+E Transcription factors KO
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Transcription Factors - Oceanidesulfovibrio marinus
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D E8L03_19510 helix-turn-helix transcriptional regulator K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors
D E8L03_16795 GyrI-like domain-containing protein K13652 K13652; AraC family transcriptional regulator
D E8L03_19680 helix-turn-helix transcriptional regulator K07506 K07506; AraC family transcriptional regulator
C LysR family
D E8L03_14560 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D E8L03_11820 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D E8L03_07515 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D E8L03_12850 DeoR/GlpR transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D E8L03_18750 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D E8L03_07535 LacI family DNA-binding transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D E8L03_02915 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D E8L03_15945 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D E8L03_20600 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D E8L03_04115 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D E8L03_18645 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D E8L03_00530 TetR/AcrR family transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator
D E8L03_06445 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D E8L03_14110 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D E8L03_04955 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D E8L03_19620 TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D E8L03_19705 helix-turn-helix transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D E8L03_16200 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D E8L03_14005 Lrp/AsnC family transcriptional regulator K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes
C LuxR family
C MarR family
C MerR family
C Fur family
D E8L03_20280 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D E8L03_20300 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D E8L03_18570 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D E8L03_11440 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
C CRP/FNR family
D E8L03_01095 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D E8L03_09495 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D E8L03_13515 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D E8L03_07470 Crp/Fnr family transcriptional regulator K21555 cooA; CRP/FNR family transcriptional regulator, carbon monoxide oxidation system transcription regulator
D E8L03_14535 Crp/Fnr family transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D E8L03_04985 Rrf2 family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
C ArsR family
D E8L03_16415 winged helix-turn-helix transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D E8L03_10100 helix-turn-helix transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D E8L03_04530 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D E8L03_17430 AAA family ATPase K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D E8L03_03675 transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D E8L03_07080 sigma-54-dependent Fis family transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator
D E8L03_07395 GAF domain-containing protein K15836 fhlA; formate hydrogenlyase transcriptional activator
D E8L03_05355 GAF domain-containing protein K02584 nifA; Nif-specific regulatory protein
D E8L03_11500 GAF domain-containing protein K02584 nifA; Nif-specific regulatory protein
D E8L03_14785 GAF domain-containing protein K02584 nifA; Nif-specific regulatory protein
D E8L03_00875 transcriptional regulator K06714 rocR; arginine utilization regulatory protein
D E8L03_08615 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D E8L03_11515 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D E8L03_11845 molybdenum-pterin-binding protein K02019 modE; molybdate transport system regulatory protein
D E8L03_13550 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D E8L03_15795 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D E8L03_14705 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D E8L03_00645 DNA-binding transcriptional regulator K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D E8L03_17415 nikR; nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D E8L03_16195 pruA; L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D E8L03_14315 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D E8L03_04595 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D E8L03_19110 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D E8L03_14420 pspF; phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D E8L03_14435 PspC domain-containing protein K03973 pspC; phage shock protein C
D E8L03_04160 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D E8L03_10875 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein
D E8L03_02380 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D E8L03_06365 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D E8L03_08435 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D E8L03_09450 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D E8L03_07960 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0