+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Aromatoleum aromaticum

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D ebA5539 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases D ebA56 conserved hypothetical protein, putative kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D ebA5206 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C ebA5540 era; GTP-binding protein Era homolog K03595 era; GTPase C ebA843 putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C ebB202 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor C ebA5840 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA C ebA3564 nusB; N utilization substance protein B,transcription termination factor K03625 nusB; transcription antitermination protein NusB C ebA3811 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D ebA2976 rsuA; ribosomal small subunit pseudouridine synthase A protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D ebA1138 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D ebA2833 sun; tRNA and rRNA cytosine-C5-methylases sun K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D ebA650 sun homolog protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D ebA1396 probable N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D ebA1094 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D ebA2913 gidB; Methyltransferase gidB, Glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D ebA1452 mraW; S-adenosyl-methyltransferase mraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D ebA1457 conserved hypothetical protein,predicted methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D ebA5446 Uroporphyrin-III C/tetrapyrrole (Corrin/porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] C 23S rRNA modification factors D ebA1246 spoU; tRNA/RRNA methyltransferase protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D ebA4820 ftsJ; cell division protein FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D ebA3968 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D ebA3956 predicted SAM-dependent methyltransferases K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D ebA6174 predicted protein involved in catabolism of external DNA K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D ebA1773 N6-adenine-specific DNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D ebA4504 predicted SAM-dependent methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D ebA1268 predicted Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D ebA5068 predicted Fe-S-cluster redox enzyme,radical SAM family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D ebA771 rumA; 23S rRNA (Uracil-5-)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D ebA6135 rsuA; pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D ebA5443 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D ebA4725 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D ebA713 Pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D ebA4056 rsuA; propable 16S pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C ebA6491 Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C ebA7167 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM C ebA4733 radical SAM protein similar to MiaB K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C ebA2851 conserved hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C ebA1475 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C ebA6390 Adenine specific methylase, HemK family K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] B rRNA processing factors C ebA5539 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C ebA5441 rne; ribonuclease E (RNase E) K08300 rne; ribonuclease E [EC:3.1.26.12] C ebA3964 cafA; ribonuclease G (RNase G) K08301 rng; ribonuclease G [EC:3.1.26.-] C ebA1756 holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C ebA5738 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C ebA5540 era; GTP-binding protein Era homolog K03595 era; GTPase C ebA5204 engC; putative GTPase engC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C ebA1256 engA; GTP-binding protein engA K03977 engA; GTPase C ebA843 putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] C ebA6197 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A C ebA503 putative GTP-binding protein K03665 hflX; GTPase C ebA1254 hflX; GTP-binding protein hflX K03665 hflX; GTPase B Other maturation factors C ebA110 sua5; putative translation factor (SUA5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C ebA3497 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C ebA5842 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C ebA5838 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP C ebA3971 conserved hypothetical protein,predicted iojap-related protein family K09710 ybeB; ribosome-associated protein C ebA1336 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor C ebA4819 predicted RNA-binding protein containing KH domain, possibly ribosomal protein K07574 yhbY; RNA-binding protein C ebA1030 conserved hypothetical protein K09889 yjgA; ribosome-associated protein C ebB108 Sigma 54 modulation protein / S30EA ribosomal protein K05808 hpf; ribosome hibernation promoting factor C ebA4139 predicted GTPase, probably involved in regulation of ribosome function K06942 ychF; ribosome-binding ATPase C ebA5452 predicted metal-binding, possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024