+F Repair protein KO #

  DNA Repair and Recombination Proteins - Desulfonema magnum

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D dnm_100390 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E dnm_031290 Adenine DNA glycosylase domain-containing protein, MutY-like K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E dnm_076700 Putative endonuclease III, Nth-like K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E dnm_050580 Helicase family protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D dnm_063290 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D dnm_073840 Hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D dnm_099300 Hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D dnm_100390 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E dnm_070860 Uracil DNA glycolyase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E dnm_100400 Putative DNA-3-methyladenine glycosylase II K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E dnm_031290 Adenine DNA glycosylase domain-containing protein, MutY-like K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E dnm_063730 DNA-3-methyladenine glycosylase 1, Tag-like K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E dnm_076700 Putative endonuclease III, Nth-like K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E dnm_088570 exoA; Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E dnm_098050 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E dnm_083670 recJ; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E dnm_055080 ligA1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E dnm_098170 ligA2; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E dnm_080790 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E dnm_070440 uvrA; UvrABC system, protein A K03701 uvrA; excinuclease ABC subunit A E dnm_070360 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E dnm_076180 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E dnm_023670 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E dnm_027100 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E dnm_030730 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E dnm_080790 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E dnm_055080 ligA1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E dnm_098170 ligA2; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F dnm_013700 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F dnm_013710 rpoC; DNA-directed RNA polymerase, subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F dnm_014060 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F dnm_006230 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F dnm_040050 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E dnm_082690 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E dnm_045820 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E dnm_079140 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E dnm_089290 xseA; Exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E dnm_089280 xseB; Exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E dnm_065670 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E dnm_006400 dnaN; Beta sliding clamp K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E dnm_063220 DNA polymerase III N-terminal domain-containing protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E dnm_063410 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E dnm_020110 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E dnm_055080 ligA1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E dnm_098170 ligA2; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E dnm_023670 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E dnm_027100 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E dnm_030730 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E dnm_047990 ssb; single-stranded DNA-binding protein, helix-destabilizing K03111 ssb; single-strand DNA-binding protein E dnm_010570 SAM-dependent methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E dnm_030770 Very short patch repair endonucleases K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E dnm_018670 recB; Exodeoxyribonuclease V, subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E dnm_049980 recC; Exodeoxyribonuclease V, subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E dnm_018690 recD; Exodeoxyribonuclease V, subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E dnm_049990 ATP-dependent DNA helicase RecD domain-containing protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E dnm_024560 recA; Recombinase A K03553 recA; recombination protein RecA E dnm_035640 ruvA; Holliday junction ATP-dependent DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E dnm_079370 ruvB; Holliday junction ATP-dependent DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E dnm_035650 ruvC; Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E dnm_010890 priA; Primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E dnm_079140 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E dnm_024560 recA; Recombinase A K03553 recA; recombination protein RecA E dnm_018910 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E dnm_002100 Schlafen AAA domain-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E dnm_024440 Schlafen and ATP-dependent DNA helicase domains-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E dnm_054930 Schlafen and ATP-dependent DNA helicase domains-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E dnm_080400 ATP-dependent DNA helicase RecG C-terminal domain-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E dnm_083670 recJ; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E dnm_060320 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E dnm_020130 recR; Recombination protein K06187 recR; recombination protein RecR E dnm_082790 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E dnm_006380 Exonuclease family protein K03554 rdgC; recombination associated protein RdgC E dnm_035640 ruvA; Holliday junction ATP-dependent DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E dnm_079370 ruvB; Holliday junction ATP-dependent DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E dnm_035650 ruvC; Crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E dnm_042540 cas1-1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E dnm_064790 cas1-2; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E dnm_081560 cas1-3; CRISPR-associated endonuclease K15342 cas1; CRISP-associated protein Cas1 E dnm_098400 cas1-4; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E dnm_098840 cas1-5; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F dnm_096390 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F dnm_005870 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F dnm_052390 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F dnm_007930 DNA-binding domain-containing protein K03530 hupB; DNA-binding protein HU-beta F dnm_055060 hup; DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F dnm_083670 recJ; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F dnm_060320 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F dnm_020130 recR; Recombination protein K06187 recR; recombination protein RecR F dnm_055080 ligA1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F dnm_098170 ligA2; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F dnm_040010 Histone-like DNA-binding family protein K04764 ihfA; integration host factor subunit alpha F dnm_084230 DNA-binding protein K04764 ihfA; integration host factor subunit alpha F dnm_063420 Putative integration host factor subunit beta, IhfB-like K05788 ihfB; integration host factor subunit beta E Supressor F dnm_079140 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F dnm_091670 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F dnm_094500 Putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F dnm_070440 uvrA; UvrABC system, protein A K03701 uvrA; excinuclease ABC subunit A F dnm_070360 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D dnm_024560 recA; Recombinase A K03553 recA; recombination protein RecA D dnm_086080 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D dnm_082790 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D dnm_047990 ssb; single-stranded DNA-binding protein, helix-destabilizing K03111 ssb; single-strand DNA-binding protein D dnm_041790 recX; Regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D dnm_091710 ATP-dependent helicase C-terminal domain-containing protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D dnm_063290 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D dnm_073840 Hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D dnm_099300 Hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] C Others D dnm_094920 DHH domain-containing protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024