+E Ribosome biogenesis KO
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Ribosome Biogenesis - Aromatoleum aromaticum
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D ebA5539 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D ebA56 conserved hypothetical protein, putative kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D ebA5206 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C ebA5540 era; GTP-binding protein Era homolog K03595 era; GTPase
C ebA843 putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C ebB202 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C ebA5840 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C ebA3564 nusB; N utilization substance protein B,transcription termination factor K03625 nusB; transcription antitermination protein NusB
C ebA3811 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D ebA2976 rsuA; ribosomal small subunit pseudouridine synthase A protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D ebA1138 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D ebA2833 sun; tRNA and rRNA cytosine-C5-methylases sun K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D ebA650 sun homolog protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D ebA1396 probable N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D ebA1094 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D ebA2913 gidB; Methyltransferase gidB, Glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D ebA1452 mraW; S-adenosyl-methyltransferase mraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D ebA1457 conserved hypothetical protein,predicted methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D ebA5446 Uroporphyrin-III C/tetrapyrrole (Corrin/porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D ebA1246 spoU; tRNA/RRNA methyltransferase protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D ebA4820 ftsJ; cell division protein FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D ebA3968 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D ebA3956 predicted SAM-dependent methyltransferases K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D ebA6174 predicted protein involved in catabolism of external DNA K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D ebA1773 N6-adenine-specific DNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D ebA4504 predicted SAM-dependent methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D ebA1268 predicted Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D ebA5068 predicted Fe-S-cluster redox enzyme,radical SAM family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D ebA771 rumA; 23S rRNA (Uracil-5-)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D ebA6135 rsuA; pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D ebA5443 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D ebA4725 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D ebA713 Pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D ebA4056 rsuA; propable 16S pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C ebA6491 Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C ebA7167 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C ebA4733 radical SAM protein similar to MiaB K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C ebA2851 conserved hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C ebA1475 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C ebA6390 Adenine specific methylase, HemK family K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
B rRNA processing factors
C ebA5539 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C ebA5441 rne; ribonuclease E (RNase E) K08300 rne; ribonuclease E [EC:3.1.26.12]
C ebA3964 cafA; ribonuclease G (RNase G) K08301 rng; ribonuclease G [EC:3.1.26.-]
C ebA1756 holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C ebA5738 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C ebA5540 era; GTP-binding protein Era homolog K03595 era; GTPase
C ebA5204 engC; putative GTPase engC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C ebA1256 engA; GTP-binding protein engA K03977 engA; GTPase
C ebA843 putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C ebA6197 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A
C ebA503 putative GTP-binding protein K03665 hflX; GTPase
C ebA1254 hflX; GTP-binding protein hflX K03665 hflX; GTPase
B Other maturation factors
C ebA110 sua5; putative translation factor (SUA5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C ebA3497 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C ebA5842 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C ebA5838 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C ebA3971 conserved hypothetical protein,predicted iojap-related protein family K09710 ybeB; ribosome-associated protein
C ebA1336 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
C ebA4819 predicted RNA-binding protein containing KH domain, possibly ribosomal protein K07574 yhbY; RNA-binding protein
C ebA1030 conserved hypothetical protein K09889 yjgA; ribosome-associated protein
C ebB108 Sigma 54 modulation protein / S30EA ribosomal protein K05808 hpf; ribosome hibernation promoting factor
C ebA4139 predicted GTPase, probably involved in regulation of ribosome function K06942 ychF; ribosome-binding ATPase
C ebA5452 predicted metal-binding, possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024