+E Transcription factors KO #

  Transcription Factors - Oceanidesulfovibrio marinus

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D E8L03_19510 helix-turn-helix transcriptional regulator K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors D E8L03_16795 GyrI-like domain-containing protein K13652 K13652; AraC family transcriptional regulator D E8L03_19680 helix-turn-helix transcriptional regulator K07506 K07506; AraC family transcriptional regulator C LysR family D E8L03_14560 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D E8L03_11820 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D E8L03_07515 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon C DeoR family D E8L03_12850 DeoR/GlpR transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D E8L03_18750 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D E8L03_07535 LacI family DNA-binding transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D E8L03_02915 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D E8L03_15945 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D E8L03_20600 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D E8L03_04115 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D E8L03_18645 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex C TetR/AcrR family D E8L03_00530 TetR/AcrR family transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator D E8L03_06445 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D E8L03_14110 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D E8L03_04955 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D E8L03_19620 TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D E8L03_19705 helix-turn-helix transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D E8L03_16200 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D E8L03_14005 Lrp/AsnC family transcriptional regulator K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes C LuxR family C MarR family C MerR family C Fur family D E8L03_20280 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D E8L03_20300 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D E8L03_18570 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family D E8L03_11440 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor C CRP/FNR family D E8L03_01095 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D E8L03_09495 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D E8L03_13515 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D E8L03_07470 Crp/Fnr family transcriptional regulator K21555 cooA; CRP/FNR family transcriptional regulator, carbon monoxide oxidation system transcription regulator D E8L03_14535 Crp/Fnr family transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator C Rrf2 family D E8L03_04985 Rrf2 family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor C ArsR family D E8L03_16415 winged helix-turn-helix transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor C XRE family D E8L03_10100 helix-turn-helix transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family C Other families D E8L03_04530 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D E8L03_17430 AAA family ATPase K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D E8L03_03675 transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D E8L03_07080 sigma-54-dependent Fis family transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator D E8L03_07395 GAF domain-containing protein K15836 fhlA; formate hydrogenlyase transcriptional activator D E8L03_05355 GAF domain-containing protein K02584 nifA; Nif-specific regulatory protein D E8L03_11500 GAF domain-containing protein K02584 nifA; Nif-specific regulatory protein D E8L03_14785 GAF domain-containing protein K02584 nifA; Nif-specific regulatory protein D E8L03_00875 transcriptional regulator K06714 rocR; arginine utilization regulatory protein D E8L03_08615 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D E8L03_11515 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D E8L03_11845 molybdenum-pterin-binding protein K02019 modE; molybdate transport system regulatory protein D E8L03_13550 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D E8L03_15795 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D E8L03_14705 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D E8L03_00645 DNA-binding transcriptional regulator K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family D E8L03_17415 nikR; nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D E8L03_16195 pruA; L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D E8L03_14315 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D E8L03_04595 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D E8L03_19110 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D E8L03_14420 pspF; phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator D E8L03_14435 PspC domain-containing protein K03973 pspC; phage shock protein C D E8L03_04160 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D E8L03_10875 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein D E8L03_02380 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor D E8L03_06365 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D E8L03_08435 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor D E8L03_09450 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor D E8L03_07960 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0