosomal protein S2p (SAe) K02967 RP-S2; small subunit ribosomal protein S2
D DAQ1742_04045 rpsC; SSU ribosomal protein S3p (S3e) K02982 RP-S3; small subunit ribosomal protein S3
D DAQ1742_04029 rpsD; SSU ribosomal protein S4p (S9e) K02986 RP-S4; small subunit ribosomal protein S4
D DAQ1742_04035 rpsE; SSU ribosomal protein S5p (S2e) K02988 RP-S5; small subunit ribosomal protein S5
D DAQ1742_03605 rpsF; SSU ribosomal protein S6p K02990 RP-S6; small subunit ribosomal protein S6
D DAQ1742_04057 rpsG; SSU ribosomal protein S7p (S5e) K02992 RP-S7; small subunit ribosomal protein S7
D DAQ1742_04038 rpsH; SSU ribosomal protein S8p (S15Ae) K02994 RP-S8; small subunit ribosomal protein S8
D DAQ1742_00400 rpsI; SSU ribosomal protein S9p (S16e) K02996 RP-S9; small subunit ribosomal protein S9
D DAQ1742_04052 rpsJ; SSU ribosomal protein S10p (S20e) K02946 RP-S10; small subunit ribosomal protein S10
D DAQ1742_04030 rpsK; SSU ribosomal protein S11p (S14e) K02948 RP-S11; small subunit ribosomal protein S11
D DAQ1742_04058 rpsL; SSU ribosomal protein S12p (S23e) K02950 RP-S12; small subunit ribosomal protein S12
D DAQ1742_04031 rpsM; SSU ribosomal protein S13p (S18e) K02952 RP-S13; small subunit ribosomal protein S13
D DAQ1742_00700 rpsO; SSU ribosomal protein S15p (S13e) K02956 RP-S15; small subunit ribosomal protein S15
D DAQ1742_00964 rpsP; SSU ribosomal protein S16p K02959 RP-S16; small subunit ribosomal protein S16
D DAQ1742_04042 rpsQ; SSU ribosomal protein S17p (S11e) K02961 RP-S17; small subunit ribosomal protein S17
D DAQ1742_03603 rpsR; SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent K02963 RP-S18; small subunit ribosomal protein S18
D DAQ1742_04047 rpsS; SSU ribosomal protein S19p (S15e) K02965 RP-S19; small subunit ribosomal protein S19
D DAQ1742_03881 rpsT; SSU ribosomal protein S20p K02968 RP-S20; small subunit ribosomal protein S20
D DAQ1742_00673 rpsU; SSU ribosomal protein S21p K02970 RP-S21; small subunit ribosomal protein S21
D DAQ1742_00288 rplA; LSU ribosomal protein L1p (L10Ae) K02863 RP-L1; large subunit ribosomal protein L1
D DAQ1742_04048 rplB; LSU ribosomal protein L2p (L8e) K02886 RP-L2; large subunit ribosomal protein L2
D DAQ1742_04051 rplC; LSU ribosomal protein L3p (L3e) K02906 RP-L3; large subunit ribosomal protein L3
D DAQ1742_04050 rplD; LSU ribosomal protein L4p (L1e) K02926 RP-L4; large subunit ribosomal protein L4
D DAQ1742_04039 rplE; LSU ribosomal protein L5p (L11e) K02931 RP-L5; large subunit ribosomal protein L5
D DAQ1742_04037 rplF; LSU ribosomal protein L6p (L9e) K02933 RP-L6; large subunit ribosomal protein L6
D DAQ1742_00290 rplL; LSU ribosomal protein L7/L12 (P1/P2) K02935 RP-L7; large subunit ribosomal protein L7/L12
D DAQ1742_03602 rplI; LSU ribosomal protein L9p K02939 RP-L9; large subunit ribosomal protein L9
D DAQ1742_00289 rplJ; LSU ribosomal protein L10p (P0) K02864 RP-L10; large subunit ribosomal protein L10
D DAQ1742_00287 rplK; LSU ribosomal protein L11p (L12e) K02867 RP-L11; large subunit ribosomal protein L11
D DAQ1742_00399 rplM; LSU ribosomal protein L13p (L13Ae) K02871 RP-L13; large subunit ribosomal protein L13
D DAQ1742_04041 rplN; LSU ribosomal protein L14p (L23e) K02874 RP-L14; large subunit ribosomal protein L14
D DAQ1742_04033 rplO; LSU ribosomal protein L15p (L27Ae) K02876 RP-L15; large subunit ribosomal protein L15
D DAQ1742_04044 rplP; LSU ribosomal protein L16p (L10e) K02878 RP-L16; large subunit ribosomal protein L16
D DAQ1742_04027 rplQ; LSU ribosomal protein L17p K02879 RP-L17; large subunit ribosomal protein L17
D DAQ1742_04036 rplR; LSU ribosomal protein L18p (L5e) K02881 RP-L18; large subunit ribosomal protein L18
D DAQ1742_00967 rplS; LSU ribosomal protein L19p K02884 RP-L19; large subunit ribosomal protein L19
D DAQ1742_02475 rplT; LSU ribosomal protein L20p K02887 RP-L20; large subunit ribosomal protein L20
D DAQ1742_00680 rplU; LSU ribosomal protein L21p K02888 RP-L21; large subunit ribosomal protein L21
D DAQ1742_04046 rplV; LSU ribosomal protein L22p (L17e) K02890 RP-L22; large subunit ribosomal protein L22
D DAQ1742_04049 rplW; LSU ribosomal protein L23p (L23Ae) K02892 RP-L23; large subunit ribosomal protein L23
D DAQ1742_04040 rplX; LSU ribosomal protein L24p (L26e) K02895 RP-L24; large subunit ribosomal protein L24
D DAQ1742_01978 rplY; LSU ribosomal protein L25p K02897 RP-L25; large subunit ribosomal protein L25
D DAQ1742_00681 rpmA; LSU ribosomal protein L27p K02899 RP-L27; large subunit ribosomal protein L27
D DAQ1742_00217 rmpB; LSU ribosomal protein L28p K02902 RP-L28; large subunit ribosomal protein L28
D DAQ1742_04043 rpmC; LSU ribosomal protein L29p (L35e) K02904 RP-L29; large subunit ribosomal protein L29
D DAQ1742_04034 rpmD; LSU ribosomal protein L30p (L7e) K02907 RP-L30; large subunit ribosomal protein L30
D DAQ1742_03143 ykgM; LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent K02909 RP-L31; large subunit ribosomal protein L31
D DAQ1742_02846 rpmF; LSU ribosomal protein L32p K02911 RP-L32; large subunit ribosomal protein L32
D DAQ1742_00218 rmpG; LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent K02913 RP-L33; large subunit ribosomal protein L33
D DAQ1742_04438 rpmH; LSU ribosomal protein L34p K02914 RP-L34; large subunit ribosomal protein L34
D DAQ1742_02476 rpmI; LSU ribosomal protein L35p K02916 RP-L35; large subunit ribosomal protein L35
D DAQ1742_00012 Small Subunit Ribosomal RNA; ssuRNA; SSU ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DAQ1742_03514 Small Subunit Ribosomal RNA; ssuRNA; SSU ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DAQ1742_00318 Large Subunit Ribosomal RNA; lsuRNA; LSU ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DAQ1742_00014 Large Subunit Ribosomal RNA; lsuRNA; LSU ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DAQ1742_00275 Large Subunit Ribosomal RNA; lsuRNA; LSU ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DAQ1742_00015 5S RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:daq00970]
D DAQ1742_01038 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DAQ1742_01037 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DAQ1742_00274 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DAQ1742_00317 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DAQ1742_04276 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DAQ1742_00954 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DAQ1742_04232 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DAQ1742_00955 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DAQ1742_00956 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DAQ1742_01296 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DAQ1742_01231 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DAQ1742_01466 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D DAQ1742_01867 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D DAQ1742_02743 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D DAQ1742_00984 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DAQ1742_00991 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DAQ1742_04273 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DAQ1742_01876 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D DAQ1742_03024 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DAQ1742_03025 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DAQ1742_03027 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DAQ1742_00013 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DAQ1742_00979 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DAQ1742_03513 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DAQ1742_04009 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DAQ1742_00752 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DAQ1742_01875 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DAQ1742_03951 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DAQ1742_03953 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DAQ1742_03973 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DAQ1742_00282 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DAQ1742_04231 tRNA-His K14226 tRNA-His; tRNA His
D DAQ1742_00273 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DAQ1742_00316 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DAQ1742_04277 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DAQ1742_01877 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_03023 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_00499 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_00727 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_00728 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_00729 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_04230 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_00693 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_01870 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DAQ1742_01030 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DAQ1742_02966 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DAQ1742_02967 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DAQ1742_02968 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DAQ1742_00670 tRNA-Met K14230 tRNA-Met; tRNA Met
D DAQ1742_00694 tRNA-Met K14230 tRNA-Met; tRNA Met
D DAQ1742_03022 tRNA-Met K14230 tRNA-Met; tRNA Met
D DAQ1742_03026 tRNA-Met K14230 tRNA-Met; tRNA Met
D DAQ1742_03348 tRNA-Met K14230 tRNA-Met; tRNA Met
D DAQ1742_03349 tRNA-Met K14230 tRNA-Met; tRNA Met
D DAQ1742_00587 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D DAQ1742_03377 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D DAQ1742_01971 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DAQ1742_04229 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DAQ1742_00045 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DAQ1742_02330 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DAQ1742_01148 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DAQ1742_00953 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DAQ1742_02874 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DAQ1742_02745 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DAQ1742_00283 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DAQ1742_00280 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DAQ1742_03448 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DAQ1742_00982 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DAQ1742_04272 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D DAQ1742_02264 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D DAQ1742_00281 tRNA-Pseudo-GTA K14236 tRNA-Tyr; tRNA Tyr
D DAQ1742_01031 tRNA-Val K14237 tRNA-Val; tRNA Val
D DAQ1742_02738 tRNA-Val K14237 tRNA-Val; tRNA Val
D DAQ1742_02739 tRNA-Val K14237 tRNA-Val; tRNA Val
D DAQ1742_01032 tRNA-Val K14237 tRNA-Val; tRNA Val
D DAQ1742_01033 tRNA-Val K14237 tRNA-Val; tRNA Val
D DAQ1742_01035 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DAQ1742_03014 glnS; Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D DAQ1742_00951 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DAQ1742_02311 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DAQ1742_02788 asnS; Asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D DAQ1742_04370 glyQ; Glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D DAQ1742_04369 glyS; Glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D DAQ1742_02478 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DAQ1742_02070 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DAQ1742_01167 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DAQ1742_02936 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DAQ1742_00822 metG; Methionyl-tRNA synthetase-related protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DAQ1742_04021 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D DAQ1742_00493 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DAQ1742_03043 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DAQ1742_03877 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DAQ1742_00750 lysS; Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D DAQ1742_02319 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DAQ1742_03521 proS; Prolyl-tRNA synthetase, bacterial type K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D DAQ1742_01109 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DAQ1742_02474 pheS; Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DAQ1742_03583 Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DAQ1742_02473 pheT; Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DAQ1742_02718 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DAQ1742_04121 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:daq03060]
D DAQ1742_04032 secY; Preprotein translocase secY subunit (TC 3.A.5.1.1) K03076 secY; preprotein translocase subunit SecY
D DAQ1742_00285 secE; Preprotein translocase subunit SecE (TC 3.A.5.1.1) K03073 secE; preprotein translocase subunit SecE
D DAQ1742_00692 secG; Preprotein translocase subunit SecG (TC 3.A.5.1.1) K03075 secG; preprotein translocase subunit SecG
D DAQ1742_03239 secD; Protein-export membrane protein SecD (TC 3.A.5.1.1) K03072 secD; preprotein translocase subunit SecD
D DAQ1742_03238 secF; Protein-export membrane protein SecF (TC 3.A.5.1.1) K03074 secF; preprotein translocase subunit SecF
D DAQ1742_03240 yajC; Preprotein translocase subunit YajC (TC 3.A.5.1.1) K03210 yajC; preprotein translocase subunit YajC
D DAQ1742_04441 yidC; Inner membrane protein translocase component YidC, long form K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DAQ1742_03809 secA; Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DAQ1742_00238 secB; Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) K03071 secB; preprotein translocase subunit SecB
D DAQ1742_03810 secM; regulator of secA translation K13301 secM; secretion monitor
D DAQ1742_00963 ffh; Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D DAQ1742_00113 ftsY; Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) K03110 ftsY; fused signal recognition particle receptor
D DAQ1742_00257 tatA; Twin-arginine translocation protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D DAQ1742_00258 tatB; Twin-arginine translocation protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D DAQ1742_00259 tatC; Twin-arginine translocation protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D DAQ1742_03056 tatE; Twin-arginine translocation protein TatE K03425 tatE; sec-independent protein translocase protein TatE
D DAQ1742_01051 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D DAQ1742_03876 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:daq04122]
D DAQ1742_01091 iscS; Cysteine desulfurase, IscS subfamily K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DAQ1742_01101 sseA; 3-mercaptopyruvate:cyanide sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D DAQ1742_00108 tusA; tRNA 5-methylaminomethyl-2-thiouridine synthase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D DAQ1742_04059 tusB; tRNA 5-methylaminomethyl-2-thiouridine synthase TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D DAQ1742_04060 tusC; tRNA 5-methylaminomethyl-2-thiouridine synthase TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D DAQ1742_04061 tusD; tRNA 5-methylaminomethyl-2-thiouridine synthase TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D DAQ1742_01146 tusE; tRNA 2-thiouridine synthesizing protein E K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D DAQ1742_02488 mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D DAQ1742_01637 moaE; Molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D DAQ1742_01633 moaA; Molybdenum cofactor biosynthesis protein MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D DAQ1742_01636 moaD; Molybdenum cofactor biosynthesis protein MoaD K03636 moaD; sulfur-carrier protein
D DAQ1742_02334 Molybdenum cofactor biosynthesis protein MoaD K03636 moaD; sulfur-carrier protein
D DAQ1742_01602 moeB; Molybdopterin biosynthesis protein MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D DAQ1742_02333 Sulfur carrier protein adenylyltransferase ThiF K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D DAQ1742_01635 moaC; Molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D DAQ1742_03890 mog; Molybdopterin biosynthesis molybdochelatase MogA K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D DAQ1742_01634 moaB; Molybdenum cofactor biosynthesis protein MoaB K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D DAQ1742_03227 thiI; tRNA S(4)U 4-thiouridine synthase / Rhodanese-like domain required for thiamine synthesis K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D DAQ1742_00302 thiS; Sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
D DAQ1742_00303 thiF; Sulfur carrier protein adenylyltransferase ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:daq03018]
D DAQ1742_03361 nudH; Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D DAQ1742_02850 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D DAQ1742_04249 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D DAQ1742_03548 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DAQ1742_00702 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D DAQ1742_01644 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D DAQ1742_03613 rnr; 3'-to-5' exoribonuclease RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D DAQ1742_00704 deaD; ATP-dependent RNA helicase, 50S ribosomal subunit biogenesis; translation factor W2; facilitates translation of mRNAs with 5' secondary structures K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D DAQ1742_04191 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D DAQ1742_04247 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D DAQ1742_00166 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D DAQ1742_03886 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D DAQ1742_00595 groL; Heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DAQ1742_03944 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D DAQ1742_01154 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D DAQ1742_01009 pcnB; Poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:daq03030]
D DAQ1742_02289 holE; DNA polymerase III theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D DAQ1742_00990 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DAQ1742_03310 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DAQ1742_03133 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DAQ1742_02835 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DAQ1742_03045 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DAQ1742_00725 holD; DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D DAQ1742_00494 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DAQ1742_04435 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DAQ1742_03656 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D DAQ1742_00672 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D DAQ1742_03738 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DAQ1742_01284 Putative single stranded DNA-binding protein of prophage K03111 ssb; single-strand DNA-binding protein
D DAQ1742_00989 rnhA; Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D DAQ1742_03311 rnhB; ribonuclease HII nicks DNA 5' to misincorporated ribonucleotides K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D DAQ1742_00022 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DAQ1742_03569 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DAQ1742_00043 ligB; DNA ligase, LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:daq03410]
D DAQ1742_02214 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D DAQ1742_01039 ung; Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D DAQ1742_03368 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D DAQ1742_00219 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D DAQ1742_02990 nei; Endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D DAQ1742_04373 tagA; DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D DAQ1742_02266 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D DAQ1742_02000 nfo; Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D DAQ1742_00022 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DAQ1742_00748 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DAQ1742_03569 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DAQ1742_00043 ligB; DNA ligase, LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:daq03420]
D DAQ1742_02812 mfd; Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D DAQ1742_03736 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D DAQ1742_01617 uvrB; Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D DAQ1742_01873 uvrC; Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D DAQ1742_04198 uvrD; ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DAQ1742_00022 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DAQ1742_03569 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DAQ1742_00043 ligB; DNA ligase, LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:daq03430]
D DAQ1742_03302 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D DAQ1742_03946 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D DAQ1742_03362 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D DAQ1742_04198 uvrD; ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DAQ1742_02110 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D DAQ1742_01115 xseA; Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D DAQ1742_03228 xseB; Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DAQ1742_00748 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DAQ1742_03738 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DAQ1742_01284 Putative single stranded DNA-binding protein of prophage K03111 ssb; single-strand DNA-binding protein
D DAQ1742_03310 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DAQ1742_04435 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DAQ1742_03133 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DAQ1742_03045 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DAQ1742_02835 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DAQ1742_00990 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DAQ1742_02289 holE; DNA polymerase III theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D DAQ1742_00494 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DAQ1742_00725 holD; DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D DAQ1742_03569 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DAQ1742_00043 ligB; DNA ligase, LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DAQ1742_01910 Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D DAQ1742_04124 dam; Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:daq03440]
D DAQ1742_00748 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DAQ1742_03738 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DAQ1742_01284 Putative single stranded DNA-binding protein of prophage K03111 ssb; single-strand DNA-binding protein
D DAQ1742_04434 recF; DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D DAQ1742_01054 recO; DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D DAQ1742_03131 recR; Recombination protein RecR K06187 recR; recombination protein RecR
D DAQ1742_00949 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D DAQ1742_00022 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DAQ1742_02305 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D DAQ1742_02304 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D DAQ1742_02308 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D DAQ1742_02519 FIG01183406: hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D DAQ1742_00038 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D DAQ1742_01955 recB; Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D DAQ1742_01954 recC; Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D DAQ1742_01956 recD; Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D DAQ1742_03310 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DAQ1742_04435 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DAQ1742_03133 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DAQ1742_03045 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DAQ1742_02835 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DAQ1742_00990 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DAQ1742_02289 holE; DNA polymerase III theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D DAQ1742_00494 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DAQ1742_00725 holD; DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D DAQ1742_04293 priA; Helicase PriA essential for oriC/DnaA-independent DNA replication K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D DAQ1742_03604 priB; Primosomal replication protein N K02686 priB; primosomal replication protein N
D DAQ1742_03137 priC; Primosomal replication protein N prime prime K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:daq03250]
D DAQ1742_04118 ppiA; Peptidyl-prolyl cis-trans isomerase PpiA precursor K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:daq02010]
D DAQ1742_01025 sbp; Sulfate and thiosulfate binding protein CysP K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DAQ1742_01026 cysU; Sulfate transport system permease protein CysU K02046 cysU; sulfate/thiosulfate transport system permease protein
D DAQ1742_01027 cysW; Sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D DAQ1742_01028 cysA; Sulfate and thiosulfate import ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D DAQ1742_02779 ssuA; Alkanesulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DAQ1742_01552 atsR_2; Alkanesulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DAQ1742_01570 astR_1; Alkanesulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DAQ1742_02781 ssuC; Alkanesulfonates transport system permease protein K15554 ssuC; sulfonate transport system permease protein
D DAQ1742_01548 astB_2; Alkanesulfonates transport system permease protein K15554 ssuC; sulfonate transport system permease protein
D DAQ1742_01569 astB_1; Alkanesulfonates transport system permease protein K15554 ssuC; sulfonate transport system permease protein
D DAQ1742_02782 ssuB; Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D DAQ1742_01568 astC; Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D DAQ1742_02944 modA; Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) K02020 modA; molybdate transport system substrate-binding protein
D DAQ1742_02943 modB; Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) K02018 modB; molybdate transport system permease protein
D DAQ1742_02942 modC; Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D DAQ1742_02948 modF; Putative molybdenum transport ATP-binding protein modF K05776 modF; molybdate transport system ATP-binding protein
D DAQ1742_01639 sfuA; Ferric iron ABC transporter, iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D DAQ1742_01640 sfuB; Ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D DAQ1742_00996 Ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D DAQ1742_01641 sfuC; Ferric iron ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D DAQ1742_00997 Ferric iron ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D DAQ1742_03845 thiB; Thiamin ABC transporter, substrate-binding component K02064 thiB; thiamine transport system substrate-binding protein
D DAQ1742_03846 thiP; Thiamin ABC transporter, transmembrane component K02063 thiP; thiamine transport system permease protein
D DAQ1742_03847 thiQ; Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D DAQ1742_02040 potF; Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) K11073 potF; putrescine transport system substrate-binding protein
D DAQ1742_02043 potI; Putrescine transport system permease protein PotI (TC 3.A.1.11.2) K11074 potI; putrescine transport system permease protein
D DAQ1742_02042 potH; Putrescine transport system permease protein PotH (TC 3.A.1.11.2) K11075 potH; putrescine transport system permease protein
D DAQ1742_02041 potG; Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D DAQ1742_03494 proX; L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) K02002 proX; glycine betaine/proline transport system substrate-binding protein
D DAQ1742_03493 proW; L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) K02001 proW; glycine betaine/proline transport system permease protein
D DAQ1742_03492 proV; L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D DAQ1742_03763 Various polyols ABC transporter, ATP-binding component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DAQ1742_01186 ganK; ATP-binding component of transport system for galactan K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DAQ1742_01187 ganE; periplasmic binding protein of galactan transport system K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D DAQ1742_01188 ganF; galactan ABC transport system, permease component K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D DAQ1742_01189 ganG; galactan ABC transport system, permease component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D DAQ1742_02463 togB; Sugar-binding protein precursor K10192 togB; oligogalacturonide transport system substrate-binding protein
D DAQ1742_03540 Sugar-binding protein precursor K10192 togB; oligogalacturonide transport system substrate-binding protein
D DAQ1742_02460 togM; Putative ABC sugar transporter K10193 togM; oligogalacturonide transport system permease protein
D DAQ1742_02461 togN; oligogalacturonide ABC transporter, permease component K10194 togN; oligogalacturonide transport system permease protein
D DAQ1742_02462 togA; oligogalacturonide ABC transporter, ATPase component K10195 togA; oligogalacturonide transport system ATP-binding protein
D DAQ1742_03767 aguE_2; alpha 1-4 digalacturonate or N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein K17241 aguE; alpha-1,4-digalacturonate transport system substrate-binding protein
D DAQ1742_03762 aruF_2; alpha 1-4 digalacturonate, ABC transporter, membrane spanning protein K17242 aguF; alpha-1,4-digalacturonate transport system permease protein
D DAQ1742_03761 aruG_2; alpha 1-4 digalacturonate ABC transport system, permease protein K17243 aguG; alpha-1,4-digalacturonate transport system permease protein
D DAQ1742_00391 mlaC; MlaFEDCB phospholipid ABC transporter; maintains OM lipid asymmetry K07323 mlaC; phospholipid transport system substrate-binding protein
D DAQ1742_00390 mlaD; MlaFEDCB phospholipid ABC transporter; maintains OM lipid asymmetry K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D DAQ1742_00389 mlaE; MlaFEDCB phospholipid ABC transporter; maintains OM lipid asymmetry K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D DAQ1742_00392 mlaB; MlaFEDCB phospholipid ABC transporter; maintains OM lipid asymmetry K07122 mlaB; phospholipid transport system transporter-binding protein
D DAQ1742_00388 mlaF; MlaFEDCB phospholipid ABC transporter; maintains OM lipid asymmetry. MlaFEDCB is a predicted ABC import system that probably maintains outer membrane lipid asymmetry by retrograde import of phospholipids from the outer leaflet of the OM K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D DAQ1742_00009 rbsB; Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) K10439 rbsB; ribose transport system substrate-binding protein
D DAQ1742_00008 rbsC; Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) K10440 rbsC; ribose transport system permease protein
D DAQ1742_00007 rbsA; Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D DAQ1742_00006 rbsD; Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D DAQ1742_02200 araF; L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) K10537 araF; L-arabinose transport system substrate-binding protein
D DAQ1742_02198 araH; L-arabinose transport system permease protein (TC 3.A.1.2.2) K10538 araH; L-arabinose transport system permease protein
D DAQ1742_02199 araG; L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D DAQ1742_03083 mglB; Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) K10540 mglB; methyl-galactoside transport system substrate-binding protein
D DAQ1742_03086 mglC; Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) K10541 mglC; methyl-galactoside transport system permease protein
D DAQ1742_03085 mglA; Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D DAQ1742_00804 ibpA; Inositol transport system sugar-binding protein K17208 ibpA; inositol transport system substrate-binding protein
D DAQ1742_00806 iatP; Inositol transport system permease protein K17209 iatP; inositol transport system permease protein
D DAQ1742_00805 iatA; Inositol transport system ATP-binding protein K17210 iatA; inositol transport system ATP-binding protein
D DAQ1742_00138 ugpB; Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3) K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D DAQ1742_00139 ugpA; Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D DAQ1742_00140 ugpE; Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3) K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D DAQ1742_00141 ugpC; Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3) K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D DAQ1742_04472 pstS; Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) K02040 pstS; phosphate transport system substrate-binding protein
D DAQ1742_03251 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) K02040 pstS; phosphate transport system substrate-binding protein
D DAQ1742_04471 pstC; Phosphate transport system permease protein PstC (TC 3.A.1.7.1) K02037 pstC; phosphate transport system permease protein
D DAQ1742_01155 pstC; Phosphate transport system permease protein PstC (TC 3.A.1.7.1) K02037 pstC; phosphate transport system permease protein
D DAQ1742_04470 pstA; Phosphate transport system permease protein PstA (TC 3.A.1.7.1) K02038 pstA; phosphate transport system permease protein
D DAQ1742_01156 pstA; Phosphate transport system permease protein PstA (TC 3.A.1.7.1) K02038 pstA; phosphate transport system permease protein
D DAQ1742_04469 pstB; Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D DAQ1742_01157 pstB; Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D DAQ1742_01407 hisJ; Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D DAQ1742_01336 hisM; Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) K10015 hisM; histidine transport system permease protein
D DAQ1742_01335 hisQ; Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) K10016 hisQ; histidine transport system permease protein
D DAQ1742_01337 hisP; Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_01334 hisJ; Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) K10014 hisJ; histidine transport system substrate-binding protein
D DAQ1742_01726 glnH; Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) K10036 glnH; glutamine transport system substrate-binding protein
D DAQ1742_01725 glnP; Glutamine transport membrane-spanning protein K10037 glnP; glutamine transport system permease protein
D DAQ1742_01724 glnQ; Glutamine transport ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_02046 artJ; Arginine ABC transporter, periplasmic arginine-binding protein ArtJ K09996 artJ; arginine transport system substrate-binding protein
D DAQ1742_02049 artI; Arginine ABC transporter, periplasmic arginine-binding protein ArtI K09997 artI; arginine transport system substrate-binding protein
D DAQ1742_02047 artM; Arginine ABC transporter, permease protein ArtM K09998 artM; arginine transport system permease protein
D DAQ1742_02048 artQ; Arginine ABC transporter, permease protein ArtQ K09999 artQ; arginine transport system permease protein
D DAQ1742_02050 artP; Arginine ABC transporter, ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_03037 gltI; Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D DAQ1742_03040 gltK; Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4) K10002 gltK; glutamate/aspartate transport system permease protein
D DAQ1742_03039 gltJ; Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4) K10003 gltJ; glutamate/aspartate transport system permease protein
D DAQ1742_03041 gltL; Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_04218 aapJ; amino-acid transporter subunit; periplasmic-binding component of ABC superfamily K09969 aapJ; general L-amino acid transport system substrate-binding protein
D DAQ1742_00337 yhdW; Glutamate Aspartate periplasmic binding protein precursor (TC 3.A.1.3.4) K09969 aapJ; general L-amino acid transport system substrate-binding protein
D DAQ1742_04219 aapQ; amino-acid transporter subunit; membrane component of ABC superfamily K09970 aapQ; general L-amino acid transport system permease protein
D DAQ1742_00336 yhdX; Glutamate Aspartate transport system permease protein (TC 3.A.1.3.4) K09970 aapQ; general L-amino acid transport system permease protein
D DAQ1742_04220 aapM; amino-acid transporter subunit; membrane component of ABC superfamily K09971 aapM; general L-amino acid transport system permease protein
D DAQ1742_00335 yhdY; Glutamate Aspartate transport system permease protein (TC 3.A.1.3.4) K09971 aapM; general L-amino acid transport system permease protein
D DAQ1742_04221 aapP; amino acid ABC transporter, ATP-binding protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_00334 yhdZ; ABC-type polar amino acid transport system, ATPase component K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_00339 fliY; Cystine-binding periplasmic protein precursor K02424 tcyA; L-cystine transport system substrate-binding protein
D DAQ1742_00338 yecS; Cystine ABC transporter, permease protein K10009 tcyB; L-cystine transport system permease protein
D DAQ1742_04225 Arginine ABC transporter, periplasmic arginine-binding protein ArtJ K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D DAQ1742_04224 Amino acid ABC transporter, permease protein K16962 yxeN; putative S-methylcysteine transport system permease protein
D DAQ1742_04223 ABC-type polar amino acid transport system, ATPase component K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein
D DAQ1742_00118 livK; High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DAQ1742_00828 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DAQ1742_00119 livH; High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) K01997 livH; branched-chain amino acid transport system permease protein
D DAQ1742_00120 livM; Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) K01998 livM; branched-chain amino acid transport system permease protein
D DAQ1742_00121 livG; Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DAQ1742_00122 livF; Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DAQ1742_03518 metQ; Methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D DAQ1742_02024 Methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D DAQ1742_01561 Methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D DAQ1742_03517 metI; Methionine ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D DAQ1742_02026 metI2; Methionine ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D DAQ1742_01563 Methionine ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D DAQ1742_03516 metN; Methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D DAQ1742_02025 metN2; Methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D DAQ1742_01562 Methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D DAQ1742_02251 oppA; Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) K15580 oppA; oligopeptide transport system substrate-binding protein
D DAQ1742_02676 mppA; Periplasmic Murein Peptide-Binding Protein MppA K15580 oppA; oligopeptide transport system substrate-binding protein
D DAQ1742_02714 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein, OppA family K15580 oppA; oligopeptide transport system substrate-binding protein
D DAQ1742_02249 oppB; Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) K15581 oppB; oligopeptide transport system permease protein
D DAQ1742_02248 oppC; Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) K15582 oppC; oligopeptide transport system permease protein
D DAQ1742_02247 oppD; Oligopeptide transport system permease protein OppD (TC 3.A.1.5.1) K15583 oppD; oligopeptide transport system ATP-binding protein
D DAQ1742_02246 oppF; Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) K10823 oppF; oligopeptide transport system ATP-binding protein
D DAQ1742_01648 dppA; Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) K12368 dppA; dipeptide transport system substrate-binding protein
D DAQ1742_00085 dppA; Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) K12368 dppA; dipeptide transport system substrate-binding protein
D DAQ1742_00086 dppB; Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) K12369 dppB; dipeptide transport system permease protein
D DAQ1742_00087 dppC; Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) K12370 dppC; dipeptide transport system permease protein
D DAQ1742_00088 dppD; Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) K12371 dppD; dipeptide transport system ATP-binding protein
D DAQ1742_00089 dppF; Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) K12372 dppF; dipeptide transport system ATP-binding protein
D DAQ1742_02694 sapA; Peptide transport periplasmic protein sapA (TC 3.A.1.5.5) K19226 sapA; cationic peptide transport system substrate-binding protein
D DAQ1742_02695 sapB; Peptide transport system permease protein SapB K19227 sapB; cationic peptide transport system permease protein
D DAQ1742_02696 sapC; Peptide transport system permease protein sapC (TC 3.A.1.5.5) K19228 sapC; cationic peptide transport system permease protein
D DAQ1742_02697 sapD; Peptide transport system ATP-binding protein SapD (TC 3.A.1.5.5) K19229 sapD; cationic peptide transport system ATP-binding protein
D DAQ1742_02698 sapF; Peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein
D DAQ1742_01587 nikA; Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) K15584 nikA; nickel transport system substrate-binding protein
D DAQ1742_01588 nikB; Nickel transport system permease protein NikB (TC 3.A.1.5.3) K15585 nikB; nickel transport system permease protein
D DAQ1742_01589 nikC; Nickel transport system permease protein NikC (TC 3.A.1.5.3) K15586 nikC; nickel transport system permease protein
D DAQ1742_01590 Oligopeptide transport system permease protein (TC 3.A.1.5.1) K15587 nikD; nickel transport system ATP-binding protein [EC:7.2.2.11]
D DAQ1742_01591 nikE; Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3) K10824 nikE; nickel transport system ATP-binding protein [EC:7.2.2.11]
D DAQ1742_00204 gsiB; glutathione transport system substrate-binding protein; GsiABCD is an ABC transporter system K13889 gsiB; glutathione transport system substrate-binding protein
D DAQ1742_00203 gsiC; glutathione transport system permease protein; GsiABCD is an ABC transporter system K13890 gsiC; glutathione transport system permease protein
D DAQ1742_00202 gsiD; Glutathione ABC transporter permease; GsiABCD is an ABC transporter system K13891 gsiD; glutathione transport system permease protein
D DAQ1742_00205 gsiA; glutathione transport system ATP-binding protein; GsiABCD is an ABC transporter system K13892 gsiA; glutathione transport system ATP-binding protein
D DAQ1742_01988 yejA; Microcin C transporter YejABEF, periplasmic binding protein; ABC family; regulated by rydC sRNA K13893 yejA; microcin C transport system substrate-binding protein
D DAQ1742_01987 yejB; Microcin C transporter YejABEF, permease subunit; ABC family; regulated by rydC sRNA K13894 yejB; microcin C transport system permease protein
D DAQ1742_01986 yejE; Microcin C transporter YejABEF, permease subunit; ABC family; regulated by rydC sRNA K13895 yejE; microcin C transport system permease protein
D DAQ1742_01985 yejF; Microcin C transporter YejABEF, ATP-binding subunit; ABC family; regulated by rydC sRNA K13896 yejF; microcin C transport system ATP-binding protein
D DAQ1742_01270 cbuB; Periplasmic component of chrysobactin ABC transporter K23185 fepB; ferric enterobactin transport system substrate-binding protein
D DAQ1742_01268 cbuD; Ferric chrysobactin permease component K23186 fepD; iron-siderophore transport system permease protein
D DAQ1742_01267 cbuG; Ferric chrysobactin permease component K23187 fepG; iron-siderophore transport system permease protein
D DAQ1742_01265 cbuC; ATP binding component of ferric chrysobactin ABC transporter K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D DAQ1742_01020 btuF; Vitamin B12 ABC transporter, B12-binding component BtuF K06858 btuF; vitamin B12 transport system substrate-binding protein
D DAQ1742_02805 btuC; Vitamin B12 ABC transporter, permease component BtuC K06073 btuC; vitamin B12 transport system permease protein
D DAQ1742_02803 btuD; Vitamin B12 ABC transporter, ATPase component BtuD K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D DAQ1742_02301 znuA; Zinc ABC transporter, periplasmic-binding protein ZnuA K09815 znuA; zinc transport system substrate-binding protein
D DAQ1742_02303 znuB; Zinc ABC transporter, inner membrane permease protein ZnuB K09816 znuB; zinc transport system permease protein
D DAQ1742_02302 znuC; Zinc ABC transporter, ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D DAQ1742_01822 Substrate-specific component NikM of nickel ECF transporter K02007 cbiM; cobalt/nickel transport system permease protein
D DAQ1742_01824 ATPase component NikO of energizing module of nickel ECF transporter K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D DAQ1742_01821 Additional periplasmic component NikK of nickel ECF transporter K10094 cbiK; nickel transport protein
D DAQ1742_01823 Additional component NikL of nickel ECF transporter K16915 cbiL; nickel transport protein
D DAQ1742_00758 O-antigen export system permease protein RfbD K09690 wzm; homopolymeric O-antigen transport system permease protein
D DAQ1742_00759 Teichoic acid export ATP-binding protein TagH K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D DAQ1742_00340 Teichoic acid export ATP-binding protein TagH K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D DAQ1742_02809 lolE; Lipoprotein releasing system transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D DAQ1742_02811 lolC; Lipoprotein releasing system transmembrane protein LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D DAQ1742_02810 lolD; Lipoprotein releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D DAQ1742_00496 lptF; Lipopolysaccharide export ABC permease; LptBFGC export complex K07091 lptF; lipopolysaccharide export system permease protein
D DAQ1742_00497 lptG; Lipopolysaccharide export ABC permease; LptBFGC export complex K11720 lptG; lipopolysaccharide export system permease protein
D DAQ1742_00381 lptB; Lipopolysaccharide ABC transporter, ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D DAQ1742_00115 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D DAQ1742_00114 ftsE; Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) K09812 ftsE; cell division transport system ATP-binding protein
D DAQ1742_02113 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D DAQ1742_03151 mdlA; predicted ATP-binding component of multidrug ABC transporter K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D DAQ1742_03150 mdlB; predicted ATP-binding component of multidrug ABC transporter K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D DAQ1742_01061 Type I secretion system ATPase, LssB family LapB K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D DAQ1742_02172 prtD; ABC-type protease exporter, ATP-binding component PrtD/AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D DAQ1742_02062 cydC; membrane and ATP-binding components of an ABC superfamily cysteine transporter K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D DAQ1742_02063 cydD; cysteine transporter subunit of ABC superfamily. glutathione/cysteine ABC transporter permease/ATPase; exports cysteine to periplasm as required for cytochrome assembly K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D DAQ1742_00861 macB; Macrolide export ATP-binding/permease protein MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D DAQ1742_01455 ABC transporter ATP-binding protein K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
D DAQ1742_00853 yddA; Hypothetical ABC transporter ATP-binding protein yddA K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D DAQ1742_00720 ABC transporter ATP-binding protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:daq02060]
D DAQ1742_00866 ptsI; Phosphoenolpyruvate-protein phosphotransferase of PTS system K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D DAQ1742_00867 ptsH; Phosphocarrier protein of PTS system K02784 ptsH; phosphocarrier protein HPr
D DAQ1742_00865 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D DAQ1742_02833 ptsG; PTS system, glucose-specific IIB component / PTS system, glucose-specific IIC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D DAQ1742_03015 nagE; PTS system, N-acetylglucosamine-specific IIA component / PTS system, N-acetylglucosamine-specific IIB component / PTS system, N-acetylglucosamine-specific IIC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D DAQ1742_00440 scrA; PTS system, sucrose-specific IIB component / PTS system, sucrose-specific IIC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D DAQ1742_02753 arbF; PTS system, beta-glucoside-specific IIB component / PTS system, beta-glucoside-specific IIC component / PTS system, beta-glucoside-specific IIA component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D DAQ1742_04445 PTS system, beta-glucoside-specific IIB component / PTS system, beta-glucoside-specific IIC component / PTS system, beta-glucoside-specific IIA component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D DAQ1742_03638 celC; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D DAQ1742_03634 celA; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D DAQ1742_03636 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D DAQ1742_00324 manX; PTS system, N-acetylgalactosamine-and galactosamine-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D DAQ1742_00327 agaV; PTS system, N-acetylgalactosamine-specific IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D DAQ1742_00328 PTS system, N-acetylgalactosamine-specific IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D DAQ1742_00329 agaC; PTS system, N-acetylgalactosamine-specific IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D DAQ1742_04086 ulaC; Ascorbate-specific PTS system, EIIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D DAQ1742_04087 ulaA; Ascorbate-specific PTS system, EIIC component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D DAQ1742_02161 sgaT; Putative integral membrane protein, induced in presence of PGA K03475 ulaA; ascorbate PTS system EIIC component
D DAQ1742_01995 fruB; Fructose-specific phosphocarrier protein HPr / PTS system, fructose-specific IIA component K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D DAQ1742_01997 fruA; PTS system, fructose-specific IIB component / PTS system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D DAQ1742_01996 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D DAQ1742_03360 ptsP; Phosphoenolpyruvate-protein phosphotransferase, nitrogen regulation associated K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D DAQ1742_00376 npr; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) K08485 ptsO; phosphocarrier protein NPr
D DAQ1742_00378 ptsN; PTS system nitrogen-specific IIA component, PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:daq03070]
D DAQ1742_00417 tolC; Type I secretion outer membrane transport channel K12340 tolC; outer membrane protein
D DAQ1742_00197 Outer membrane efflux family protein K12340 tolC; outer membrane protein
D DAQ1742_02371 hrcC; Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) K03219 yscC; type III secretion protein C
D DAQ1742_02386 hrpJ; type III secretion protein HrpJ K04058 yscW; type III secretion protein W
D DAQ1742_02379 hrcJ; Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) K03222 yscJ; type III secretion protein J
D DAQ1742_02393 hrcR; Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) K03226 yscR; type III secretion protein R
D DAQ1742_02394 hrcS; Type III secretion inner membrane protein (YscS,homologous to flagellar export components) K03227 yscS; type III secretion protein S
D DAQ1742_02395 hrcT; Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) K03228 yscT; type III secretion protein T
D DAQ1742_02396 hrcU; Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) K03229 yscU; type III secretion protein U
D DAQ1742_02387 hrcV; Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) K03230 yscV; type III secretion protein V
D DAQ1742_02389 hrcN; Type III secretion cytoplasmic ATP synthase, YscN,SpaL,MxiB,HrcN,EscN) K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D DAQ1742_02392 hrcQ; type III secretion protein HrcQb K03225 yscQ; type III secretion protein Q
D DAQ1742_02377 hrpE; Type III secretion system ATPase associated subunit HrpE K03223 yscL; type III secretion protein L
D DAQ1742_01241 outD; General secretion pathway protein D K02453 gspD; general secretion pathway protein D
D DAQ1742_01236 outS; Lipoprotein outS precursor K02465 gspS; general secretion pathway protein S
D DAQ1742_01240 outC; General secretion pathway protein C K02452 gspC; general secretion pathway protein C
D DAQ1742_01243 outF; General secretion pathway protein F K02455 gspF; general secretion pathway protein F
D DAQ1742_01244 outG; General secretion pathway protein G K02456 gspG; general secretion pathway protein G
D DAQ1742_01245 outH; General secretion pathway protein H K02457 gspH; general secretion pathway protein H
D DAQ1742_01246 outI; General secretion pathway protein I K02458 gspI; general secretion pathway protein I
D DAQ1742_01247 outJ; General secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D DAQ1742_01248 outK; General secretion pathway protein K K02460 gspK; general secretion pathway protein K
D DAQ1742_01249 outL; General secretion pathway protein L K02461 gspL; general secretion pathway protein L
D DAQ1742_01250 outM; General secretion pathway protein M K02462 gspM; general secretion pathway protein M
D DAQ1742_01242 outE; General secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D DAQ1742_01251 outO; Leader peptidase (Prepilin peptidase) / N-methyltransferase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D DAQ1742_03239 secD; Protein-export membrane protein SecD (TC 3.A.5.1.1) K03072 secD; preprotein translocase subunit SecD
D DAQ1742_03238 secF; Protein-export membrane protein SecF (TC 3.A.5.1.1) K03074 secF; preprotein translocase subunit SecF
D DAQ1742_00285 secE; Preprotein translocase subunit SecE (TC 3.A.5.1.1) K03073 secE; preprotein translocase subunit SecE
D DAQ1742_00692 secG; Preprotein translocase subunit SecG (TC 3.A.5.1.1) K03075 secG; preprotein translocase subunit SecG
D DAQ1742_04032 secY; Preprotein translocase secY subunit (TC 3.A.5.1.1) K03076 secY; preprotein translocase subunit SecY
D DAQ1742_03240 yajC; Preprotein translocase subunit YajC (TC 3.A.5.1.1) K03210 yajC; preprotein translocase subunit YajC
D DAQ1742_04441 yidC; Inner membrane protein translocase component YidC, long form K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DAQ1742_03809 secA; Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DAQ1742_03810 secM; regulator of secA translation K13301 secM; secretion monitor
D DAQ1742_00113 ftsY; Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) K03110 ftsY; fused signal recognition particle receptor
D DAQ1742_00238 secB; Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) K03071 secB; preprotein translocase subunit SecB
D DAQ1742_00963 ffh; Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D DAQ1742_00257 tatA; Twin-arginine translocation protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D DAQ1742_00258 tatB; Twin-arginine translocation protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D DAQ1742_00259 tatC; Twin-arginine translocation protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D DAQ1742_03056 tatE; Twin-arginine translocation protein TatE K03425 tatE; sec-independent protein translocase protein TatE
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:daq02020]
D DAQ1742_03252 phoR; Phosphate regulon sensor protein PhoR (SphS) K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D DAQ1742_03254 phoB; Phosphate regulon transcriptional regulatory protein PhoB (SphR) K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D DAQ1742_04472 pstS; Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) K02040 pstS; phosphate transport system substrate-binding protein
D DAQ1742_03251 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) K02040 pstS; phosphate transport system substrate-binding protein
D DAQ1742_02492 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D DAQ1742_02491 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D DAQ1742_04141 envZ; Osmolarity sensory histidine kinase EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D DAQ1742_04142 ompR; Two-component system response regulator OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D DAQ1742_02789 ompF_1; Outer membrane protein F precursor K09476 ompF; outer membrane pore protein F
D DAQ1742_02791 ompF_2; Outer membrane protein F precursor K09476 ompF; outer membrane pore protein F
D DAQ1742_00151 cpxA; Copper sensory histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D DAQ1742_00152 cpxR; Copper-sensing two-component system response regulator CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D DAQ1742_00608 yqjB; Uncharacterized protein YqjB K25864 mzrA; modulator protein MzrA
D DAQ1742_02595 rstB; Sensory histidine kinase in two-component regulatory system with RstA K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D DAQ1742_02594 rstA; DNA-binding response regulator in two-component regulatory system with RstB K07661 rstA; two-component system, OmpR family, response regulator RstA
D DAQ1742_01023 degP; serine endoprotease (protease Do), membrane-associated K04771 degP; serine protease Do [EC:3.4.21.107]
D DAQ1742_01129 baeS; Sensory histidine kinase BaeS K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D DAQ1742_01128 baeR; Response regulator BaeR K07664 baeR; two-component system, OmpR family, response regulator BaeR
D DAQ1742_01133 mdtA; Multidrug efflux system, subunit A K07799 mdtA; membrane fusion protein, multidrug efflux system
D DAQ1742_01132 mdtB; Multidrug transporter MdtB K07788 mdtB; multidrug efflux pump
D DAQ1742_01131 mdtC; Multidrug transporter MdtC K07789 mdtC; multidrug efflux pump
D DAQ1742_01130 mdtD; Multidrug transporter MdtD K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D DAQ1742_04065 pmrB; Sensor protein basS/pmrB K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D DAQ1742_04064 pmrA; Transcriptional regulatory protein basR/pmrA K07771 basR; two-component system, OmpR family, response regulator BasR
D DAQ1742_04458 arnB; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D DAQ1742_02954 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF
D DAQ1742_02956 cusB; Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family K07798 cusB; membrane fusion protein, copper/silver efflux system
D DAQ1742_02957 cusA; Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA K07787 cusA; copper/silver efflux system protein
D DAQ1742_01428 flhD; Flagellar transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D DAQ1742_01429 flhC; Flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D DAQ1742_02895 fliC; Flagellar biosynthesis protein FliC K02406 fliC; flagellin
D DAQ1742_02882 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D DAQ1742_01430 motA; Flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA
D DAQ1742_03002 kdpD; Osmosensitive K+ channel histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D DAQ1742_03003 kdpE; sensor histidine kinase K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D DAQ1742_02999 kdpA; Potassium-transporting ATPase A chain (TC 3.A.3.7.1) K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D DAQ1742_03000 kdpB; Potassium-transporting ATPase B chain (TC 3.A.3.7.1) K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D DAQ1742_03001 kdpC; Potassium-transporting ATPase C chain (TC 3.A.3.7.1) K01548 kdpC; potassium-transporting ATPase KdpC subunit
D DAQ1742_00406 arcB; Aerobic respiration control sensor protein arcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D DAQ1742_03902 arcA; Aerobic respiration control protein arcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D DAQ1742_04436 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D DAQ1742_03281 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_04320 vfmO; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_04321 vfmP; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_03282 dltB; D-alanyl transfer protein DltB K03739 dltB; membrane protein involved in D-alanine export
D DAQ1742_03280 dltC; D-alanine carrier protein DltC K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D DAQ1742_03284 dltD; Poly(glycerophosphate chain) D-alanine transfer protein DltD K03740 dltD; D-alanine transfer protein
D DAQ1742_02096 citA; Sensor kinase CitA K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D DAQ1742_02095 citB; Transcriptional regulatory protein CitB, DpiA K07702 dpiA; two-component system, CitB family, response regulator CitB
D DAQ1742_02099 citC_2; [Citrate [pro-3S]-lyase] ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]
D DAQ1742_01531 citC_2; [Citrate [pro-3S]-lyase] ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]
D DAQ1742_02100 citD_2; Citrate lyase gamma chain, acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein)
D DAQ1742_01532 citD_2; Citrate lyase gamma chain, acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein)
D DAQ1742_02101 citE_2; Citrate lyase beta chain K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D DAQ1742_01533 citE_2; Citrate lyase beta chain K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D DAQ1742_02102 citF_2; Citrate lyase alpha chain K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10]
D DAQ1742_01534 citF_2; Citrate lyase alpha chain K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10]
D DAQ1742_02103 citX; Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase K05964 citX; holo-ACP synthase [EC:2.7.7.61]
D DAQ1742_02104 citG; 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D DAQ1742_01535 citG; 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D DAQ1742_00081 dcuS; Fumarate respiration sensor kinase protein DcuS K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3]
D DAQ1742_00082 dcuR; Fumarate respiration transcriptional regulator DcuR K07703 dcuR; two-component system, CitB family, response regulator DcuR
D DAQ1742_01503 dcuB; C4-dicarboxylate transporter DcuB K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D DAQ1742_01605 sfcA; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D DAQ1742_00083 maeN; Malate Na(+) symporter, anaerobiosis K11616 maeN; malate:Na+ symporter
D DAQ1742_02528 narX; Nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D DAQ1742_02529 narL; Nitrate/nitrite response regulator protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D DAQ1742_02524 narG; Respiratory nitrate reductase alpha chain K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D DAQ1742_02523 narH; Respiratory nitrate reductase beta chain K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D DAQ1742_02521 narI; Respiratory nitrate reductase gamma chain K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D DAQ1742_02522 narJ; Respiratory nitrate reductase delta chain K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D DAQ1742_01538 fdnG; Formate dehydrogenase N alpha subunit K08348 fdnG; formate dehydrogenase-N, alpha subunit [EC:1.17.5.3]
D DAQ1742_01540 fdnI; formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible K08350 fdnI; formate dehydrogenase-N, gamma subunit
D DAQ1742_03982 frdA; Succinate dehydrogenase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DAQ1742_03983 frdB; Succinate dehydrogenase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DAQ1742_03984 frdC; Fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D DAQ1742_03985 frdD; Fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D DAQ1742_00624 uhpC; sensor for external glucose-6-phosphate and transport of glucose-6-phosphate K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D DAQ1742_00623 uhpB; Sensor histidine protein kinase UhpB, glucose-6-phosphate specific K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D DAQ1742_00622 uhpA; DNA-binding response regulator in two-component regulatory system wtih UhpB K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D DAQ1742_00625 uhpT; Hexose phosphate transport protein UhpT K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D DAQ1742_03519 rcsF; predicted outer membrane protein, signal K06080 rcsF; RcsF protein
D DAQ1742_03111 rcsC; Two-component sensor protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D DAQ1742_03109 rcsD; Two-component sensor protein RcsD K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D DAQ1742_03110 rcsB; DNA-binding capsular synthesis response regulator RcsB K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D DAQ1742_03553 gacS; BarA sensory histidine kinase (= VarS = GacS) K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D DAQ1742_01872 gacA; Response regulator of the two-component transcriptional regulatory system UvrY-BarA (ExpA-ExpS, GacA-GacS) K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D DAQ1742_00952 csrA; Carbon storage regulator K03563 csrA; carbon storage regulator
D DAQ1742_00919 fimC; chaperone FimC K07346 fimC; fimbrial chaperone protein
D DAQ1742_00920 fimD; type 1 fimbriae anchoring protein FimD K07347 fimD; outer membrane usher protein
D DAQ1742_03328 glnD; [Protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D DAQ1742_01073 glnB; Nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D DAQ1742_00028 glnL; Nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D DAQ1742_00027 glnG; Nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D DAQ1742_00030 glnA; Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DAQ1742_00099 dctA; Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate K11103 dctA; aerobic C4-dicarboxylate transport protein
D DAQ1742_00380 rpoN; RNA polymerase sigma-54 factor RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D DAQ1742_01070 qseE; Putative sensor-like histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D DAQ1742_01072 qseF; DNA-binding response regulator in two-component system binds glmY promoter, glmY is a sRNA controling glmS involved in the synthesis of bacterial cell wall precursor K07715 glrR; two-component system, NtrC family, response regulator GlrR
D DAQ1742_01370 hybO; Uptake hydrogenase small subunit precursor K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D DAQ1742_01373 hybC; Uptake hydrogenase large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D DAQ1742_01435 cheR; Chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D DAQ1742_00136 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_01413 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00538 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03783 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03607 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00067 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00130 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00133 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00135 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00459 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_01391 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02693 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03732 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02016 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02017 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02863 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03011 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03123 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03261 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02241 FIG00613814: hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_01434 cheD; Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_03616 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_03580 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_02134 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_03965 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_02541 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_04357 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_02403 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_03610 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_02160 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_03911 chmX; Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D DAQ1742_00568 trg; Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D DAQ1742_01426 Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D DAQ1742_02581 Aerotaxis sensor receptor protein K03776 aer; aerotaxis receptor
D DAQ1742_03563 Aerotaxis sensor receptor protein K03776 aer; aerotaxis receptor
D DAQ1742_01433 cheW; Positive regulator of CheA protein activity (CheW) K03408 cheW; purine-binding chemotaxis protein CheW
D DAQ1742_01432 cheA; Signal transduction histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DAQ1742_01437 cheY; Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D DAQ1742_01436 cheB; Chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D DAQ1742_01581 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D DAQ1742_03041 gltL; Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_03040 gltK; Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4) K10002 gltK; glutamate/aspartate transport system permease protein
D DAQ1742_03039 gltJ; Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4) K10003 gltJ; glutamate/aspartate transport system permease protein
D DAQ1742_03037 gltI; Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D DAQ1742_04083 crp; Cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DAQ1742_02979 cydA; Cytochrome d ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D DAQ1742_01629 putative Cytochrome bd2, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D DAQ1742_02978 cydB; Cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D DAQ1742_01630 putative Cytochrome bd2, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D DAQ1742_02977 cydX; cytochrome d-I terminal oxidase-CydX subunit K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D DAQ1742_00417 tolC; Type I secretion outer membrane transport channel K12340 tolC; outer membrane protein
D DAQ1742_00197 Outer membrane efflux family protein K12340 tolC; outer membrane protein
D DAQ1742_04243 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D DAQ1742_04242 rffD; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D DAQ1742_01074 pemA; Pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D DAQ1742_01422 cel5Z; endo-1,4-beta-glucanase precursor,Cellulase involved in cellulose degradation K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D DAQ1742_00723 fecI; RNA polymerase sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D DAQ1742_00722 fecR; Fe2+-dicitrate sensor, membrane component, anti-FecI sigma factor K07165 fecR; transmembrane sensor
D DAQ1742_01442 flgM; Negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D DAQ1742_03374 speC; Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:daq02024]
D DAQ1742_00960 luxS; S-ribosylhomocysteine lyase / Autoinducer-2 production protein LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D DAQ1742_03944 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D DAQ1742_02228 trpE; Anthranilate synthase, aminase component K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D DAQ1742_02229 Glutamine amidotransferase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D DAQ1742_02027 phaG; (R)-3-hydroxydecanoyl-ACP:CoA transacylase K18100 rhlA; rhamnosyltransferase subunit A [EC:2.4.1.-]
D DAQ1742_01415 RhlB, TDP-rhamnosyltransferase 1 K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-]
D DAQ1742_02768 aroH; 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DAQ1742_02961 aroG; 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DAQ1742_01807 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DAQ1742_00970 aroF; 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DAQ1742_01070 qseE; Putative sensor-like histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D DAQ1742_01072 qseF; DNA-binding response regulator in two-component system binds glmY promoter, glmY is a sRNA controling glmS involved in the synthesis of bacterial cell wall precursor K07715 glrR; two-component system, NtrC family, response regulator GlrR
D DAQ1742_01428 flhD; Flagellar transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D DAQ1742_01429 flhC; Flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D DAQ1742_03003 kdpE; sensor histidine kinase K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D DAQ1742_02508 potD; ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D DAQ1742_03646 phnS; Putative ABC-type 2-aminoethylphosphonate transport system, periplasmic component K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D DAQ1742_02506 potC; Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D DAQ1742_03643 phnV2; ABC-type 2-aminoethylphosphonate transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D DAQ1742_02507 potB; Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D DAQ1742_03644 phnV1; ABC-type 2-aminoethylphosphonate transport system, permease component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D DAQ1742_02513 ydcT; Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D DAQ1742_03642 potA; Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D DAQ1742_00118 livK; High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DAQ1742_00828 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DAQ1742_00119 livH; High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) K01997 livH; branched-chain amino acid transport system permease protein
D DAQ1742_00120 livM; Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) K01998 livM; branched-chain amino acid transport system permease protein
D DAQ1742_00121 livG; Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DAQ1742_00122 livF; Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DAQ1742_04313 Homoserine lactone synthase YpeI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D DAQ1742_04314 expR; N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D DAQ1742_04174 cpmA; Carbapenam-3-carboxylate synthase K18316 cpmA; carbapenam-3-carboxylate synthase [EC:6.3.3.6]
D DAQ1742_04175 cpmB; CpmB protein involved in carbapenem biosynthesis K18317 cpmB; carboxymethylproline synthase [EC:2.3.1.226]
D DAQ1742_04176 cpmC; CpmC protein involved in carbapenem biosynthesis K18315 cpmC; (5R)-carbapenem-3-carboxylate synthase [EC:1.14.20.3]
D DAQ1742_04177 cpmD; CpmD protein involved in carbapenem biosynthesis K18318 cpmD; carbapenem biosynthesis protein, putative proline dehydrogenase [EC:1.5.-.-]
D DAQ1742_04112 pelB; Pectate lyase B precursor K01728 pel; pectate lyase [EC:4.2.2.2]
D DAQ1742_04113 pelC; Pectate lyase C precursor K01728 pel; pectate lyase [EC:4.2.2.2]
D DAQ1742_01076 pelD; Pectate lyase precursor K01728 pel; pectate lyase [EC:4.2.2.2]
D DAQ1742_01077 pelA; Pectate lyase A precursor K01728 pel; pectate lyase [EC:4.2.2.2]
D DAQ1742_03833 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_02437 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_04390 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_04403 O-succinylbenzoic acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_02886 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_04083 crp; Cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DAQ1742_00602 zur; Zinc uptake regulation protein ZUR K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D DAQ1742_02713 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D DAQ1742_03234 ribD; Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D DAQ1742_02251 oppA; Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) K15580 oppA; oligopeptide transport system substrate-binding protein
D DAQ1742_02676 mppA; Periplasmic Murein Peptide-Binding Protein MppA K15580 oppA; oligopeptide transport system substrate-binding protein
D DAQ1742_02714 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein, OppA family K15580 oppA; oligopeptide transport system substrate-binding protein
D DAQ1742_02249 oppB; Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) K15581 oppB; oligopeptide transport system permease protein
D DAQ1742_02248 oppC; Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) K15582 oppC; oligopeptide transport system permease protein
D DAQ1742_02247 oppD; Oligopeptide transport system permease protein OppD (TC 3.A.1.5.1) K15583 oppD; oligopeptide transport system ATP-binding protein
D DAQ1742_02246 oppF; Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) K10823 oppF; oligopeptide transport system ATP-binding protein
D DAQ1742_01736 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_02583 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_04407 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_01819 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_02426 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_00185 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_00548 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_01573 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_00465 ophA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_01737 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_02586 Dipeptide transport system permease protein; putative hemin permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_04408 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_01820 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_02424 Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_00186 ddpB; Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_00547 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_01576 Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_00466 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_01738 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_02585 Dipeptide transport system permease protein, DppC-like K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_04409 Dipeptide transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_02423 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_00187 ddpC; Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_00546 Predicted dipeptide transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_01577 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_00467 Nucleoside ABC transporter, permease protein 1 K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_02584 Methionine ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_01816 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_02422 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_04410 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_00188 ddpD; Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_00545 Predicted dipeptide transport ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_01578 Putative glutathione transporter, ATP-binding component K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_00468 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_01740 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_01817 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DAQ1742_04441 yidC; Inner membrane protein translocase component YidC, long form K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DAQ1742_00285 secE; Preprotein translocase subunit SecE (TC 3.A.5.1.1) K03073 secE; preprotein translocase subunit SecE
D DAQ1742_00692 secG; Preprotein translocase subunit SecG (TC 3.A.5.1.1) K03075 secG; preprotein translocase subunit SecG
D DAQ1742_04032 secY; Preprotein translocase secY subunit (TC 3.A.5.1.1) K03076 secY; preprotein translocase subunit SecY
D DAQ1742_03240 yajC; Preprotein translocase subunit YajC (TC 3.A.5.1.1) K03210 yajC; preprotein translocase subunit YajC
D DAQ1742_03809 secA; Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DAQ1742_00113 ftsY; Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) K03110 ftsY; fused signal recognition particle receptor
D DAQ1742_00238 secB; Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) K03071 secB; preprotein translocase subunit SecB
D DAQ1742_00963 ffh; Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:daq02030]
D DAQ1742_00136 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_01413 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00538 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03783 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03607 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00067 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00130 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00133 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00135 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00459 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_01391 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02693 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03732 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02016 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02017 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02863 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03011 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03123 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03261 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02241 FIG00613814: hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_01434 cheD; Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_03616 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_03580 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_02134 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_03965 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_02541 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_04357 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_02403 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_03610 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_02160 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_03911 chmX; Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D DAQ1742_00568 trg; Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D DAQ1742_01426 Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D DAQ1742_02581 Aerotaxis sensor receptor protein K03776 aer; aerotaxis receptor
D DAQ1742_03563 Aerotaxis sensor receptor protein K03776 aer; aerotaxis receptor
D DAQ1742_00009 rbsB; Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) K10439 rbsB; ribose transport system substrate-binding protein
D DAQ1742_03083 mglB; Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) K10540 mglB; methyl-galactoside transport system substrate-binding protein
D DAQ1742_01648 dppA; Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) K12368 dppA; dipeptide transport system substrate-binding protein
D DAQ1742_00085 dppA; Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) K12368 dppA; dipeptide transport system substrate-binding protein
D DAQ1742_01432 cheA; Signal transduction histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DAQ1742_01433 cheW; Positive regulator of CheA protein activity (CheW) K03408 cheW; purine-binding chemotaxis protein CheW
D DAQ1742_01437 cheY; Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D DAQ1742_01438 cheZ; Chemotaxis response-phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ
D DAQ1742_01436 cheB; Chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D DAQ1742_01581 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D DAQ1742_01435 cheR; Chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D DAQ1742_02901 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D DAQ1742_02907 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D DAQ1742_02908 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D DAQ1742_01430 motA; Flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA
D DAQ1742_01431 motB; Flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:daq02040]
D DAQ1742_02899 fliE; Flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D DAQ1742_02900 fliF; Flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D DAQ1742_02901 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D DAQ1742_02902 fliH; Flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D DAQ1742_02903 fliI; Flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D DAQ1742_02904 fliJ; Flagellar protein FliJ K02413 fliJ; flagellar protein FliJ
D DAQ1742_02905 fliK; Flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D DAQ1742_02906 fliL; Flagellar biosynthesis protein FliL K02415 fliL; flagellar protein FliL
D DAQ1742_02907 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D DAQ1742_02908 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D DAQ1742_02909 fliQ; Flagellar biosynthesis protein FliQ K02418 fliO; flagellar protein FliO/FliZ
D DAQ1742_02910 fliP; Flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D DAQ1742_02911 fliQ; Flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D DAQ1742_02912 fliR; Flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D DAQ1742_01440 flhA; Flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D DAQ1742_01439 flhB; Flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D DAQ1742_01443 flgA; Flagellar basal-body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D DAQ1742_01444 flgB; Flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D DAQ1742_01445 flgC; Flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D DAQ1742_01446 flgD; Flagellar basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D DAQ1742_01447 flgE; Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D DAQ1742_01448 flgF; Flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D DAQ1742_01449 flgG; Flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D DAQ1742_01450 flgH; Flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D DAQ1742_01451 flgI; Flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D DAQ1742_01452 flgJ; Flagellar protein FlgJ [peptidoglycan hydrolase] K02395 flgJ; peptidoglycan hydrolase FlgJ
D DAQ1742_01453 flgK; Flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D DAQ1742_01454 flgL; Flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D DAQ1742_02895 fliC; Flagellar biosynthesis protein FliC K02406 fliC; flagellin
D DAQ1742_02896 fliD; Flagellar hook-associated protein FliD K02407 fliD; flagellar hook-associated protein 2
D DAQ1742_02897 fliS; Flagellar biosynthesis protein FliS K02422 fliS; flagellar secretion chaperone FliS
D DAQ1742_02898 fliT; Flagellar biosynthesis protein FliT K02423 fliT; flagellar protein FliT
D DAQ1742_01430 motA; Flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA
D DAQ1742_01431 motB; Flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB
D DAQ1742_01442 flgM; Negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D DAQ1742_01441 flgN; Flagellar biosynthesis protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D DAQ1742_00339 fliY; Cystine-binding periplasmic protein precursor K02424 tcyA; L-cystine transport system substrate-binding protein
D DAQ1742_02881 fliZ; Flagellar biosynthesis protein FliZ K02425 fliZ; regulator of sigma S factor FliZ
D DAQ1742_00671 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D DAQ1742_01428 flhD; Flagellar transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D DAQ1742_01429 flhC; Flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D DAQ1742_00380 rpoN; RNA polymerase sigma-54 factor RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D DAQ1742_02882 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D DAQ1742_03548 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D DAQ1742_04000 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:daq01501]
D DAQ1742_02789 ompF_1; Outer membrane protein F precursor K09476 ompF; outer membrane pore protein F
D DAQ1742_02791 ompF_2; Outer membrane protein F precursor K09476 ompF; outer membrane pore protein F
D DAQ1742_03217 ampG; muropeptide transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D DAQ1742_02827 nagZ; Beta N-acetyl-glucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D DAQ1742_02251 oppA; Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) K15580 oppA; oligopeptide transport system substrate-binding protein
D DAQ1742_02676 mppA; Periplasmic Murein Peptide-Binding Protein MppA K15580 oppA; oligopeptide transport system substrate-binding protein
D DAQ1742_02714 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein, OppA family K15580 oppA; oligopeptide transport system substrate-binding protein
D DAQ1742_02249 oppB; Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) K15581 oppB; oligopeptide transport system permease protein
D DAQ1742_02248 oppC; Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) K15582 oppC; oligopeptide transport system permease protein
D DAQ1742_02247 oppD; Oligopeptide transport system permease protein OppD (TC 3.A.1.5.1) K15583 oppD; oligopeptide transport system ATP-binding protein
D DAQ1742_02246 oppF; Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) K10823 oppF; oligopeptide transport system ATP-binding protein
D DAQ1742_03141 acrA; Acriflavin resistance protein A; Probable RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D DAQ1742_03972 Membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D DAQ1742_03142 acrB; RND efflux system, inner membrane transporter K18138 acrB; multidrug efflux pump
D DAQ1742_01759 Signal transduction histidine kinase K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3]
D DAQ1742_01758 Two-component response regulator K18144 adeR; two-component system, OmpR family, response regulator AdeR
D DAQ1742_01757 smeY; Membrane fusion protein of RND family multidrug efflux pump K18145 adeA; membrane fusion protein, multidrug efflux system
D DAQ1742_01756 smeZ; RND efflux system, inner membrane transporter CmeB K18146 adeB; multidrug efflux pump
D DAQ1742_00417 tolC; Type I secretion outer membrane transport channel K12340 tolC; outer membrane protein
D DAQ1742_00197 Outer membrane efflux family protein K12340 tolC; outer membrane protein
D DAQ1742_04133 mrcA; Multimodular transpeptidase-transglycosylase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DAQ1742_03049 mrdA; Cell division protein ftsI [Peptidoglycan synthetase] K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D DAQ1742_03824 ftsI; Cell division protein FtsI [Peptidoglycan synthetase] K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:daq01502]
D DAQ1742_00795 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DAQ1742_03657 alr; Alanine racemase, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D DAQ1742_03822 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D DAQ1742_03821 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D DAQ1742_03818 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:daq01503]
D DAQ1742_02492 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D DAQ1742_02491 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D DAQ1742_00044 eptB; Phosphoethanolamine transferase specific for the outer Kdo residue of lipopolysaccharide K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D DAQ1742_04458 arnB; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D DAQ1742_04457 arnC; Polymyxin resistance protein ArnC, glycosyl transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D DAQ1742_04456 arnA; UDP-glucuronic acid oxidase (UDP-4-keto-hexauronic acid decarboxylating) / UDP-4-amino-4-deoxy-L-arabinose formyltransferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D DAQ1742_04455 arnD; undecaprenyl phosphate-alpha-L-Ara4FN (4-deoxy-4-formamido-L-arabinose) deformylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D DAQ1742_04454 arnT; Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D DAQ1742_04453 pmrL; Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D DAQ1742_04452 pmrM; Polymyxin resistance protein PmrM K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF
D DAQ1742_04065 pmrB; Sensor protein basS/pmrB K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D DAQ1742_04064 pmrA; Transcriptional regulatory protein basR/pmrA K07771 basR; two-component system, OmpR family, response regulator BasR
D DAQ1742_04063 pmrC; phosphethanolamine transferase, LPS decoration K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D DAQ1742_02694 sapA; Peptide transport periplasmic protein sapA (TC 3.A.1.5.5) K19226 sapA; cationic peptide transport system substrate-binding protein
D DAQ1742_02695 sapB; Peptide transport system permease protein SapB K19227 sapB; cationic peptide transport system permease protein
D DAQ1742_02696 sapC; Peptide transport system permease protein sapC (TC 3.A.1.5.5) K19228 sapC; cationic peptide transport system permease protein
D DAQ1742_02697 sapD; Peptide transport system ATP-binding protein SapD (TC 3.A.1.5.5) K19229 sapD; cationic peptide transport system ATP-binding protein
D DAQ1742_02698 sapF; Peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein
D DAQ1742_02178 prtA; Secreted alkaline metalloproteinase, PrtA/B/C/G homolog K01406 prtC; serralysin [EC:3.4.24.40]
D DAQ1742_02170 prtG; Secreted alkaline metalloproteinase K01406 prtC; serralysin [EC:3.4.24.40]
D DAQ1742_02176 prtB; Secreted alkaline metalloproteinase K01406 prtC; serralysin [EC:3.4.24.40]
D DAQ1742_02177 prtC; Secreted alkaline metalloproteinase K01406 prtC; serralysin [EC:3.4.24.40]
D DAQ1742_03303 Copper homeostasis protein CutF precursor / Lipoprotein NlpE involeved in surface adhesion K06079 cutF; copper homeostasis protein (lipoprotein)
D DAQ1742_00151 cpxA; Copper sensory histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D DAQ1742_00152 cpxR; Copper-sensing two-component system response regulator CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D DAQ1742_03947 amiB; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DAQ1742_03350 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DAQ1742_02758 ldtC; L,D-transpeptidase linking Lpp to murein, periplasmic K19236 ycfS; L,D-transpeptidase YcfS
D DAQ1742_01023 degP; serine endoprotease (protease Do), membrane-associated K04771 degP; serine protease Do [EC:3.4.21.107]
D DAQ1742_00020 dsbA; Periplasmic thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D DAQ1742_04118 ppiA; Peptidyl-prolyl cis-trans isomerase PpiA precursor K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D DAQ1742_03141 acrA; Acriflavin resistance protein A; Probable RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D DAQ1742_03972 Membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D DAQ1742_03142 acrB; RND efflux system, inner membrane transporter K18138 acrB; multidrug efflux pump
D DAQ1742_00417 tolC; Type I secretion outer membrane transport channel K12340 tolC; outer membrane protein
D DAQ1742_00197 Outer membrane efflux family protein K12340 tolC; outer membrane protein
D DAQ1742_03313 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D DAQ1742_03281 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_04320 vfmO; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_04321 vfmP; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_03282 dltB; D-alanyl transfer protein DltB K03739 dltB; membrane protein involved in D-alanine export
D DAQ1742_03280 dltC; D-alanine carrier protein DltC K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D DAQ1742_03284 dltD; Poly(glycerophosphate chain) D-alanine transfer protein DltD K03740 dltD; D-alanine transfer protein
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:daq01000]
C 01001 Protein kinases [BR:daq01001]
D DAQ1742_03483 FIG00696908: hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D DAQ1742_03252 phoR; Phosphate regulon sensor protein PhoR (SphS) K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D DAQ1742_02492 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D DAQ1742_04141 envZ; Osmolarity sensory histidine kinase EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D DAQ1742_02595 rstB; Sensory histidine kinase in two-component regulatory system with RstA K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D DAQ1742_00151 cpxA; Copper sensory histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D DAQ1742_01129 baeS; Sensory histidine kinase BaeS K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D DAQ1742_04065 pmrB; Sensor protein basS/pmrB K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D DAQ1742_03002 kdpD; Osmosensitive K+ channel histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D DAQ1742_00406 arcB; Aerobic respiration control sensor protein arcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D DAQ1742_01759 Signal transduction histidine kinase K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3]
D DAQ1742_00864 Putative two-component system sensor kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D DAQ1742_02528 narX; Nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D DAQ1742_00623 uhpB; Sensor histidine protein kinase UhpB, glucose-6-phosphate specific K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D DAQ1742_03109 rcsD; Two-component sensor protein RcsD K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D DAQ1742_03111 rcsC; Two-component sensor protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D DAQ1742_03553 gacS; BarA sensory histidine kinase (= VarS = GacS) K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D DAQ1742_02096 citA; Sensor kinase CitA K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D DAQ1742_00081 dcuS; Fumarate respiration sensor kinase protein DcuS K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3]
D DAQ1742_01975 ypdA; putative sensor protein, responsive to pyruvate K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D DAQ1742_04162 yehU; predicted sensory kinase in two-component system with YehT, Stationary phase sensor kinase regulating yjiY, The YpdAB and YehTU two-component regulators are paralogous K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D DAQ1742_00927 yehU; predicted sensory kinase in two-component system with YehT, Stationary phase sensor kinase regulating yjiY, The YpdAB and YehTU two-component regulators are paralogous K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D DAQ1742_00028 glnL; Nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D DAQ1742_01070 qseE; Putative sensor-like histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D DAQ1742_01432 cheA; Signal transduction histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:daq01009]
D DAQ1742_00166 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D DAQ1742_03130 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D DAQ1742_00558 serB; Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:daq01002]
D DAQ1742_03876 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D DAQ1742_01251 outO; Leader peptidase (Prepilin peptidase) / N-methyltransferase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D DAQ1742_01374 hybD; Hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D DAQ1742_01484 hycI; Coenzyme F420 hydrogenase maturation protease K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51]
D DAQ1742_01117 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D DAQ1742_01385 GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D DAQ1742_01989 mepS; predicted peptidase, outer membrane lipoprotein, Murein DD-endopeptidase, space-maker hydrolase K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D DAQ1742_02731 mepH; Murein DD-endopeptidase, space-maker hydrolase K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D DAQ1742_02801 nlpC; Probable lipoprotein nlpC precursor K13695 nlpC; probable lipoprotein NlpC
D DAQ1742_01331 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D DAQ1742_00404 gltB; Glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D DAQ1742_04474 glmS; Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DAQ1742_03020 asnB; Asparagine synthetase [glutamine-hydrolyzing] K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D DAQ1742_00824 asnO; Asparagine synthetase [glutamine-hydrolyzing] K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D DAQ1742_03226 yajL; Covalent chaperone for sulfenylated thiol proteins; confers resistance to oxidative stress K03152 thiJ; protein deglycase [EC:3.5.1.124]
D DAQ1742_00786 ldtB; L,D-transpeptidase YbiS K19235 ybiS; L,D-transpeptidase YbiS
D DAQ1742_02758 ldtC; L,D-transpeptidase linking Lpp to murein, periplasmic K19236 ycfS; L,D-transpeptidase YcfS
D DAQ1742_02797 ycbB; Murein L,D-transpeptidase, periplasmic K21470 ycbB; L,D-transpeptidase YcbB
D DAQ1742_02785 pepN; Membrane alanine aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D DAQ1742_04430 prlC; Oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D DAQ1742_02178 prtA; Secreted alkaline metalloproteinase, PrtA/B/C/G homolog K01406 prtC; serralysin [EC:3.4.24.40]
D DAQ1742_02170 prtG; Secreted alkaline metalloproteinase K01406 prtC; serralysin [EC:3.4.24.40]
D DAQ1742_02176 prtB; Secreted alkaline metalloproteinase K01406 prtC; serralysin [EC:3.4.24.40]
D DAQ1742_02177 prtC; Secreted alkaline metalloproteinase K01406 prtC; serralysin [EC:3.4.24.40]
D DAQ1742_03353 ptr; Protease III precursor K01407 ptrA; protease III [EC:3.4.24.55]
D DAQ1742_00100 yhjJ; Protein YhjJ, putative peptidase K07263 pqqL; zinc protease [EC:3.4.24.-]
D DAQ1742_00852 Probable zinc protease pqqL K07263 pqqL; zinc protease [EC:3.4.24.-]
D DAQ1742_00495 pepA; Cytosol aminopeptidase PepA K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D DAQ1742_01099 pepB; Peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D DAQ1742_00184 Microsomal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D DAQ1742_03062 dapE; N-succinyl-L,L-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D DAQ1742_01647 Tripeptide aminopeptidase K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D DAQ1742_02494 pepT; Tripeptide aminopeptidase K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D DAQ1742_03458 pepD; Aminoacyl-histidine dipeptidase (Peptidase D) K01270 pepD; dipeptidase D [EC:3.4.13.-]
D DAQ1742_03471 allC; N-carbamoyl-L-amino acid hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D DAQ1742_02300 mepM; predicted peptidase, Murein DD-endopeptidase, space-maker hydrolase, family M23/M37 K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D DAQ1742_03327 map; Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D DAQ1742_00268 pepQ; Xaa-Pro dipeptidase PepQ K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D DAQ1742_00552 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D DAQ1742_00689 ftsH; subunit of integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D DAQ1742_02482 htpX; Zinc metalloprotease HtpX, membrane-bound; cleaves SecY in vivo K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D DAQ1742_03073 bepA; chaperone/protease involved in the maintenance of OM integrity;Periplasmic predicted metalloprotease, required for LoiP localization (Lutticke, 2012) K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D DAQ1742_03318 rseP; inner membrane zinc RIP metalloprotease, regulator of sigma E K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D DAQ1742_03970 Peptidase M50 K16922 yydH; putative peptide zinc metalloprotease protein
D DAQ1742_00200 D-aminopeptidase dipeptide-binding protein DppA K16203 dppA1; D-amino peptidase [EC:3.4.11.-]
D DAQ1742_01308 mepA; Murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D DAQ1742_02744 mtfA; DgsA-Mlc anti-repressor; binds Mlc and blocks its repression of ptsG K09933 mtfA; MtfA peptidase
D DAQ1742_00201 dmpA; L-aminopeptidase;probably in the operon with GsiABCD involved in glutathione transport K01266 dmpA; D-aminopeptidase [EC:3.4.11.19]
D DAQ1742_02598 ydgD; FIG00634494: possible peptidase K04775 ydgD; protease YdgD [EC:3.4.21.-]
D DAQ1742_01023 degP; serine endoprotease (protease Do), membrane-associated K04771 degP; serine protease Do [EC:3.4.21.107]
D DAQ1742_00396 degQ; Outer membrane stress sensor protease DegQ, serine protease, periplasmic K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D DAQ1742_00395 degS; Outer membrane stress sensor protease DegS. serine endoprotease, periplasmic K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D DAQ1742_02291 ptrB; Protease II K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D DAQ1742_03052 dacA; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D DAQ1742_02029 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D DAQ1742_01656 dltD; Murein-DD-endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D DAQ1742_00684 dacB; D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D DAQ1742_03213 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D DAQ1742_03211 lon; ATP-dependent protease La Type I K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D DAQ1742_02870 ycbZ; Putative protease La homolog K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D DAQ1742_00600 lexA; SOS-response repressor and protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D DAQ1742_01051 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D DAQ1742_02532 pcr; Tail-specific protease precursor K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D DAQ1742_02681 Penicillin acylase II K01434 pac; penicillin G amidase [EC:3.5.1.11]
D DAQ1742_02270 sppA; Signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
D DAQ1742_02221 sohB; Possible protease sohB K04774 sohB; serine protease SohB [EC:3.4.21.-]
D DAQ1742_04154 glpG; GlpG protein (membrane protein of glp regulon) K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D DAQ1742_01412 mccF; Muramoyltetrapeptide carboxypeptidase, microcin immunity protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D DAQ1742_04296 hslV; ATP-dependent protease HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D DAQ1742_00199 iaaA; Glutathione utilization, isoAsp aminopeptidase, cleaves isoAsp-X dipeptides; Ntn hydrolase; weak L-asparaginase activity in vitro K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D DAQ1742_01414 ggt; Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D DAQ1742_03478 Gamma-glutamyltranspeptidase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126]
D DAQ1742_01126 yegQ; Putative protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D DAQ1742_00706 yhbV; FIG139928: Putative protease K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D DAQ1742_00707 yhbU; FIG139552: Putative protease K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D DAQ1742_00373 tldE; predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17;TldD and/or TldE act as a protease [Allali02] that is involved in sensitivity to DNA gyrase inhibitor LetD/CcdB (encoded by the F plasmid) K03592 pmbA; PmbA protein
D DAQ1742_00361 tldD; TldD protein, part of TldE/TldD proteolytic complex K03568 tldD; TldD protein
D DAQ1742_03941 hflC; modulator for HflB protease specific for phage lambda cII repressor K04087 hflC; modulator of FtsH protease HflC
D DAQ1742_03942 hflK; modulator for HflB protease specific for phage lambda cII repressor K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:daq01003]
D DAQ1742_04158 glgA; Glycogen synthase, ADP-glucose transglucosylase K00703 glgA; starch synthase [EC:2.4.1.21]
D DAQ1742_00093 bcsA; Cellulose synthase catalytic subunit [UDP-forming] K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D DAQ1742_00408 mtgA; Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D DAQ1742_01016 mrcB; Multimodular transpeptidase-transglycosylase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D DAQ1742_04133 mrcA; Multimodular transpeptidase-transglycosylase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DAQ1742_02027 phaG; (R)-3-hydroxydecanoyl-ACP:CoA transacylase K18100 rhlA; rhamnosyltransferase subunit A [EC:2.4.1.-]
D DAQ1742_01415 RhlB, TDP-rhamnosyltransferase 1 K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-]
D DAQ1742_04236 rffM; Probable UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D DAQ1742_04238 rffT; 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D DAQ1742_04245 rfe; Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D DAQ1742_02860 opgH; Glucans biosynthesis glucosyltransferase H K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D DAQ1742_01775 Cyclic beta-1,2-glucan synthase K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:daq01005]
D DAQ1742_03313 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D DAQ1742_03312 lpxB; Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D DAQ1742_03812 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D DAQ1742_03315 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D DAQ1742_01164 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D DAQ1742_02114 lpxK; Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D DAQ1742_02859 lpxL; Lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D DAQ1742_02299 lpxM; Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D DAQ1742_00767 lpxP; Lipid A biosynthesis lauroyl acyltransferase K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D DAQ1742_00222 kdtA; Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase [often with also] K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D DAQ1742_04454 arnT; Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D DAQ1742_04063 pmrC; phosphethanolamine transferase, LPS decoration K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D DAQ1742_00044 eptB; Phosphoethanolamine transferase specific for the outer Kdo residue of lipopolysaccharide K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D DAQ1742_02145 kdsA; 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D DAQ1742_02116 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D DAQ1742_00384 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D DAQ1742_00385 kdsD; Arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D DAQ1742_00230 rfaC; ADP-heptose:LPS heptosyl transferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D DAQ1742_00221 kdtX; Lipopolysaccharide core biosynthesis glycosyl transferase kdtX K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D DAQ1742_00231 rfaF; ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D DAQ1742_00224 waaG; UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D DAQ1742_00225 waaQ; Lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D DAQ1742_03463 lpcA; Phosphoheptose isomerase 1 K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D DAQ1742_03515 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D DAQ1742_03570 rfaE; ADP-heptose synthase / D-glycero-beta-D-manno-heptose 7-phosphate kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D DAQ1742_00232 rfaD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D DAQ1742_04237 wzyE; Putative ECA polymerase K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27]
D DAQ1742_04245 rfe; Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D DAQ1742_00766 Lipid carrier : UDP-N-acetylgalactosaminyltransferase K13012 wbqP; O-antigen biosynthesis protein WbqP
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:daq01011]
D DAQ1742_00394 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D DAQ1742_00277 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D DAQ1742_03817 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D DAQ1742_03820 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D DAQ1742_03823 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D DAQ1742_00795 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DAQ1742_03657 alr; Alanine racemase, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D DAQ1742_04279 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D DAQ1742_01412 mccF; Muramoyltetrapeptide carboxypeptidase, microcin immunity protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D DAQ1742_03821 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D DAQ1742_03818 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D DAQ1742_03576 bacA; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D DAQ1742_02321 murJ; Probable peptidoglycan lipid II flippase;predicted inner membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D DAQ1742_04133 mrcA; Multimodular transpeptidase-transglycosylase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DAQ1742_01016 mrcB; Multimodular transpeptidase-transglycosylase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D DAQ1742_03049 mrdA; Cell division protein ftsI [Peptidoglycan synthetase] K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D DAQ1742_03824 ftsI; Cell division protein FtsI [Peptidoglycan synthetase] K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D DAQ1742_03052 dacA; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D DAQ1742_02029 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D DAQ1742_00684 dacB; D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D DAQ1742_01656 dltD; Murein-DD-endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D DAQ1742_00408 mtgA; Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D DAQ1742_00786 ldtB; L,D-transpeptidase YbiS K19235 ybiS; L,D-transpeptidase YbiS
D DAQ1742_02758 ldtC; L,D-transpeptidase linking Lpp to murein, periplasmic K19236 ycfS; L,D-transpeptidase YcfS
D DAQ1742_02797 ycbB; Murein L,D-transpeptidase, periplasmic K21470 ycbB; L,D-transpeptidase YcbB
D DAQ1742_01308 mepA; Murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D DAQ1742_02731 mepH; Murein DD-endopeptidase, space-maker hydrolase K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D DAQ1742_01989 mepS; predicted peptidase, outer membrane lipoprotein, Murein DD-endopeptidase, space-maker hydrolase K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D DAQ1742_02300 mepM; predicted peptidase, Murein DD-endopeptidase, space-maker hydrolase, family M23/M37 K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D DAQ1742_03908 slt; Soluble lytic murein transglycosylase precursor K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D DAQ1742_03346 mltA; Membrane-bound lytic murein transglycosylase A precursor K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D DAQ1742_00811 mltB; Membrane-bound lytic murein transglycosylase B precursor K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D DAQ1742_03370 mltC; Membrane-bound lytic murein transglycosylase C precursor K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D DAQ1742_00986 mltD; Membrane-bound lytic murein transglycosylase D precursor K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D DAQ1742_01066 mltF; Membrane-bound lytic transglycosylase F, murein hydrolase K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D DAQ1742_02837 yceG; Septation protein, ampicillin sensitivity K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D DAQ1742_03051 rlpA; minor lipoprotein, septal ring protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D DAQ1742_03947 amiB; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DAQ1742_03350 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DAQ1742_02051 amiD; 1,6-anhydro-N-acetylmuramyl-L-alanine amidase. AmiD also cleaves N-acetylmuramyl-L-alanine bonds in murein and muropeptides (Uehara, 2007) K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DAQ1742_03797 ampD; N-acetylmuramoyl-L-alanine amidase AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
D DAQ1742_02757 lpp; murein lipoprotein K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:daq01004]
D DAQ1742_02843 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D DAQ1742_04326 vfmT; 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DAQ1742_04329 vfmW; 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DAQ1742_02844 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DAQ1742_01319 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase, KASI K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D DAQ1742_01784 3-oxoacyl-[acyl-carrier-protein] synthase, KASII K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DAQ1742_02840 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase, KASII K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DAQ1742_03403 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II, putative K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D DAQ1742_02889 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02890 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_01804 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_01806 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02421 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02842 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DAQ1742_02871 fabA; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D DAQ1742_03314 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D DAQ1742_02699 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DAQ1742_03095 tesA; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D DAQ1742_03147 tesB; Acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D DAQ1742_02238 yciA; Acyl-CoA thioesterase YciA, involved in membrane biogenesis K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D DAQ1742_00774 acs; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D DAQ1742_03833 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_02437 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_04390 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_04403 O-succinylbenzoic acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_02886 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_00598 plsB; Glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D DAQ1742_02845 plsX; Phosphate:acyl-ACP acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D DAQ1742_03579 plsY; Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D DAQ1742_00428 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:daq01008]
D DAQ1742_01262 ybdZ; MbtH-like protein K05375 mbtH; MbtH protein
D DAQ1742_01257 cbsB; Isochorismatase [enterobactin] siderophore / Apo-aryl carrier domain of EntB K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D DAQ1742_00564 4'-phosphopantetheinyl transferase [enterobactin] siderophore K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D DAQ1742_01258 cbsE; 2,3-dihydroxybenzoate-AMP ligase [enterobactin] siderophore K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D DAQ1742_01263 cbsF; Chrysobactin synthetase component F, serine activating enzyme K24101 vabF; L-arginine---[L-arginyl-carrier protein] ligase [EC:6.2.1.63]
D DAQ1742_01469 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:daq01006]
D DAQ1742_03229 ispA; Octaprenyl-diphosphate synthase / Dimethylallyltransferase / Geranyltranstransferase (farnesyldiphosphate synthase) / Geranylgeranyl pyrophosphate synthetase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D DAQ1742_00679 ispB; Octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D DAQ1742_03320 ispU; Undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D DAQ1742_03945 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D DAQ1742_04298 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D DAQ1742_00597 ubiA; 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D DAQ1742_03222 cyoE; Heme O synthase, protoheme IX farnesyltransferase COX10-CtaB K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:daq01007]
D DAQ1742_01035 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DAQ1742_03014 glnS; Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D DAQ1742_01010 gluQ; glutamyl-Q-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D DAQ1742_02718 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DAQ1742_04121 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D DAQ1742_01167 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DAQ1742_02319 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DAQ1742_02936 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DAQ1742_00822 metG; Methionyl-tRNA synthetase-related protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DAQ1742_03877 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DAQ1742_00493 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DAQ1742_03043 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DAQ1742_00750 lysS; Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D DAQ1742_02311 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DAQ1742_02788 asnS; Asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D DAQ1742_01109 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DAQ1742_04370 glyQ; Glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D DAQ1742_04369 glyS; Glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D DAQ1742_02070 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DAQ1742_03521 proS; Prolyl-tRNA synthetase, bacterial type K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D DAQ1742_02478 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DAQ1742_00951 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DAQ1742_02474 pheS; Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DAQ1742_03583 Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DAQ1742_02473 pheT; Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DAQ1742_02792 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DAQ1742_04380 avtA; Valine--pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D DAQ1742_01351 alaA; Aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D DAQ1742_01235 alaC; Valine--pyruvate aminotransferase 3; glutamic-pyruvic transaminase (GPT), L alanine biosynthesis K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D DAQ1742_03661 tyrB; Biosynthetic Aromatic amino acid aminotransferase alpha K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D DAQ1742_03470 ybdL; Methionine aminotransferase, PLP-dependent K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D DAQ1742_01408 Aspartate aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D DAQ1742_03585 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DAQ1742_02091 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DAQ1742_00233 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D DAQ1742_03418 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D DAQ1742_01613 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D DAQ1742_04093 argD; Acetylornithine aminotransferase / N-succinyl-L,L-diaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D DAQ1742_02510 goaG; Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D DAQ1742_01508 acsF; Achromobactin biosynthesis protein AcsF; Diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D DAQ1742_01506 patA; Putrescine aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82]
D DAQ1742_01611 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D DAQ1742_01017 hemL; Glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D DAQ1742_01746 D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DAQ1742_01234 dat; D-alanine aminotransferase. Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha-keto acid in the first half-reaction. The second-half reaction is the reverse of the first, transferring the amino group from the pyridoxamine to a second alpha-keto acid to form the product D-amino acid via a ping-pong mechanism. This is an important process in the formation of D-alanine and D-glutamate, which are essential bacterial cell wall components K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D DAQ1742_02416 Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DAQ1742_04265 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DAQ1742_02081 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DAQ1742_03472 pucG; Serine--pyruvate aminotransferase / L-alanine:glyoxylate aminotransferase K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D DAQ1742_04458 arnB; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D DAQ1742_04240 rffA; dTDP-4-keto-6-deoxy-D-glucose aminotransferase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:daq00194]
D DAQ1742_04478 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D DAQ1742_04479 atpD; ATP synthase beta chain K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D DAQ1742_04480 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D DAQ1742_04481 atpA; ATP synthase alpha chain K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D DAQ1742_04482 atpH; ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D DAQ1742_04483 atpF; ATP synthase F0 sector subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D DAQ1742_04484 atpE; ATP synthase F0 sector subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D DAQ1742_04485 atpB; ATP synthase F0 sector subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D DAQ1742_04486 atpI; ATP synthase protein I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:daq03000]
D DAQ1742_01909 macromolecule metabolism; macromolecule synthesis, modification; dna-replication, repair, restr./modif. K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DAQ1742_02641 Modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DAQ1742_02197 araC; Arabinose operon regulatory protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D DAQ1742_00544 rhaR; L-rhamnose operon transcriptional activator RhaR K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D DAQ1742_00543 rhaS; L-rhamnose operon regulatory protein RhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D DAQ1742_00933 eutR; Ethanolamine operon regulatory protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D DAQ1742_01585 Right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D DAQ1742_03904 rob; DNA-binding transcriptional activator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D DAQ1742_01646 Transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D DAQ1742_03339 gcvA; Glycine cleavage system transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DAQ1742_01411 Transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DAQ1742_04260 ilvY; HTH-type transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D DAQ1742_04490 metR; DNA-binding transcriptional activator, homocysteine-binding K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D DAQ1742_03882 nhaR; Transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D DAQ1742_04285 oxyR; Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D DAQ1742_03916 argP; Chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D DAQ1742_02215 cysB; Cys regulon transcriptional activator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D DAQ1742_01499 cbl; Transcriptional activator for ssuEADCB and tauABCD;The function of Cbl is required in Escherichia coli for expression of sulphate starvation-inducible (ssi) genes, associated with the biosynthesis of cysteine from organic sulphur sources (sulphonates). K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D DAQ1742_00895 dmlR; Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme, LysR family K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D DAQ1742_01470 yjiE; transcriptional regulator LysR-type, Hypochlorite-responsive transcription factor. YjiE is a global regulator responding to HOCl exposure that replenishes methionine and cysteine pools and down-regulates genes involved in iron acquisition (Gebendorfer, 2012) K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D DAQ1742_00362 aaeR; LysR family transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D DAQ1742_04270 hdfR; HTH-type transcriptional regulator hdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D DAQ1742_02030 deoR; Deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D DAQ1742_04153 glpR; Glycerol-3-phosphate regulon repressor, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D DAQ1742_00321 agaR; Transcriptional repressor of aga operon K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D DAQ1742_01658 Transcriptional regulators of sugar metabolism K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D DAQ1742_04092 ulaR; Ascorbate utilization transcriptional regulator UlaR, HTH-type K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D DAQ1742_01468 lacI; Transcriptional repressor of the lac operon K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D DAQ1742_01194 ganR; transcriptional activator of the gan regulon K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D DAQ1742_00011 rbsR; Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DAQ1742_01542 rafR; Raffinose operon transcriptional regulatory protein rafR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DAQ1742_03631 galR; Galactose operon repressor, GalR-LacI family of transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DAQ1742_03081 galS; Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DAQ1742_04294 cytR; CytR and CRP cooperate to regulate genes involved in nucleoside utiization K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D DAQ1742_03830 fruR; Fructose repressor FruR, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D DAQ1742_00438 scrR; Sucrose operon repressor ScrR, LacI family K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D DAQ1742_02733 purR; Purine nucleotide synthesis repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D DAQ1742_04173 gntR; Gluconate utilization system Gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D DAQ1742_01176 hutC; Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D DAQ1742_02502 fadR; Transcriptional regulator for fatty acid degradation FadR, GntR family K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D DAQ1742_03792 pdhR; Transcriptional repressor for pyruvate dehydrogenase complex K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DAQ1742_03633 uxuR; Hexuronate utilization operon transcriptional repressor UxuR K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D DAQ1742_00610 exuR; Hexuronate utilization operon transcriptional repressor ExuR K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D DAQ1742_02511 Transcriptional regulator GabR of GABA utilization (GntR family with aminotransferase-like domain) K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D DAQ1742_04413 Transcriptional regulator, GntR family domain / Aspartate aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D DAQ1742_03140 acrR; Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D DAQ1742_00212 slmA; Transcriptional regulator SlmA, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D DAQ1742_04394 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) K09017 rutR; TetR/AcrR family transcriptional regulator
D DAQ1742_01777 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D DAQ1742_00631 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D DAQ1742_04283 fabR; Unsaturated fatty acid biosythesis repressor FabR, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D DAQ1742_00002 asnC; Regulatory protein AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D DAQ1742_02066 lrp; Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DAQ1742_04418 transcriptional regulator, AsnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DAQ1742_03152 ybaO; Putative HTH-type transcriptional regulator ybaO K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D DAQ1742_04314 expR; N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D DAQ1742_01582 marR; Multiple antibiotic resistance protein MarR K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR
D DAQ1742_02723 slyA; Transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D DAQ1742_00785 mfbR; transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D DAQ1742_03497 mprA; Transcription repressor of tripartite multidrug resistance system K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D DAQ1742_04416 Transcriptional regulator, MarR family K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D DAQ1742_03964 ohrR; Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D DAQ1742_03119 cueR; copper responsive transcription regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D DAQ1742_03013 fur; Ferric uptake regulation protein FUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D DAQ1742_00602 zur; Zinc uptake regulation protein ZUR K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D DAQ1742_04002 iclR; Acetate operon repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D DAQ1742_02480 kdgR; Transcriptional regulator KdgR, KDG operon repressor K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D DAQ1742_03918 pir; Transcriptional regulator, IclR family K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
D DAQ1742_00537 tir; Transcriptional regulator, IclR family K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
D DAQ1742_04083 crp; Cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DAQ1742_02150 fnr; DNA-binding transcriptional dual regulator, global regulator of anaerobic growth K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D DAQ1742_01090 iscR; Iron-sulfur cluster regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D DAQ1742_03614 nsrR; Nitrite-sensitive transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D DAQ1742_02296 hexR; Phosphogluconate repressor HexR, RpiR family, predicted DNA-binding transcriptional regulator. P. aeruginosa homolog represses zwf transcription K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D DAQ1742_00278 birA; bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/DNA-binding transcriptional repressor, bio-5'-AMP-binding K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D DAQ1742_00342 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DAQ1742_03907 trpR; Transcriptional repressor protein TrpR K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D DAQ1742_03726 hypothetical protein K07724 ner; Ner family transcriptional regulator
D DAQ1742_03158 hypothetical protein K07724 ner; Ner family transcriptional regulator
D DAQ1742_00856 Ner-like regulatory protein K07724 ner; Ner family transcriptional regulator
D DAQ1742_04491 sfsB; DNA-binding transcriptional activator of maltose metabolism K07724 ner; Ner family transcriptional regulator
D DAQ1742_03844 sgrR; SgrR, sugar-phosphate stress, transcriptional activator of SgrS small RNA K11925 sgrR; SgrR family transcriptional regulator
D DAQ1742_00556 nadR; NadR transcriptional regulator / Nicotinamide-nucleotide adenylyltransferase, NadR family / Ribosylnicotinamide kinase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D DAQ1742_01474 fhlA; Formate hydrogenlyase transcriptional activator K15836 fhlA; formate hydrogenlyase transcriptional activator
D DAQ1742_01024 cdaR; regulatory protein for D-galactarate, D-glucarate, and D-glycerate metabolism K02647 cdaR; carbohydrate diacid regulator
D DAQ1742_02946 modE; DNA-binding domain of ModE / Molybdate-binding domain of ModE K02019 modE; molybdate transport system regulatory protein
D DAQ1742_04100 Putative DNA-binding protein in cluster with Type I restriction-modification system K07726 K07726; putative transcriptional regulator
D DAQ1742_00781 yozG; Transcriptional regulator, Cro/CI family K07727 K07727; putative transcriptional regulator
D DAQ1742_04168 nikR; Nickel responsive regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D DAQ1742_04291 metJ; DNA-binding transcriptional repressor, S-adenosylmethionine-binding K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D DAQ1742_04257 putA; Proline dehydrogenase (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase/PutA represses transcription of the put regulon K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D DAQ1742_02754 bglG; Beta-glucoside bgl operon antiterminator, BglG family K03488 licT; beta-glucoside operon transcriptional antiterminator
D DAQ1742_04443 Beta-glucoside bgl operon antiterminator, BglG family K03488 licT; beta-glucoside operon transcriptional antiterminator
D DAQ1742_03215 bloA; regulator of penicillin binding proteins and beta lactamase transcription (morphogene) K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D DAQ1742_00262 rfaH; transcription antiterminator protein K05785 rfaH; transcriptional antiterminator RfaH
D DAQ1742_00675 argR; Arginine pathway regulatory protein ArgR, repressor of arg regulon K03402 argR; transcriptional regulator of arginine metabolism
D DAQ1742_03019 nagC; N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family K02565 nagC; N-acetylglucosamine repressor
D DAQ1742_02187 mlc; Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon K15545 mlc; transcriptional regulator of PTS gene
D DAQ1742_02684 tyrR; Transcriptional repressor protein TyrR, tyrosine-binding K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D DAQ1742_03071 gcvR; Glycine cleavage system transcriptional antiactivator GcvR K03567 gcvR; glycine cleavage system transcriptional repressor
D DAQ1742_02692 pspF; Psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D DAQ1742_02689 pspC; Phage shock protein C, regulatory K03973 pspC; phage shock protein C
D DAQ1742_00374 rnk; Regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D DAQ1742_01967 alpA; Phage transcriptional regulator K07733 alpA; prophage regulatory protein
D DAQ1742_03446 Transcriptional regulator, AlpA like K07733 alpA; prophage regulatory protein
D DAQ1742_01293 Transcriptional regulator, AlpA like K07733 alpA; prophage regulatory protein
D DAQ1742_00509 FIG00644614: hypothetical protein K07733 alpA; prophage regulatory protein
D DAQ1742_00648 hypothetical protein K07733 alpA; prophage regulatory protein
D DAQ1742_03935 yqqE; homologous to P. aeruginosa AlgH regulatory protein K07735 algH; putative transcriptional regulator
D DAQ1742_01011 dksA; RNAP-binding protein modulating ppGpp and iNTP regulation K06204 dksA; RNA polymerase-binding transcription factor
D DAQ1742_03235 ndrR; Ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D DAQ1742_03452 crl; transcriptional regulator interacting with RNA polymerase, stabilise rpoS-RNA pol interaction K11926 crl; sigma factor-binding protein Crl
D DAQ1742_03827 mraZ; Cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:daq03021]
D DAQ1742_04028 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D DAQ1742_00291 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D DAQ1742_00292 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D DAQ1742_00041 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D DAQ1742_00671 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D DAQ1742_03524 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D DAQ1742_01045 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D DAQ1742_00723 fecI; RNA polymerase sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D DAQ1742_00116 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D DAQ1742_00380 rpoN; RNA polymerase sigma-54 factor RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D DAQ1742_02882 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D DAQ1742_03854 rapA; RNA polymerase associated protein RapA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D DAQ1742_00696 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
D DAQ1742_03232 nusB; Transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D DAQ1742_00286 nusG; Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D DAQ1742_00401 sspA; Stringent starvation protein A K03599 sspA; stringent starvation protein A
D DAQ1742_00402 sspB; ClpXP protease specificity-enhancing factor / Stringent starvation protein B K03600 sspB; stringent starvation protein B
D DAQ1742_01046 rseA; Sigma factor RpoE negative regulatory protein RseA K03597 rseA; sigma-E factor negative regulatory protein RseA
D DAQ1742_01047 rseB; Sigma factor RpoE negative regulatory protein RseB precursor K03598 rseB; sigma-E factor negative regulatory protein RseB
D DAQ1742_01048 rseC; Sigma factor RpoE regulatory protein RseC K03803 rseC; sigma-E factor negative regulatory protein RseC
D DAQ1742_01011 dksA; RNAP-binding protein modulating ppGpp and iNTP regulation K06204 dksA; RNA polymerase-binding transcription factor
D DAQ1742_00685 greA; Transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D DAQ1742_04143 greB; Transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D DAQ1742_04247 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D DAQ1742_03306 rof; modulator of Rho-dependent transcription termination K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:daq03019]
D DAQ1742_02850 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D DAQ1742_00359 rng; ribonuclease G involved in 16S rRNA processing K08301 rng; ribonuclease G [EC:3.1.26.-]
D DAQ1742_01052 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D DAQ1742_03613 rnr; 3'-to-5' exoribonuclease RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D DAQ1742_03975 orn; 3'-to-5' oligoribonuclease (orn) K13288 orn; oligoribonuclease [EC:3.1.-.-]
D DAQ1742_04249 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D DAQ1742_01644 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D DAQ1742_00704 deaD; ATP-dependent RNA helicase, 50S ribosomal subunit biogenesis; translation factor W2; facilitates translation of mRNAs with 5' secondary structures K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D DAQ1742_04191 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D DAQ1742_03548 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DAQ1742_00702 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D DAQ1742_04247 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D DAQ1742_00166 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D DAQ1742_03886 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D DAQ1742_00595 groL; Heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DAQ1742_03944 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D DAQ1742_01154 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D DAQ1742_01009 pcnB; Poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D DAQ1742_03361 nudH; Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D DAQ1742_00952 csrA; Carbon storage regulator K03563 csrA; carbon storage regulator
D DAQ1742_00354 csrD; Targeting factor for rsmB/csrBC sRNA degradation by RNase E; carbon flux regulator; indirectly affects CsrA/RsmA function K18765 csrD; RNase E specificity factor CsrD
D DAQ1742_04299 rraA; Ribonuclease E inhibitor RraA K02553 rraA; regulator of ribonuclease activity A
D DAQ1742_00488 rraB; Ribonuclease E inhibitor RraB K09893 rraB; regulator of ribonuclease activity B
D DAQ1742_00377 rapZ; Adaptor protein RapZ for GlmZ/GlmY sRNA degradation; glucosamine-6-phosphate regulated; NTPase K06958 rapZ; RNase adapter protein RapZ
D DAQ1742_02599 moc; ATP-dependent RNA helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D DAQ1742_01015 ATP-dependent helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:daq03011]
D DAQ1742_02084 rpsA; SSU ribosomal protein S1p K02945 RP-S1; small subunit ribosomal protein S1
D DAQ1742_03325 rpsB; SSU ribosomal protein S2p (SAe) K02967 RP-S2; small subunit ribosomal protein S2
D DAQ1742_04045 rpsC; SSU ribosomal protein S3p (S3e) K02982 RP-S3; small subunit ribosomal protein S3
D DAQ1742_04029 rpsD; SSU ribosomal protein S4p (S9e) K02986 RP-S4; small subunit ribosomal protein S4
D DAQ1742_04035 rpsE; SSU ribosomal protein S5p (S2e) K02988 RP-S5; small subunit ribosomal protein S5
D DAQ1742_03605 rpsF; SSU ribosomal protein S6p K02990 RP-S6; small subunit ribosomal protein S6
D DAQ1742_04057 rpsG; SSU ribosomal protein S7p (S5e) K02992 RP-S7; small subunit ribosomal protein S7
D DAQ1742_04038 rpsH; SSU ribosomal protein S8p (S15Ae) K02994 RP-S8; small subunit ribosomal protein S8
D DAQ1742_00400 rpsI; SSU ribosomal protein S9p (S16e) K02996 RP-S9; small subunit ribosomal protein S9
D DAQ1742_04052 rpsJ; SSU ribosomal protein S10p (S20e) K02946 RP-S10; small subunit ribosomal protein S10
D DAQ1742_04030 rpsK; SSU ribosomal protein S11p (S14e) K02948 RP-S11; small subunit ribosomal protein S11
D DAQ1742_04058 rpsL; SSU ribosomal protein S12p (S23e) K02950 RP-S12; small subunit ribosomal protein S12
D DAQ1742_04031 rpsM; SSU ribosomal protein S13p (S18e) K02952 RP-S13; small subunit ribosomal protein S13
D DAQ1742_00700 rpsO; SSU ribosomal protein S15p (S13e) K02956 RP-S15; small subunit ribosomal protein S15
D DAQ1742_00964 rpsP; SSU ribosomal protein S16p K02959 RP-S16; small subunit ribosomal protein S16
D DAQ1742_04042 rpsQ; SSU ribosomal protein S17p (S11e) K02961 RP-S17; small subunit ribosomal protein S17
D DAQ1742_03603 rpsR; SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent K02963 RP-S18; small subunit ribosomal protein S18
D DAQ1742_04047 rpsS; SSU ribosomal protein S19p (S15e) K02965 RP-S19; small subunit ribosomal protein S19
D DAQ1742_03881 rpsT; SSU ribosomal protein S20p K02968 RP-S20; small subunit ribosomal protein S20
D DAQ1742_00673 rpsU; SSU ribosomal protein S21p K02970 RP-S21; small subunit ribosomal protein S21
D DAQ1742_00288 rplA; LSU ribosomal protein L1p (L10Ae) K02863 RP-L1; large subunit ribosomal protein L1
D DAQ1742_04048 rplB; LSU ribosomal protein L2p (L8e) K02886 RP-L2; large subunit ribosomal protein L2
D DAQ1742_04051 rplC; LSU ribosomal protein L3p (L3e) K02906 RP-L3; large subunit ribosomal protein L3
D DAQ1742_04050 rplD; LSU ribosomal protein L4p (L1e) K02926 RP-L4; large subunit ribosomal protein L4
D DAQ1742_04039 rplE; LSU ribosomal protein L5p (L11e) K02931 RP-L5; large subunit ribosomal protein L5
D DAQ1742_04037 rplF; LSU ribosomal protein L6p (L9e) K02933 RP-L6; large subunit ribosomal protein L6
D DAQ1742_03602 rplI; LSU ribosomal protein L9p K02939 RP-L9; large subunit ribosomal protein L9
D DAQ1742_00289 rplJ; LSU ribosomal protein L10p (P0) K02864 RP-L10; large subunit ribosomal protein L10
D DAQ1742_00287 rplK; LSU ribosomal protein L11p (L12e) K02867 RP-L11; large subunit ribosomal protein L11
D DAQ1742_00290 rplL; LSU ribosomal protein L7/L12 (P1/P2) K02935 RP-L7; large subunit ribosomal protein L7/L12
D DAQ1742_00399 rplM; LSU ribosomal protein L13p (L13Ae) K02871 RP-L13; large subunit ribosomal protein L13
D DAQ1742_04041 rplN; LSU ribosomal protein L14p (L23e) K02874 RP-L14; large subunit ribosomal protein L14
D DAQ1742_04033 rplO; LSU ribosomal protein L15p (L27Ae) K02876 RP-L15; large subunit ribosomal protein L15
D DAQ1742_04044 rplP; LSU ribosomal protein L16p (L10e) K02878 RP-L16; large subunit ribosomal protein L16
D DAQ1742_04027 rplQ; LSU ribosomal protein L17p K02879 RP-L17; large subunit ribosomal protein L17
D DAQ1742_04036 rplR; LSU ribosomal protein L18p (L5e) K02881 RP-L18; large subunit ribosomal protein L18
D DAQ1742_00967 rplS; LSU ribosomal protein L19p K02884 RP-L19; large subunit ribosomal protein L19
D DAQ1742_02475 rplT; LSU ribosomal protein L20p K02887 RP-L20; large subunit ribosomal protein L20
D DAQ1742_00680 rplU; LSU ribosomal protein L21p K02888 RP-L21; large subunit ribosomal protein L21
D DAQ1742_04046 rplV; LSU ribosomal protein L22p (L17e) K02890 RP-L22; large subunit ribosomal protein L22
D DAQ1742_04049 rplW; LSU ribosomal protein L23p (L23Ae) K02892 RP-L23; large subunit ribosomal protein L23
D DAQ1742_04040 rplX; LSU ribosomal protein L24p (L26e) K02895 RP-L24; large subunit ribosomal protein L24
D DAQ1742_00681 rpmA; LSU ribosomal protein L27p K02899 RP-L27; large subunit ribosomal protein L27
D DAQ1742_00217 rmpB; LSU ribosomal protein L28p K02902 RP-L28; large subunit ribosomal protein L28
D DAQ1742_04043 rpmC; LSU ribosomal protein L29p (L35e) K02904 RP-L29; large subunit ribosomal protein L29
D DAQ1742_04034 rpmD; LSU ribosomal protein L30p (L7e) K02907 RP-L30; large subunit ribosomal protein L30
D DAQ1742_03143 ykgM; LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent K02909 RP-L31; large subunit ribosomal protein L31
D DAQ1742_02846 rpmF; LSU ribosomal protein L32p K02911 RP-L32; large subunit ribosomal protein L32
D DAQ1742_00218 rmpG; LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent K02913 RP-L33; large subunit ribosomal protein L33
D DAQ1742_04438 rpmH; LSU ribosomal protein L34p K02914 RP-L34; large subunit ribosomal protein L34
D DAQ1742_02476 rpmI; LSU ribosomal protein L35p K02916 RP-L35; large subunit ribosomal protein L35
D DAQ1742_01978 rplY; LSU ribosomal protein L25p K02897 RP-L25; large subunit ribosomal protein L25
D DAQ1742_00015 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D DAQ1742_00012 Small Subunit Ribosomal RNA; ssuRNA; SSU ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DAQ1742_03514 Small Subunit Ribosomal RNA; ssuRNA; SSU ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DAQ1742_00318 Large Subunit Ribosomal RNA; lsuRNA; LSU ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DAQ1742_00014 Large Subunit Ribosomal RNA; lsuRNA; LSU ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DAQ1742_00275 Large Subunit Ribosomal RNA; lsuRNA; LSU ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:daq03009]
D DAQ1742_01052 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D DAQ1742_03975 orn; 3'-to-5' oligoribonuclease (orn) K13288 orn; oligoribonuclease [EC:3.1.-.-]
D DAQ1742_01053 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
D DAQ1742_00683 obgE; GTPase involved in cell partioning and DNA repair. ObgE might act as a checkpoint in final stages of the 50S subunit assembly under normal growth conditions. And more importantly, ObgE, as a (p)ppGpp effector, might also have a regulatory role in the production of the 50S subunit and its participation in translation under certain stressed conditions. K03979 obgE; GTPase [EC:3.6.5.-]
D DAQ1742_01011 dksA; RNAP-binding protein modulating ppGpp and iNTP regulation K06204 dksA; RNA polymerase-binding transcription factor
D DAQ1742_00696 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
D DAQ1742_03232 nusB; Transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D DAQ1742_00286 nusG; Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D DAQ1742_01982 rsuA; Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D DAQ1742_03860 ksgA; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferas K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D DAQ1742_04022 rsmB; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D DAQ1742_00726 rsmC; Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D DAQ1742_00111 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D DAQ1742_03933 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D DAQ1742_02539 rsmF; Ribosomal RNA small subunit methyltransferase F K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D DAQ1742_04488 rsmG; rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D DAQ1742_03826 rsmH; rRNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D DAQ1742_00414 rsmI; rRNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D DAQ1742_04431 rsmJ; rRNA small subunit methyltransferase J K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D DAQ1742_02451 rrmA; Ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D DAQ1742_03611 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D DAQ1742_00688 rrmJ; Ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D DAQ1742_00619 rlmG; 23S rRNA (guanine-N-2-)-methyltransferase rlmG K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D DAQ1742_03048 rlmH; LSU m3Psi1915 methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D DAQ1742_04428 rlmJ; 23S rRNA m(6)A2030 methyltransferase K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D DAQ1742_02773 rlmL; 23S rRNA (guanine-N-2-)-methyltransferase rlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D DAQ1742_03337 rlmM; LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D DAQ1742_01105 rlmN; Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D DAQ1742_03552 rumA; 23S rRNA (Uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D DAQ1742_02045 rumB; 23S rRNA (Uracil-5-)-methyltransferase rumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D DAQ1742_03855 rluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D DAQ1742_02224 rluB; Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D DAQ1742_02849 rluC; Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D DAQ1742_00975 rluD; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D DAQ1742_02486 rluE; Ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D DAQ1742_03504 yfiF; hypothetical tRNA/rRNA methyltransferase yfiF K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D DAQ1742_00724 rimI; Ribosomal-protein-S18p-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D DAQ1742_02323 rimJ; Ribosomal-protein-S5p-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D DAQ1742_02038 rimK; Ribosomal protein S6 glutaminyl transferase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D DAQ1742_02682 FIG01201438: hypothetical protein K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
D DAQ1742_00965 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D DAQ1742_02022 rimO; Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D DAQ1742_02080 ycaO; FIG00638589: hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D DAQ1742_00344 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D DAQ1742_01306 pmrB; Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D DAQ1742_02493 roxA; Ribosomal oxygenase. 50S ribosomal protein L16 Arg81 hydroxylase K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D DAQ1742_01196 FIG002776: hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D DAQ1742_02850 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D DAQ1742_00359 rng; ribonuclease G involved in 16S rRNA processing K08301 rng; ribonuclease G [EC:3.1.26.-]
D DAQ1742_03936 yqqE; Putative anti-termination factor for Rho-dependent terminators;A yqgF-Ts mutant is sensitive to Rho and NusA overproduction and has reduced transcription of genes following Rho terminators K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D DAQ1742_00704 deaD; ATP-dependent RNA helicase, 50S ribosomal subunit biogenesis; translation factor W2; facilitates translation of mRNAs with 5' secondary structures K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D DAQ1742_01042 srmB; ATP-dependent RNA helicase, 50S ribosomal subunit biogenesis, stabilizes exposed mRNA K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D DAQ1742_03976 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D DAQ1742_01112 der; 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits K03977 engA; GTPase
D DAQ1742_03943 hflX; predicted GTPase K03665 hflX; GTPase
D DAQ1742_04015 tsaC; TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D DAQ1742_00040 spoT; GTP pyrophosphokinase, (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D DAQ1742_00698 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D DAQ1742_00695 rimP; ribosome maturation protein rimP. Factor required for maturation of 30S ribosomal subunits K09748 rimP; ribosome maturation factor RimP
D DAQ1742_01168 ybcJ; FIG002958: hypothetical protein K14761 rlbA; ribosome-associated protein
D DAQ1742_03047 rsfS; Ribosomal silencing factor RsfS (former Iojap) K09710 ybeB; ribosome-associated protein
D DAQ1742_03033 ybeY; Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly K07042 ybeY; probable rRNA maturation factor
D DAQ1742_00686 yhbY; RNA binding protein, associated with pre-50S ribosomal subunits; functions in ribosome assembly K07574 yhbY; RNA-binding protein
D DAQ1742_00372 yjgA; Putative alpha helix protein, ribosome associated protein K09889 yjgA; ribosome-associated protein
D DAQ1742_00379 hpf; Ribosome hibernation protein K05808 hpf; ribosome hibernation promoting factor
D DAQ1742_00973 raiA; Ribosome hibernation protein YfiA K05809 raiA; ribosome-associated inhibitor A
D DAQ1742_02135 ychF; predicted GTP-binding protein, Catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated K06942 ychF; ribosome-binding ATPase
D DAQ1742_02847 yceD; COG1399 protein, clustered with ribosomal protein L32p K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:daq03016]
D DAQ1742_04427 rbn; Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D DAQ1742_02129 rna; Ribonuclease I, Rnase I is usually localized in the periplasmic space. K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D DAQ1742_03575 cca; tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D DAQ1742_01035 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DAQ1742_03521 proS; Prolyl-tRNA synthetase, bacterial type K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D DAQ1742_03877 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DAQ1742_03043 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DAQ1742_02936 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DAQ1742_00822 metG; Methionyl-tRNA synthetase-related protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DAQ1742_03014 glnS; Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D DAQ1742_02319 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DAQ1742_00750 lysS; Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D DAQ1742_02311 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DAQ1742_00951 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DAQ1742_02788 asnS; Asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D DAQ1742_02478 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DAQ1742_02070 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DAQ1742_01167 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DAQ1742_00493 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DAQ1742_01109 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DAQ1742_02474 pheS; Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DAQ1742_03583 Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DAQ1742_02473 pheT; Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DAQ1742_02718 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DAQ1742_04121 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D DAQ1742_00033 dtd; D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D DAQ1742_02831 hinT; purine nucleoside phosphoramidase,HinT is required in E. coli for growth on D-alanine as a sole carbon source. HinT is essential for the activity of the enzyme D-alanine dehydrogenase (DadA) K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D DAQ1742_03367 trmI; tRNA (guanine46-N7-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D DAQ1742_03520 tsaA; tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D DAQ1742_01323 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D DAQ1742_00699 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D DAQ1742_03527 truD; tRNA pseudouridine 13 synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D DAQ1742_01091 iscS; Cysteine desulfurase, IscS subfamily K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DAQ1742_04015 tsaC; TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D DAQ1742_03945 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D DAQ1742_04442 mnmE; GTPase and tRNA-U34 5-formylation enzyme K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D DAQ1742_04489 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D DAQ1742_03594 cysQ; PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D DAQ1742_04439 rnpA; Ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D DAQ1742_02728 rnt; Ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D DAQ1742_00210 rph; ribonuclease PH involved in tRNA processing K00989 rph; ribonuclease PH [EC:2.7.7.56]
D DAQ1742_02701 rnb; Exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D DAQ1742_02436 rnd; Ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D DAQ1742_01013 ligT; 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D DAQ1742_03910 yjjK; ABC transporter, ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
D DAQ1742_04370 glyQ; Glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D DAQ1742_04369 glyS; Glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D DAQ1742_01010 gluQ; glutamyl-Q-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D DAQ1742_03122 ybaK; Cys-tRNA(Pro) deacylase YbaK K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D DAQ1742_01065 tadA; tRNA-specific adenosine-34 deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D DAQ1742_03651 dusA; tRNA dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D DAQ1742_00343 dusB; tRNA dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D DAQ1742_01650 dusC; tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D DAQ1742_03031 miaB; tRNA-i(6)A37 methylthiotransferase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D DAQ1742_02314 cmoA; tRNA methyltransferase, S-adenosyl-L-methionine-dependent methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D DAQ1742_02315 cmoB; tRNA (5-methoxyuridine) 34 synthase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D DAQ1742_02120 smtA; S-adenosylmethionine-dependent methyltransferase Functionally Coupled to the MukBEF Chromosome Partitioning Mechanism K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D DAQ1742_03900 yjtD; tRNA:Cm32/Um32 methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D DAQ1742_04281 trmA; tRNA (Uracil54-C5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D DAQ1742_00966 trmD; tRNA (Guanine37-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D DAQ1742_03504 yfiF; hypothetical tRNA/rRNA methyltransferase yfiF K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D DAQ1742_00039 trmH; tRNA (guanosine(18)-2'-O)-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D DAQ1742_01089 trmJ; tRNA:Cm32/Um32 methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D DAQ1742_00145 trmL; tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D DAQ1742_01043 trmN; tRNA (adenine37-N(6))-methyltransferase TrmN6 K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D DAQ1742_03332 truC; tRNA pseudouridine synthase C K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D DAQ1742_03855 rluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D DAQ1742_02488 mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D DAQ1742_02673 ttcA; tRNA(Cytosine32)-2-thiocytidine synthetase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D DAQ1742_00108 tusA; tRNA 5-methylaminomethyl-2-thiouridine synthase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D DAQ1742_04059 tusB; tRNA 5-methylaminomethyl-2-thiouridine synthase TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D DAQ1742_04060 tusC; tRNA 5-methylaminomethyl-2-thiouridine synthase TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D DAQ1742_04061 tusD; tRNA 5-methylaminomethyl-2-thiouridine synthase TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D DAQ1742_01146 tusE; tRNA 2-thiouridine synthesizing protein E K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D DAQ1742_01093 iscA; Iron binding protein IscA for iron-sulfur cluster assembly K13628 iscA; iron-sulfur cluster assembly protein
D DAQ1742_00741 yqfZ; Iron-sulfur cluster repair protein; plumbagin resistance protein. folate and tetrahydofolate binding. A yfgZ null mutant grows poorly on minimal media, is hypersensitive to oxidative stress K06980 ygfZ; tRNA-modifying protein YgfZ
D DAQ1742_03136 miaE; tRNA-(ms[2]io[6]A)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D DAQ1742_01318 mnmC; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D DAQ1742_03242 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D DAQ1742_03154 queC; Queuosine Biosynthesis QueC ATPase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D DAQ1742_03543 queD; 6-carboxytetrahydropterin synthase @ Queuosine biosynthesis QueD, PTPS-I K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D DAQ1742_03544 queE; 7-carboxy-7-deazaguanine synthase; queuosine biosynthesis K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D DAQ1742_00896 queF; NADPH dependent preQ0 reductase, queunosine biosynthesis K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D DAQ1742_03950 queG; Iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D DAQ1742_03241 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D DAQ1742_03227 thiI; tRNA S(4)U 4-thiouridine synthase / Rhodanese-like domain required for thiamine synthesis K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D DAQ1742_03307 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D DAQ1742_03066 tmcA; tRNA(Met) Cytidine Acetyltransferase. Elongator methionine tRNA (ac4C34) acetyltransferase; tRNA N(4)-acetylcytidine acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D DAQ1742_02440 tsaB; TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D DAQ1742_00674 tsaD; TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D DAQ1742_03948 tsaE; TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D DAQ1742_03342 tcdA; tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D DAQ1742_03613 rnr; 3'-to-5' exoribonuclease RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D DAQ1742_00702 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:daq03012]
D DAQ1742_02707 yciH; Translation initiation factor SUI1-related protein K03113 EIF1; translation initiation factor 1
D DAQ1742_00697 infB; Translation initiation factor 2 K02519 infB; translation initiation factor IF-2
D DAQ1742_02477 Translation initiation factor 3 K02520 infC; translation initiation factor IF-3
D DAQ1742_04077 yheS; Glutathione-regulated potassium-efflux system ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D DAQ1742_01763 Glutathione-regulated potassium-efflux system ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D DAQ1742_03324 tsf; Translation elongation factor Ts K02357 tsf; elongation factor Ts
D DAQ1742_04055 tufA; Translation elongation factor Tu K02358 tuf; elongation factor Tu
D DAQ1742_00284 tufB; Translation elongation factor Tu K02358 tuf; elongation factor Tu
D DAQ1742_04056 fusA; Translation elongation factor G K02355 fusA; elongation factor G
D DAQ1742_02142 prfA; Peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D DAQ1742_03322 frr; Ribosome recycling factor K02838 frr; ribosome recycling factor
D DAQ1742_02143 prmC; Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D DAQ1742_02136 pth; Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D DAQ1742_02060 infA; Translation initiation factor 1 K02518 infA; translation initiation factor IF-1
D DAQ1742_03988 efp; Translation elongation factor P K02356 efp; elongation factor P
D DAQ1742_01991 yeiP; Translation elongation factor P-related protein K02356 efp; elongation factor P
D DAQ1742_03979 poxA; Translation elongation factor P Lys34:lysine transferase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D DAQ1742_03989 epmB; Lysyl-lysine 2,3-aminomutase K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D DAQ1742_01310 yfcM; Putative transporting ATPase K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D DAQ1742_00749 prfB; Peptide chain release factor 2; programmed frameshift-containing K02836 prfB; peptide chain release factor 2
D DAQ1742_00560 prfC; Peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D DAQ1742_04025 yhdL; alternative ribosome-rescue factor K09890 arfA; alternative ribosome-rescue factor
C 03110 Chaperones and folding catalysts [BR:daq03110]
D DAQ1742_02059 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D DAQ1742_00977 clpB; ClpB protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D DAQ1742_03212 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D DAQ1742_04297 hslU; ATP-dependent hsl protease ATP-binding subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D DAQ1742_03130 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D DAQ1742_03886 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D DAQ1742_01096 hscA; Chaperone protein HscA K04044 hscA; molecular chaperone HscA
D DAQ1742_02815 yegD; Putative heat shock protein YegD K04046 yegD; hypothetical chaperone protein
D DAQ1742_00595 groL; Heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DAQ1742_03885 dnaJ; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D DAQ1742_03856 dijA; DnaJ-like protein DjlA K05801 djlA; DnaJ like chaperone protein
D DAQ1742_01094 hscB; Chaperone protein HscB K04082 hscB; molecular chaperone HscB
D DAQ1742_04139 hslO; 33 kDa chaperonin (Heat shock protein 33) (HSP33) K04083 hslO; molecular chaperone Hsp33
D DAQ1742_00842 grpE; Heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D DAQ1742_00077 ibpA; 16 kDa heat shock protein A K04080 ibpA; molecular chaperone IbpA
D DAQ1742_00078 ibpB; 16 kDa heat shock protein B K04081 ibpB; molecular chaperone IbpB
D DAQ1742_04138 hslR; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 hslR; ribosome-associated heat shock protein Hsp15
D DAQ1742_00594 groS; Heat shock protein 60 family co-chaperone GroES K04078 groES; chaperonin GroES
D DAQ1742_01023 degP; serine endoprotease (protease Do), membrane-associated K04771 degP; serine protease Do [EC:3.4.21.107]
D DAQ1742_00689 ftsH; subunit of integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D DAQ1742_04485 atpB; ATP synthase F0 sector subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D DAQ1742_00919 fimC; chaperone FimC K07346 fimC; fimbrial chaperone protein
D DAQ1742_00238 secB; Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) K03071 secB; preprotein translocase subunit SecB
D DAQ1742_00153 cpxP; P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein K06006 cpxP; periplasmic protein CpxP/Spy
D DAQ1742_00627 spy; Spy is an ATP-independent chaperone that suppresses protein aggregation and aids protein refolding in the periplasm (Quan, 2011). Spy is induced by zinc and envelope stress, dependent on both CpxR and BaeSR. Spy and CpxP are paralogs. K06006 cpxP; periplasmic protein CpxP/Spy
D DAQ1742_01376 hybF; [NiFe] hydrogenase nickel incorporation protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D DAQ1742_01379 hypB; [NiFe] hydrogenase nickel incorporation-associated protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D DAQ1742_04118 ppiA; Peptidyl-prolyl cis-trans isomerase PpiA precursor K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D DAQ1742_01165 ppiB; Peptidyl-prolyl cis-trans isomerase PpiB K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D DAQ1742_03209 ppiD; Peptidyl-prolyl cis-trans isomerase PpiD K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D DAQ1742_04066 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D DAQ1742_03600 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D DAQ1742_03875 fkpB; Peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D DAQ1742_04073 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D DAQ1742_04253 ppiC; Peptidyl-prolyl cis-trans isomerase PpiC K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D DAQ1742_03858 surA; Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D DAQ1742_04248 trxA; Thioredoxin K03671 TXN; thioredoxin
D DAQ1742_03505 trxC; Thioredoxin 2 K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D DAQ1742_03097 ybbN; YbbN is a co-chaperone for both DnaJKGrpE and GroESL(Lin, 2011) K05838 ybbN; putative thioredoxin
D DAQ1742_02035 grxA; Glutaredoxin 1 K03674 grxA; glutaredoxin 1
D DAQ1742_02325 grxB; Glutaredoxin 2 K03675 grxB; glutaredoxin 2
D DAQ1742_02729 grxD; Glutaredoxin-related protein K07390 grxD; monothiol glutaredoxin
D DAQ1742_00020 dsbA; Periplasmic thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D DAQ1742_02505 dsbB; Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D DAQ1742_00747 dsbC; Thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D DAQ1742_00589 dsbD; Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
C 04131 Membrane trafficking [BR:daq04131]
D DAQ1742_01104 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D DAQ1742_02275 gapA; NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DAQ1742_02958 gpmA; Phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DAQ1742_02756 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DAQ1742_02297 pykA; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DAQ1742_03130 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:daq03051]
D DAQ1742_03130 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:daq03032]
D DAQ1742_00989 rnhA; Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D DAQ1742_01909 macromolecule metabolism; macromolecule synthesis, modification; dna-replication, repair, restr./modif. K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DAQ1742_02641 Modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DAQ1742_00311 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha
D DAQ1742_03210 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D DAQ1742_02472 himA; Integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha
D DAQ1742_02085 himD; Integration host factor beta subunit K05788 ihfB; integration host factor subunit beta
D DAQ1742_04436 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D DAQ1742_03656 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D DAQ1742_00672 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D DAQ1742_03738 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DAQ1742_01284 Putative single stranded DNA-binding protein of prophage K03111 ssb; single-strand DNA-binding protein
D DAQ1742_03310 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DAQ1742_04435 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DAQ1742_00494 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DAQ1742_03045 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DAQ1742_02835 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DAQ1742_00990 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DAQ1742_03133 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DAQ1742_00725 holD; DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D DAQ1742_02289 holE; DNA polymerase III theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D DAQ1742_03311 rnhB; ribonuclease HII nicks DNA 5' to misincorporated ribonucleotides K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D DAQ1742_00022 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DAQ1742_03569 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DAQ1742_00043 ligB; DNA ligase, LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DAQ1742_02190 tus; DNA replication terminus site-binding protein K10748 tus; DNA replication terminus site-binding protein
D DAQ1742_01910 Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D DAQ1742_04124 dam; Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D DAQ1742_03006 seqA; SeqA protein, negative modulator of initiation of replication K03645 seqA; negative modulator of initiation of replication
D DAQ1742_03075 hda; ATPase regulatory factor involved in DnaA inactivation K10763 hda; DnaA-homolog protein
D DAQ1742_03112 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D DAQ1742_04433 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D DAQ1742_00427 parC; Topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D DAQ1742_00423 parE; Topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D DAQ1742_02217 topA; DNA topoisomerase I, omega subunit K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D DAQ1742_02268 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:daq03036]
D DAQ1742_01909 macromolecule metabolism; macromolecule synthesis, modification; dna-replication, repair, restr./modif. K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DAQ1742_02641 Modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DAQ1742_01052 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D DAQ1742_02257 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
D DAQ1742_01851 DNA-binding protein, H-NS family K03746 hns; DNA-binding protein H-NS
D DAQ1742_01198 DNA-binding protein of the H-NS family K03746 hns; DNA-binding protein H-NS
D DAQ1742_00311 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha
D DAQ1742_03210 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D DAQ1742_02472 himA; Integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha
D DAQ1742_02085 himD; Integration host factor beta subunit K05788 ihfB; integration host factor subunit beta
D DAQ1742_01585 Right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D DAQ1742_03904 rob; DNA-binding transcriptional activator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D DAQ1742_04436 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D DAQ1742_00411 diaA; DnaA initiator-associating factor, Phosphoheptose isomerase K12961 diaA; DnaA initiator-associating protein
D DAQ1742_01144 hspQ; DNA-binding protein, hemimethylated, heat shock protein K11940 hspQ; heat shock protein HspQ
D DAQ1742_01728 dps; Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase K04047 dps; starvation-inducible DNA-binding protein
D DAQ1742_02921 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase K04047 dps; starvation-inducible DNA-binding protein
D DAQ1742_00342 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DAQ1742_03944 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D DAQ1742_03916 argP; Chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D DAQ1742_02066 lrp; Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DAQ1742_04418 transcriptional regulator, AsnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DAQ1742_01974 yejK; nucleotide associated protein, Spermidine nucleoid-associated protein, function unknown K06899 ndpA; nucleoid-associated protein
D DAQ1742_02123 mukB; predicted bifunctional chromosome partitioning protein and nucleotide hydrolase K03632 mukB; chromosome partition protein MukB
D DAQ1742_02122 mukE; chromosome condensin subunit K03804 mukE; chromosome partition protein MukE
D DAQ1742_02121 mukF; Involved in chromosome partioning, Ca2+ binding protein K03633 mukF; chromosome partition protein MukF
D DAQ1742_03814 ftsA; Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D DAQ1742_03530 ftsB; Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage K05589 ftsB; cell division protein FtsB
D DAQ1742_00114 ftsE; Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) K09812 ftsE; cell division transport system ATP-binding protein
D DAQ1742_03824 ftsI; Cell division protein FtsI [Peptidoglycan synthetase] K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D DAQ1742_02067 ftsK; Cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D DAQ1742_03825 ftsL; Cell division protein FtsL K03586 ftsL; cell division protein FtsL
D DAQ1742_04295 ftsN; Cell division protein FtsN K03591 ftsN; cell division protein FtsN
D DAQ1742_03815 ftsQ; Cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D DAQ1742_03819 ftsW; Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D DAQ1742_00115 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D DAQ1742_03813 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D DAQ1742_00872 zipA; cell division protein involved in Z ring assembly K03528 zipA; cell division protein ZipA
D DAQ1742_00554 zapA; Z-ring-associated protein ZapA K09888 zapA; cell division protein ZapA
D DAQ1742_04300 zapB; Z-ring-associated protein. FtsZ stabilizer, coiled-coil protein; septal ring assembly factor, stimulates cell division K09892 zapB; cell division protein ZapB
D DAQ1742_02775 zapC; Z-ring-associated protein. FtsZ stabilizer K18657 zapC; cell division protein ZapC
D DAQ1742_03806 zapD; FIG002842: hypothetical protein K18778 zapD; cell division protein ZapD
D DAQ1742_00398 yhcM; ATPase, AFG1 family K06916 zapE; cell division protein ZapE
D DAQ1742_03601 Putative cell envelope opacity-associated protein A K07269 ytfB; cell division protein YtfB
D DAQ1742_03947 amiB; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DAQ1742_03350 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DAQ1742_03141 acrA; Acriflavin resistance protein A; Probable RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D DAQ1742_03972 Membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D DAQ1742_02433 minC; Septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D DAQ1742_02434 minD; Septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D DAQ1742_02435 minE; Cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D DAQ1742_01136 sulA; Cell division inhibitor K13053 sulA; cell division inhibitor SulA
D DAQ1742_00212 slmA; Transcriptional regulator SlmA, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D DAQ1742_03006 seqA; SeqA protein, negative modulator of initiation of replication K03645 seqA; negative modulator of initiation of replication
D DAQ1742_00355 mreB; Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D DAQ1742_00356 mreC; Rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D DAQ1742_00357 mreD; Rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D DAQ1742_03050 mrdB; Rod shape-determining protein K05837 rodA; rod shape determining protein RodA
D DAQ1742_00427 parC; Topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D DAQ1742_00423 parE; Topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D DAQ1742_04489 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D DAQ1742_04488 rsmG; rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D DAQ1742_04200 xerC; Tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D DAQ1742_02348 FIG00613045: hypothetical protein K04763 xerD; integrase/recombinase XerD
D DAQ1742_02354 FIG00613045: hypothetical protein K04763 xerD; integrase/recombinase XerD
D DAQ1742_00746 xerD; Tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D DAQ1742_02935 mrp; Scaffold protein for [4Fe-4S] cluster assembly K03593 mrp; ATP-binding protein involved in chromosome partitioning
D DAQ1742_00023 yihA; GTP-binding protein, GTPase, Der paralog. GTP-binding protein required for normal cell division; Dassain (1999) made a viable null mutant that grows slowly and forms filaments in E.coli. Filamentation phenotype is suppressed by overexpression of ftsQI, ftsA and ftsZ. K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:daq03400]
D DAQ1742_02151 ogt; O-6-alkylguanine-DNA:cysteine-protein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D DAQ1742_02995 phr; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D DAQ1742_01039 ung; Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D DAQ1742_03368 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D DAQ1742_02214 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D DAQ1742_03808 mutT; Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D DAQ1742_02128 putative MutT family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D DAQ1742_00213 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D DAQ1742_00881 alkB; Alkylated DNA repair protein AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
D DAQ1742_04373 tagA; DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D DAQ1742_00219 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D DAQ1742_02990 nei; Endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D DAQ1742_02266 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D DAQ1742_02000 nfo; Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D DAQ1742_00309 nfi; Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D DAQ1742_00748 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DAQ1742_03569 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DAQ1742_00043 ligB; DNA ligase, LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DAQ1742_00022 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DAQ1742_03736 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D DAQ1742_01617 uvrB; Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D DAQ1742_01873 uvrC; Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D DAQ1742_04198 uvrD; ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DAQ1742_00291 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D DAQ1742_00292 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D DAQ1742_04028 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D DAQ1742_00041 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D DAQ1742_02812 mfd; Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D DAQ1742_03302 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D DAQ1742_03946 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D DAQ1742_03362 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D DAQ1742_02110 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D DAQ1742_01115 xseA; Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D DAQ1742_03228 xseB; Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DAQ1742_03310 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DAQ1742_04435 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DAQ1742_00494 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DAQ1742_03045 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DAQ1742_02835 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DAQ1742_00990 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DAQ1742_03133 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DAQ1742_00725 holD; DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D DAQ1742_02289 holE; DNA polymerase III theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D DAQ1742_03738 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DAQ1742_01284 Putative single stranded DNA-binding protein of prophage K03111 ssb; single-strand DNA-binding protein
D DAQ1742_01910 Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D DAQ1742_04124 dam; Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D DAQ1742_01955 recB; Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D DAQ1742_01954 recC; Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D DAQ1742_01956 recD; Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D DAQ1742_00949 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D DAQ1742_02305 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D DAQ1742_02304 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D DAQ1742_02308 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D DAQ1742_04293 priA; Helicase PriA essential for oriC/DnaA-independent DNA replication K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D DAQ1742_03604 priB; Primosomal replication protein N K02686 priB; primosomal replication protein N
D DAQ1742_03137 priC; Primosomal replication protein N prime prime K04067 priC; primosomal replication protein N''
D DAQ1742_03257 sbcC; exonuclease, dsDNA, ATP-dependent K03546 sbcC; DNA repair protein SbcC/Rad50
D DAQ1742_03256 sbcD; exonuclease, dsDNA, ATP-dependent K03547 sbcD; DNA repair protein SbcD/Mre11
D DAQ1742_00557 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D DAQ1742_04434 recF; DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D DAQ1742_02519 FIG01183406: hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D DAQ1742_00038 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D DAQ1742_01054 recO; DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D DAQ1742_03131 recR; Recombination protein RecR K06187 recR; recombination protein RecR
D DAQ1742_00840 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D DAQ1742_02644 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC
D DAQ1742_03260 rdgC; DNA recombination-dependent growth factor C. Competitive inhibitor of RecA function; nucleoid-associated ssDNA and dsDNA binding protein K03554 rdgC; recombination associated protein RdgC
D DAQ1742_03729 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D DAQ1742_00452 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D DAQ1742_01979 yejH; ATP-dependent RNA helicase YejH K19789 radD; DNA repair protein RadD
D DAQ1742_03112 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D DAQ1742_04433 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D DAQ1742_02217 topA; DNA topoisomerase I, omega subunit K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D DAQ1742_00311 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha
D DAQ1742_03210 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D DAQ1742_00342 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DAQ1742_02472 himA; Integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha
D DAQ1742_02085 himD; Integration host factor beta subunit K05788 ihfB; integration host factor subunit beta
D DAQ1742_04191 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D DAQ1742_02257 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
D DAQ1742_01851 DNA-binding protein, H-NS family K03746 hns; DNA-binding protein H-NS
D DAQ1742_01198 DNA-binding protein of the H-NS family K03746 hns; DNA-binding protein H-NS
D DAQ1742_03459 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D DAQ1742_00600 lexA; SOS-response repressor and protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D DAQ1742_03852 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D DAQ1742_02853 dinI; DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D DAQ1742_00950 recX; inhibitor of RecA K03565 recX; regulatory protein
D DAQ1742_04252 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D DAQ1742_01140 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D DAQ1742_02441 yoaA; conserved protein with nucleoside triphosphate hydrolase domain K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D DAQ1742_01666 dinG; ATP-dependent helicase DinG/Rad3 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D DAQ1742_03114 nrdA; Ribonucleotide reductase of class Ia (aerobic), alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D DAQ1742_03115 nrdB; Ribonucleotide reductase of class Ia (aerobic), beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:daq03029]
D DAQ1742_00697 infB; Translation initiation factor 2 K02519 infB; translation initiation factor IF-2
D DAQ1742_02477 Translation initiation factor 3 K02520 infC; translation initiation factor IF-3
D DAQ1742_03324 tsf; Translation elongation factor Ts K02357 tsf; elongation factor Ts
D DAQ1742_04055 tufA; Translation elongation factor Tu K02358 tuf; elongation factor Tu
D DAQ1742_00284 tufB; Translation elongation factor Tu K02358 tuf; elongation factor Tu
D DAQ1742_04056 fusA; Translation elongation factor G K02355 fusA; elongation factor G
D DAQ1742_01053 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
D DAQ1742_02718 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DAQ1742_03043 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DAQ1742_02311 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DAQ1742_02319 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DAQ1742_03738 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DAQ1742_01284 Putative single stranded DNA-binding protein of prophage K03111 ssb; single-strand DNA-binding protein
D DAQ1742_03317 bamA; Beta-barrel assembly machine. Outer membrane protein required for OM biogenesis; in BamABCDE complex K07277 SAM50; outer membrane protein insertion porin family
D DAQ1742_03886 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D DAQ1742_00842 grpE; Heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D DAQ1742_00595 groL; Heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DAQ1742_00594 groS; Heat shock protein 60 family co-chaperone GroES K04078 groES; chaperonin GroES
D DAQ1742_03885 dnaJ; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D DAQ1742_01091 iscS; Cysteine desulfurase, IscS subfamily K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DAQ1742_01094 hscB; Chaperone protein HscB K04082 hscB; molecular chaperone HscB
D DAQ1742_02729 grxD; Glutaredoxin-related protein K07390 grxD; monothiol glutaredoxin
D DAQ1742_02935 mrp; Scaffold protein for [4Fe-4S] cluster assembly K03593 mrp; ATP-binding protein involved in chromosome partitioning
D DAQ1742_03222 cyoE; Heme O synthase, protoheme IX farnesyltransferase COX10-CtaB K02257 COX10; heme o synthase [EC:2.5.1.141]
D DAQ1742_04441 yidC; Inner membrane protein translocase component YidC, long form K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DAQ1742_03130 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:daq02000]
D DAQ1742_02113 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D DAQ1742_03151 mdlA; predicted ATP-binding component of multidrug ABC transporter K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D DAQ1742_03150 mdlB; predicted ATP-binding component of multidrug ABC transporter K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D DAQ1742_01061 Type I secretion system ATPase, LssB family LapB K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D DAQ1742_02172 prtD; ABC-type protease exporter, ATP-binding component PrtD/AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D DAQ1742_02062 cydC; membrane and ATP-binding components of an ABC superfamily cysteine transporter K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D DAQ1742_02063 cydD; cysteine transporter subunit of ABC superfamily. glutathione/cysteine ABC transporter permease/ATPase; exports cysteine to periplasm as required for cytochrome assembly K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D DAQ1742_00861 macB; Macrolide export ATP-binding/permease protein MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D DAQ1742_01455 ABC transporter ATP-binding protein K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
D DAQ1742_00853 yddA; Hypothetical ABC transporter ATP-binding protein yddA K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D DAQ1742_00720 ABC transporter ATP-binding protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D DAQ1742_02772 uup; ABC transporter ATP-binding protein uup K15738 uup; ABC transport system ATP-binding/permease protein
D DAQ1742_01025 sbp; Sulfate and thiosulfate binding protein CysP K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DAQ1742_01026 cysU; Sulfate transport system permease protein CysU K02046 cysU; sulfate/thiosulfate transport system permease protein
D DAQ1742_01027 cysW; Sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D DAQ1742_01028 cysA; Sulfate and thiosulfate import ATP-binding protein CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D DAQ1742_02944 modA; Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) K02020 modA; molybdate transport system substrate-binding protein
D DAQ1742_02943 modB; Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) K02018 modB; molybdate transport system permease protein
D DAQ1742_02942 modC; Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D DAQ1742_02948 modF; Putative molybdenum transport ATP-binding protein modF K05776 modF; molybdate transport system ATP-binding protein
D DAQ1742_02779 ssuA; Alkanesulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DAQ1742_01552 atsR_2; Alkanesulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DAQ1742_01570 astR_1; Alkanesulfonates-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D DAQ1742_02781 ssuC; Alkanesulfonates transport system permease protein K15554 ssuC; sulfonate transport system permease protein
D DAQ1742_01548 astB_2; Alkanesulfonates transport system permease protein K15554 ssuC; sulfonate transport system permease protein
D DAQ1742_01569 astB_1; Alkanesulfonates transport system permease protein K15554 ssuC; sulfonate transport system permease protein
D DAQ1742_02782 ssuB; Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D DAQ1742_01568 astC; Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D DAQ1742_01639 sfuA; Ferric iron ABC transporter, iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D DAQ1742_01640 sfuB; Ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D DAQ1742_00996 Ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D DAQ1742_01641 sfuC; Ferric iron ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D DAQ1742_00997 Ferric iron ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D DAQ1742_03845 thiB; Thiamin ABC transporter, substrate-binding component K02064 thiB; thiamine transport system substrate-binding protein
D DAQ1742_03846 thiP; Thiamin ABC transporter, transmembrane component K02063 thiP; thiamine transport system permease protein
D DAQ1742_03847 thiQ; Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D DAQ1742_02040 potF; Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) K11073 potF; putrescine transport system substrate-binding protein
D DAQ1742_02043 potI; Putrescine transport system permease protein PotI (TC 3.A.1.11.2) K11074 potI; putrescine transport system permease protein
D DAQ1742_02042 potH; Putrescine transport system permease protein PotH (TC 3.A.1.11.2) K11075 potH; putrescine transport system permease protein
D DAQ1742_02041 potG; Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D DAQ1742_02508 potD; ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D DAQ1742_03646 phnS; Putative ABC-type 2-aminoethylphosphonate transport system, periplasmic component K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D DAQ1742_02506 potC; Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D DAQ1742_03643 phnV2; ABC-type 2-aminoethylphosphonate transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D DAQ1742_02507 potB; Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D DAQ1742_03644 phnV1; ABC-type 2-aminoethylphosphonate transport system, permease component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D DAQ1742_02513 ydcT; Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D DAQ1742_03642 potA; Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D DAQ1742_03494 proX; L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) K02002 proX; glycine betaine/proline transport system substrate-binding protein
D DAQ1742_03493 proW; L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) K02001 proW; glycine betaine/proline transport system permease protein
D DAQ1742_03492 proV; L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D DAQ1742_04359 Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D DAQ1742_04395 Pyrimidine ABC transporter, substrate-binding component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D DAQ1742_01770 ABC-type anion transport system, duplicated permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D DAQ1742_04360 Urea carboxylase-related ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D DAQ1742_04396 Pyrimidine ABC transporter, transmembrane component 2 K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D DAQ1742_04397 Pyrimidine ABC transporter, transmembrane component 1 K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D DAQ1742_01769 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D DAQ1742_04361 Urea carboxylase-related ABC transporter, ATPase protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D DAQ1742_04398 Pyrimidine ABC transporter, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D DAQ1742_03763 Various polyols ABC transporter, ATP-binding component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DAQ1742_01186 ganK; ATP-binding component of transport system for galactan K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DAQ1742_01187 ganE; periplasmic binding protein of galactan transport system K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D DAQ1742_01188 ganF; galactan ABC transport system, permease component K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D DAQ1742_01189 ganG; galactan ABC transport system, permease component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D DAQ1742_02200 araF; L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) K10537 araF; L-arabinose transport system substrate-binding protein
D DAQ1742_02198 araH; L-arabinose transport system permease protein (TC 3.A.1.2.2) K10538 araH; L-arabinose transport system permease protein
D DAQ1742_02199 araG; L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D DAQ1742_02463 togB; Sugar-binding protein precursor K10192 togB; oligogalacturonide transport system substrate-binding protein
D DAQ1742_03540 Sugar-binding protein precursor K10192 togB; oligogalacturonide transport system substrate-binding protein
D DAQ1742_02460 togM; Putative ABC sugar transporter K10193 togM; oligogalacturonide transport system permease protein
D DAQ1742_02461 togN; oligogalacturonide ABC transporter, permease component K10194 togN; oligogalacturonide transport system permease protein
D DAQ1742_02462 togA; oligogalacturonide ABC transporter, ATPase component K10195 togA; oligogalacturonide transport system ATP-binding protein
D DAQ1742_03767 aguE_2; alpha 1-4 digalacturonate or N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein K17241 aguE; alpha-1,4-digalacturonate transport system substrate-binding protein
D DAQ1742_03762 aruF_2; alpha 1-4 digalacturonate, ABC transporter, membrane spanning protein K17242 aguF; alpha-1,4-digalacturonate transport system permease protein
D DAQ1742_03761 aruG_2; alpha 1-4 digalacturonate ABC transport system, permease protein K17243 aguG; alpha-1,4-digalacturonate transport system permease protein
D DAQ1742_03083 mglB; Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) K10540 mglB; methyl-galactoside transport system substrate-binding protein
D DAQ1742_03086 mglC; Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3) K10541 mglC; methyl-galactoside transport system permease protein
D DAQ1742_03085 mglA; Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D DAQ1742_00009 rbsB; Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) K10439 rbsB; ribose transport system substrate-binding protein
D DAQ1742_00008 rbsC; Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) K10440 rbsC; ribose transport system permease protein
D DAQ1742_00007 rbsA; Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D DAQ1742_00804 ibpA; Inositol transport system sugar-binding protein K17208 ibpA; inositol transport system substrate-binding protein
D DAQ1742_00806 iatP; Inositol transport system permease protein K17209 iatP; inositol transport system permease protein
D DAQ1742_00805 iatA; Inositol transport system ATP-binding protein K17210 iatA; inositol transport system ATP-binding protein
D DAQ1742_00138 ugpB; Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3) K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D DAQ1742_00139 ugpA; Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D DAQ1742_00140 ugpE; Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3) K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D DAQ1742_00141 ugpC; Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3) K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D DAQ1742_00390 mlaD; MlaFEDCB phospholipid ABC transporter; maintains OM lipid asymmetry K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D DAQ1742_00389 mlaE; MlaFEDCB phospholipid ABC transporter; maintains OM lipid asymmetry K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D DAQ1742_00388 mlaF; MlaFEDCB phospholipid ABC transporter; maintains OM lipid asymmetry. MlaFEDCB is a predicted ABC import system that probably maintains outer membrane lipid asymmetry by retrograde import of phospholipids from the outer leaflet of the OM K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D DAQ1742_00391 mlaC; MlaFEDCB phospholipid ABC transporter; maintains OM lipid asymmetry K07323 mlaC; phospholipid transport system substrate-binding protein
D DAQ1742_00392 mlaB; MlaFEDCB phospholipid ABC transporter; maintains OM lipid asymmetry K07122 mlaB; phospholipid transport system transporter-binding protein
D DAQ1742_02938 Putative sugar ABC transporter precursor K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D DAQ1742_02005 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) K02057 ABC.SS.P; simple sugar transport system permease protein
D DAQ1742_02006 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DAQ1742_04472 pstS; Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) K02040 pstS; phosphate transport system substrate-binding protein
D DAQ1742_03251 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) K02040 pstS; phosphate transport system substrate-binding protein
D DAQ1742_04471 pstC; Phosphate transport system permease protein PstC (TC 3.A.1.7.1) K02037 pstC; phosphate transport system permease protein
D DAQ1742_01155 pstC; Phosphate transport system permease protein PstC (TC 3.A.1.7.1) K02037 pstC; phosphate transport system permease protein
D DAQ1742_04470 pstA; Phosphate transport system permease protein PstA (TC 3.A.1.7.1) K02038 pstA; phosphate transport system permease protein
D DAQ1742_01156 pstA; Phosphate transport system permease protein PstA (TC 3.A.1.7.1) K02038 pstA; phosphate transport system permease protein
D DAQ1742_04469 pstB; Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D DAQ1742_01157 pstB; Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D DAQ1742_01407 hisJ; Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D DAQ1742_01336 hisM; Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) K10015 hisM; histidine transport system permease protein
D DAQ1742_01335 hisQ; Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) K10016 hisQ; histidine transport system permease protein
D DAQ1742_01337 hisP; Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_01334 hisJ; Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) K10014 hisJ; histidine transport system substrate-binding protein
D DAQ1742_01726 glnH; Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) K10036 glnH; glutamine transport system substrate-binding protein
D DAQ1742_01725 glnP; Glutamine transport membrane-spanning protein K10037 glnP; glutamine transport system permease protein
D DAQ1742_01724 glnQ; Glutamine transport ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_02046 artJ; Arginine ABC transporter, periplasmic arginine-binding protein ArtJ K09996 artJ; arginine transport system substrate-binding protein
D DAQ1742_02049 artI; Arginine ABC transporter, periplasmic arginine-binding protein ArtI K09997 artI; arginine transport system substrate-binding protein
D DAQ1742_02047 artM; Arginine ABC transporter, permease protein ArtM K09998 artM; arginine transport system permease protein
D DAQ1742_02048 artQ; Arginine ABC transporter, permease protein ArtQ K09999 artQ; arginine transport system permease protein
D DAQ1742_02050 artP; Arginine ABC transporter, ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_03037 gltI; Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D DAQ1742_03040 gltK; Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4) K10002 gltK; glutamate/aspartate transport system permease protein
D DAQ1742_03039 gltJ; Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4) K10003 gltJ; glutamate/aspartate transport system permease protein
D DAQ1742_03041 gltL; Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_04218 aapJ; amino-acid transporter subunit; periplasmic-binding component of ABC superfamily K09969 aapJ; general L-amino acid transport system substrate-binding protein
D DAQ1742_00337 yhdW; Glutamate Aspartate periplasmic binding protein precursor (TC 3.A.1.3.4) K09969 aapJ; general L-amino acid transport system substrate-binding protein
D DAQ1742_04219 aapQ; amino-acid transporter subunit; membrane component of ABC superfamily K09970 aapQ; general L-amino acid transport system permease protein
D DAQ1742_00336 yhdX; Glutamate Aspartate transport system permease protein (TC 3.A.1.3.4) K09970 aapQ; general L-amino acid transport system permease protein
D DAQ1742_04220 aapM; amino-acid transporter subunit; membrane component of ABC superfamily K09971 aapM; general L-amino acid transport system permease protein
D DAQ1742_00335 yhdY; Glutamate Aspartate transport system permease protein (TC 3.A.1.3.4) K09971 aapM; general L-amino acid transport system permease protein
D DAQ1742_04221 aapP; amino acid ABC transporter, ATP-binding protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_00334 yhdZ; ABC-type polar amino acid transport system, ATPase component K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_00339 fliY; Cystine-binding periplasmic protein precursor K02424 tcyA; L-cystine transport system substrate-binding protein
D DAQ1742_00338 yecS; Cystine ABC transporter, permease protein K10009 tcyB; L-cystine transport system permease protein
D DAQ1742_00118 livK; High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DAQ1742_00828 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D DAQ1742_00119 livH; High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) K01997 livH; branched-chain amino acid transport system permease protein
D DAQ1742_00120 livM; Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) K01998 livM; branched-chain amino acid transport system permease protein
D DAQ1742_00121 livG; Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) K01995 livG; branched-chain amino acid transport system ATP-binding protein
D DAQ1742_00122 livF; Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D DAQ1742_03518 metQ; Methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D DAQ1742_02024 Methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D DAQ1742_01561 Methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D DAQ1742_03517 metI; Methionine ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D DAQ1742_02026 metI2; Methionine ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D DAQ1742_01563 Methionine ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D DAQ1742_03516 metN; Methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D DAQ1742_02025 metN2; Methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D DAQ1742_01562 Methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D DAQ1742_04225 Arginine ABC transporter, periplasmic arginine-binding protein ArtJ K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D DAQ1742_04224 Amino acid ABC transporter, permease protein K16962 yxeN; putative S-methylcysteine transport system permease protein
D DAQ1742_04223 ABC-type polar amino acid transport system, ATPase component K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein
D DAQ1742_04467 Cystine ABC transporter, periplasmic cystine-binding protein FliY K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D DAQ1742_03958 Periplasmic binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D DAQ1742_03959 Periplasmic binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D DAQ1742_03476 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D DAQ1742_03087 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D DAQ1742_02405 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D DAQ1742_04465 Glutamate transport membrane-spanning protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D DAQ1742_04466 Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4) K02029 ABC.PA.P; polar amino acid transport system permease protein
D DAQ1742_03961 Amino acid ABC transporter permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D DAQ1742_03474 Putative amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D DAQ1742_03475 amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D DAQ1742_03088 Amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D DAQ1742_02413 ABC transporter permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D DAQ1742_02414 ABC transporter permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D DAQ1742_02415 Cystine ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_03473 Glutamate transport ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_03962 Amino acid ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D DAQ1742_02251 oppA; Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) K15580 oppA; oligopeptide transport system substrate-binding protein
D DAQ1742_02676 mppA; Periplasmic Murein Peptide-Binding Protein MppA K15580 oppA; oligopeptide transport system substrate-binding protein
D DAQ1742_02714 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein, OppA family K15580 oppA; oligopeptide transport system substrate-binding protein
D DAQ1742_02249 oppB; Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) K15581 oppB; oligopeptide transport system permease protein
D DAQ1742_02248 oppC; Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) K15582 oppC; oligopeptide transport system permease protein
D DAQ1742_02247 oppD; Oligopeptide transport system permease protein OppD (TC 3.A.1.5.1) K15583 oppD; oligopeptide transport system ATP-binding protein
D DAQ1742_02246 oppF; Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) K10823 oppF; oligopeptide transport system ATP-binding protein
D DAQ1742_01648 dppA; Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) K12368 dppA; dipeptide transport system substrate-binding protein
D DAQ1742_00085 dppA; Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) K12368 dppA; dipeptide transport system substrate-binding protein
D DAQ1742_00086 dppB; Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) K12369 dppB; dipeptide transport system permease protein
D DAQ1742_00087 dppC; Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) K12370 dppC; dipeptide transport system permease protein
D DAQ1742_00088 dppD; Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) K12371 dppD; dipeptide transport system ATP-binding protein
D DAQ1742_00089 dppF; Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) K12372 dppF; dipeptide transport system ATP-binding protein
D DAQ1742_02694 sapA; Peptide transport periplasmic protein sapA (TC 3.A.1.5.5) K19226 sapA; cationic peptide transport system substrate-binding protein
D DAQ1742_02695 sapB; Peptide transport system permease protein SapB K19227 sapB; cationic peptide transport system permease protein
D DAQ1742_02696 sapC; Peptide transport system permease protein sapC (TC 3.A.1.5.5) K19228 sapC; cationic peptide transport system permease protein
D DAQ1742_02697 sapD; Peptide transport system ATP-binding protein SapD (TC 3.A.1.5.5) K19229 sapD; cationic peptide transport system ATP-binding protein
D DAQ1742_02698 sapF; Peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein
D DAQ1742_01587 nikA; Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) K15584 nikA; nickel transport system substrate-binding protein
D DAQ1742_01588 nikB; Nickel transport system permease protein NikB (TC 3.A.1.5.3) K15585 nikB; nickel transport system permease protein
D DAQ1742_01589 nikC; Nickel transport system permease protein NikC (TC 3.A.1.5.3) K15586 nikC; nickel transport system permease protein
D DAQ1742_01590 Oligopeptide transport system permease protein (TC 3.A.1.5.1) K15587 nikD; nickel transport system ATP-binding protein [EC:7.2.2.11]
D DAQ1742_01591 nikE; Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3) K10824 nikE; nickel transport system ATP-binding protein [EC:7.2.2.11]
D DAQ1742_00204 gsiB; glutathione transport system substrate-binding protein; GsiABCD is an ABC transporter system K13889 gsiB; glutathione transport system substrate-binding protein
D DAQ1742_00203 gsiC; glutathione transport system permease protein; GsiABCD is an ABC transporter system K13890 gsiC; glutathione transport system permease protein
D DAQ1742_00202 gsiD; Glutathione ABC transporter permease; GsiABCD is an ABC transporter system K13891 gsiD; glutathione transport system permease protein
D DAQ1742_00205 gsiA; glutathione transport system ATP-binding protein; GsiABCD is an ABC transporter system K13892 gsiA; glutathione transport system ATP-binding protein
D DAQ1742_01736 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_02583 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_04407 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_01819 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_02426 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_00185 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_00548 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_01573 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_00465 ophA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DAQ1742_01737 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_02586 Dipeptide transport system permease protein; putative hemin permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_04408 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_01820 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_02424 Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_00186 ddpB; Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_00547 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_01576 Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_00466 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DAQ1742_01738 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_02585 Dipeptide transport system permease protein, DppC-like K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_04409 Dipeptide transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_02423 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_00187 ddpC; Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_00546 Predicted dipeptide transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_01577 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_00467 Nucleoside ABC transporter, permease protein 1 K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D DAQ1742_02584 Methionine ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_01816 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_02422 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_04410 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_00188 ddpD; Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_00545 Predicted dipeptide transport ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_01578 Putative glutathione transporter, ATP-binding component K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_00468 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_01740 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DAQ1742_01817 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DAQ1742_01988 yejA; Microcin C transporter YejABEF, periplasmic binding protein; ABC family; regulated by rydC sRNA K13893 yejA; microcin C transport system substrate-binding protein
D DAQ1742_01987 yejB; Microcin C transporter YejABEF, permease subunit; ABC family; regulated by rydC sRNA K13894 yejB; microcin C transport system permease protein
D DAQ1742_01986 yejE; Microcin C transporter YejABEF, permease subunit; ABC family; regulated by rydC sRNA K13895 yejE; microcin C transport system permease protein
D DAQ1742_01985 yejF; Microcin C transporter YejABEF, ATP-binding subunit; ABC family; regulated by rydC sRNA K13896 yejF; microcin C transport system ATP-binding protein
D DAQ1742_01270 cbuB; Periplasmic component of chrysobactin ABC transporter K23185 fepB; ferric enterobactin transport system substrate-binding protein
D DAQ1742_01268 cbuD; Ferric chrysobactin permease component K23186 fepD; iron-siderophore transport system permease protein
D DAQ1742_01267 cbuG; Ferric chrysobactin permease component K23187 fepG; iron-siderophore transport system permease protein
D DAQ1742_01265 cbuC; ATP binding component of ferric chrysobactin ABC transporter K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D DAQ1742_01517 cbrA; Siderophore achromobactin ABC transporter, substrate-binding protein K25109 sirA; iron-siderophore transport system substrate-binding protein
D DAQ1742_01518 cbrB; Siderophore achromobactin ABC transporter, permease protein K25110 sirB; iron-siderophore transport system permease protein
D DAQ1742_01519 cbrC; Siderophore achromobactin ABC transporter, permease protein K25111 sirC; iron-siderophore transport system permease protein
D DAQ1742_01520 cbrD; Siderophore achromobactin ABC transporter, ATPase component K25130 fecE; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D DAQ1742_03089 Periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D DAQ1742_01084 Putative periplasmic substrate-binding transport protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D DAQ1742_01087 Solute-binding periplasmic protein of iron/siderophore ABC transporter K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D DAQ1742_00573 ABC transporter (iron.B12.siderophore.hemin), periplasmic substrate-binding component K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D DAQ1742_01086 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) K02015 ABC.FEV.P; iron complex transport system permease protein
D DAQ1742_00574 ABC transporter (iron.B12.siderophore.hemin), permease component K02015 ABC.FEV.P; iron complex transport system permease protein
D DAQ1742_01085 Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3) K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D DAQ1742_00572 hmuV; Hemin import ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D DAQ1742_01020 btuF; Vitamin B12 ABC transporter, B12-binding component BtuF K06858 btuF; vitamin B12 transport system substrate-binding protein
D DAQ1742_02805 btuC; Vitamin B12 ABC transporter, permease component BtuC K06073 btuC; vitamin B12 transport system permease protein
D DAQ1742_02803 btuD; Vitamin B12 ABC transporter, ATPase component BtuD K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D DAQ1742_02301 znuA; Zinc ABC transporter, periplasmic-binding protein ZnuA K09815 znuA; zinc transport system substrate-binding protein
D DAQ1742_02303 znuB; Zinc ABC transporter, inner membrane permease protein ZnuB K09816 znuB; zinc transport system permease protein
D DAQ1742_02302 znuC; Zinc ABC transporter, ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D DAQ1742_01822 Substrate-specific component NikM of nickel ECF transporter K02007 cbiM; cobalt/nickel transport system permease protein
D DAQ1742_01824 ATPase component NikO of energizing module of nickel ECF transporter K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D DAQ1742_01821 Additional periplasmic component NikK of nickel ECF transporter K10094 cbiK; nickel transport protein
D DAQ1742_01823 Additional component NikL of nickel ECF transporter K16915 cbiL; nickel transport protein
D DAQ1742_03772 znuA; periplasmic zinc binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D DAQ1742_03771 znuB; Zinc ABC transporter, inner membrane permease protein ZnuB K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D DAQ1742_03770 znuC; Zinc ABC transporter, ATP-binding protein ZnuC K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D DAQ1742_00758 O-antigen export system permease protein RfbD K09690 wzm; homopolymeric O-antigen transport system permease protein
D DAQ1742_00759 Teichoic acid export ATP-binding protein TagH K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D DAQ1742_00340 Teichoic acid export ATP-binding protein TagH K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D DAQ1742_00496 lptF; Lipopolysaccharide export ABC permease; LptBFGC export complex K07091 lptF; lipopolysaccharide export system permease protein
D DAQ1742_00497 lptG; Lipopolysaccharide export ABC permease; LptBFGC export complex K11720 lptG; lipopolysaccharide export system permease protein
D DAQ1742_00381 lptB; Lipopolysaccharide ABC transporter, ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D DAQ1742_02809 lolE; Lipoprotein releasing system transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D DAQ1742_02811 lolC; Lipoprotein releasing system transmembrane protein LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D DAQ1742_02810 lolD; Lipoprotein releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D DAQ1742_00115 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D DAQ1742_00114 ftsE; Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) K09812 ftsE; cell division transport system ATP-binding protein
D DAQ1742_01003 yadH; ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D DAQ1742_01002 yadG; ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D DAQ1742_03093 ybbP; Predicted ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D DAQ1742_00196 ABC transporter permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D DAQ1742_04335 vfmF; ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D DAQ1742_03094 ybbA; Uncharacterized metabolite ABC transporter in Enterobacteriaceae, ATP-binding protein EC-YbbA K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D DAQ1742_00195 lolD; ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D DAQ1742_02195 yfeH; Predicted inorganic ion transporter; required for swarming phenotype; regulated by YfeR K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D DAQ1742_02737 mdtK; Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps K26939 norM; MATE family, multidrug efflux pump
D DAQ1742_03397 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps K26937 dinF; MATE family, multidrug efflux pump
D DAQ1742_01424 yeeO; Predicted multdrug exporter, MATE family, controlled by KdgR K26937 dinF; MATE family, multidrug efflux pump
D DAQ1742_03408 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps K26937 dinF; MATE family, multidrug efflux pump
D DAQ1742_01544 rafB; Raffinose-Lactose permease K02532 lacY; MFS transporter, OHS family, lactose permease
D DAQ1742_01994 sotA; Sugar efflux transporter B K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter
D DAQ1742_03509 kgtP; Alpha-ketoglutarate permease K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D DAQ1742_03889 L-Proline/Glycine betaine transporter ProP K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D DAQ1742_01977 oxlT; Oxalate/formate antiporter. Putative antiporter, pyruvate-inducible; inner membrane protein K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D DAQ1742_03559 gudP; D-glucarate permease K03535 gudP; MFS transporter, ACS family, glucarate transporter
D DAQ1742_02818 Hexuronate transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D DAQ1742_00612 exuT; Hexuronate transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D DAQ1742_00127 ttuB; Putative tartrate transporter K13021 ttuB; MFS transporter, ACS family, tartrate transporter
D DAQ1742_02563 4-hydroxybenzoate transporter K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter
D DAQ1742_01732 cynX; Cyanate transport protein CynX K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D DAQ1742_01080 hcaT; Probable 3-phenylpropionic acid transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D DAQ1742_00625 uhpT; Hexose phosphate transport protein UhpT K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D DAQ1742_04185 glpT; Glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D DAQ1742_00624 uhpC; sensor for external glucose-6-phosphate and transport of glucose-6-phosphate K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D DAQ1742_02527 narK; Nitrate/nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D DAQ1742_03629 lplT; Lysophospholipid transporter LplT K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D DAQ1742_01269 cbsS; Transporter for chrysobactin excretion K08225 entS; MFS transporter, ENTS family, enterobactin (siderophore) exporter
D DAQ1742_03217 ampG; muropeptide transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D DAQ1742_01983 bcr; MFS family multidrug transport protein, bicyclomycin resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D DAQ1742_02004 sotB; Sugar efflux transporter SotB K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein
D DAQ1742_00890 mdtG; Multidrug-efflux transporter, major facilitator superfamily (MFS) (TC 2.A.1) K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein
D DAQ1742_02324 mdtH; predicted drug efflux system K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein
D DAQ1742_04256 Putative transport protein K08152 lmrP; MFS transporter, DHA1 family, multidrug resistance protein B
D DAQ1742_03499 emrB; Inner membrane component of tripartite multidrug resistance system K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D DAQ1742_01584 emrB; Inner membrane component of tripartite multidrug resistance system K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D DAQ1742_00783 mfbB; Multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D DAQ1742_00534 Putative transport protein K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein
D DAQ1742_01130 mdtD; Multidrug transporter MdtD K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D DAQ1742_04432 Fosmidomycin resistance protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D DAQ1742_02189 ynfM; Putative arabinose efflux transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D DAQ1742_01528 Permeases of the major facilitator superfamily K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D DAQ1742_02076 ycaD; Hypothetical MFS-type transporter protein YcaD K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D DAQ1742_03925 tsgA; transporter MSF family, tellurite-inducible, function unknown; also induced by selenite K06141 tsgA; MFS transporter, TsgA protein
D DAQ1742_00866 ptsI; Phosphoenolpyruvate-protein phosphotransferase of PTS system K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D DAQ1742_03360 ptsP; Phosphoenolpyruvate-protein phosphotransferase, nitrogen regulation associated K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D DAQ1742_00867 ptsH; Phosphocarrier protein of PTS system K02784 ptsH; phosphocarrier protein HPr
D DAQ1742_00376 npr; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) K08485 ptsO; phosphocarrier protein NPr
D DAQ1742_01995 fruB; Fructose-specific phosphocarrier protein HPr / PTS system, fructose-specific IIA component K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D DAQ1742_00865 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D DAQ1742_02833 ptsG; PTS system, glucose-specific IIB component / PTS system, glucose-specific IIC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D DAQ1742_01192 ganC; part of the galacatan utilization system; unknown function-!-galactan ABC transporter K02778 ptsGb; glucose PTS system EIIB component [EC:2.7.1.199]
D DAQ1742_03015 nagE; PTS system, N-acetylglucosamine-specific IIA component / PTS system, N-acetylglucosamine-specific IIB component / PTS system, N-acetylglucosamine-specific IIC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D DAQ1742_00440 scrA; PTS system, sucrose-specific IIB component / PTS system, sucrose-specific IIC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D DAQ1742_02753 arbF; PTS system, beta-glucoside-specific IIB component / PTS system, beta-glucoside-specific IIC component / PTS system, beta-glucoside-specific IIA component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D DAQ1742_04445 PTS system, beta-glucoside-specific IIB component / PTS system, beta-glucoside-specific IIC component / PTS system, beta-glucoside-specific IIA component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D DAQ1742_01997 fruA; PTS system, fructose-specific IIB component / PTS system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D DAQ1742_03638 celC; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D DAQ1742_03634 celA; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D DAQ1742_03636 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D DAQ1742_00324 manX; PTS system, N-acetylgalactosamine-and galactosamine-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D DAQ1742_00327 agaV; PTS system, N-acetylgalactosamine-specific IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D DAQ1742_00328 PTS system, N-acetylgalactosamine-specific IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D DAQ1742_00329 agaC; PTS system, N-acetylgalactosamine-specific IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D DAQ1742_04086 ulaC; Ascorbate-specific PTS system, EIIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D DAQ1742_04087 ulaA; Ascorbate-specific PTS system, EIIC component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D DAQ1742_02161 sgaT; Putative integral membrane protein, induced in presence of PGA K03475 ulaA; ascorbate PTS system EIIC component
D DAQ1742_00378 ptsN; PTS system nitrogen-specific IIA component, PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D DAQ1742_04301 glpF; Glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator
D DAQ1742_03148 amtB; Ammonium transporter K03320 amt; ammonium transporter, Amt family
D DAQ1742_02517 Uncharacterized glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DAQ1742_02072 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DAQ1742_02131 gst; Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DAQ1742_01657 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DAQ1742_02023 gstB; Uncharacterized glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DAQ1742_02716 gst; Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DAQ1742_01315 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DAQ1742_00401 sspA; Stringent starvation protein A K03599 sspA; stringent starvation protein A
D DAQ1742_01147 yccA; Putative TEGT family carrier/transport protein K19416 yccA; modulator of FtsH protease
D DAQ1742_02079 focA; Formate efflux transporter (TC 2.A.44 family) K06212 focA; formate transporter
D DAQ1742_04024 mscL; Large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D DAQ1742_03139 bspB; Potassium efflux system KefA protein / Small-conductance mechanosensitive channel K05802 mscK; potassium-dependent mechanosensitive channel
D DAQ1742_01233 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel K05802 mscK; potassium-dependent mechanosensitive channel
D DAQ1742_03978 bspA; Potassium efflux system KefA protein / Small-conductance mechanosensitive channel K22051 mscM; miniconductance mechanosensitive channel
D DAQ1742_03919 mscS; Protein involved in stability of MscS mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D DAQ1742_01430 motA; Flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA
D DAQ1742_01431 motB; Flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB
D DAQ1742_01550 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D DAQ1742_00436 exbB; Membrane spanning protein in TonB-ExbB-ExbD complex K03561 exbB; biopolymer transport protein ExbB
D DAQ1742_00437 exbD; Membrane spanning protein in TonB-ExbB-ExbD complex K03559 exbD; biopolymer transport protein ExbD
D DAQ1742_01549 exbD; Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D DAQ1742_02974 tolQ; MotA/TolQ/ExbB proton channel family protein K03562 tolQ; biopolymer transport protein TolQ
D DAQ1742_02973 tolR; Tol biopolymer transport system, TolR protein K03560 tolR; biopolymer transport protein TolR
D DAQ1742_04197 corA; Magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D DAQ1742_02675 ydaN; Zinc transport protein K16074 zntB; zinc transporter
D DAQ1742_03059 crcB; predicted inner membrane protein associated with chromosome condensation K06199 crcB; fluoride exporter
D DAQ1742_03592 ytfL; Putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D DAQ1742_02789 ompF_1; Outer membrane protein F precursor K09476 ompF; outer membrane pore protein F
D DAQ1742_02791 ompF_2; Outer membrane protein F precursor K09476 ompF; outer membrane pore protein F
D DAQ1742_01193 ganL; galactan outer membrane porin K02024 lamB; maltoporin
D DAQ1742_00441 scrY; Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) K16077 scrY; sucrose porin
D DAQ1742_02750 bglH; Outer membrane beta-glucoside porin K10124 bglH; carbohydrate-specific outer membrane porin
D DAQ1742_01135 ompA; Outer membrane protein A precursor K03286 TC.OOP; OmpA-OmpF porin, OOP family
D DAQ1742_01730 ompX; Attachment invasion locus protein precursor K11934 ompX; outer membrane protein X
D DAQ1742_01299 fadL; Long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein
D DAQ1742_03799 tsx; Nucleoside-specific channel-forming protein Tsx precursor K05517 tsx; nucleoside-specific channel-forming protein
D DAQ1742_00920 fimD; type 1 fimbriae anchoring protein FimD K07347 fimD; outer membrane usher protein
D DAQ1742_04280 btuB; Outer membrane vitamin B12 receptor BtuB K16092 btuB; vitamin B12 transporter
D DAQ1742_00721 Outer membrane ferripyoverdine receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D DAQ1742_03090 Ferrichrome-iron receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DAQ1742_01510 acr; Outer membrane receptor proteins, Ferric achromobactin receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DAQ1742_01553 sftP; TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DAQ1742_01260 fct; Ferrichrome-iron receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DAQ1742_02174 prtF; ABC-type protease exporter, outer membrane component PrtF/AprF K12538 hasF; outer membrane protein, type I secretion system
D DAQ1742_00417 tolC; Type I secretion outer membrane transport channel K12340 tolC; outer membrane protein
D DAQ1742_00197 Outer membrane efflux family protein K12340 tolC; outer membrane protein
D DAQ1742_03317 bamA; Beta-barrel assembly machine. Outer membrane protein required for OM biogenesis; in BamABCDE complex K07277 SAM50; outer membrane protein insertion porin family
D DAQ1742_01111 yfgL; Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) K17713 bamB; outer membrane protein assembly factor BamB
D DAQ1742_03069 bamC; Beta-barrel assembly machine Lipoprotein K07287 bamC; outer membrane protein assembly factor BamC
D DAQ1742_00974 bamD; Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) K05807 bamD; outer membrane protein assembly factor BamD
D DAQ1742_00839 bamE; Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex K06186 bamE; outer membrane protein assembly factor BamE
D DAQ1742_03590 tamA; Translocation and assembly module for autotransporter export; outer membrane subunit K07278 tamA; translocation and assembly module TamA
D DAQ1742_03589 tamB; Translocation and assembly module for autotransporter export; inner membrane subunit K09800 tamB; translocation and assembly module TamB
D DAQ1742_02233 kdgN; oligogalacturonate specific porin K22110 kdgM; oligogalacturonate-specific porin family protein
D DAQ1742_02464 kdgM; oligogalacturonate specific porin K22110 kdgM; oligogalacturonate-specific porin family protein
D DAQ1742_00382 lptA; LptA, protein essential for LPS transport across the periplasm K09774 lptA; lipopolysaccharide export system protein LptA
D DAQ1742_00383 lptC; LPS export, IM-tethered periplasmic LPS-binding protein; LptBFGC export complex K11719 lptC; lipopolysaccharide export system protein LptC
D DAQ1742_03857 lptD; Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor K04744 lptD; LPS-assembly protein
D DAQ1742_03044 lptE; Lipopolysaccharide assembly K03643 lptE; LPS-assembly lipoprotein
D DAQ1742_00095 bcsC; Cellulose synthase operon protein C K20543 bcsC; cellulose synthase operon protein C
D DAQ1742_03034 corC; Magnesium and cobalt efflux protein CorC K06189 corC; hemolysin (HlyC) family protein
D DAQ1742_01766 Antiholin-like protein K06518 cidA; holin-like protein
D DAQ1742_01609 yohJ2; Antiholin-like protein K06518 cidA; holin-like protein
D DAQ1742_03546 rhiT; Rhamnogalacturonide transporter RhiT K16210 togT; oligogalacturonide transporter
D DAQ1742_00780 togT; Oligogalacturonide transporter K16210 togT; oligogalacturonide transporter
D DAQ1742_02003 lysP; Lysine-specific permease K11733 lysP; lysine-specific permease
D DAQ1742_03795 aroP; Aromatic amino acid transport protein AroP K11734 aroP; aromatic amino acid transport protein AroP
D DAQ1742_03665 aroP; D-serine/D-alanine/glycine transporter K11734 aroP; aromatic amino acid transport protein AroP
D DAQ1742_03246 proY; Proline-specific permease proY K11736 proY; proline-specific permease ProY
D DAQ1742_01869 cycA; D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter
D DAQ1742_03373 ansP; L-asparagine permease K11738 ansP; L-asparagine permease
D DAQ1742_04072 frlA; Ethanolamine permease K16238 eat; ethanolamine permease
D DAQ1742_00873 yjeH; Putative permease K16263 yjeH; amino acid efflux transporter
D DAQ1742_00165 yiiP; zinc transporter;Relieves iron stress;, ferrous iron efflux pump K13283 fieF; ferrous-iron efflux pump FieF
D DAQ1742_02957 cusA; Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA K07787 cusA; copper/silver efflux system protein
D DAQ1742_03142 acrB; RND efflux system, inner membrane transporter K18138 acrB; multidrug efflux pump
D DAQ1742_01206 RND efflux transporter K21134 triC; multidrug efflux pump
D DAQ1742_00913 RND efflux transporter K21134 triC; multidrug efflux pump
D DAQ1742_01756 smeZ; RND efflux system, inner membrane transporter CmeB K18146 adeB; multidrug efflux pump
D DAQ1742_01132 mdtB; Multidrug transporter MdtB K07788 mdtB; multidrug efflux pump
D DAQ1742_01131 mdtC; Multidrug transporter MdtC K07789 mdtC; multidrug efflux pump
D DAQ1742_03028 emrE; Ethidium bromide-methyl viologen resistance protein EmrE K03297 emrE; small multidrug resistance pump
D DAQ1742_03004 Putative membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein
D DAQ1742_04346 pecM; Permease of the drug/metabolite transporter (DMT) superfamily K15269 pecM; probable blue pigment (indigoidine) exporter
D DAQ1742_01729 rhtA; Putative DMT superfamily metabolite efflux protein precursor K11939 rhtA; inner membrane transporter RhtA
D DAQ1742_04194 rarD; Predicted chloramphenicol resistance permease K05786 rarD; chloramphenicol-sensitive protein RarD
D DAQ1742_04453 pmrL; Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D DAQ1742_04171 gntT; High-affinity gluconate transporter GntT K06155 gntT; Gnt-I system high-affinity gluconate transporter
D DAQ1742_00591 dcuA; C4-dicarboxylate transporter DcuA K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D DAQ1742_01503 dcuB; C4-dicarboxylate transporter DcuB K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D DAQ1742_02591 chaA; Calcium/proton antiporter K07300 chaA; Ca2+:H+ antiporter
D DAQ1742_00386 yrbG; Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter K07301 yrbG; cation:H+ antiporter
D DAQ1742_00063 pitA; Low-affinity inorganic phosphate transporter K16322 pit; low-affinity inorganic phosphate transporter
D DAQ1742_00345 panF; Pantothenate:Na+ symporter (TC 2.A.21.1.1) K14392 panF; sodium/pantothenate symporter
D DAQ1742_04258 putP; Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter K11928 putP; sodium/proline symporter
D DAQ1742_00772 actP; Acetate permease ActP (cation/acetate symporter) K14393 actP; cation/acetate symporter
D DAQ1742_01500 gltP_1; Proton/glutamate symport protein @ Proton/aspartate symport protein K11102 gltP; proton glutamate symport protein
D DAQ1742_00099 dctA; Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate K11103 dctA; aerobic C4-dicarboxylate transport protein
D DAQ1742_03883 nhaA; Na+/H+ antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D DAQ1742_00771 ycjE; Putative Na(+)/H(+) exchanger protein, CPA1 family precursor K24163 nhaK; monovalent cation/hydrogen antiporter
D DAQ1742_04075 kefB; Glutathione-regulated potassium-efflux system protein KefB K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D DAQ1742_04076 kefG; Glutathione-regulated potassium-efflux system ancillary protein KefG K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D DAQ1742_03126 ybaL; monovalent cation:H+ antiporter-2, CPA2 family K26735 KEA4_5_6; K+:H+ antiporter
D DAQ1742_00270 trkH; Potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein
D DAQ1742_04023 trkA; Trk system potassium uptake protein TrkA K03499 trkA; trk/ktr system potassium uptake protein
D DAQ1742_00858 codB; Cytosine permease K10974 codB; cytosine permease
D DAQ1742_03076 uraA; Uracil permease K02824 uraA; uracil permease
D DAQ1742_00036 yicE; Xanthine permease K16345 xanP; xanthine permease XanP
D DAQ1742_04463 purP; Xanthine/uracil/thiamine/ascorbate permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D DAQ1742_00769 ghxQ; Guanine-hypoxanthine permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D DAQ1742_01134 nupC; Na+ dependent nucleoside transporter NupC K11535 nupC; nucleoside transport protein
D DAQ1742_01161 sdaC; Serine transporter K03837 sdaC; serine transporter
D DAQ1742_02582 Chloride channel protein K03281 clcA; chloride channel protein, CIC family
D DAQ1742_02307 hoxN; HoxN/HupN/NixA family nickel/cobalt transporter K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D DAQ1742_02592 dauA; predicted sulphate anion transporter, C4-dicarboxylic acid transporter at low pH. DauA is a C4-dicarboxylic acid transporter with a STAS domain that may be a dicarboxylic acid sensor; DauA is primarily responsible for succinate and fumarate transport at pH 5 K03321 TC.SULP; sulfate permease, SulP family
D DAQ1742_00843 mntH; Manganese transport protein MntH K03322 mntH; manganese transport protein
D DAQ1742_03997 yjbB; Sodium-dependent phosphate transporter K03324 yjbB; phosphate:Na+ symporter
D DAQ1742_04239 wzxE; lipid III translocase K16693 wzxE; enterobacterial common antigen flippase
D DAQ1742_02321 murJ; Probable peptidoglycan lipid II flippase;predicted inner membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D DAQ1742_00143 Putative auxin efflux carrier K13936 mdcF; malonate transporter and related proteins
D DAQ1742_02179 Kup system potassium uptake protein K03549 kup; KUP system potassium uptake protein
D DAQ1742_00005 trkD; Potassium uptake protein K03549 kup; KUP system potassium uptake protein
D DAQ1742_00531 argO; arginine transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D DAQ1742_00751 Putative lysine efflux protein K06895 lysE; L-lysine exporter family protein LysE/ArgO
D DAQ1742_04189 rhtB; Homoserine/homoserine lactone efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D DAQ1742_00369 Homoserine/homoserine lactone efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D DAQ1742_00169 Threonine efflux protein K05835 rhtC; threonine efflux protein
D DAQ1742_03868 Threonine efflux protein K05835 rhtC; threonine efflux protein
D DAQ1742_03495 ygaZ; Probable L-valine exporter. In E. coli the ygaZH mutants are hypersensitive to norvaline K26605 azlC; branched chain amino acid efflux pump
D DAQ1742_03496 ygaH; Probable L-valine exporter. In E. coli the ygaZH mutants are hypersensitive to norvaline K26606 azlD; branched chain amino acid efflux pump
D DAQ1742_00366 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB
D DAQ1742_00107 yhhQ; Putative preQ0 transporter K09125 yhhQ; queuosine precursor transporter
D DAQ1742_00897 Putative preQ0 transporter K09125 yhhQ; queuosine precursor transporter
D DAQ1742_03819 ftsW; Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D DAQ1742_02450 mntP; Probable Mn(2+) efflux pump, mntR-regulated K23242 mntP; manganese efflux pump family protein
D DAQ1742_01751 efeU; Ferrous iron transport permease EfeU K07243 FTR; high-affinity iron transporter
D DAQ1742_01752 efeO; Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain K07224 efeO; iron uptake system component EfeO
D DAQ1742_01753 efeB; Ferrous iron transport peroxidase EfeB K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D DAQ1742_04350 rcnA; Nickel/cobalt efflux transporter RcnA K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D DAQ1742_01082 putative membrane protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D DAQ1742_00929 cstA; Carbon starvation protein A CstA: carbon starvation protein involved in peptide utilization,peptide transport K23676 btsT; pyruvate/proton symporter
D DAQ1742_02239 Ferric siderophore transport system, periplasmic binding protein K03832 tonB; periplasmic protein TonB
D DAQ1742_01551 tonB; Ferric siderophore transport system, periplasmic binding protein TonB K03832 tonB; periplasmic protein TonB
D DAQ1742_00850 Ferric siderophore transport system, periplasmic binding protein TonB K03832 tonB; periplasmic protein TonB
D DAQ1742_02970 pal; peptidoglycan-associated outer membrane lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D DAQ1742_02972 tolA; TolA protein K03646 tolA; colicin import membrane protein
D DAQ1742_02971 tolB; tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins K03641 tolB; TolB protein
D DAQ1742_02524 narG; Respiratory nitrate reductase alpha chain K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D DAQ1742_02523 narH; Respiratory nitrate reductase beta chain K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D DAQ1742_02521 narI; Respiratory nitrate reductase gamma chain K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D DAQ1742_01538 fdnG; Formate dehydrogenase N alpha subunit K08348 fdnG; formate dehydrogenase-N, alpha subunit [EC:1.17.5.3]
D DAQ1742_01540 fdnI; formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible K08350 fdnI; formate dehydrogenase-N, gamma subunit
D DAQ1742_00904 Anaerobic dimethyl sulfoxide reductase chain A K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
D DAQ1742_03498 emrA; Membrane fusion component of tripartite multidrug resistance system K03543 emrA; membrane fusion protein, multidrug efflux system
D DAQ1742_00784 mfbA; Multidrug resistance protein [function not yet clear] K03543 emrA; membrane fusion protein, multidrug efflux system
D DAQ1742_01583 emrA; Membrane fusion component of tripartite multidrug resistance system K03543 emrA; membrane fusion protein, multidrug efflux system
D DAQ1742_02173 prtE; ABC-type protease exporter, membrane fusion protein (MFP) family component PrtE/AprE K12537 hasE; membrane fusion protein, type I secretion system
D DAQ1742_02956 cusB; Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family K07798 cusB; membrane fusion protein, copper/silver efflux system
D DAQ1742_01060 HlyD family secretion protein K12542 lapC; membrane fusion protein, adhesin transport system
D DAQ1742_03141 acrA; Acriflavin resistance protein A; Probable RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D DAQ1742_03972 Membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D DAQ1742_02945 acrZ; AcrAB-TolC efflux pump accessory protein, membrane-associated K25859 acrZ; accessory protein, multidrug efflux pump
D DAQ1742_01203 RND efflux membrane fusion protein K21136 triA; membrane fusion protein, multidrug efflux system
D DAQ1742_00912 Probable Co/Zn/Cd efflux system membrane fusion protein K21136 triA; membrane fusion protein, multidrug efflux system
D DAQ1742_01204 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family K21137 triB; membrane fusion protein, multidrug efflux system
D DAQ1742_00370 Efflux transporter, RND family, MFP subunit, AcrA/E family K21137 triB; membrane fusion protein, multidrug efflux system
D DAQ1742_01757 smeY; Membrane fusion protein of RND family multidrug efflux pump K18145 adeA; membrane fusion protein, multidrug efflux system
D DAQ1742_01133 mdtA; Multidrug efflux system, subunit A K07799 mdtA; membrane fusion protein, multidrug efflux system
D DAQ1742_00862 macA; Macrolide-specific efflux protein MacA K13888 macA; membrane fusion protein, macrolide-specific efflux system
D DAQ1742_00365 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA K15548 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA
D DAQ1742_02962 pnuC; Ribosyl nicotinamide transporter, PnuC-like K03811 pnuC; nicotinamide mononucleotide transporter
D DAQ1742_02498 feoA; Ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D DAQ1742_02499 FIG00614052: hypothetical protein K04758 feoA; ferrous iron transport protein A
D DAQ1742_02497 feoB; Ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D DAQ1742_02397 sbmA; microcin B17 transporter, affects sensitivity to Bac7 antimicrobial peptides K17938 sbmA; peptide/bleomycin uptake transporter
D DAQ1742_00064 uspB; Universal stress protein B K06144 uspB; universal stress protein B
D DAQ1742_03627 ecnA; Lipoprotein antitoxin to bacteriolytic lipoprotein entericidin B (ecnB) toxin K16347 ecnA; entericidin A
D DAQ1742_01772 mgtC; Mg(2+) transport ATPase protein C K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D DAQ1742_02286 Copper resistance protein D K07245 pcoD; copper resistance protein D
D DAQ1742_02287 yobA; Copper resistance protein C precursor K07156 copC; copper resistance protein C
D DAQ1742_01815 Copper resistance protein C precursor K07156 copC; copper resistance protein C
D DAQ1742_00908 Outer membrane protein V K07274 mipA; MipA family protein
C 02044 Secretion system [BR:daq02044]
D DAQ1742_00417 tolC; Type I secretion outer membrane transport channel K12340 tolC; outer membrane protein
D DAQ1742_00197 Outer membrane efflux family protein K12340 tolC; outer membrane protein
D DAQ1742_02172 prtD; ABC-type protease exporter, ATP-binding component PrtD/AprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D DAQ1742_02173 prtE; ABC-type protease exporter, membrane fusion protein (MFP) family component PrtE/AprE K12537 hasE; membrane fusion protein, type I secretion system
D DAQ1742_02174 prtF; ABC-type protease exporter, outer membrane component PrtF/AprF K12538 hasF; outer membrane protein, type I secretion system
D DAQ1742_01061 Type I secretion system ATPase, LssB family LapB K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D DAQ1742_01060 HlyD family secretion protein K12542 lapC; membrane fusion protein, adhesin transport system
D DAQ1742_01237 outB; General secretion pathway protein B K02451 gspB; general secretion pathway protein B
D DAQ1742_01240 outC; General secretion pathway protein C K02452 gspC; general secretion pathway protein C
D DAQ1742_01241 outD; General secretion pathway protein D K02453 gspD; general secretion pathway protein D
D DAQ1742_01242 outE; General secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D DAQ1742_01243 outF; General secretion pathway protein F K02455 gspF; general secretion pathway protein F
D DAQ1742_01244 outG; General secretion pathway protein G K02456 gspG; general secretion pathway protein G
D DAQ1742_01245 outH; General secretion pathway protein H K02457 gspH; general secretion pathway protein H
D DAQ1742_01246 outI; General secretion pathway protein I K02458 gspI; general secretion pathway protein I
D DAQ1742_01247 outJ; General secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D DAQ1742_01248 outK; General secretion pathway protein K K02460 gspK; general secretion pathway protein K
D DAQ1742_01249 outL; General secretion pathway protein L K02461 gspL; general secretion pathway protein L
D DAQ1742_01250 outM; General secretion pathway protein M K02462 gspM; general secretion pathway protein M
D DAQ1742_01251 outO; Leader peptidase (Prepilin peptidase) / N-methyltransferase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D DAQ1742_01236 outS; Lipoprotein outS precursor K02465 gspS; general secretion pathway protein S
D DAQ1742_01106 Type IV pilus biogenesis protein K02656 pilF; type IV pilus assembly protein PilF
D DAQ1742_03620 yggR; Predicted pilus retraction ATPase related to GspE/PilT, function unknown. outE, hofB and yggR are paralogs K02669 pilT; twitching motility protein PilT
D DAQ1742_03357 ppdA; Prepilin peptidase dependent protein A precursor K02679 ppdA; prepilin peptidase dependent protein A
D DAQ1742_03356 ppdB; FIG004819: Prepilin peptidase dependent protein B precursor K02680 ppdB; prepilin peptidase dependent protein B
D DAQ1742_03354 FIG004136: Prepilin peptidase dependent protein C precursor K02681 ppdC; prepilin peptidase dependent protein C
D DAQ1742_03802 ppdD; Type IV pilus major pilin subunit K02682 ppdD; prepilin peptidase dependent protein D
D DAQ1742_03803 hofB; Type IV fimbrial assembly, ATPase K02504 hofB; protein transport protein HofB
D DAQ1742_03804 hofC; Type IV fimbrial assembly protein K02505 hofC; protein transport protein HofC
D DAQ1742_04132 Type IV pilus biogenesis protein PilM K12288 hofM; pilus assembly protein HofM
D DAQ1742_04131 hypothetical protein K12289 hofN; pilus assembly protein HofN
D DAQ1742_04128 hofQ; Required for the utilization of DNA as a carbon source. Competence protein ComE homolog K02507 hofQ; protein transport protein HofQ
D DAQ1742_03623 yggT; Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) K02221 yggT; YggT family protein
D DAQ1742_03156 ybaV; periplasmic protein associated with repression of competence K02237 comEA; competence protein ComEA
D DAQ1742_02113 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D DAQ1742_02371 hrcC; Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) K03219 yscC; type III secretion protein C
D DAQ1742_02388 hrpQ; type III secretion protein HrpQ K03220 yscD; type III secretion protein D
D DAQ1742_02379 hrcJ; Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) K03222 yscJ; type III secretion protein J
D DAQ1742_02377 hrpE; Type III secretion system ATPase associated subunit HrpE K03223 yscL; type III secretion protein L
D DAQ1742_02389 hrcN; Type III secretion cytoplasmic ATP synthase, YscN,SpaL,MxiB,HrcN,EscN) K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D DAQ1742_02392 hrcQ; type III secretion protein HrcQb K03225 yscQ; type III secretion protein Q
D DAQ1742_02393 hrcR; Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) K03226 yscR; type III secretion protein R
D DAQ1742_02394 hrcS; Type III secretion inner membrane protein (YscS,homologous to flagellar export components) K03227 yscS; type III secretion protein S
D DAQ1742_02395 hrcT; Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) K03228 yscT; type III secretion protein T
D DAQ1742_02396 hrcU; Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) K03229 yscU; type III secretion protein U
D DAQ1742_02387 hrcV; Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) K03230 yscV; type III secretion protein V
D DAQ1742_02386 hrpJ; type III secretion protein HrpJ K04058 yscW; type III secretion protein W
D DAQ1742_01440 flhA; Flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D DAQ1742_01439 flhB; Flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D DAQ1742_02900 fliF; Flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D DAQ1742_02902 fliH; Flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D DAQ1742_02903 fliI; Flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D DAQ1742_02908 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D DAQ1742_02909 fliQ; Flagellar biosynthesis protein FliQ K02418 fliO; flagellar protein FliO/FliZ
D DAQ1742_02910 fliP; Flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D DAQ1742_02911 fliQ; Flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D DAQ1742_02912 fliR; Flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D DAQ1742_00747 dsbC; Thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D DAQ1742_00917 fimA; type 1 fimbriae major subunit FimA K07345 fimA; major type 1 subunit fimbrin (pilin)
D DAQ1742_00919 fimC; chaperone FimC K07346 fimC; fimbrial chaperone protein
D DAQ1742_00920 fimD; type 1 fimbriae anchoring protein FimD K07347 fimD; outer membrane usher protein
D DAQ1742_00921 fimF; type 1 fimbrae adaptor subunit FimF K07348 fimF; minor fimbrial subunit
D DAQ1742_00922 fimG; type 1 fimbrae adaptor subunit FimG K07349 fimG; minor fimbrial subunit
D DAQ1742_00923 fimH; mannose-specific adhesin FimH K07350 fimH; minor fimbrial subunit
D DAQ1742_03809 secA; Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DAQ1742_00238 secB; Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) K03071 secB; preprotein translocase subunit SecB
D DAQ1742_03239 secD; Protein-export membrane protein SecD (TC 3.A.5.1.1) K03072 secD; preprotein translocase subunit SecD
D DAQ1742_00285 secE; Preprotein translocase subunit SecE (TC 3.A.5.1.1) K03073 secE; preprotein translocase subunit SecE
D DAQ1742_03238 secF; Protein-export membrane protein SecF (TC 3.A.5.1.1) K03074 secF; preprotein translocase subunit SecF
D DAQ1742_00692 secG; Preprotein translocase subunit SecG (TC 3.A.5.1.1) K03075 secG; preprotein translocase subunit SecG
D DAQ1742_03810 secM; regulator of secA translation K13301 secM; secretion monitor
D DAQ1742_04032 secY; Preprotein translocase secY subunit (TC 3.A.5.1.1) K03076 secY; preprotein translocase subunit SecY
D DAQ1742_00963 ffh; Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D DAQ1742_00113 ftsY; Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) K03110 ftsY; fused signal recognition particle receptor
D DAQ1742_03240 yajC; Preprotein translocase subunit YajC (TC 3.A.5.1.1) K03210 yajC; preprotein translocase subunit YajC
D DAQ1742_04441 yidC; Inner membrane protein translocase component YidC, long form K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DAQ1742_00257 tatA; Twin-arginine translocation protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D DAQ1742_00258 tatB; Twin-arginine translocation protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D DAQ1742_00259 tatC; Twin-arginine translocation protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D DAQ1742_03056 tatE; Twin-arginine translocation protein TatE K03425 tatE; sec-independent protein translocase protein TatE
C 02042 Bacterial toxins [BR:daq02042]
D DAQ1742_03592 ytfL; Putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D DAQ1742_00740 yqfA; predicted oxidoreductase, inner membrane subunit K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:daq02022]
D DAQ1742_03252 phoR; Phosphate regulon sensor protein PhoR (SphS) K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D DAQ1742_03254 phoB; Phosphate regulon transcriptional regulatory protein PhoB (SphR) K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D DAQ1742_02492 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D DAQ1742_02491 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D DAQ1742_04141 envZ; Osmolarity sensory histidine kinase EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D DAQ1742_04142 ompR; Two-component system response regulator OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D DAQ1742_02595 rstB; Sensory histidine kinase in two-component regulatory system with RstA K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D DAQ1742_02594 rstA; DNA-binding response regulator in two-component regulatory system with RstB K07661 rstA; two-component system, OmpR family, response regulator RstA
D DAQ1742_00151 cpxA; Copper sensory histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D DAQ1742_00152 cpxR; Copper-sensing two-component system response regulator CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D DAQ1742_01129 baeS; Sensory histidine kinase BaeS K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D DAQ1742_01128 baeR; Response regulator BaeR K07664 baeR; two-component system, OmpR family, response regulator BaeR
D DAQ1742_04065 pmrB; Sensor protein basS/pmrB K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D DAQ1742_04064 pmrA; Transcriptional regulatory protein basR/pmrA K07771 basR; two-component system, OmpR family, response regulator BasR
D DAQ1742_03002 kdpD; Osmosensitive K+ channel histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D DAQ1742_03003 kdpE; sensor histidine kinase K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D DAQ1742_00406 arcB; Aerobic respiration control sensor protein arcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D DAQ1742_03902 arcA; Aerobic respiration control protein arcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D DAQ1742_01759 Signal transduction histidine kinase K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3]
D DAQ1742_01758 Two-component response regulator K18144 adeR; two-component system, OmpR family, response regulator AdeR
D DAQ1742_00864 Putative two-component system sensor kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D DAQ1742_00863 Putative two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D DAQ1742_02528 narX; Nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D DAQ1742_02529 narL; Nitrate/nitrite response regulator protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D DAQ1742_00623 uhpB; Sensor histidine protein kinase UhpB, glucose-6-phosphate specific K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D DAQ1742_00622 uhpA; DNA-binding response regulator in two-component regulatory system wtih UhpB K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D DAQ1742_03111 rcsC; Two-component sensor protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D DAQ1742_03109 rcsD; Two-component sensor protein RcsD K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D DAQ1742_03110 rcsB; DNA-binding capsular synthesis response regulator RcsB K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D DAQ1742_03553 gacS; BarA sensory histidine kinase (= VarS = GacS) K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D DAQ1742_01872 gacA; Response regulator of the two-component transcriptional regulatory system UvrY-BarA (ExpA-ExpS, GacA-GacS) K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D DAQ1742_02096 citA; Sensor kinase CitA K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D DAQ1742_02095 citB; Transcriptional regulatory protein CitB, DpiA K07702 dpiA; two-component system, CitB family, response regulator CitB
D DAQ1742_00081 dcuS; Fumarate respiration sensor kinase protein DcuS K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3]
D DAQ1742_00082 dcuR; Fumarate respiration transcriptional regulator DcuR K07703 dcuR; two-component system, CitB family, response regulator DcuR
D DAQ1742_01975 ypdA; putative sensor protein, responsive to pyruvate K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D DAQ1742_04162 yehU; predicted sensory kinase in two-component system with YehT, Stationary phase sensor kinase regulating yjiY, The YpdAB and YehTU two-component regulators are paralogous K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D DAQ1742_00927 yehU; predicted sensory kinase in two-component system with YehT, Stationary phase sensor kinase regulating yjiY, The YpdAB and YehTU two-component regulators are paralogous K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D DAQ1742_01976 ypdB; Hypothetical response regulatory protein ypdB, responsive to pyruvate K02477 K02477; two-component system, LytTR family, response regulator
D DAQ1742_00928 yehT; predicted response regulator in two-component system withYehU K02477 K02477; two-component system, LytTR family, response regulator
D DAQ1742_00028 glnL; Nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D DAQ1742_00027 glnG; Nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D DAQ1742_01070 qseE; Putative sensor-like histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D DAQ1742_01072 qseF; DNA-binding response regulator in two-component system binds glmY promoter, glmY is a sRNA controling glmS involved in the synthesis of bacterial cell wall precursor K07715 glrR; two-component system, NtrC family, response regulator GlrR
D DAQ1742_01432 cheA; Signal transduction histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DAQ1742_01437 cheY; Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D DAQ1742_01436 cheB; Chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D DAQ1742_01581 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D DAQ1742_02259 rssB; response regulator of RpoS K02485 rssB; two-component system, response regulator
C 02035 Bacterial motility proteins [BR:daq02035]
D DAQ1742_01432 cheA; Signal transduction histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D DAQ1742_01433 cheW; Positive regulator of CheA protein activity (CheW) K03408 cheW; purine-binding chemotaxis protein CheW
D DAQ1742_01435 cheR; Chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D DAQ1742_01436 cheB; Chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D DAQ1742_01437 cheY; Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D DAQ1742_01438 cheZ; Chemotaxis response-phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ
D DAQ1742_01581 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D DAQ1742_00136 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_01413 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00538 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03783 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03607 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00067 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00130 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00133 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00135 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_00459 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_01391 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02693 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03732 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02016 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02017 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02863 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03011 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03123 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_03261 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D DAQ1742_02241 FIG00613814: hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_01434 cheD; Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_03616 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_03580 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_02134 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_03965 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D DAQ1742_02541 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_04357 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_02403 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_03610 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_02160 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D DAQ1742_03911 chmX; Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D DAQ1742_00568 trg; Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D DAQ1742_01426 Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D DAQ1742_02581 Aerotaxis sensor receptor protein K03776 aer; aerotaxis receptor
D DAQ1742_03563 Aerotaxis sensor receptor protein K03776 aer; aerotaxis receptor
D DAQ1742_02902 fliH; Flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D DAQ1742_02903 fliI; Flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D DAQ1742_02904 fliJ; Flagellar protein FliJ K02413 fliJ; flagellar protein FliJ
D DAQ1742_02909 fliQ; Flagellar biosynthesis protein FliQ K02418 fliO; flagellar protein FliO/FliZ
D DAQ1742_02910 fliP; Flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D DAQ1742_02911 fliQ; Flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D DAQ1742_02912 fliR; Flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D DAQ1742_01440 flhA; Flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D DAQ1742_01439 flhB; Flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D DAQ1742_02901 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D DAQ1742_02907 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D DAQ1742_02908 fliN; Flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D DAQ1742_02900 fliF; Flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D DAQ1742_01451 flgI; Flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D DAQ1742_01443 flgA; Flagellar basal-body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D DAQ1742_01450 flgH; Flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D DAQ1742_02906 fliL; Flagellar biosynthesis protein FliL K02415 fliL; flagellar protein FliL
D DAQ1742_02899 fliE; Flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D DAQ1742_02905 fliK; Flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D DAQ1742_01444 flgB; Flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D DAQ1742_01445 flgC; Flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D DAQ1742_01446 flgD; Flagellar basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D DAQ1742_01448 flgF; Flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D DAQ1742_01449 flgG; Flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D DAQ1742_01452 flgJ; Flagellar protein FlgJ [peptidoglycan hydrolase] K02395 flgJ; peptidoglycan hydrolase FlgJ
D DAQ1742_01447 flgE; Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D DAQ1742_01453 flgK; Flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D DAQ1742_01454 flgL; Flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D DAQ1742_01441 flgN; Flagellar biosynthesis protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D DAQ1742_02895 fliC; Flagellar biosynthesis protein FliC K02406 fliC; flagellin
D DAQ1742_02896 fliD; Flagellar hook-associated protein FliD K02407 fliD; flagellar hook-associated protein 2
D DAQ1742_02897 fliS; Flagellar biosynthesis protein FliS K02422 fliS; flagellar secretion chaperone FliS
D DAQ1742_02898 fliT; Flagellar biosynthesis protein FliT K02423 fliT; flagellar protein FliT
D DAQ1742_01428 flhD; Flagellar transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D DAQ1742_01429 flhC; Flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D DAQ1742_02882 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D DAQ1742_01430 motA; Flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA
D DAQ1742_01431 motB; Flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB
D DAQ1742_00339 fliY; Cystine-binding periplasmic protein precursor K02424 tcyA; L-cystine transport system substrate-binding protein
D DAQ1742_02881 fliZ; Flagellar biosynthesis protein FliZ K02425 fliZ; regulator of sigma S factor FliZ
D DAQ1742_01442 flgM; Negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D DAQ1742_03620 yggR; Predicted pilus retraction ATPase related to GspE/PilT, function unknown. outE, hofB and yggR are paralogs K02669 pilT; twitching motility protein PilT
D DAQ1742_01106 Type IV pilus biogenesis protein K02656 pilF; type IV pilus assembly protein PilF
D DAQ1742_00917 fimA; type 1 fimbriae major subunit FimA K07345 fimA; major type 1 subunit fimbrin (pilin)
D DAQ1742_00919 fimC; chaperone FimC K07346 fimC; fimbrial chaperone protein
D DAQ1742_00920 fimD; type 1 fimbriae anchoring protein FimD K07347 fimD; outer membrane usher protein
D DAQ1742_00921 fimF; type 1 fimbrae adaptor subunit FimF K07348 fimF; minor fimbrial subunit
D DAQ1742_00922 fimG; type 1 fimbrae adaptor subunit FimG K07349 fimG; minor fimbrial subunit
D DAQ1742_00923 fimH; mannose-specific adhesin FimH K07350 fimH; minor fimbrial subunit
D DAQ1742_00918 fimI; type 1 fimbriae protein FimI, unknown function K07351 fimI; fimbrial protein
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:daq04812]
D DAQ1742_00355 mreB; Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D DAQ1742_03813 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D DAQ1742_03814 ftsA; Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D DAQ1742_02433 minC; Septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D DAQ1742_02434 minD; Septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D DAQ1742_02435 minE; Cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
C 04147 Exosome [BR:daq04147]
D DAQ1742_03130 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D DAQ1742_03548 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DAQ1742_02275 gapA; NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DAQ1742_03921 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D DAQ1742_02756 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DAQ1742_02297 pykA; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DAQ1742_04118 ppiA; Peptidyl-prolyl cis-trans isomerase PpiA precursor K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D DAQ1742_00184 Microsomal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D DAQ1742_03245 Alkyl hydroperoxide reductase subunit C-like protein K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D DAQ1742_00595 groL; Heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DAQ1742_03886 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D DAQ1742_03992 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DAQ1742_01116 guaB; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D DAQ1742_04055 tufA; Translation elongation factor Tu K02358 tuf; elongation factor Tu
D DAQ1742_00284 tufB; Translation elongation factor Tu K02358 tuf; elongation factor Tu
D DAQ1742_02831 hinT; purine nucleoside phosphoramidase,HinT is required in E. coli for growth on D-alanine as a sole carbon source. HinT is essential for the activity of the enzyme D-alanine dehydrogenase (DadA) K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D DAQ1742_02195 yfeH; Predicted inorganic ion transporter; required for swarming phenotype; regulated by YfeR K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D DAQ1742_03833 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_02437 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_04390 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_04403 O-succinylbenzoic acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_02886 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DAQ1742_03129 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D DAQ1742_03134 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D DAQ1742_00252 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D DAQ1742_04349 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D DAQ1742_02410 Cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D DAQ1742_04383 dht; Dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D DAQ1742_03937 fbp; Fructose-1,6-bisphosphatase, type I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DAQ1742_02951 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D DAQ1742_04161 glgB; 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D DAQ1742_04302 glpK; Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D DAQ1742_00030 glnA; Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DAQ1742_00261 hemB; Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D DAQ1742_04448 hpd; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D DAQ1742_03913 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DAQ1742_03345 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DAQ1742_00314 purH; IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D DAQ1742_03789 lpd; Dihydrolipoamide dehydrogenase / Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DAQ1742_02295 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D DAQ1742_04308 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DAQ1742_02958 gpmA; Phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DAQ1742_03986 blc; possible role for the outer membrane lipoprotein Blc in membrane repair or maintenance requiring lipid storage or transport K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:daq02048]
D DAQ1742_03729 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D DAQ1742_00452 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D DAQ1742_00453 CRISPR-associated protein, Cas2 K09951 cas2; CRISPR-associated protein Cas2
D DAQ1742_03728 CRISPR-associated helicase Cas3, Yersinia-type K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D DAQ1742_00446 CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D DAQ1742_00447 cse1; CRISPR-associated protein, Cse1 family K19123 casA; CRISPR system Cascade subunit CasA
D DAQ1742_00448 CRISPR-associated protein, Cse2 family K19046 casB; CRISPR system Cascade subunit CasB
D DAQ1742_00449 CRISPR-associated protein, Cse4 family K19124 casC; CRISPR system Cascade subunit CasC
D DAQ1742_00450 CRISPR-associated protein, Cse3 family K19125 casD; CRISPR system Cascade subunit CasD
D DAQ1742_00451 CRISPR-associated protein, Cse3 family K19126 casE; CRISPR system Cascade subunit CasE
D DAQ1742_03671 CRISPR-associated protein, Csy1 family K19127 csy1; CRISPR-associated protein Csy1
D DAQ1742_03670 CRISPR-associated protein, Csy2 family K19128 csy2; CRISPR-associated protein Csy2
D DAQ1742_03669 CRISPR-associated protein, Csy3 family K19129 csy3; CRISPR-associated protein Csy3
D DAQ1742_03668 CRISPR-associated protein, Csy4 family K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
D DAQ1742_00505 Type I restriction-modification system, restriction subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D DAQ1742_01213 Type I restriction-modification system, restriction subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D DAQ1742_00503 Type I restriction-modification system, specificity subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D DAQ1742_01215 Type I restriction-modification system, specificity subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D DAQ1742_00502 Type I restriction-modification system, DNA-methyltransferase subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D DAQ1742_01216 Type I restriction-modification system, DNA-methyltransferase subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D DAQ1742_01910 Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D DAQ1742_04124 dam; Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D DAQ1742_01909 macromolecule metabolism; macromolecule synthesis, modification; dna-replication, repair, restr./modif. K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DAQ1742_02641 Modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DAQ1742_00658 Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal K01156 res; type III restriction enzyme [EC:3.1.21.5]
D DAQ1742_00659 Type III restriction-modification system methylation subunit K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D DAQ1742_00507 Mrr restriction system protein K07448 mrr; restriction system protein
D DAQ1742_02358 Domain of unknown function DUF1813 HSP20-like protein K19048 symE; toxic protein SymE
D DAQ1742_02351 Domain of unknown function DUF1813 HSP20-like protein K19048 symE; toxic protein SymE
D DAQ1742_02361 Domain of unknown function DUF1813 HSP20-like protein K19048 symE; toxic protein SymE
D DAQ1742_03483 FIG00696908: hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D DAQ1742_02689 pspC; Phage shock protein C, regulatory K03973 pspC; phage shock protein C
D DAQ1742_02690 pspB; Phage shock protein B, regulatory K03970 pspB; phage shock protein B
D DAQ1742_01460 CcdA protein (antitoxin to CcdB) K19164 ccdA; antitoxin CcdA
D DAQ1742_00485 tabA; probable beta-D-galactosidase K19334 tabA; biofilm protein TabA
D DAQ1742_02854 bssS; Repressor of biofilm formation by indole transport regulation; In E. coli, BssS increases Mtr expression and indole import; decreases AcrEF expression and indole export. K12148 bssS; biofilm regulator BssS
D DAQ1742_04310 bhsA; multiple stress resistance protein BhsA. influencing Biofilm through Hydrophobicity and Stress response. Putative exported protein precursor. In E. coli, the bhsA mutant phenotype includes sensitivity to acid, heat, hydrogen peroxide, and cadmium, as well as 5-fold increased biofilm in the presence of glucose, increased cell surface hydrophobicity, and increased aggregation K12151 bhsA; multiple stress resistance protein BhsA
D DAQ1742_03658 Putative outer membrane protein K12151 bhsA; multiple stress resistance protein BhsA
D DAQ1742_03813 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D DAQ1742_00355 mreB; Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D DAQ1742_00427 parC; Topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D DAQ1742_00423 parE; Topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D DAQ1742_01035 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DAQ1742_00520 YkfI toxin protein K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
D DAQ1742_00668 YkfI toxin protein K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
D DAQ1742_01229 YpjF toxin protein K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
D DAQ1742_00519 YfjZ protein (antitoxin to YpjF) K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins
D DAQ1742_01227 YfjZ protein (antitoxin to YpjF) K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins
D DAQ1742_00743 cptA; Cytoskeleton Polymerization-inhibiting Toxin. Toxin of CptAB toxin-antitoxin pair (McNeil, 2012). The C-terminal CptA domain binds to and inhibits the polymerization of MreB and FtsZ in vitro K19168 cptA; toxin CptA
D DAQ1742_00742 cptB; antitoxin of CptAB toxin-antitoxin pair. Flavinator of succinate dehydrogenase (McNeil, 2012). SdhE may also facilitate FrdA flavinylation (McNeil, 2013) K09159 cptB; antitoxin CptB
D DAQ1742_01091 iscS; Cysteine desulfurase, IscS subfamily K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:daq01504]
D DAQ1742_03281 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_04320 vfmO; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_04321 vfmP; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D DAQ1742_03282 dltB; D-alanyl transfer protein DltB K03739 dltB; membrane protein involved in D-alanine export
D DAQ1742_03280 dltC; D-alanine carrier protein DltC K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D DAQ1742_03284 dltD; Poly(glycerophosphate chain) D-alanine transfer protein DltD K03740 dltD; D-alanine transfer protein
D DAQ1742_02492 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D DAQ1742_02491 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D DAQ1742_03141 acrA; Acriflavin resistance protein A; Probable RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D DAQ1742_03972 Membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D DAQ1742_03142 acrB; RND efflux system, inner membrane transporter K18138 acrB; multidrug efflux pump
D DAQ1742_03119 cueR; copper responsive transcription regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D DAQ1742_01759 Signal transduction histidine kinase K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3]
D DAQ1742_01758 Two-component response regulator K18144 adeR; two-component system, OmpR family, response regulator AdeR
D DAQ1742_01757 smeY; Membrane fusion protein of RND family multidrug efflux pump K18145 adeA; membrane fusion protein, multidrug efflux system
D DAQ1742_01756 smeZ; RND efflux system, inner membrane transporter CmeB K18146 adeB; multidrug efflux pump
D DAQ1742_00417 tolC; Type I secretion outer membrane transport channel K12340 tolC; outer membrane protein
D DAQ1742_00197 Outer membrane efflux family protein K12340 tolC; outer membrane protein
D DAQ1742_02789 ompF_1; Outer membrane protein F precursor K09476 ompF; outer membrane pore protein F
D DAQ1742_02791 ompF_2; Outer membrane protein F precursor K09476 ompF; outer membrane pore protein F
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:daq00536]
D DAQ1742_02364 hypothetical protein K15125 fhaB; filamentous hemagglutinin
D DAQ1742_02365 hypothetical protein K15125 fhaB; filamentous hemagglutinin
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:daq00537]
D DAQ1742_00184 Microsomal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:daq03100]
D DAQ1742_01038 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DAQ1742_01037 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DAQ1742_00274 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DAQ1742_00317 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DAQ1742_04276 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DAQ1742_00954 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DAQ1742_04232 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DAQ1742_00955 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DAQ1742_00956 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DAQ1742_01296 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DAQ1742_01231 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DAQ1742_01466 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D DAQ1742_01867 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D DAQ1742_02743 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D DAQ1742_00984 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DAQ1742_00991 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DAQ1742_04273 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DAQ1742_01876 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D DAQ1742_03024 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DAQ1742_03025 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DAQ1742_03027 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DAQ1742_00013 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DAQ1742_00979 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DAQ1742_03513 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DAQ1742_04009 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DAQ1742_00752 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DAQ1742_01875 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DAQ1742_03951 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DAQ1742_03953 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DAQ1742_03973 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DAQ1742_00282 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DAQ1742_04231 tRNA-His K14226 tRNA-His; tRNA His
D DAQ1742_00273 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DAQ1742_00316 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DAQ1742_04277 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DAQ1742_01877 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_03023 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_00499 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_00727 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_00728 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_00729 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_04230 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_00693 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DAQ1742_01870 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DAQ1742_01030 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DAQ1742_02966 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DAQ1742_02967 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DAQ1742_02968 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DAQ1742_00670 tRNA-Met K14230 tRNA-Met; tRNA Met
D DAQ1742_00694 tRNA-Met K14230 tRNA-Met; tRNA Met
D DAQ1742_03022 tRNA-Met K14230 tRNA-Met; tRNA Met
D DAQ1742_03026 tRNA-Met K14230 tRNA-Met; tRNA Met
D DAQ1742_03348 tRNA-Met K14230 tRNA-Met; tRNA Met
D DAQ1742_03349 tRNA-Met K14230 tRNA-Met; tRNA Met
D DAQ1742_00587 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D DAQ1742_03377 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D DAQ1742_01971 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DAQ1742_04229 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DAQ1742_00045 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DAQ1742_02330 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DAQ1742_01148 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DAQ1742_00953 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DAQ1742_02874 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DAQ1742_02745 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DAQ1742_00283 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DAQ1742_00280 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DAQ1742_03448 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DAQ1742_00982 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DAQ1742_04272 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D DAQ1742_02264 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D DAQ1742_00281 tRNA-Pseudo-GTA K14236 tRNA-Tyr; tRNA Tyr
D DAQ1742_01031 tRNA-Val K14237 tRNA-Val; tRNA Val
D DAQ1742_02738 tRNA-Val K14237 tRNA-Val; tRNA Val
D DAQ1742_02739 tRNA-Val K14237 tRNA-Val; tRNA Val
D DAQ1742_01032 tRNA-Val K14237 tRNA-Val; tRNA Val
D DAQ1742_01033 tRNA-Val K14237 tRNA-Val; tRNA Val
D DAQ1742_00012 Small Subunit Ribosomal RNA; ssuRNA; SSU ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DAQ1742_03514 Small Subunit Ribosomal RNA; ssuRNA; SSU ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DAQ1742_00318 Large Subunit Ribosomal RNA; lsuRNA; LSU ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DAQ1742_00014 Large Subunit Ribosomal RNA; lsuRNA; LSU ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DAQ1742_00275 Large Subunit Ribosomal RNA; lsuRNA; LSU ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DAQ1742_00015 5S RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D DAQ1742_00430 dkgA; Methylglyoxal reductase, acetol producing / 2,5-diketo-D-gluconate reductase A K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D DAQ1742_03775 4-hydroxythreonine-4-phosphate dehydrogenase K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]
D DAQ1742_02007 ybdH; Glycerol dehydrogenase K08317 hcxA; hydroxycarboxylate dehydrogenase A [EC:1.1.1.-]
D DAQ1742_01313 calB; Aldehyde dehydrogenase; Probable coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D DAQ1742_03286 Predicted dinucleotide-binding enzymes K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D DAQ1742_03655 qor; Quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D DAQ1742_00425 mdaB; Modulator of drug activity B K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D DAQ1742_02601 azoR; FMN-dependent NADH-azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D DAQ1742_00576 ahpF; Alkyl hydroperoxide reductase protein F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D DAQ1742_03591 msrA; Peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D DAQ1742_02274 msrB; Peptide methionine sulfoxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D DAQ1742_01339 yfcG; GSH-dependent disulfide bond oxidoreductase; weak glutathione S-transferase; GSH-dependent peroxidase; hydrogen peroxide resistance K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D DAQ1742_01127 yqjG; S-glutathionyl-(chloro)hydroquinone reductase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D DAQ1742_00606 yqjG; Glutathione S-transferase, omega K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D DAQ1742_00352 yedY; sulfite oxidase,Membrane-anchored, periplasmic TMAO, Mo-MPT form of the molybdenum cofactor; Despite a weak reductase activity with substrates such as dimethyl sulfoxide or trimethylamine N-oxide, its natural substrate and its role in the cell remain unknown K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D DAQ1742_00945 cybB; cytochrome b(561) K12262 cybB; superoxide oxidase [EC:1.10.3.17]
D DAQ1742_03072 bcp; Thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D DAQ1742_02680 tpx; Thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D DAQ1742_00575 ahpC; Alkyl hydroperoxide reductase protein C K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D DAQ1742_03963 ohr; Organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D DAQ1742_01316 ohr; Organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D DAQ1742_00859 yfeX; Porphyrinogen oxidase binds heme and protoporphyrin IX (PPIX). Iron acquisition K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D DAQ1742_04181 yhhW; Qercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D DAQ1742_04254 hypothetical protein K18058 asnO; L-asparagine oxygenase [EC:1.14.11.39]
D DAQ1742_01078 hmpX; Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D DAQ1742_00816 pvdA; L-ornithine 5-monooxygenase K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196]
D DAQ1742_02285 ftnA; Ferritin iron storage protein (cytoplasmic) K02217 ftnA; ferritin [EC:1.16.3.2]
D DAQ1742_02125 cueO; Blue copper oxidase CueO precursor K14588 cueO; cuproxidase [EC:1.16.3.4]
D DAQ1742_04305 fpr; Ferredoxin--NADP(+) reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D DAQ1742_03074 yfgD; Arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D DAQ1742_00462 nrdG; Ribonucleotide reductase of class III (anaerobic), activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D DAQ1742_02077 pflA; Pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D DAQ1742_02053 hcr; NADH oxidoreductase hcr K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D DAQ1742_01494 hyfA; Hydrogenase-4 component A K12136 hyfA; hydrogenase-4 component A [EC:1.-.-.-]
D DAQ1742_01493 hyfB; Hydrogenase-4 component B / Formate hydrogenlyase subunit 3 K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-]
D DAQ1742_01492 hyfC; Hydrogenase-4 component C K12138 hyfC; hydrogenase-4 component C [EC:1.-.-.-]
D DAQ1742_01491 hyfD; Hydrogenase-4 component D K12139 hyfD; hydrogenase-4 component D [EC:1.-.-.-]
D DAQ1742_01490 hyfE; Hydrogenase-4 component E K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D DAQ1742_01489 hyfF; Hydrogenase-4 component F K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D DAQ1742_01488 hyfG; Formate hydrogenlyase subunit 5 K12142 hyfG; hydrogenase-4 component G [EC:1.-.-.-]
D DAQ1742_01486 hyfI; Formate hydrogenlyase subunit 7 K12144 hyfI; hydrogenase-4 component I [EC:1.-.-.-]
D DAQ1742_01485 hyfJ; Hydrogenase-4 maturation protease K12145 hyfJ; hydrogenase-4 component J [EC:1.-.-.-]
D DAQ1742_00566 dltE; Uncharacterized oxidoreductase K14189 dltE; uncharacterized oxidoreductase [EC:1.-.-.-]
D DAQ1742_03526 pcm; Protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D DAQ1742_02734 cfa1; Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D DAQ1742_02153 Cyclopropane-fatty-acyl-phospholipid synthase, plant type K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D DAQ1742_00877 tehB; Tellurite resistance protein TehB K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D DAQ1742_02816 nhoA; putative arylamine N-acetyltransferase, truncation K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118]
D DAQ1742_03035 lnt; Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D DAQ1742_00710 yhbS; FIG002208: Acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D DAQ1742_04374 yiaC; putative acyltransferase with acyl-CoA N-acyltransferase domain K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D DAQ1742_00489 yjgM; Aspartate N-acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D DAQ1742_00492 yedL; GCN5-related N-acetyltransferase K03829 yedL; putative acetyltransferase [EC:2.3.1.-]
D DAQ1742_04226 FIG01201438: hypothetical protein K24117 scmL; S-(2-succino)cysteine N-acetyltransferase [EC:2.3.1.-]
D DAQ1742_02061 aat; Leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D DAQ1742_03506 yfiP; FIG00637884: hypothetical protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D DAQ1742_03359 lgt; Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D DAQ1742_00628 apbE; ApbE is a flavin transferase catalyzing covalent attachment of FMN to a threonine residue in bacterial flavoproteins.An apbE mutant of Salmonella typhimurium is blocked for thiamine biosynthesis at the ThiC step K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D DAQ1742_00630 Hypothetical similar to thiamin biosynthesis lipoprotein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D DAQ1742_03776 Candidate type III effector Hop protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]
D DAQ1742_02767 ppsR; FIG137360: hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D DAQ1742_03571 glnE; Glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D DAQ1742_00174 Retron-type RNA-directed DNA polymerase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D DAQ1742_02798 ydiU; Selenoprotein O and cysteine-containing homologs K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D DAQ1742_04003 aceK; Isocitrate dehydrogenase phosphatase/kinase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D DAQ1742_01261 cbsH; Chrysobactin oligopeptidase CbsH K07214 fes; iron(III)-enterobactin esterase [EC:3.1.1.108]
D DAQ1742_02975 ybgC; 4-hydroxybenzoyl-CoA thioesterase family active site K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D DAQ1742_02226 yciV; COG0613, Predicted metal-dependent phosphoesterases (PHP family) K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D DAQ1742_01304 sixA; Phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D DAQ1742_02814 ycgG; membrane-anchored cyclic-di-GMP phosphodiesterase K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D DAQ1742_03932 nucM; Endonuclease I precursor @ Extracellular deoxyribonuclease Dns K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D DAQ1742_02834 ycfH; Putative deoxyribonuclease YcfH K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D DAQ1742_00563 yjjV; Putative deoxyribonuclease YjjV K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D DAQ1742_00260 tatD; Deoxyribonuclease TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D DAQ1742_03007 ybfF; Esterase ybfF K01175 ybfF; esterase [EC:3.1.-.-]
D DAQ1742_03455 frsA; Fermentation/respiration switch protein K11750 frsA; esterase FrsA [EC:3.1.-.-]
D DAQ1742_00098 celY; Endoglucanase precursor K20542 bcsZ; endoglucanase [EC:3.2.1.4]
D DAQ1742_04251 pehX; Exo-poly-alpha-D-galacturonosidase precursor K18650 pehX; exo-poly-alpha-galacturonosidase [EC:3.2.1.82]
D DAQ1742_01190 ganA; periplasmic 1,4-beta-endogalactanase K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89]
D DAQ1742_03764 lfgN; putative enzyme, RhiN-like K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172]
D DAQ1742_03545 rhiN; Rhamnogalacturonides degradation protein RhiN K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172]
D DAQ1742_04020 def; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D DAQ1742_03057 ybeM; Putative amidase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D DAQ1742_00480 ridA; Enamine/imine deaminase, reaction intermediate detoxification. RidA proteins prevent metabolic damage K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D DAQ1742_03424 Endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D DAQ1742_03572 ygiF; Adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25]
D DAQ1742_00844 nudK; GDP-mannose pyrophosphatase K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-]
D DAQ1742_02848 yceF; FIG146278: Maf/YceF/YhdE family protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D DAQ1742_00004 ravA; AAA+ ATPase of the MoxR family. MoxR ATPases are proposed to have chaperone-like function for the maturation of specific protein complexes or for the insertion of cofactors into proteins K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D DAQ1742_01253 FIG00905119: hypothetical protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D DAQ1742_02162 padC; Phenolic acid decarboxylase K13727 pdc; phenolic acid decarboxylase [EC:4.1.1.-]
D DAQ1742_03949 nnr; NAD(P)HX epimerase / NAD(P)HX dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D DAQ1742_00902 rhiE; rhamnogalacturonate lyase K18195 RGL4; rhamnogalacturonan endolyase [EC:4.2.2.23]
D DAQ1742_02204 rhamnogalacturonate lyase K18195 RGL4; rhamnogalacturonan endolyase [EC:4.2.2.23]
D DAQ1742_03340 csdA; Cysteine desulfurase CsdA-CsdE, main protein CsdA K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D DAQ1742_00539 rhaM; L-rhamnose mutarotase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D DAQ1742_03938 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D DAQ1742_02211 rsxD; Electron transport complex protein RnfD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D DAQ1742_02210 rsxC; Electron transport complex protein RnfC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D DAQ1742_02209 rsxB; Electron transport complex protein RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D DAQ1742_00580 zntA; Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D DAQ1742_01012 sfsA; Sugar/maltose fermentation stimulation protein homolog K06206 sfsA; sugar fermentation stimulation protein A
D DAQ1742_02180 putative cellulase K20628 exlX; expansin
C 99982 Energy metabolism
D DAQ1742_04354 fdhD; Formate dehydrogenase chain D K02379 fdhD; FdhD protein
D DAQ1742_01097 fdx; Ferredoxin, 2Fe-2S K04755 fdx; ferredoxin, 2Fe-2S
D DAQ1742_03116 yfaE; Ferredoxin involved with ribonucleotide reductase cofactor; diferric-tyrosyl radical (Y*) cofactor maintenance K11107 yfaE; ferredoxin
D DAQ1742_02212 rsxG; Electron transport complex protein RnfG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D DAQ1742_02213 rsxE; Electron transport complex protein RnfE K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D DAQ1742_02208 rsxA; Electron transport complex protein RnfA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D DAQ1742_04461 hydN; formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit hydN K05796 hydN; electron transport protein HydN
D DAQ1742_01477 hydN; Hydrogenase-4 component A K05796 hydN; electron transport protein HydN
D DAQ1742_00001 mioC; Flavoprotein MioC K06205 mioC; MioC protein
D DAQ1742_00744 fldB; Flavodoxin 2 K03840 fldB; flavodoxin II
D DAQ1742_01487 hyfH; Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit K12143 hyfH; hydrogenase-4 component H
D DAQ1742_01092 iscU; Iron-sulfur cluster assembly scaffold protein IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D DAQ1742_01423 cybC; Soluble cytochrome b562 K15536 cybC; soluble cytochrome b562
D DAQ1742_03012 fldA; Flavodoxin 1 K03839 fldA; flavodoxin I
D DAQ1742_00886 nrfC; formate-dependent nitrite reductase, Fe-S protein, anaerobi respiration K04014 nrfC; protein NrfC
D DAQ1742_00885 nrfD; Nitrite reductase, formate-dependent, anaerobic respiration K04015 nrfD; protein NrfD
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D DAQ1742_00871 cysZ; Sulfate transporter, CysZ-type K06203 cysZ; CysZ protein
D DAQ1742_03308 yaeR; predicted lyase K08234 yaeR; glyoxylase I family protein
D DAQ1742_02679 mpaA; murein peptide amidase A. murein tripeptide hydrolysis, cleaves glutamyl-DAP bond K14054 mpaA; murein peptide amidase A
D DAQ1742_03621 yggS; pyridoxal 5'-phosphate binding protein, function unknown K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D DAQ1742_02710 yciS; Inner membrane protein yciS K08992 lapA; lipopolysaccharide assembly protein A
D DAQ1742_02709 yciM; Heat shock (predicted periplasmic) protein YciM, precursor K19804 lapB; lipopolysaccharide assembly protein B
D DAQ1742_00094 bcsB; Cyclic di-GMP binding protein precursor K20541 bcsB; cellulose synthase operon protein B
C 99987 Cofactor metabolism
D DAQ1742_04211 hemY; Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) K02498 hemY; HemY protein
D DAQ1742_00256 ubiB; Ubiquinone biosynthesis monooxygenase UbiB K03688 ubiB; ubiquinone biosynthesis protein
D DAQ1742_00255 yigP; Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D DAQ1742_00874 yqiC; hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D DAQ1742_00709 yhbT; FIG138517: Putative lipid carrier protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D DAQ1742_00016 mobB; Molybdopterin-guanine dinucleotide biosynthesis protein MobB K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
D DAQ1742_00429 ftsP; divisomal assembly stabilization protein K04753 sufI; suppressor of ftsI
D DAQ1742_01399 probable NADPH:quinone oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
D DAQ1742_01515 acsB; Achromobactin biosynthesis protein AcsB, HpcH/HpaI aldolase family K23376 sbnG; staphyloferrin B biosynthesis citrate synthase
C 99999 Others
D DAQ1742_00607 yqjF; Inner membrane protein YqjF K15977 K15977; putative oxidoreductase
D DAQ1742_01166 FIG00904864: hypothetical protein K15977 K15977; putative oxidoreductase
D DAQ1742_01029 putative membrane protein K15977 K15977; putative oxidoreductase
D DAQ1742_03065 ypfH; Acyl CoA esterase in vitro, physiological function unknown K06999 K06999; phospholipase/carboxylesterase
D DAQ1742_03507 patZ; Protein acetyltransferase K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D DAQ1742_02056 cspD; cold shock protein homolog,ihibitor of DNA replication;The toxic protein CspD is regulated by the toxin-antitoxin pair MqsRA and affects the formation of persister cells K03704 cspA; cold shock protein
D DAQ1742_03060 cspE; Cold shock protein;DNA-binding transcriptional repressor, RNA chaperones K03704 cspA; cold shock protein
D DAQ1742_02452 cspE; Cold shock protein;DNA-binding transcriptional repressor, RNA chaperones K03704 cspA; cold shock protein
D DAQ1742_01197 cspG; Cold shock protein CspG K03704 cspA; cold shock protein
D DAQ1742_01291 AntA/AntB antirepressor domain protein K07741 antB; anti-repressor protein
D DAQ1742_03149 glnK; Nitrogen regulatory protein P-II, glnK K04752 glnK; nitrogen regulatory protein P-II 2
D DAQ1742_04146 yhgF; Transcription accessory protein (S1 RNA-binding domain) K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D DAQ1742_02058 clpS; ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D DAQ1742_03214 tig; Cell division trigger factor K03545 tig; trigger factor
D DAQ1742_00351 yedZ; sulfite oxidase,Inner membrane heme subunit for periplasmic YedYZ reductase K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D DAQ1742_01394 fdhE; formate dehydrogenase formation protein FdhE K02380 fdhE; FdhE protein
D DAQ1742_00836 smpB; trans-translation protein; SsrA (tmRNA) and its associated protein SmpB plays an important role in rescuing stalled ribosomes and detoxifying toxic protein products under stress conditions. K03664 smpB; SsrA-binding protein
D DAQ1742_01496 hybG; [NiFe] hydrogenase metallocenter assembly protein K04653 hypC; hydrogenase expression/formation protein HypC
D DAQ1742_01380 hypG; [NiFe] hydrogenase metallocenter assembly protein HypC K04653 hypC; hydrogenase expression/formation protein HypC
D DAQ1742_01381 hypD; [NiFe] hydrogenase metallocenter assembly protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D DAQ1742_01382 hypE; [NiFe] hydrogenase metallocenter assembly protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D DAQ1742_01383 hypF; [NiFe] hydrogenase metallocenter assembly protein HypF K04656 hypF; hydrogenase maturation protein HypF
D DAQ1742_04268 yifB; MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein K07391 comM; magnesium chelatase family protein
D DAQ1742_00470 FIG00441227: hypothetical protein K07395 K07395; putative proteasome-type protease
D DAQ1742_02073 Thioredoxin-like protein clustered with PA0057 K07396 K07396; putative protein-disulfide isomerase
D DAQ1742_04082 yhfA; OsmC/Ohr family protein K07397 yhfA; putative redox protein
D DAQ1742_04150 nfuA; NfuA Fe-S protein maturation K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
D DAQ1742_03144 ybaZ; Excision repair protein; alkyltransferase-like protein ATL; binds and enhances nucleotide excision repair of O(6)-alkylguanine; DNA-binding protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D DAQ1742_03336 yqdG; DNA polymerase I K01146 xni; protein Xni
D DAQ1742_00532 yebQ; Possible restriction endonuclease K07454 K07454; putative restriction endonuclease
D DAQ1742_00518 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D DAQ1742_00216 yicR; protein associated with replication fork, possible DNA repair protein K03630 radC; DNA repair protein RadC
D DAQ1742_00667 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D DAQ1742_01225 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D DAQ1742_00253 rmuC; predicted recombination limiting protein K09760 rmuC; DNA recombination protein RmuC
D DAQ1742_02055 ybjD; Predicted ATP-dependent endonuclease of the OLD family K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D DAQ1742_00661 predicted ATP-dependent endonuclease, OLD family K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D DAQ1742_00412 Predicted endonuclease distantly related to archaeal Holliday junction resolvase K07460 yraN; putative endonuclease
D DAQ1742_00711 yhbQ; FIG137864: putative endonuclease containing a URI domain K07461 K07461; putative endonuclease
D DAQ1742_04019 dprA; Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake K04096 smf; DNA processing protein
D DAQ1742_00926 fimB; type 1 fimbriae regulatory protein FimB K07357 fimB; type 1 fimbriae regulatory protein FimB
D DAQ1742_00916 fimE; type 1 fimbriae regulatory protein FimE K07358 fimE; type 1 fimbriae regulatory protein FimE
D DAQ1742_02069 rarA; Replication-associated recombination, DNA-dependent ATPase involved in processing recombination intermediates. RarA works at replication forks affecting dimer formation K07478 ycaJ; putative ATPase
D DAQ1742_04016 yrdD; Similar to C-terminal Zn-finger domain of DNA topoisomerase I K07479 yrdD; putative DNA topoisomerase
D DAQ1742_01963 DNA primase K06919 K06919; putative DNA primase/helicase
D DAQ1742_01286 DNA primase K06919 K06919; putative DNA primase/helicase
D DAQ1742_01936 Mobile element protein K07483 K07483; transposase
D DAQ1742_01790 Mobile element protein K07483 K07483; transposase
D DAQ1742_01795 Mobile element protein K07483 K07483; transposase
D DAQ1742_02875 Mobile element protein K07483 K07483; transposase
D DAQ1742_00637 Mobile element protein K07483 K07483; transposase
D DAQ1742_00161 Mobile element protein K07486 K07486; transposase
D DAQ1742_00526 Mobile element protein K07486 K07486; transposase
D DAQ1742_01940 Mobile element protein K07486 K07486; transposase
D DAQ1742_01457 Mobile element protein K07493 K07493; putative transposase
D DAQ1742_01811 Mobile element protein K07493 K07493; putative transposase
D DAQ1742_02338 Mobile element protein K07493 K07493; putative transposase
D DAQ1742_00175 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_00176 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_01461 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_01463 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_01464 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_00294 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_00295 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_00638 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_00641 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_00642 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_01789 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_01796 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_01797 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_01798 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_03725 Phage transposase K07497 K07497; putative transposase
D DAQ1742_01941 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_02876 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_02877 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_02878 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_03160 Phage transposase K07497 K07497; putative transposase
D DAQ1742_03426 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_03427 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_01721 Phage transposase K07497 K07497; putative transposase
D DAQ1742_01938 Mobile element protein K07497 K07497; putative transposase
D DAQ1742_02672 Putative integrase for prophage CP-933R K14059 int; integrase
C 99979 Viral proteins
C 99998 Others
D DAQ1742_02691 pspA; Phage shock protein A, regulatory K03969 pspA; phage shock protein A
D DAQ1742_03132 ybaB; DNA-binding protein, function unknown; homodimer; in recR operon; may be involved in DNA repair K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D DAQ1742_04233 yifK; Probable transport protein YifK K03293 TC.AAT; amino acid transporter, AAT family
D DAQ1742_03779 Acetate permease ActP (cation/acetate symporter) K03307 TC.SSS; solute:Na+ symporter, SSS family
D DAQ1742_03247 brnQ; Branched-chain amino acid transport system carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D DAQ1742_03487 Cytosine/purine/uracil/thiamine/allantoin permease family protein K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D DAQ1742_03999 2-oxoglutarate/malate translocator K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D DAQ1742_00080 ybhI; 2-oxoglutarate/malate translocator K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D DAQ1742_02032 ybjL; predicted transporter K07085 K07085; putative transport protein
C 99978 Cell growth
D DAQ1742_02237 yciB; Intracellular septation protein K06190 ispZ; intracellular septation protein
D DAQ1742_00106 dcrB; DcrB innermembrane lipoprotein K27311 dcrB; inner membrane lipoprotein DcrB
D DAQ1742_03596 ytfE; iron metabolism protein, Iron-sulfur cluster repair protein; RIC;, confers resistance to nitric oxide and hydrogen peroxide; di-iron center K07322 ytfE; regulator of cell morphogenesis and NO signaling
D DAQ1742_02501 ycgB; FIG004684: SpoVR-like protein K06415 spoVR; stage V sporulation protein R
D DAQ1742_00236 envC; protease with a role in cell division, peptidoglycan hydrolase K22719 envC; murein hydrolase activator
C 99993 Cell motility
D DAQ1742_02829 lpoB; OM lipoprotein stimulator of MrcB transpeptidase. LpoB binds to and stimulates PBP1B (MrcB) to synthesize more peptidoglycan (murein) (Paradis-Bleau, 2010) K07337 K07337; penicillin-binding protein activator
D DAQ1742_01137 tfoX; DNA transformation protein TfoX K07343 tfoX; DNA transformation protein and related proteins
D DAQ1742_03334 syd; SecY-interacting protein; putative SecYEG quality control protein K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D DAQ1742_03796 ampE; AmpE protein K03807 ampE; AmpE protein
D DAQ1742_03386 terA; Tellurium resistance protein TerA K05792 terA; tellurite resistance protein TerA
D DAQ1742_03382 terE; Tellurium resistance protein TerE K05795 terD; tellurium resistance protein TerD
D DAQ1742_03383 terD; Tellurium resistance protein TerD K05795 terD; tellurium resistance protein TerD
D DAQ1742_03387 terZ; Tellurium resistance protein TerZ K05791 terZ; tellurium resistance protein TerZ
D DAQ1742_02533 proQ; RNA chaperone controlling proP(OUSA) in E. Coli K03607 proQ; ProP effector
D DAQ1742_00066 uspA; Universal stress protein A K06149 uspA; universal stress protein A
D DAQ1742_02149 uspE; Universal stress protein E K14055 uspE; universal stress protein E
D DAQ1742_02703 cstA; Carbon starvation protein A K06200 cstA; carbon starvation protein
D DAQ1742_00031 bipA; GTP-binding protein, similarities to the translation elongation factor subfamily of GTPases, including EF-Tu, EF-G, and LepA K06207 typA; GTP-binding protein
D DAQ1742_02880 phoH; conserved protein with nucleoside triphosphate hydrolase domain K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D DAQ1742_03032 ybeZ; predicted protein with nucleoside triphosphate hydrolase domain K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D DAQ1742_02279 yeaG; conserved protein with nucleoside triphosphate hydrolase domain, protein kinase K07180 prkA; serine protein kinase
D DAQ1742_03574 htrG; SH3 domain protein K07184 ygiM; SH3 domain protein
D DAQ1742_00559 smp; Lipoate-protein ligase A K07186 smp; membrane protein
D DAQ1742_03224 yajQ; YajQ is a survival protein required for MazF-mediated survival of a small subpopulation after inhibition of translation (Amitai, 2009) K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D DAQ1742_02068 lolA; Outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D DAQ1742_02140 lolB; Outer membrane lipoprotein LolB precursor K02494 lolB; outer membrane lipoprotein LolB
D DAQ1742_01298 mlaA; MlaA maintains outer membrane lipid asymmetry K04754 mlaA; phospholipid-binding lipoprotein MlaA
D DAQ1742_02722 slyB; Outer membrane lipoprotein pcp precursor K06077 slyB; outer membrane lipoprotein SlyB
D DAQ1742_03316 skp; periplasmic chaperone for outer membrane proteins K06142 hlpA; outer membrane protein
D DAQ1742_03525 nlpD; NlpD is a divisome associated factor which activates the peptidoglycan (PG) hydrolase AmiC involved in septal splitting K06194 nlpD; lipoprotein NlpD
D DAQ1742_00703 nlpI; Lipoprotein nlpI precursor K05803 nlpI; lipoprotein NlpI
D DAQ1742_02234 ompW; Outer membrane protein W precursor K07275 ompW; outer membrane protein
D DAQ1742_02438 yeaY; Starvation lipoprotein Slp paralog K07285 slp; outer membrane lipoprotein
D DAQ1742_03216 yajG; predicted lipoprotein expressed under anaerobiosis in E. coli K07286 yajG; uncharacterized lipoprotein
D DAQ1742_02932 asmA; A/G-specific adenine glycosylase K07289 asmA; AsmA protein
D DAQ1742_03118 ybbJ; Putative activity regulator of membrane protease YbbK K07340 ybbJ; inner membrane protein
D DAQ1742_00198 Unknown, probable transporter K02005 ABC.CD.TX; HlyD family secretion protein
D DAQ1742_02706 osmB; Osmotically inducible lipoprotein B precursor K04062 osmB; osmotically inducible lipoprotein OsmB
D DAQ1742_01107 rodZ; Cytoskeletal protein required for MreB assembly; required for swarming phenotype; transmembrane protein K15539 rodZ; cytoskeleton protein RodZ
D DAQ1742_00364 aaeX; membrane protein of efflux system K21695 aaeX; protein AaeX
C 99994 Others
D DAQ1742_04468 phoU; negative regulator of PhoR/PhoB two-component regulator K02039 phoU; phosphate transport system protein
D DAQ1742_04054 bfd; Bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin
D DAQ1742_02861 opgG; Glucans biosynthesis protein G precursor K03670 mdoG; periplasmic glucans biosynthesis protein
D DAQ1742_03385 terB; Tellurite resistance protein TerB K05793 terB; tellurite resistance protein TerB
D DAQ1742_03384 terC; Integral membrane protein TerC K05794 terC; tellurite resistance protein TerC
D DAQ1742_00590 cutA; Periplasmic divalent cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein
D DAQ1742_02317 cutC; Cytoplasmic copper homeostasis protein cutC K06201 cutC; copper homeostasis protein
D DAQ1742_03861 apaG; Protein associated with Co2+ and Mg2+ efflux K06195 apaG; ApaG protein
D DAQ1742_04204 cyaY; Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly K06202 cyaY; iron-sulfur cluster assembly protein CyaY
B
B 09194 Poorly characterized
C 99996 General function prediction only
D DAQ1742_01330 cvpA; Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D DAQ1742_01707 Phage endolysin K03791 K03791; putative chitinase
D DAQ1742_03709 Phage endolysin K03791 K03791; putative chitinase
D DAQ1742_04107 Phage endolysin K03791 K03791; putative chitinase
D DAQ1742_03176 Phage endolysin K03791 K03791; putative chitinase
D DAQ1742_02770 pqiB; Paraquat-inducible protein B K06192 pqiB; paraquat-inducible protein B
D DAQ1742_03628 elaA; Acetyltransferase K02348 elaA; ElaA protein
D DAQ1742_00561 osmY; Osmotically inducible protein OsmY K04065 osmY; hyperosmotically inducible periplasmic protein
D DAQ1742_02328 ycdX; Alkaline phosphatase; required for swarming phenotype; chaperoned by YcdY K04477 ycdX; putative hydrolase
D DAQ1742_01041 grcA; Autonomous glycine radical cofactor; can reactivate pyruvate formate lyase after oxidative stress; induced by low pH or propionate; pyruvate formate lyase homolog K06866 grcA; autonomous glycyl radical cofactor
D DAQ1742_02261 rssA; Predicted phospholipase K07001 K07001; NTE family protein
D DAQ1742_01019 erpA; Iron-sulfur cluster insertion protein; A-type Fe-S protein; essential for respiratory growth. ErpA can transfer Fe-S clusters to apo-IspG in vitro (Loiseau, 2007). iscA, sufA, and erpA are paralogs K15724 erpA; iron-sulfur cluster insertion protein
D DAQ1742_02466 ydjM; Membrane-bound metal-dependent hydrolase YdjM, induced during SOS response K07038 K07038; inner membrane protein
D DAQ1742_00104 yhjD; Inner membrane protein YhjD K07058 K07058; membrane protein
D DAQ1742_00593 fxsA; FxsA inner membrane protein K07113 fxsA; UPF0716 protein FxsA
D DAQ1742_03341 csdE; Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE K02426 sufE; cysteine desulfuration protein SufE
D DAQ1742_02857 yceA; Rhodanese domain protein, Enterobacterial subgroup K07146 K07146; UPF0176 protein
D DAQ1742_02489 FIG002903: a protein of unknown function perhaps involved in purine metabolism K07153 hflD; high frequency lysogenization protein
D DAQ1742_03558 gudX; Glucarate dehydratase K13918 gudX; glucarate dehydratase-related protein
D DAQ1742_04067 slyX; Protein SlyX K03745 slyX; SlyX protein
D DAQ1742_04018 smg; Protein of unknown function Smg K03747 smg; Smg protein
D DAQ1742_03903 creA; Conserved uncharacterized protein CreA K05805 creA; CreA protein
D DAQ1742_03931 sprT; Protein sprT K02742 sprT; SprT protein
D DAQ1742_01328 dedD; Cell division protein K03749 dedD; DedD protein
D DAQ1742_04125 damX; DamX, an inner membrane protein involved in bile resistance. Binds septal ring. K03112 damX; DamX protein
D DAQ1742_02021 sanA; Sensitivity vancomycin. Vancomycin high temperature exclusion protein K03748 sanA; SanA protein
D DAQ1742_01324 dedA; DedA protein K03975 dedA; membrane-associated protein
D DAQ1742_02535 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D DAQ1742_02771 pqiA; Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D DAQ1742_00209 yidH; Putative inner membrane protein, related to oxidative stress response K00389 yidH; putative membrane protein
D DAQ1742_02686 ycjF; Membrane protein YcjF K08990 ycjF; putative membrane protein
D DAQ1742_00110 yhhL; Putative inner membrane protein K08993 yhhL; putative membrane protein
D DAQ1742_00549 Integral membrane protein K08996 yagU; putative membrane protein
D DAQ1742_02262 ychJ; SEC-C motif domain protein K09858 K09858; SEC-C motif domain protein
D DAQ1742_03145 ybaY; predicted outer membrane lipoprotein, in E. coli ybaY has supercoiling-dependent transcription, which is associated with the osmotic stress response and acts through rpoS K09914 K09914; putative lipoprotein
D DAQ1742_01125 psiE; Predicted phosphate starvation inducible protein K13256 psiE; protein PsiE
D DAQ1742_03278 phnA; Alkylphosphonate utilization operon protein PhnA K06193 phnA; protein PhnA
C 99997 Function unknown
D DAQ1742_00939 FOG: Ankyrin repeat K06867 K06867; uncharacterized protein
D DAQ1742_03606 yjfP; palmitoyl-CoA and pNP-butyrate esterase, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases K06889 K06889; uncharacterized protein
D DAQ1742_03753 GPW/gp25 family protein K06903 W; Bacteriophage baseplate protein W
D DAQ1742_01890 hypothetical protein K06903 W; Bacteriophage baseplate protein W
D DAQ1742_02557 Phage baseplate assembly protein K06903 W; Bacteriophage baseplate protein W
D DAQ1742_01925 Gene D protein K06905 D; Bacteriophage probable baseplate hub protein
D DAQ1742_02574 Gene D protein K06905 D; Bacteriophage probable baseplate hub protein
D DAQ1742_01879 Gene D protein K06905 D; Bacteriophage probable baseplate hub protein
D DAQ1742_01885 Phage-related tail protein K06906 gpU; phage tail protein
D DAQ1742_03745 Phage tail sheath protein FI K06907 FI; Bacteriophage tail sheath protein
D DAQ1742_01926 Phage tail sheath monomer K06907 FI; Bacteriophage tail sheath protein
D DAQ1742_02570 Phage tail sheath monomer K06907 FI; Bacteriophage tail sheath protein
D DAQ1742_01880 Phage tail sheath monomer K06907 FI; Bacteriophage tail sheath protein
D DAQ1742_01927 Phage major tail tube protein K06908 FII; Bacteriophage tail tube protein
D DAQ1742_02571 Phage major tail tube protein K06908 FII; Bacteriophage tail tube protein
D DAQ1742_01881 Phage major tail tube protein K06908 FII; Bacteriophage tail tube protein
D DAQ1742_02687 ycjX; Conserved protein YcjX with nucleoside triphosphate hydrolase domain K06918 K06918; uncharacterized protein
D DAQ1742_01143 yccU; Succinyl-CoA synthetase, alpha subunit-related enzymes K06929 K06929; uncharacterized protein
D DAQ1742_02724 ydhL; Predicted Fe-S protein K06938 K06938; uncharacterized protein
D DAQ1742_01993 proteinase inhibitor K06940 K06940; uncharacterized protein
D DAQ1742_00513 NgrB K06946 K06946; uncharacterized protein
D DAQ1742_00665 NgrB K06946 K06946; uncharacterized protein
D DAQ1742_01217 NgrB K06946 K06946; uncharacterized protein
D DAQ1742_02155 COG2907: Amine oxidase, flavin-containing K06954 K06954; uncharacterized protein
D DAQ1742_02467 ydjN; Preddicted symporter K06956 K06956; uncharacterized protein
D DAQ1742_02826 ycfP; YcfP protein: probably an esterase that is part of a salvage cluster K07000 K07000; uncharacterized protein
D DAQ1742_00422 yqiA; Putative esterase, FIGfam005057 K07000 K07000; uncharacterized protein
D DAQ1742_01972 yejM; FIG001881: hydrolase of alkaline phosphatase superfamily K07014 K07014; uncharacterized protein
D DAQ1742_04079 yheT; Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase K07019 K07019; uncharacterized protein
D DAQ1742_03888 satP; acetate / succinate:H+?symporter K07034 K07034; uncharacterized protein
D DAQ1742_04074 yheV; Putative cytoplasmic protein, probably associated with Glutathione-regulated potassium-efflux K07070 K07070; uncharacterized protein
D DAQ1742_01338 yfcH; Cell division inhibitor, Predicted NAD-dependent nucleotide-sugar epimerase K07071 K07071; uncharacterized protein
D DAQ1742_01762 Protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D DAQ1742_01309 yfcA; Putative membrane protein YfcA K07090 K07090; uncharacterized protein
D DAQ1742_04371 Protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D DAQ1742_04217 Bll7429 protein K07090 K07090; uncharacterized protein
D DAQ1742_03863 Putative phosphatase K07093 K07093; uncharacterized protein
D DAQ1742_01340 yfcE; FIG002292: Phosphodiesterase yfcE K07095 K07095; uncharacterized protein
D DAQ1742_04450 Rrf2-linked NADH-flavin reductase K07118 K07118; uncharacterized protein
D DAQ1742_04195 abrB; membrane protein AbrB duplication;AbrB family transcriptional regulator K07120 K07120; uncharacterized protein
D DAQ1742_00413 lpoA; OM lipoprotein stimulator of MrcA transpeptidase. LpoA binds to and stimulates PBP1A (MrcA) to synthesize more peptidoglycan K07121 K07121; uncharacterized protein
D DAQ1742_01779 Oxidoreductase, short chain dehydrogenase/reductase family K07124 K07124; uncharacterized protein
D DAQ1742_02313 yecN; FIG01046209: inner membrane protein K07136 K07136; uncharacterized protein
D DAQ1742_00405 yhcC; COG1242: Predicted Fe-S oxidoreductase K07139 K07139; uncharacterized protein
D DAQ1742_02774 ycbX; YcbX is involved in the detoxification of 6-N-hydroxylaminopurine (HAP), which proceeds by a reduction to adenine (Kozmin, 2008). YcbX is a molybdoenzyme K07140 K07140; MOSC domain-containing protein
D DAQ1742_02020 yeiB; FIG00924762: possible membrane protein K07148 K07148; uncharacterized protein
D DAQ1742_02964 yqqA; Putative inner membrane protein K07150 K07150; uncharacterized protein
D DAQ1742_04440 yidD; inner membrane protein insertion factor K08998 K08998; uncharacterized protein
D DAQ1742_03624 yggU; COG1872 K09131 K09131; uncharacterized protein
D DAQ1742_03053 ybeD; Proposed lipoate regulatory protein YbeD K09158 K09158; uncharacterized protein
D DAQ1742_02430 ycgN; cysteine cluster protein, function unknown, may be involved in metal binding K09160 K09160; uncharacterized protein
D DAQ1742_01346 yfbU; Cell death gene, function unknown, UPF0304 family. YfbU is required for MazF-mediated cell death after DNA damage (Amitai, 2009) K09161 K09161; uncharacterized protein
D DAQ1742_02154 Hypothetical protein COG3496 K09701 K09701; uncharacterized protein
D DAQ1742_00846 yaiI; probable P23 protein K09768 K09768; uncharacterized protein
D DAQ1742_02240 yciL; YciL protein K09780 K09780; uncharacterized protein
D DAQ1742_02280 yeaH; UPF0229 protein YeaH K09786 K09786; uncharacterized protein
D DAQ1742_03135 ybaN; Hypothetical protein DUF454 K09790 K09790; uncharacterized protein
D DAQ1742_02115 ycaR; FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster K09791 K09791; uncharacterized protein
D DAQ1742_04421 putative periplasmic protein K09795 K09795; uncharacterized protein
D DAQ1742_00235 yibQ; Possible divergent periplasmic polysaccharide deacetylase K09798 K09798; uncharacterized protein
D DAQ1742_00838 ratB; Antitoxin. Second gene in ratAB toxin operon. RatAB function has been characterized in EPEC strain CFT073 as a true toxin-antitoxin module, with RatA contributing to oxidative and nitrosative stress resistance at low levels and causing growth inhibition and facilitating persister cell formation K09801 K09801; uncharacterized protein
D DAQ1742_02112 yeeX; UPF0265 protein YeeX K09802 K09802; uncharacterized protein
D DAQ1742_03917 yggE; Protein of unknown function DUF541 K09807 K09807; uncharacterized protein
D DAQ1742_02923 ybjX; Hypothetical protein, homology with Salmonella VirK K09824 virK; uncharacterized protein
D DAQ1742_02769 ymbA; probable lipoprotein protein YPO1422 K09857 K09857; uncharacterized protein
D DAQ1742_03895 yaaA; Peroxide resistance protein, lowers intracellular iron K09861 K09861; uncharacterized protein
D DAQ1742_03807 yacG; DNA gyrase inhibitor K09862 K09862; uncharacterized protein
D DAQ1742_00310 yjaG; FIG01200173: hypothetical protein K09891 K09891; uncharacterized protein
D DAQ1742_00024 yihI; Activator of Der GTPase, YihI stimulates Der GTPase. possibly acting as a negative regulator of 50S ribosome assembly and retarding early exponential growth K09894 K09894; uncharacterized protein
D DAQ1742_00553 ygfB; FIG001590: Putative conserved exported protein precursor K09895 K09895; uncharacterized protein
D DAQ1742_00018 yihD; Protein yihD K09896 K09896; uncharacterized protein
D DAQ1742_04269 yifE; Protein yifE K09897 K09897; uncharacterized protein
D DAQ1742_04080 yheU; FIG01199774: hypothetical protein K09898 K09898; uncharacterized protein
D DAQ1742_01345 yfbV; Ter macrodomain insulation protein; inner membrane protein K09899 K09899; uncharacterized protein
D DAQ1742_02245 yciU; FIG002901: hypothetical protein co-occurring with Cardiolipin synthetase K09901 K09901; uncharacterized protein
D DAQ1742_01973 yejL; FIG002927: hypothetical protein K09904 K09904; uncharacterized protein
D DAQ1742_02318 yecM; predicted metal-binding enzyme K09907 K09907; uncharacterized protein
D DAQ1742_00397 yhcB; Putative cytochrome d ubiquinol oxidase subunit III (Cytochrome bd-I oxidase subunit III) K09908 K09908; uncharacterized protein
D DAQ1742_01142 UPF0319 protein YccT precursor K09909 K09909; uncharacterized protein
D DAQ1742_03784 yacL; FIG00613276: hypothetical protein K09910 K09910; uncharacterized protein
D DAQ1742_02869 matP; Macrodomain Ter protein YcbG K09911 K09911; uncharacterized protein
D DAQ1742_02322 yceH; Protein of unknown function YceH K09915 K09915; uncharacterized protein
D DAQ1742_02273 yeaC; Uncharacterized protein YeaC K09916 K09916; uncharacterized protein
D DAQ1742_02443 yoaH; hypothetical protein K09917 K09917; uncharacterized protein
D DAQ1742_00420 yqiB; Predicted dehydrogenase K09920 K09920; uncharacterized protein
D DAQ1742_04201 yigA; Protein of unknown function DUF484 K09921 K09921; uncharacterized protein
D DAQ1742_03987 FIG00613513: hypothetical protein K09922 K09922; uncharacterized protein
D DAQ1742_03366 yggL; FIG002060: uncharacterized protein YggL K09923 K09923; uncharacterized protein
D DAQ1742_03940 yjeT; Putative inner membrane protein YjeT (clustered with HflC) K09937 K09937; uncharacterized protein
D DAQ1742_01558 Uncharacterized protein conserved in bacteria K09945 K09945; uncharacterized protein
D DAQ1742_03568 ypeB; FIG074102: hypothetical protein K09954 K09954; uncharacterized protein
D DAQ1742_04362 Urea carboxylase-related aminomethyltransferase K09967 K09967; uncharacterized protein
D DAQ1742_04363 Urea carboxylase-related aminomethyltransferase K09967 K09967; uncharacterized protein
D DAQ1742_03121 ybaP; FIG00921183: possible ligase K09973 K09973; uncharacterized protein
D DAQ1742_01175 ves; Various environmental stresses. Cold and stress-inducible protein K09975 K09975; uncharacterized protein
D DAQ1742_00461 yhbP; FIG00613082: hypothetical protein K09979 K09979; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 3, 2024