+D GENES KO
#
KEGG Orthology (KO) - Escherichia fergusonii
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:efe00010]
D EFER_0780 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D EFER_4117 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D EFER_3857 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D EFER_1345 pfkB; 6-phosphofructokinase II K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D EFER_4310 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D EFER_3848 glpX; fructose 1,6-bisphosphatase II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D EFER_2862 yggF; putative hexoseP phosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D EFER_2182 fbaB; fructose-bisphosphate aldolase class I K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D EFER_2857 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D EFER_0431 putative triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D EFER_3854 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D EFER_1585 gapC; glyceraldehyde-3-phosphate dehydrogenase C K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D EFER_1293 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D EFER_2858 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D EFER_2354 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D EFER_4494 ytjC; phosphoglyceromutase 2, co-factor independent K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D EFER_3606 gpmI; phosphoglycero mutase III, cofactor-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D EFER_0285 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D EFER_1376 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D EFER_1218 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D EFER_1362 pps; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D EFER_0135 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D EFER_0136 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D EFER_4150 putative dihydrolipoyl dehydrogenase, E3 component (lpd-like) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_0137 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_1622 ydbK; putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D EFER_4154 Putative malate/L-lactate dehydrogenases K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D EFER_1582 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D EFER_1714 adhE; fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D EFER_1495 adhP; alcohol dehydrogenase, 1-propanol preferring K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D EFER_3583 yiaY; Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D EFER_3870 alcohol dehydrogenase in rhamnose degradation pathway K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D EFER_3111 yjgB; putative alcohol dehydrogenase, Zn-dependent and NAD(P)-binding K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183]
D EFER_0726 eutG; putative alcohol dehydrogenase in ethanolamine utilization; ethanolaminosome K04022 eutG; alcohol dehydrogenase
D EFER_3582 aldB; aldehyde dehydrogenase B K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D EFER_4296 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D EFER_2353 galM; galactose-1-epimerase (mutarotase) K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D EFER_1153 agp; glucose-1-phosphatase/inositol phosphatase K01085 agp; glucose-1-phosphatase [EC:3.1.3.10]
D EFER_3894 yihX; putative hydrolase K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D EFER_2420 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D EFER_1292 yeaD; conserved hypothetical protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D EFER_3369 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D EFER_1333 chbF; cryptic phospho-beta-glucosidase, NAD(P)-binding K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D EFER_4019 bglB; cryptic phospho-beta-glucosidase B K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D EFER_0361 ascB; cryptic 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D EFER_2837 bglA; 6-phospho-beta-glucosidase A K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D EFER_3958 putative glycosyl phosphatase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D EFER_0755 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D EFER_1826 ptsG; fused glucose-specific PTS enzymes: IIB component; IIC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D EFER_0362 ascF; fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component; IIC component K02753 ascF; beta-glucoside (arbutin/salicin/cellobiose) PTS system EIICB component [EC:2.7.1.-]
C 00020 Citrate cycle (TCA cycle) [PATH:efe00020]
D EFER_2394 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D EFER_1678 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D EFER_3665 Putative aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D EFER_3667 Conserved Hypothetical protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D EFER_0139 acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D EFER_3669 Putative Aconitate hydratase 2 (Citrate hydro-lyase 2) (Aconitase 2) K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D EFER_1794 icd; isocitrate dehydrogenase, specific for NADP+; e14 prophage K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D EFER_3668 Putative Isocitrate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
D EFER_2387 sucA; 2-oxoglutarate decarboxylase, thiamin-requiring K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D EFER_2386 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D EFER_4149 sucB; dihydrolipoamide succinyltransferase (E2 component) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D EFER_4150 putative dihydrolipoyl dehydrogenase, E3 component (lpd-like) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_0137 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_2384 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D EFER_4152 sucD; Succinyl-CoA synthetase alpha chain (SCS-alpha) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D EFER_2385 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D EFER_4151 sucC; Succinyl-CoA synthetase beta chain (SCS-beta) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D EFER_2389 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D EFER_2388 sdhB; succinate dehydrogenase, FeS subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D EFER_2391 sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D EFER_2390 sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D EFER_4208 frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D EFER_4207 frdB; fumarate reductase (anaerobic), Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D EFER_4206 frdC; fumarate reductase (anaerobic), membrane anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D EFER_4205 frdD; fumarate reductase (anaerobic), membrane anchor subunit K00247 frdD; succinate dehydrogenase subunit D
D EFER_2382 Fumarate hydratase class I, beta subunit, aerobic (Fumarase) K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D EFER_4176 fumB; anaerobic class I fumarate hydratase (fumarase B) K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D EFER_1425 fumA; fumarate hydratase (fumarase A), aerobic Class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D EFER_1426 fumC; fumarate hydratase (fumarase C),aerobic Class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D EFER_1377 ydhZ; conserved hypothetical protein K01675 fumD; fumarate hydratase D [EC:4.2.1.2]
D EFER_2861 yggD; putative DNA-binding transcriptional regulator K01774 fumE; fumarate hydratase E [EC:4.2.1.2]
D EFER_3213 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D EFER_0950 mqo; malate dehydrogenase, FAD/NAD(P)-binding domain K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D EFER_3369 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D EFER_0135 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D EFER_0136 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D EFER_1622 ydbK; putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:efe00030]
D EFER_4117 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D EFER_1221 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D EFER_2342 pgl; 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D EFER_3663 putative lactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D EFER_2112 gnd; gluconate-6-phosphate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D EFER_3352 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D EFER_2514 putative transketolase C-terminal section K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D EFER_2515 putative transketolase N-terminal section (TK) K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D EFER_0714 tktB; transketolase 2, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D EFER_0869 putative carbohydrate degradation enzyme K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D EFER_0870 putative carbohydrate degradation enzyme K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D EFER_2867 tktA; transketolase 1, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D EFER_0007 talB; transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2]
D EFER_0715 talA; transaldolase A K00616 TALDO1; transaldolase [EC:2.2.1.2]
D EFER_0427 Transaldolase A K00616 TALDO1; transaldolase [EC:2.2.1.2]
D EFER_2851 rpiA; ribose 5-phosphate isomerase, constitutive K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D EFER_4280 rpiB; ribose 5-phosphate isomerase B/allose 6-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D EFER_0428 putative Galactose-6-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D EFER_4478 deoC; 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D EFER_4051 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D EFER_0074 Putative transcriptional regulator of sugar metabolism K00852 rbsK; ribokinase [EC:2.7.1.15]
D EFER_4480 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D EFER_3346 yhfW; putative mutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D EFER_2420 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D EFER_1754 prsA; phosphoribosylpyrophosphate synthase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D EFER_1222 edd; 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D EFER_1223 eda; multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D EFER_0145 gcd; glucose dehydrogenase K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2]
D EFER_3554 tiaE; 2-oxo-carboxylic acid reductase (glyoxalate reductase) (2-ketoaldonate reductase) K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D EFER_3413 gntK; gluconate kinase 2; gluconate transport, GNT I system K00851 idnK; gluconokinase [EC:2.7.1.12]
D EFER_3509 kdgK; ketodeoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D EFER_3552 2-dehydro-3-deoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D EFER_2182 fbaB; fructose-bisphosphate aldolase class I K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D EFER_2857 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D EFER_4310 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D EFER_3848 glpX; fructose 1,6-bisphosphatase II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D EFER_2862 yggF; putative hexoseP phosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D EFER_3857 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D EFER_1345 pfkB; 6-phosphofructokinase II K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:efe00040]
D EFER_2341 ybhC; pectin methylesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D EFER_4383 uxaC; uronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D EFER_1553 uxaB; altronate oxidoreductase, NAD-dependent K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D EFER_4384 uxaA; altronate hydrolase K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D EFER_3030 uxuA; mannonate hydrolase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D EFER_1525 rspA; putative enolase/dehydratase K08323 rspA; mannonate dehydratase [EC:4.2.1.8]
D EFER_2872 putative 2-dehydro-3-deoxy-6-phosphogalactonate aldolase K08323 rspA; mannonate dehydratase [EC:4.2.1.8]
D EFER_1533 ydfI; putative mannonate dehydrogenase K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D EFER_3029 uxuB; D-mannonate oxidoreductase, NAD-binding K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D EFER_1526 rspB; putative dehydrogenase, starvation-sensing protein with NAD(P)-binding and GroES domains K08322 rspB; L-gulonate 5-dehydrogenase [EC:1.1.1.380]
D EFER_2111 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D EFER_1719 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D EFER_2126 galF; putative subunit with GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D EFER_3573 yiaK; 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
D EFER_3578 lyxK; L-xylulose kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D EFER_4249 ulaD; 3-keto-L-gulonate 6-phosphate decarboxylase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D EFER_3579 sgbH; 3-keto-L-gulonate 6-phosphate decarboxylase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D EFER_4250 ulaE; L-xylulose 5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D EFER_3580 sgbU; putative L-xylulose 5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D EFER_4251 ulaF; L-ribulose 5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D EFER_0070 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D EFER_3581 sgbE; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D EFER_3352 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D EFER_0071 araA; L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D EFER_0072 araB; L-ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16]
D EFER_2175 Xylulose kinase (Xylulokinase) K00854 xylB; xylulokinase [EC:2.7.1.17]
D EFER_3565 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D EFER_3566 xylA; D-xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D EFER_3867 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D EFER_3869 rhaD; rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D EFER_2176 D-arabinitol 4-dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D EFER_2180 Ribitol kinase K00875 rbtK; D-ribulokinase [EC:2.7.1.47]
D EFER_2179 Ribitol 2-dehydrogenase (RDH) K00039 rbtD; ribitol 2-dehydrogenase [EC:1.1.1.56]
C 00051 Fructose and mannose metabolism [PATH:efe00051]
D EFER_2630 mak; manno(fructo)kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D EFER_1424 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D EFER_2132 cpsG; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D EFER_2114 cpsG; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D EFER_2133 cpsB; mannose-1-phosphate guanyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D EFER_2115 Mannose-1-phosphate guanylyltransferase [GDP] (GDP-mannose pyrophosphorylase) (GMP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D EFER_2137 gmd; GDP-D-mannose dehydratase, NAD(P)-binding K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D EFER_2118 gmd; GDP-D-mannose dehydratase, NAD(P)-binding K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D EFER_2136 fcl; bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D EFER_2117 fcl; bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D EFER_3868 rhaA; L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14]
D EFER_3867 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D EFER_3869 rhaD; rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D EFER_1939 putative mannosyl-3-phosphoglycerate phosphatase (MPGP) K07026 E3.1.3.70; mannosyl-3-phosphoglycerate phosphatase [EC:3.1.3.70]
D EFER_3857 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D EFER_1345 pfkB; 6-phosphofructokinase II K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D EFER_4310 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D EFER_3848 glpX; fructose 1,6-bisphosphatase II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D EFER_2862 yggF; putative hexoseP phosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D EFER_3591 mtlD; mannitol-1-phosphate dehydrogenase, NAD(P)-binding K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D EFER_4082 sorbitol-6-phosphate 2-dehydrogenase K00068 srlD; sorbitol-6-phosphate 2-dehydrogenase [EC:1.1.1.140]
D EFER_2863 yggP; putative dehydrogenase K19956 sorE; L-sorbose 1-phosphate reductase [EC:1.1.1.-]
D EFER_4077 L-sorbose 1-phosphate reductase K19956 sorE; L-sorbose 1-phosphate reductase [EC:1.1.1.-]
D EFER_2255 fruK; fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D EFER_3566 xylA; D-xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D EFER_2176 D-arabinitol 4-dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D EFER_2182 fbaB; fructose-bisphosphate aldolase class I K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D EFER_2857 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D EFER_0431 putative triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D EFER_3854 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D EFER_4286 alsK; D-allose kinase (allokinase) K00881 alsK; allose kinase [EC:2.7.1.55]
D EFER_4280 rpiB; ribose 5-phosphate isomerase B/allose 6-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D EFER_0428 putative Galactose-6-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D EFER_4285 alsE; allulose-6-phosphate 3-epimerase K17195 alsE; D-allulose-6-phosphate 3-epimerase [EC:5.1.3.-]
D EFER_2254 fruA; fused fructose-specific PTS enzymes: IIB component; IIC components K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D EFER_1259 manX; fused mannose-specific PTS enzymes: IIA component; IIB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D EFER_1258 manY; mannose-specific enzyme IIC component of PTS K02795 manY; mannose PTS system EIIC component
D EFER_1257 manZ; mannose-specific enzyme IID component of PTS K02796 manZ; mannose PTS system EIID component
D EFER_2865 cmtB; putative mannitol-specific enzyme IIA component of PTS K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D EFER_2864 cmtA; fused mannitol-specific PTS enzymes: IIB component; IIC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D EFER_3590 mtlA; fused mannitol-specific PTS enzymes: IIA components; IIB components; IIC components K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D EFER_0876 yfbT; putative phosphatase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
D EFER_2173 putative phosphoglycolate phosphatase K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
D EFER_1340 yniC; putative phosphoglycolate phosphatase K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
D EFER_4081 sorbose-specific phosphotransferase enzyme IIA component (PTS system) K02812 sorF; sorbose PTS system EIIA component [EC:2.7.1.206]
D EFER_4080 sorbose-specific phosphotransferase enzyme IIB component (PTS system) K02813 sorB; sorbose PTS system EIIB component [EC:2.7.1.206]
D EFER_4079 sorbose permease IIC component (PTS system) K02814 sorA; sorbose PTS system EIIC component
D EFER_4078 sorbose permease IID component K02815 sorM; sorbose PTS system EIID component
C 00052 Galactose metabolism [PATH:efe00052]
D EFER_2353 galM; galactose-1-epimerase (mutarotase) K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D EFER_2352 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D EFER_2351 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D EFER_2350 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D EFER_1719 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D EFER_2126 galF; putative subunit with GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D EFER_2420 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D EFER_0780 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D EFER_2656 Beta-galactosidase (Lactase) K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D EFER_3471 putative phosphotransferase system enzyme subunit IIA K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D EFER_3472 putative phosphotransferase system enzyme IIB K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]
D EFER_3473 putative phosphotransferase system permease component IIC K02775 gatC; galactitol PTS system EIIC component
D EFER_3857 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D EFER_1345 pfkB; 6-phosphofructokinase II K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D EFER_4354 kbaY; tagatose 6-phosphate aldolase 1, kbaY subunit K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40]
D EFER_3476 putative aldolase K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40]
D EFER_4361 kbaZ; tagatose 6-phosphate aldolase 1, kbaZ subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D EFER_3987 dgoD; galactonate dehydratase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
D EFER_3650 acidic carbohydrate kinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D EFER_3989 dgoK; 2-oxo-3-deoxygalactonate kinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D EFER_3988 dgoA; 2-oxo-3-deoxygalactonate 6-phosphate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
D EFER_3651 phospho acidic carbohydrate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
D EFER_2622 malZ; maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D EFER_4357 putative phosphotransferase system enzyme subunit (N-acetyl-galactosamine / galactosamine PTS system enzyme IIA component) K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D EFER_4360 agaV; N-acetylgalactosamine-specific enzyme IIB component of PTS K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D EFER_4359 putative enzyme IIC component of PTS K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D EFER_4358 putative hexose/hexosamine family PTS permease IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D EFER_4356 agaA; N-acetylglucosamine-6-phosphate deacetylase (GlcNAc 6-P deacetylase) K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25]
D EFER_4355 agaS; tagatose-6-phosphate ketose/aldose isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
D EFER_4353 agaB; N-acetylgalactosamine-specific enzyme IIB component of PTS K10984 agaB; galactosamine PTS system EIIB component [EC:2.7.1.-]
D EFER_4352 agaC; N-acetylgalactosamine-specific enzyme IIC component of PTS K10985 agaC; galactosamine PTS system EIIC component
D EFER_4351 agaD; N-acetylgalactosamine-specific enzyme IID component of PTS K10986 agaD; galactosamine PTS system EIID component
C 00053 Ascorbate and aldarate metabolism [PATH:efe00053]
D EFER_2111 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D EFER_4248 ulaC; L-ascorbate-specific enzyme IIA component of PTS K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D EFER_0866 putative phosphotransferase enzyme IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D EFER_4247 ulaB; L-ascorbate-specific enzyme IIB component of PTS K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D EFER_0867 putative phosphotransferase transport system, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D EFER_4246 ulaA; L-ascorbate-specific enzyme IIC component of PTS K03475 ulaA; ascorbate PTS system EIIC component
D EFER_0868 putative phosphotransferase transport system, IIC component K03475 ulaA; ascorbate PTS system EIIC component
D EFER_4245 ulaG; putative L-ascorbate 6-phosphate lactonase K03476 ulaG; L-ascorbate 6-phosphate lactonase [EC:3.1.1.-]
D EFER_4249 ulaD; 3-keto-L-gulonate 6-phosphate decarboxylase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D EFER_3579 sgbH; 3-keto-L-gulonate 6-phosphate decarboxylase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D EFER_4250 ulaE; L-xylulose 5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D EFER_3580 sgbU; putative L-xylulose 5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D EFER_4251 ulaF; L-ribulose 5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D EFER_0070 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D EFER_3581 sgbE; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D EFER_3573 yiaK; 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
D EFER_3578 lyxK; L-xylulose kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D EFER_0276 gudD; (D)-glucarate dehydratase 1 K01706 gudD; glucarate dehydratase [EC:4.2.1.40]
D EFER_4366 garL; alpha-dehydro-beta-deoxy-D-glucarate aldolase K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20]
D EFER_4365 garD; (D)-galactarate dehydrogenase K01708 garD; galactarate dehydratase [EC:4.2.1.42]
D EFER_1473 putative mandelate racemase K20023 talrD-galrD; L-talarate/galactarate dehydratase [EC:4.2.1.156 4.2.1.42]
C 00500 Starch and sucrose metabolism [PATH:efe00500]
D EFER_2622 malZ; maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D EFER_1719 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D EFER_2126 galF; putative subunit with GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D EFER_2219 bglX; beta-D-glucoside glucohydrolase, periplasmic K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D EFER_3518 bcsA; cellulose synthase, catalytic subunit K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D EFER_1161 bcsA; cellulose synthase catalytic subunit [UDP-forming] K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D EFER_1331 chbA; N,N'-diacetylchitobiose-specific enzyme IIA component of PTS K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D EFER_3959 putative chitobiose/cellobiose phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D EFER_1329 chbB; N,N'-diacetylchitobiose-specific enzyme IIB component of PTS K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D EFER_3956 putative PTS subunit cellobiose/Chitosan phosphotransferase enzyme IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D EFER_1330 chbC; N,N'-diacetylchitobiose-specific enzyme IIC component of PTS K02761 celB; cellobiose PTS system EIIC component
D EFER_3957 putative PTS subunit, cellobiose/chitosan-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D EFER_1333 chbF; cryptic phospho-beta-glucosidase, NAD(P)-binding K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D EFER_4019 bglB; cryptic phospho-beta-glucosidase B K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D EFER_0361 ascB; cryptic 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D EFER_2837 bglA; 6-phospho-beta-glucosidase A K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D EFER_3958 putative glycosyl phosphatase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D EFER_3407 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D EFER_3406 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D EFER_3409 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D EFER_3386 malP; maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D EFER_3405 glgP; glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D EFER_3408 glgX; glycogen debranching enzyme K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D EFER_1166 amyA; cytoplasmic alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1]
D EFER_3569 malS; alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1]
D EFER_3385 malQ; 4-alpha-glucanotransferase (amylomaltase) K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D EFER_0755 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D EFER_3978 putative PTS system alpha-glucoside-specific EIICB component K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D EFER_3977 6-phospho-glucosidase K01232 glvA; maltose-6'-phosphate glucosidase [EC:3.2.1.122]
D EFER_1127 otsA; trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D EFER_1126 otsB; trehalose-6-phosphate phosphatase, biosynthetic K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D EFER_1759 treA; periplasmic trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
D EFER_3502 treF; cytoplasmic trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
D EFER_4322 treB; fused trehalose(maltose)-specific PTS enzyme: IIB component; IIC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D EFER_4321 treC; trehalose-6-P hydrolase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D EFER_2420 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D EFER_0780 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D EFER_4117 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D EFER_2630 mak; manno(fructo)kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:efe00520]
D EFER_1821 nagZ; beta N-acetyl-glucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D EFER_0755 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D EFER_2430 nagE; fused N-acetyl glucosamine specific PTS enzymes: IIC component; IIB component; IIA component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D EFER_1283 ycfX; N-acetyl-D-glucosamine kinase K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D EFER_2432 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D EFER_2431 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D EFER_2630 mak; manno(fructo)kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D EFER_4027 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D EFER_3153 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D EFER_4028 glmU; fused N-acetyl glucosamine-1-phosphate uridyltransferase; glucosamine-1-phosphate acetyl transferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D EFER_0743 murP; putative fused PTS enzymes: IIB component; IIC component K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D EFER_0744 yfeU; putative PTS component; possibly regulatory K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D EFER_1403 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D EFER_3166 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D EFER_3779 murB; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D EFER_3193 nanK; putative N-acetylmannosamine kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D EFER_3194 nanE; putative N-acetylmannosamine-6-P epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D EFER_3196 nanA; N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D EFER_3718 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D EFER_3717 rffD; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D EFER_0914 yfbG; fused UDP-L-Ara4N formyltransferase; UDP-GlcA C-4'-decarboxylase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D EFER_0916 yfbE; uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D EFER_0915 yfbF; undecaprenyl phosphate-L-Ara4FN transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D EFER_0913 yfbH; conserved hypothetical protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D EFER_1826 ptsG; fused glucose-specific PTS enzymes: IIB component; IIC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D EFER_0780 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D EFER_2420 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D EFER_1719 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D EFER_2126 galF; putative subunit with GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D EFER_2111 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D EFER_2352 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D EFER_2351 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D EFER_2350 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D EFER_1259 manX; fused mannose-specific PTS enzymes: IIA component; IIB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D EFER_1258 manY; mannose-specific enzyme IIC component of PTS K02795 manY; mannose PTS system EIIC component
D EFER_1257 manZ; mannose-specific enzyme IID component of PTS K02796 manZ; mannose PTS system EIID component
D EFER_4117 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D EFER_1424 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D EFER_2132 cpsG; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D EFER_2114 cpsG; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D EFER_2133 cpsB; mannose-1-phosphate guanyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D EFER_2115 Mannose-1-phosphate guanylyltransferase [GDP] (GDP-mannose pyrophosphorylase) (GMP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D EFER_2137 gmd; GDP-D-mannose dehydratase, NAD(P)-binding K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D EFER_2118 gmd; GDP-D-mannose dehydratase, NAD(P)-binding K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D EFER_2136 fcl; bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D EFER_2117 fcl; bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D EFER_3407 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:efe00620]
D EFER_4296 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D EFER_1622 ydbK; putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D EFER_0135 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D EFER_0136 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D EFER_4150 putative dihydrolipoyl dehydrogenase, E3 component (lpd-like) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_0137 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_1048 pflB; pyruvate formate lyase I K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D EFER_1714 adhE; fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D EFER_0724 eutE; putative aldehyde dehydrogenase, ethanolamine utilization protein K04021 eutE; aldehyde dehydrogenase
D EFER_1495 adhP; alcohol dehydrogenase, 1-propanol preferring K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D EFER_3583 yiaY; Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D EFER_3870 alcohol dehydrogenase in rhamnose degradation pathway K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D EFER_1582 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D EFER_3111 yjgB; putative alcohol dehydrogenase, Zn-dependent and NAD(P)-binding K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183]
D EFER_0726 eutG; putative alcohol dehydrogenase in ethanolamine utilization; ethanolaminosome K04022 eutG; alcohol dehydrogenase
D EFER_0872 ackA; acetate kinase A and propionate kinase 2 K00925 ackA; acetate kinase [EC:2.7.2.1]
D EFER_0871 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D EFER_1998 conserved hypothetical protein, similar to pduL K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D EFER_0721 eutI; putative phosphotransacetylase subunit K04020 eutD; phosphotransacetylase
D EFER_1376 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D EFER_1218 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D EFER_0208 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D EFER_3234 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D EFER_3235 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D EFER_0847 accD; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D EFER_1105 yccX; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D EFER_3582 aldB; aldehyde dehydrogenase B K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D EFER_4261 putative CoA transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
D EFER_3599 lldD; L-lactate dehydrogenase, FMN-linked K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D EFER_4154 Putative malate/L-lactate dehydrogenases K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D EFER_1014 poxB; pyruvate dehydrogenase (pyruvate oxidase), thiamin-dependent, FAD-binding K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D EFER_1618 ldhA; fermentative D-lactate dehydrogenase, NAD-dependent K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D EFER_2220 dld; D-lactate dehydrogenase, FAD-binding, NADH independent K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D EFER_1393 gloA; glyoxalase I, Ni-dependent K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D EFER_0241 gloB; putative hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D EFER_1071 ycbL; putative metal-binding hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D EFER_1951 hchA; Hsp31 molecular chaperone K05523 hchA; D-lactate dehydratase / protein deglycase [EC:4.2.1.130 3.5.1.124]
D EFER_1897 ycdW; 2-ketoacid reductase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D EFER_3554 tiaE; 2-oxo-carboxylic acid reductase (glyoxalate reductase) (2-ketoaldonate reductase) K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D EFER_1496 sfcA; malate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D EFER_0716 maeB; putative fused malic enzyme oxidoreductase; putative phosphotransacetylase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D EFER_0029 oadA; Oxaloacetate decarboxylase alpha chain K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D EFER_3127 Putative carboxybiotin decarboxylase subunit of malonate decarboxylase K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D EFER_0028 oadB; Oxalacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D EFER_0030 oadG; Oxaloacetate decarboxylase gamma chain K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D EFER_3213 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D EFER_0950 mqo; malate dehydrogenase, FAD/NAD(P)-binding domain K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D EFER_2382 Fumarate hydratase class I, beta subunit, aerobic (Fumarase) K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D EFER_4176 fumB; anaerobic class I fumarate hydratase (fumarase B) K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D EFER_1425 fumA; fumarate hydratase (fumarase A), aerobic Class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D EFER_1426 fumC; fumarate hydratase (fumarase C),aerobic Class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D EFER_1377 ydhZ; conserved hypothetical protein K01675 fumD; fumarate hydratase D [EC:4.2.1.2]
D EFER_2861 yggD; putative DNA-binding transcriptional regulator K01774 fumE; fumarate hydratase E [EC:4.2.1.2]
D EFER_4208 frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D EFER_4207 frdB; fumarate reductase (anaerobic), Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D EFER_4206 frdC; fumarate reductase (anaerobic), membrane anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D EFER_4205 frdD; fumarate reductase (anaerobic), membrane anchor subunit K00247 frdD; succinate dehydrogenase subunit D
D EFER_3807 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D EFER_3369 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D EFER_1362 pps; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D EFER_4067 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D EFER_0935 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_2775 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_0096 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:efe00630]
D EFER_4068 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D EFER_4296 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D EFER_4067 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D EFER_3213 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D EFER_2394 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D EFER_1678 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D EFER_3665 Putative aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D EFER_3667 Conserved Hypothetical protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D EFER_0139 acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D EFER_3669 Putative Aconitate hydratase 2 (Citrate hydro-lyase 2) (Aconitase 2) K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D EFER_0935 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_2775 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_2377 Methylaspartate mutase E chain (Glutamate mutase epsilon subunit) K19268 glmE; methylaspartate mutase epsilon subunit [EC:5.4.99.1]
D EFER_2375 Methylaspartate mutase S chain (Glutamate mutase sigma subunit) K01846 glmS; methylaspartate mutase sigma subunit [EC:5.4.99.1]
D EFER_2378 Methylaspartate ammonia-lyase (Beta-methylaspartase) K04835 mal; methylaspartate ammonia-lyase [EC:4.3.1.2]
D EFER_1335 katE; hydroperoxidase HPII(III) (catalase) K03781 katE; catalase [EC:1.11.1.6]
D EFER_1897 ycdW; 2-ketoacid reductase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D EFER_3554 tiaE; 2-oxo-carboxylic acid reductase (glyoxalate reductase) (2-ketoaldonate reductase) K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D EFER_3351 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D EFER_3903 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D EFER_0634 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D EFER_3825 glyAB; Serine hydroxymethyltransferase 2 (Serine methylase 2) (SHMT 2) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D EFER_2839 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D EFER_2841 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D EFER_4150 putative dihydrolipoyl dehydrogenase, E3 component (lpd-like) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_0137 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_2840 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
D EFER_4367 garR; tartronate semialdehyde reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D EFER_0277 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D EFER_3209 ttdA; L(+)-tartrate dehydratase alpha subunit K03779 ttdA; L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32]
D EFER_3208 L(+)-tartrate dehydratase beta subunit K03780 ttdB; L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32]
D EFER_1223 eda; multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D EFER_3882 fdoG; formate dehydrogenase-O, large subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D EFER_3884 fdoH; formate dehydrogenase-O, Fe-S subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D EFER_3885 fdoI; formate dehydrogenase-O, cytochrome b556 subunit K00127 fdoI; formate dehydrogenase subunit gamma
D EFER_1723 purU; formyltetrahydrofolate hydrolase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:efe00640]
D EFER_4296 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D EFER_2657 prpE; propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D EFER_4261 putative CoA transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
D EFER_0872 ackA; acetate kinase A and propionate kinase 2 K00925 ackA; acetate kinase [EC:2.7.2.1]
D EFER_2027 putative acetate/propionate kinase pduW K19697 pduW; propionate kinase [EC:2.7.2.15]
D EFER_0871 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D EFER_1998 conserved hypothetical protein, similar to pduL K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D EFER_2017 conserved hypothetical protein, putative Propanediol utilization pduL K13923 pduL; phosphate propanoyltransferase [EC:2.3.1.222]
D EFER_4150 putative dihydrolipoyl dehydrogenase, E3 component (lpd-like) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_0137 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_1048 pflB; pyruvate formate lyase I K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D EFER_3231 yhdH; putative oxidoreductase, Zn-dependent and NAD(P)-binding K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D EFER_1603 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D EFER_3635 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D EFER_0823 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D EFER_0208 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D EFER_3234 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D EFER_3235 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D EFER_0847 accD; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D EFER_0410 gabT; 4-aminobutyrate aminotransferase, PLP-dependent K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D EFER_2385 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D EFER_4151 sucC; Succinyl-CoA synthetase beta chain (SCS-beta) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D EFER_2384 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D EFER_4152 sucD; Succinyl-CoA synthetase alpha chain (SCS-alpha) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D EFER_2659 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D EFER_2658 prpD; 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D EFER_0139 acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D EFER_3669 Putative Aconitate hydratase 2 (Citrate hydro-lyase 2) (Aconitase 2) K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D EFER_2660 prpB; 2-methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D EFER_4154 Putative malate/L-lactate dehydrogenases K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D EFER_1100 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D EFER_2951 yqhD; alcohol dehydrogenase, NAD(P)-dependent K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
D EFER_3817 gldA; glycerol dehydrogenase, NAD K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D EFER_2010 pduC; Glycerol dehydratase large subunit K01699 pduC; propanediol dehydratase large subunit [EC:4.2.1.28]
D EFER_2011 PduD; Propanediol utilization: diol dehydratase, medium subunit K13919 pduD; propanediol dehydratase medium subunit [EC:4.2.1.28]
D EFER_2012 pduE; Propanediol utilization diol dehydratase, small subunit K13920 pduE; propanediol dehydratase small subunit [EC:4.2.1.28]
D EFER_2022 putative Propanediol utilization propanol dehydrogenase pduQ K13921 pduQ; 1-propanol dehydrogenase
D EFER_2021 putative CoA-dependent proprionaldehyde dehydrogenase pduP K13922 pduP; propionaldehyde dehydrogenase [EC:1.2.1.87]
C 00650 Butanoate metabolism [PATH:efe00650]
D EFER_0935 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_2775 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_1601 paaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D EFER_3635 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D EFER_0823 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D EFER_1603 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D EFER_4262 putative acyl-CoA hydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D EFER_0938 atoD; acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D EFER_0937 atoA; acetyl-CoA:acetoacetyl-CoA transferase, beta subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
D EFER_1714 adhE; fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D EFER_3127 Putative carboxybiotin decarboxylase subunit of malonate decarboxylase K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D EFER_0028 oadB; Oxalacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D EFER_2389 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D EFER_2388 sdhB; succinate dehydrogenase, FeS subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D EFER_2391 sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D EFER_2390 sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D EFER_4208 frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D EFER_4207 frdB; fumarate reductase (anaerobic), Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D EFER_4206 frdC; fumarate reductase (anaerobic), membrane anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D EFER_4205 frdD; fumarate reductase (anaerobic), membrane anchor subunit K00247 frdD; succinate dehydrogenase subunit D
D EFER_1575 gadB; glutamate decarboxylase B, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D EFER_2817 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D EFER_0410 gabT; 4-aminobutyrate aminotransferase, PLP-dependent K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D EFER_0411 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D EFER_1549 yneI; putative aldehyde dehydrogenase K08324 sad; succinate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.24]
D EFER_1048 pflB; pyruvate formate lyase I K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D EFER_1622 ydbK; putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D EFER_0099 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D EFER_3968 ilvB; acetolactate synthase I, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D EFER_3734 ilvG; Acetolactate synthase isozyme II large subunit (ALS-II) (Acetohydroxy-acid synthase II large subunit) (AHAS-II) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D EFER_0100 ilvH; acetolactate synthase III, thiamin-dependent, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D EFER_3967 ilvN; acetolactate synthase I, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D EFER_3733 ilvM; acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:efe00660]
D EFER_0099 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D EFER_3968 ilvB; acetolactate synthase I, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D EFER_3734 ilvG; Acetolactate synthase isozyme II large subunit (ALS-II) (Acetohydroxy-acid synthase II large subunit) (AHAS-II) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D EFER_0100 ilvH; acetolactate synthase III, thiamin-dependent, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D EFER_3967 ilvN; acetolactate synthase I, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D EFER_3733 ilvM; acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D EFER_2385 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D EFER_4151 sucC; Succinyl-CoA synthetase beta chain (SCS-beta) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D EFER_2384 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D EFER_4152 sucD; Succinyl-CoA synthetase alpha chain (SCS-alpha) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D EFER_2378 Methylaspartate ammonia-lyase (Beta-methylaspartase) K04835 mal; methylaspartate ammonia-lyase [EC:4.3.1.2]
D EFER_2377 Methylaspartate mutase E chain (Glutamate mutase epsilon subunit) K19268 glmE; methylaspartate mutase epsilon subunit [EC:5.4.99.1]
D EFER_2375 Methylaspartate mutase S chain (Glutamate mutase sigma subunit) K01846 glmS; methylaspartate mutase sigma subunit [EC:5.4.99.1]
D EFER_0094 leuC; 3-isopropylmalate isomerase subunit, dehydratase component K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D EFER_0093 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D EFER_0095 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:efe00562]
D EFER_0639 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D EFER_3043 Periplasmic appA protein precursor [Includes: Phosphoanhydride phosphohydrolase (pH 2.5 acid phosphatase) (AP); 4-phytase] K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D EFER_0431 putative triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D EFER_3854 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:efe00190]
D EFER_0882 nuoA; NADH:ubiquinone oxidoreductase, membrane subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D EFER_0883 nuoB; NADH:ubiquinone oxidoreductase, chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D EFER_0884 nuoC; NADH:ubiquinone oxidoreductase, chain C,D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D EFER_0885 nuoE; NADH:ubiquinone oxidoreductase, chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D EFER_0886 nuoF; NADH:ubiquinone oxidoreductase, chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D EFER_0887 nuoG; NADH:ubiquinone oxidoreductase, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D EFER_0888 nuoH; NADH:ubiquinone oxidoreductase, membrane subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D EFER_0889 nuoI; NADH:ubiquinone oxidoreductase, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D EFER_0890 nuoJ; NADH:ubiquinone oxidoreductase, membrane subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D EFER_0891 nuoK; NADH:ubiquinone oxidoreductase, membrane subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D EFER_0892 nuoL; NADH:ubiquinone oxidoreductase, membrane subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D EFER_0893 nuoM; NADH:ubiquinone oxidoreductase, membrane subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D EFER_0894 nuoN; NADH:ubiquinone oxidoreductase, membrane subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D EFER_1819 ndh; respiratory NADH dehydrogenase 2/cupric reductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D EFER_2389 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D EFER_2388 sdhB; succinate dehydrogenase, FeS subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D EFER_2391 sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D EFER_2390 sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D EFER_4208 frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D EFER_4207 frdB; fumarate reductase (anaerobic), Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D EFER_4206 frdC; fumarate reductase (anaerobic), membrane anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D EFER_4205 frdD; fumarate reductase (anaerobic), membrane anchor subunit K00247 frdD; succinate dehydrogenase subunit D
D EFER_2589 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D EFER_2588 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D EFER_2587 cyoC; cytochrome o ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D EFER_2586 cyoB; cytochrome o ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D EFER_2585 cyoA; cytochrome o ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D EFER_2371 cydA; cytochrome d terminal oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D EFER_1185 appC; cytochrome bd-II oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D EFER_2370 cydB; cytochrome d terminal oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D EFER_1186 appB; cytochrome bd-II oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D EFER_4033 atpA; F1 sector of membrane-bound ATP synthase, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D EFER_4031 atpD; F1 sector of membrane-bound ATP synthase, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D EFER_4032 atpG; F1 sector of membrane-bound ATP synthase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D EFER_4034 atpH; F1 sector of membrane-bound ATP synthase, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D EFER_4030 atpC; F1 sector of membrane-bound ATP synthase, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D EFER_4037 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D EFER_4035 atpF; F0 sector of membrane-bound ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D EFER_4036 atpE; F0 sector of membrane-bound ATP synthase, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D EFER_4305 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D EFER_0675 ppk; polyphosphate kinase, component of RNA degradosome K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:efe00680]
D EFER_1582 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D EFER_2239 frmC; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D EFER_3882 fdoG; formate dehydrogenase-O, large subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D EFER_3884 fdoH; formate dehydrogenase-O, Fe-S subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D EFER_3885 fdoI; formate dehydrogenase-O, cytochrome b556 subunit K00127 fdoI; formate dehydrogenase subunit gamma
D EFER_4292 fdhF; formate dehydrogenase-H, selenopolypeptide subunit K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-]
D EFER_0634 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D EFER_3825 glyAB; Serine hydroxymethyltransferase 2 (Serine methylase 2) (SHMT 2) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D EFER_0285 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D EFER_3807 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D EFER_3213 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D EFER_2182 fbaB; fructose-bisphosphate aldolase class I K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D EFER_2857 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D EFER_4310 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D EFER_3848 glpX; fructose 1,6-bisphosphatase II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D EFER_2862 yggF; putative hexoseP phosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D EFER_3857 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D EFER_1345 pfkB; 6-phosphofructokinase II K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D EFER_1192 torA; trimethylamine N-oxide (TMAO) reductase I, catalytic subunit K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D EFER_1191 torC; trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D EFER_1193 torD; chaperone involved in maturation of TorA subunit of trimethylamine N-oxide reductase system I K03533 torD; TorA specific chaperone
D EFER_0872 ackA; acetate kinase A and propionate kinase 2 K00925 ackA; acetate kinase [EC:2.7.2.1]
D EFER_0871 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D EFER_4296 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D EFER_1362 pps; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D EFER_2354 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D EFER_4494 ytjC; phosphoglyceromutase 2, co-factor independent K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D EFER_3606 gpmI; phosphoglycero mutase III, cofactor-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D EFER_2850 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D EFER_1052 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D EFER_4485 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:efe00910]
D EFER_1737 narK; nitrate/nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D EFER_1736 narG; nitrate reductase 1, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D EFER_1735 narH; nitrate reductase 1, beta (Fe-S) subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D EFER_1733 narI; nitrate reductase 1, gamma (cytochrome b(NR)) subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D EFER_2296 napA; nitrate reductase, periplasmic, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D EFER_2293 napB; nitrate reductase, small, cytochrome C550 subunit, periplasmic K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D EFER_3337 nirB; nitrite reductase, large subunit, NAD(P) H-binding K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D EFER_3338 nirD; nitrite reductase, NAD(P)H-binding, small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D EFER_1018 hcp; hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D EFER_1304 gdhA; glutamate dehydrogenase, NADP-specific K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D EFER_3903 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D EFER_3189 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D EFER_3190 gltD; glutamate synthase, 4Fe-4S protein, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D EFER_4331 arcC; Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D EFER_0561 ybcF; putative carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D EFER_0421 yahI; putative carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D EFER_0147 can; carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:efe00920]
D EFER_0748 cysP; thiosulfate transporter subunit; periplasmic-binding component of ABC superfamily K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D EFER_3856 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D EFER_0749 cysU; sulfate/thiosulfate transporter subunit; membrane component of ABC superfamily K02046 cysU; sulfate/thiosulfate transport system permease protein
D EFER_0750 cysW; sulfate/thiosulfate transporter subunit; membrane component of ABC superfamily K02047 cysW; sulfate/thiosulfate transport system permease protein
D EFER_0751 cysA; sulfate/thiosulfate transporter subunit; ATP-binding component of ABC superfamily K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D EFER_2654 tauA; taurine transporter subunit; periplasmic-binding component of ABC superfamily K15551 tauA; taurine transport system substrate-binding protein
D EFER_2652 tauC; taurine transporter subunit; membrane component of ABC superfamily K15552 tauC; taurine transport system permease protein
D EFER_2653 tauB; taurine transporter subunit; ATP-binding component of ABC superfamily K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D EFER_2651 tauD; taurine dioxygenase, 2-oxoglutarate-dependent K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D EFER_1080 ssuA; alkanesulfonate transporter subunit; periplasmic-binding component of ABC superfamily K15553 ssuA; sulfonate transport system substrate-binding protein
D EFER_1078 ssuC; alkanesulfonate transporter subunit; membrane component of ABC superfamily K15554 ssuC; sulfonate transport system permease protein
D EFER_1077 ssuB; alkanesulfonate transporter subunit; ATP-binding component of ABC superfamily K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D EFER_1079 ssuD; alkanesulfonate monooxygenase, FMNH(2)-dependent K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D EFER_1081 ssuE; NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D EFER_0316 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D EFER_0315 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D EFER_0317 cysC; adenosine 5'-phosphosulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D EFER_4274 cysQ; PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D EFER_0300 cysH; 3'-phosphoadenosine 5'-phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D EFER_0298 cysJ; sulfite reductase, alpha subunit, flavoprotein K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D EFER_0299 cysI; sulfite reductase, beta subunit, NAD(P)-binding, heme-binding K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D EFER_0651 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D EFER_3393 glpE; thiosulfate:cyanide sulfurtransferase (rhodanese) K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D EFER_3601 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D EFER_0759 cysK; cysteine synthase A, O-acetylserine sulfhydrolase A subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D EFER_4066 metA; homoserine transsuccinylase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D EFER_3832 metB; cystathionine gamma-synthase, PLP-dependent K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D EFER_4181 dmsA; anaerobic dimethyl sulfoxide reductase chain A precursor (DMSO reductase) K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D EFER_4182 putative anaerobic reductase chain B (DMSO reductase iron-sulfur subunit) K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D EFER_4183 putative anaerobic reductase, subunit C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:efe00061]
D EFER_0208 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D EFER_3234 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D EFER_3235 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D EFER_0847 accD; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D EFER_1833 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
D EFER_3454 putative acyl carrier protein 2 K02078 acpP; acyl carrier protein
D EFER_3453 putative acyl carrier protein component K02078 acpP; acyl carrier protein
D EFER_1835 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D EFER_1836 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D EFER_1732 putative 3-oxoacyl-[acyl-carrier-protein] synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D EFER_3463 putative 3-oxoacyl-[acyl-carrier-protein] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D EFER_0840 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D EFER_1832 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D EFER_3466 putative beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D EFER_1834 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D EFER_3465 putative 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D EFER_0800 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D EFER_1091 fabA; beta-hydroxydecanoyl thioester dehydrase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D EFER_0203 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D EFER_1665 fabI; enoyl-[acyl-carrier-protein] reductase, NADH-dependent K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D EFER_1275 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:efe00071]
D EFER_0935 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_2775 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_3636 fadA; 3-ketoacyl-CoA thiolase (thiolase I) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D EFER_0822 yfcY; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D EFER_3635 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D EFER_0823 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D EFER_1603 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D EFER_0247 fadE; acyl coenzyme A dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D EFER_1275 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D EFER_2770 aas; fused 2-acylglycerophospho-ethanolamine acyl transferase; acyl-acyl carrier protein synthetase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D EFER_1582 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D EFER_1714 adhE; fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D EFER_1495 adhP; alcohol dehydrogenase, 1-propanol preferring K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D EFER_3583 yiaY; Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D EFER_3870 alcohol dehydrogenase in rhamnose degradation pathway K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:efe00561]
D EFER_0277 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D EFER_3817 gldA; glycerol dehydrogenase, NAD K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D EFER_3847 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D EFER_2517 Glycerol kinase 2 (ATP:glycerol 3-phosphotransferase 2) (Glycerokinase 2) (GK 2) K00864 glpK; glycerol kinase [EC:2.7.1.30]
D EFER_4132 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D EFER_1837 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D EFER_3004 plsY; 1-acyl glycerol-3-phosphate synthetase component K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D EFER_2964 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D EFER_4133 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:efe00564]
D EFER_3602 gpsA; glycerol-3-phosphate dehydrogenase (NAD+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D EFER_3394 glpD; sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D EFER_0925 glpA; sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)-binding K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D EFER_0924 glpB; sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D EFER_0923 glpC; sn-glycerol-3-phosphate dehydrogenase (anaerobic), small subunit K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D EFER_4132 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D EFER_3004 plsY; 1-acyl glycerol-3-phosphate synthetase component K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D EFER_2964 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D EFER_4133 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D EFER_3681 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D EFER_3675 pldB; lysophospholipase L(2) K01048 pldB; lysophospholipase [EC:3.1.1.5]
D EFER_0927 glpQ; periplasmic glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D EFER_3421 ugpQ; glycerophosphodiester phosphodiesterase, cytosolic K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D EFER_2770 aas; fused 2-acylglycerophospho-ethanolamine acyl transferase; acyl-acyl carrier protein synthetase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D EFER_0728 eutA; reactivating factor for ethanolamine ammonia lyase K04019 eutA; ethanolamine utilization protein EutA
D EFER_0729 eutB; ethanolamine ammonia-lyase, large subunit, heavy chain K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7]
D EFER_0730 eutC; ethanolamine ammonia-lyase, small subunit (light chain) K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7]
D EFER_3855 cdh; CDP-diacylglycerol phosphotidylhydrolase K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26]
D EFER_1592 ynbB; putative membrane associated CTP-phosphosubstrate transferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D EFER_0197 cdsA; CDP-diglyceride synthase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D EFER_0488 pssA; phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D EFER_4214 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D EFER_1182 pgsA; phosphatidylglycerophosphate synthetase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D EFER_2607 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D EFER_1676 pgpB; phosphatidylglycerophosphatase B K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
D EFER_0515 yfhB; conserved hypothetical protein K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D EFER_1705 cls; cardiolipin synthase 1 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D EFER_2319 ybhO; cardiolipin synthase 2 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D EFER_1883 ymdC; putative hydrolase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:efe00565]
D EFER_3681 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism
D EFER_2656 Beta-galactosidase (Lactase) K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
C 00590 Arachidonic acid metabolism
D EFER_3681 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism [PATH:efe00591]
D EFER_3681 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D EFER_1726 putative Linoleoyl-CoA desaturase K00508 E1.14.19.3; linoleoyl-CoA desaturase [EC:1.14.19.3]
C 00592 alpha-Linolenic acid metabolism [PATH:efe00592]
D EFER_3681 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D EFER_3636 fadA; 3-ketoacyl-CoA thiolase (thiolase I) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D EFER_0822 yfcY; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:efe01040]
D EFER_0552 tesA; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D EFER_2565 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D EFER_1701 yciA; putative hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:efe00230]
D EFER_2975 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D EFER_3363 nudE; ADP-ribose diphosphatase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D EFER_4480 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D EFER_3346 yhfW; putative mutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D EFER_2420 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D EFER_1754 prsA; phosphoribosylpyrophosphate synthase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D EFER_0851 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D EFER_3749 purD; phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D EFER_0676 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D EFER_1224 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D EFER_0518 purL; phosphoribosylformyl-glycineamide synthetase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D EFER_0677 purM; phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D EFER_0564 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D EFER_0700 purC; phosphoribosylaminoimidazole-succinocarboxamide synthetase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D EFER_1799 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D EFER_3748 purH; fused IMP cyclohydrolase; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D EFER_2548 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D EFER_0532 ushA; bifunctional UDP-sugar hydrolase and 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D EFER_0324 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D EFER_2434 nagD; NMP phosphatase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D EFER_3365 yrfG; putative hydrolase K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D EFER_0527 gsk; inosine/guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73]
D EFER_0767 xapA; purine nucleoside phosphorylase II K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D EFER_4481 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D EFER_2632 yaiE; conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D EFER_0474 yfiH; conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D EFER_0146 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D EFER_0667 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D EFER_0654 ndk; multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D EFER_4493 yjjX; thiamin metabolism associated protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D EFER_2893 yggV; dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D EFER_2740 gpt; guanine-hypoxanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D EFER_2821 yagR; putative xanthine dehydrogenase, molybdenum binding subunit K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
D EFER_2820 yagS; putative xanthine dehydrogenase yagS, FAD binding subunit K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
D EFER_2819 yagT; putative xanthine dehydrogenase, iron-sulfur binding subunit K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit
D EFER_0668 guaA; GMP synthetase (glutamine aminotransferase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D EFER_0125 guaC; GMP reductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D EFER_3940 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D EFER_0931 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D EFER_0395 nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D EFER_0930 nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D EFER_0394 nrdF; ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D EFER_4320 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D EFER_0183 dgt; deoxyguanosine triphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D EFER_0878 yfbR; deoxyribonucleoside 5'-monophosphatase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D EFER_4418 yfdR; conserved hypothetical protein; CPS-53 (KpLE1) prophage K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D EFER_0575 yfdR; conserved hypothetical protein; CPS-53 (KpLE1) prophage K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D EFER_3942 spoT; bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D EFER_0674 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D EFER_3725 gpp; guanosine pentaphosphatase/exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D EFER_0280 relA; (p)ppGpp synthetase I/GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D EFER_3698 cyaA; adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D EFER_4230 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D EFER_1420 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D EFER_1983 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D EFER_0265 ygdH; conserved hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D EFER_3962 ade; cryptic adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2]
D EFER_4273 cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D EFER_0523 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D EFER_0283 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D EFER_2973 cpdA; cyclic 3',5'-adenosine monophosphate phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D EFER_0060 apaH; diadenosine tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D EFER_0317 cysC; adenosine 5'-phosphosulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D EFER_0316 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D EFER_0315 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D EFER_4331 arcC; Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D EFER_0561 ybcF; putative carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D EFER_0421 yahI; putative carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:efe00240]
D EFER_0041 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D EFER_0040 carA; carbamoyl phosphate synthetase small subunit, glutamine amidotransferase K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D EFER_4327 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D EFER_4326 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D EFER_1867 pyrC; dihydro-orotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D EFER_1082 pyrD; dihydro-orotate oxidase, FMN-linked K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D EFER_3934 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D EFER_1673 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D EFER_0193 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D EFER_0654 ndk; multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D EFER_0283 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D EFER_3225 yhdE; putative septum formation protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D EFER_4393 ygjP; putative metal dependent hydrolase K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D EFER_0284 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D EFER_1054 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D EFER_1306 nudG; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase K08320 nudG; (d)CTP diphosphatase [EC:3.6.1.65]
D EFER_2152 udk; uridine/cytidine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D EFER_0532 ushA; bifunctional UDP-sugar hydrolase and 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D EFER_0324 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D EFER_2434 nagD; NMP phosphatase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D EFER_4415 yjjG; dUMP phosphatase K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D EFER_3655 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D EFER_2632 yaiE; conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D EFER_0678 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D EFER_4273 cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D EFER_2252 yeiC; putative kinase K16328 psuK; pseudouridine kinase [EC:2.7.1.83]
D EFER_2251 yeiN; conserved hypothetical protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D EFER_2248 rihB; ribonucleoside hydrolase 2 K10213 rihB; ribosylpyrimidine nucleosidase [EC:3.2.2.8]
D EFER_2452 rihA; ribonucleoside hydrolase 1 K01250 rihA; pyrimidine-specific ribonucleoside hydrolase [EC:3.2.2.-]
D EFER_0023 rihC; ribonucleoside hydrolase 3 K12700 rihC; non-specific riboncleoside hydrolase [EC:3.2.2.-]
D EFER_0265 ygdH; conserved hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D EFER_2228 cdd; cytidine/deoxycytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D EFER_2785 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D EFER_4320 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D EFER_2151 dcd; 2'-deoxycytidine 5'-triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D EFER_0931 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D EFER_0395 nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D EFER_0930 nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D EFER_0394 nrdF; ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D EFER_0878 yfbR; deoxyribonucleoside 5'-monophosphatase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D EFER_4418 yfdR; conserved hypothetical protein; CPS-53 (KpLE1) prophage K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D EFER_0575 yfdR; conserved hypothetical protein; CPS-53 (KpLE1) prophage K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89]
D EFER_1829 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D EFER_3931 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D EFER_4479 deoA; thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D EFER_1717 tdk; thymidine kinase/deoxyuridine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D EFER_2760 thyA; thymidylate synthetase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D EFER_2231 yeiT; putative Fe-S cluster containing oxidoreductase subunit K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D EFER_2232 yeiA; putative oxidoreductase subunit K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D EFER_0802 putative flavin:NADH reductase ycdH K09024 rutF; flavin reductase [EC:1.5.1.-]
D EFER_1536 ydfG; L-allo-threonine dehydrogenase, NAD(P)-binding K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:efe00250]
D EFER_1072 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D EFER_0499 nadB; quinolinate synthase, L-aspartate oxidase (B protein) subunit K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D EFER_1297 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D EFER_2899 ansB; periplasmic L-asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D EFER_4043 asnA; asparagine synthetase A K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D EFER_2435 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D EFER_0245 yafV; putative C-N hydrolase family amidase K13566 NIT2; omega-amidase [EC:3.5.1.3]
D EFER_0879 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D EFER_4191 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D EFER_3150 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D EFER_3803 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D EFER_4230 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D EFER_1799 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D EFER_4327 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D EFER_4326 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D EFER_1575 gadB; glutamate decarboxylase B, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D EFER_2817 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D EFER_0410 gabT; 4-aminobutyrate aminotransferase, PLP-dependent K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D EFER_0411 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D EFER_1549 yneI; putative aldehyde dehydrogenase K08324 sad; succinate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.24]
D EFER_3189 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D EFER_3190 gltD; glutamate synthase, 4Fe-4S protein, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D EFER_1304 gdhA; glutamate dehydrogenase, NADP-specific K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D EFER_1913 putA; fused DNA-binding transcriptional regulator; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D EFER_3903 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D EFER_0041 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D EFER_0040 carA; carbamoyl phosphate synthetase small subunit, glutamine amidotransferase K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D EFER_1550 yneH; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D EFER_2818 ybaS; amidase, possibly glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D EFER_4027 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D EFER_0851 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:efe00260]
D EFER_4115 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D EFER_0001 thrA; fused aspartokinase I; homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D EFER_3831 metL; fused aspartokinase II; homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D EFER_3410 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D EFER_0002 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D EFER_0003 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D EFER_1013 ltaE; L-allo-threonine aldolase, PLP-dependent K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D EFER_0634 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D EFER_3825 glyAB; Serine hydroxymethyltransferase 2 (Serine methylase 2) (SHMT 2) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D EFER_1897 ycdW; 2-ketoacid reductase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D EFER_3554 tiaE; 2-oxo-carboxylic acid reductase (glyoxalate reductase) (2-ketoaldonate reductase) K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D EFER_0277 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D EFER_2354 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D EFER_4494 ytjC; phosphoglyceromutase 2, co-factor independent K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D EFER_3606 gpmI; phosphoglycero mutase III, cofactor-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D EFER_2850 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D EFER_1052 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D EFER_4485 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D EFER_1536 ydfG; L-allo-threonine dehydrogenase, NAD(P)-binding K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D EFER_3907 kbl; 2-amino-3-ketobutyrate coenzyme A ligase (AKB ligase) (Glycine acetyltransferase) K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D EFER_3906 tdh; threonine 3-dehydrogenase, NAD(P)-binding K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D EFER_1611 tynA; tyramine oxidase, copper-requiring K00276 AOC3; primary-amine oxidase [EC:1.4.3.21]
D EFER_2839 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D EFER_2841 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D EFER_4150 putative dihydrolipoyl dehydrogenase, E3 component (lpd-like) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_0137 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_2840 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
D EFER_0488 pssA; phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D EFER_1262 sdaA; L-serine deaminase I K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D EFER_0263 sdaB; L-serine deaminase II K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D EFER_3050 tdcB; catabolic threonine dehydratase, PLP-dependent K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D EFER_3730 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D EFER_3973 dsdA; D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D EFER_3060 Putative aldolase or racemase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D EFER_1696 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D EFER_1695 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:efe00270]
D EFER_3601 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D EFER_0759 cysK; cysteine synthase A, O-acetylserine sulfhydrolase A subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D EFER_2948 metC; cystathionine beta-lyase, PLP-dependent K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D EFER_1421 malY; C-S lyase; antagonist of MalT transcriptional activator of maltose regulon in E. coli K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D EFER_4072 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D EFER_3671 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D EFER_2881 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D EFER_0141 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D EFER_0142 speE; spermidine synthase (putrescine aminopropyltransferase) K00797 speE; spermidine synthase [EC:2.5.1.16]
D EFER_0182 pfs; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D EFER_0474 yfiH; conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D EFER_4146 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D EFER_3533 methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D EFER_1242 yebR; conserved hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D EFER_4070 DNA modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D EFER_0382 luxS; S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D EFER_4115 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D EFER_0001 thrA; fused aspartokinase I; homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D EFER_3831 metL; fused aspartokinase II; homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D EFER_3410 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D EFER_4066 metA; homoserine transsuccinylase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D EFER_3832 metB; cystathionine gamma-synthase, PLP-dependent K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D EFER_3732 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D EFER_0381 gshA; gamma-glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D EFER_2886 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D EFER_1072 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D EFER_0651 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D EFER_4154 Putative malate/L-lactate dehydrogenases K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D EFER_1175 yedO; D-cysteine desulfhydrase, PLP-dependent K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D EFER_3213 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D EFER_1262 sdaA; L-serine deaminase I K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D EFER_0263 sdaB; L-serine deaminase II K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D EFER_0752 cysM; cysteine synthase B (O-acetylserine sulfhydrolase B) K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D EFER_2850 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D EFER_1052 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:efe00280]
D EFER_3732 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D EFER_4150 putative dihydrolipoyl dehydrogenase, E3 component (lpd-like) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_0137 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_1603 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D EFER_3635 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D EFER_0823 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D EFER_3636 fadA; 3-ketoacyl-CoA thiolase (thiolase I) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D EFER_0822 yfcY; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D EFER_0410 gabT; 4-aminobutyrate aminotransferase, PLP-dependent K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D EFER_0935 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_2775 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:efe00290]
D EFER_3050 tdcB; catabolic threonine dehydratase, PLP-dependent K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D EFER_3730 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D EFER_0094 leuC; 3-isopropylmalate isomerase subunit, dehydratase component K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D EFER_0093 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D EFER_0095 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D EFER_0099 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D EFER_3968 ilvB; acetolactate synthase I, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D EFER_3734 ilvG; Acetolactate synthase isozyme II large subunit (ALS-II) (Acetohydroxy-acid synthase II large subunit) (AHAS-II) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D EFER_0100 ilvH; acetolactate synthase III, thiamin-dependent, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D EFER_3967 ilvN; acetolactate synthase I, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D EFER_3733 ilvM; acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D EFER_3728 ilvC; ketol-acid reductoisomerase, NAD(P)-binding K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D EFER_3731 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D EFER_3732 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D EFER_3570 avtA; valine-pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D EFER_0879 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D EFER_0096 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:efe00300]
D EFER_4115 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D EFER_0001 thrA; fused aspartokinase I; homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D EFER_3831 metL; fused aspartokinase II; homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D EFER_3410 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D EFER_0697 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D EFER_0075 putative dihydrodipicolinate synthetase (DHDPS) K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D EFER_0038 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D EFER_0188 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D EFER_3332 argD; bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D EFER_0706 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D EFER_3693 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D EFER_2773 lysA; diaminopimelate decarboxylase, PLP-binding K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D EFER_0107 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D EFER_0108 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:efe00310]
D EFER_2386 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D EFER_4149 sucB; dihydrolipoamide succinyltransferase (E2 component) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D EFER_4150 putative dihydrolipoyl dehydrogenase, E3 component (lpd-like) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_0137 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_1603 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D EFER_3635 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D EFER_0823 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D EFER_0935 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_2775 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_0209 ldcC; lysine decarboxylase 2, constitutive K01582 E4.1.1.18; lysine decarboxylase [EC:4.1.1.18]
D EFER_1900 cadA; lysine decarboxylase 1 K01582 E4.1.1.18; lysine decarboxylase [EC:4.1.1.18]
D EFER_3025 ygjG; putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent K09251 patA; putrescine aminotransferase [EC:2.6.1.82]
D EFER_1518 ydcW; medium chain aldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19]
D EFER_0410 gabT; 4-aminobutyrate aminotransferase, PLP-dependent K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D EFER_0411 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D EFER_0413 ygaT; conserved hypothetical protein K15737 csiD; glutarate dioxygenase [EC:1.14.11.64]
D EFER_0412 ygaF; putative enzyme K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13]
D EFER_1503 ydcJ; conserved hypothetical protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93]
D EFER_1365 ydiJ; putative conserved FAD-linked oxidoreductase K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
D EFER_0938 atoD; acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D EFER_0937 atoA; acetyl-CoA:acetoacetyl-CoA transferase, beta subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
C 00220 Arginine biosynthesis [PATH:efe00220]
D EFER_4330 arcB; Ornithine carbamoyltransferase, catabolic (OTCase) K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D EFER_4334 argI; ornithine carbamoyltransferase 1 K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D EFER_3150 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D EFER_3803 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D EFER_4332 Putative arginine deiminase (Arginine dihydrolase) K01478 arcA; arginine deiminase [EC:3.5.3.6]
D EFER_1550 yneH; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D EFER_2818 ybaS; amidase, possibly glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D EFER_3903 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D EFER_0041 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D EFER_0040 carA; carbamoyl phosphate synthetase small subunit, glutamine amidotransferase K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D EFER_4331 arcC; Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D EFER_0561 ybcF; putative carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D EFER_0421 yahI; putative carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D EFER_1304 gdhA; glutamate dehydrogenase, NADP-specific K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D EFER_1072 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D EFER_0879 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D EFER_0252 argA; fused acetylglutamate kinase homolog (inactive); amino acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D EFER_3804 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D EFER_3805 argC; N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D EFER_3332 argD; bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D EFER_2816 putative peptidic bond hydrolase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
D EFER_3806 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:efe00330]
D EFER_2785 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D EFER_2878 speA; biosynthetic arginine decarboxylase, PLP-binding K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D EFER_2871 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D EFER_2418 speF; ornithine decarboxylase isozyme, inducible K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D EFER_2908 speC; ornithine decarboxylase, constitutive K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D EFER_0142 speE; spermidine synthase (putrescine aminopropyltransferase) K00797 speE; spermidine synthase [EC:2.5.1.16]
D EFER_0141 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D EFER_3025 ygjG; putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent K09251 patA; putrescine aminotransferase [EC:2.6.1.82]
D EFER_1518 ydcW; medium chain aldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19]
D EFER_1522 speG; spermidine N1-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D EFER_0794 putative amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D EFER_1318 astA; arginine succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D EFER_1320 astB; succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D EFER_1317 astC; succinylornithine transaminase, PLP-dependent K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D EFER_1319 astD; succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D EFER_1321 astE; succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D EFER_2637 proC; pyrroline-5-carboxylate reductase, NAD(P)-binding K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D EFER_1913 putA; fused DNA-binding transcriptional regulator; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D EFER_2736 proB; gamma-glutamate kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D EFER_2735 proA; gamma-glutamylphosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D EFER_1072 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:efe00340]
D EFER_2102 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D EFER_2109 hisI; fused phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D EFER_2107 hisA; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D EFER_2106 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D EFER_2108 hisF; imidazole glycerol phosphate synthase, catalytic subunit with HisH K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D EFER_2105 hisB; fused histidinol-phosphatase; imidazoleglycerol-phosphate dehydratase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D EFER_2104 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D EFER_2103 hisD; bifunctional histidinal dehydrogenase and histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:efe00350]
D EFER_1072 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D EFER_2104 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D EFER_4146 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D EFER_1611 tynA; tyramine oxidase, copper-requiring K00276 AOC3; primary-amine oxidase [EC:1.4.3.21]
D EFER_1612 feaB; phenylacetaldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D EFER_1582 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D EFER_1714 adhE; fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D EFER_1495 adhP; alcohol dehydrogenase, 1-propanol preferring K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D EFER_3583 yiaY; Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D EFER_3870 alcohol dehydrogenase in rhamnose degradation pathway K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D EFER_3070 hpaB; 4-hydroxyphenylacetate 3-monooxygenase large component K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9]
D EFER_3071 hpaC; 4-hydroxyphenylacetate 3-monooxygenase small component, Flavin:NADH reductase K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D EFER_3064 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase (Homoprotocatechuate 2,3-dioxygenase) K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15]
D EFER_3063 hpaE; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]
D EFER_3065 hpaF; 5-carboxymethyl-2-hydroxymuconate delta-isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
D EFER_3062 hpaG; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D EFER_3066 hpaH; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
D EFER_3067 hpaI; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D EFER_0411 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D EFER_2307 ybiC; putative hydroxyacid dehydrogenase K13574 hcxB; hydroxycarboxylate dehydrogenase B [EC:1.1.1.237 1.1.1.-]
C 00360 Phenylalanine metabolism [PATH:efe00360]
D EFER_1611 tynA; tyramine oxidase, copper-requiring K00276 AOC3; primary-amine oxidase [EC:1.4.3.21]
D EFER_1612 feaB; phenylacetaldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D EFER_1598 paaK; phenylacetyl-CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D EFER_1600 paaI; phenylacetate pathway hotdog-fold thioesterase K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D EFER_1608 paaA; putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]
D EFER_1607 paaB; putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
D EFER_1606 paaC; putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
D EFER_1605 paaD; putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
D EFER_1604 paaJ; subunit of the phenylacetly-CoA oxygenase/reductase K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
D EFER_1602 paaG; acyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D EFER_1609 maoC; fused aldehyde dehydrogenase; enoyl-CoA hydratase K02618 paaZ; oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase [EC:3.3.2.12 1.2.1.91]
D EFER_1599 paaE; beta-ketoadipyl CoA thiolase K02615 paaJ; 3-oxo-5,6-didehydrosuberyl-CoA/3-oxoadipyl-CoA thiolase [EC:2.3.1.223 2.3.1.174]
D EFER_1603 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D EFER_1601 paaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D EFER_1072 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D EFER_2104 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D EFER_4146 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D EFER_3417 yhhY; putative acetyltransferase K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-]
D EFER_1766 dadA; D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D EFER_1149 dadA; putative D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D EFER_2307 ybiC; putative hydroxyacid dehydrogenase K13574 hcxB; hydroxycarboxylate dehydrogenase B [EC:1.1.1.237 1.1.1.-]
D EFER_3820 katG; catalase/hydroperoxidase HPI(I) K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D EFER_0794 putative amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00380 Tryptophan metabolism [PATH:efe00380]
D EFER_2386 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D EFER_4149 sucB; dihydrolipoamide succinyltransferase (E2 component) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D EFER_4150 putative dihydrolipoyl dehydrogenase, E3 component (lpd-like) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_0137 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_1603 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D EFER_3635 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D EFER_0823 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D EFER_0935 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_2775 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_4004 tnaA; tryptophanase/L-cysteine desulfhydrase, PLP-dependent K01667 tnaA; tryptophanase [EC:4.1.99.1]
D EFER_0794 putative amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D EFER_1335 katE; hydroperoxidase HPII(III) (catalase) K03781 katE; catalase [EC:1.11.1.6]
D EFER_3820 katG; catalase/hydroperoxidase HPI(I) K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:efe00400]
D EFER_0468 aroF; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D EFER_1360 aroH; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D EFER_2356 aroG; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D EFER_3355 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D EFER_0089 aroD; 3-dehydroquinate dehydratase (3-dehydroquinase) (Type I DHQase) K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D EFER_3265 aroE; dehydroshikimate reductase, NAD(P)-binding K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D EFER_3356 aroK; shikimate kinase I K00891 aroK; shikimate kinase [EC:2.7.1.71]
D EFER_2635 aroL; Shikimate kinase II (SKII) K00891 aroK; shikimate kinase [EC:2.7.1.71]
D EFER_1053 aroA; 5-enolpyruvylshikimate-3-phosphate synthetase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D EFER_0834 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D EFER_1692 trpE; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D EFER_1693 trpD; fused glutamine amidotransferase (component II) of anthranilate synthase; anthranilate phosphoribosyl transferase K13497 trpGD; anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18]
D EFER_1694 trpC; fused indole-3-glycerolphosphate synthetase; N-(5-phosphoribosyl)anthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D EFER_1696 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D EFER_1695 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D EFER_0469 tyrA; fused chorismate mutase T; prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D EFER_0470 pheA; fused chorismate mutase P; prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D EFER_1072 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D EFER_2104 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D EFER_4146 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:efe00410]
D EFER_0152 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D EFER_1575 gadB; glutamate decarboxylase B, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D EFER_2817 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D EFER_0410 gabT; 4-aminobutyrate aminotransferase, PLP-dependent K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D EFER_1611 tynA; tyramine oxidase, copper-requiring K00276 AOC3; primary-amine oxidase [EC:1.4.3.21]
D EFER_1518 ydcW; medium chain aldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19]
D EFER_0155 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D EFER_2231 yeiT; putative Fe-S cluster containing oxidoreductase subunit K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D EFER_2232 yeiA; putative oxidoreductase subunit K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D EFER_1603 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D EFER_3635 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D EFER_0823 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00430 Taurine and hypotaurine metabolism [PATH:efe00430]
D EFER_1575 gadB; glutamate decarboxylase B, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D EFER_2817 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D EFER_3419 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D EFER_2651 tauD; taurine dioxygenase, 2-oxoglutarate-dependent K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D EFER_0871 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D EFER_1998 conserved hypothetical protein, similar to pduL K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D EFER_0872 ackA; acetate kinase A and propionate kinase 2 K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:efe00450]
D EFER_3832 metB; cystathionine gamma-synthase, PLP-dependent K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D EFER_2948 metC; cystathionine beta-lyase, PLP-dependent K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D EFER_1421 malY; C-S lyase; antagonist of MalT transcriptional activator of maltose regulon in E. coli K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D EFER_4072 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D EFER_3671 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D EFER_3533 methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D EFER_1372 sufS; selenocysteine lyase, PLP-dependent K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D EFER_1036 trxB; thioredoxin reductase, FAD/NAD(P)-binding K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D EFER_3021 Putative Thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D EFER_0316 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D EFER_0315 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D EFER_1301 selD; selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D EFER_3585 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D EFER_2199 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:efe00460]
D EFER_2219 bglX; beta-D-glucoside glucohydrolase, periplasmic K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D EFER_3419 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D EFER_1297 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D EFER_2899 ansB; periplasmic L-asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D EFER_4043 asnA; asparagine synthetase A K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D EFER_0634 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D EFER_3825 glyAB; Serine hydroxymethyltransferase 2 (Serine methylase 2) (SHMT 2) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:efe00470]
D EFER_1765 dadX; alanine racemase 2, PLP-binding K01775 alr; alanine racemase [EC:5.1.1.1]
D EFER_4143 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D EFER_3824 Alanine racemase 3 K01775 alr; alanine racemase [EC:5.1.1.1]
D EFER_0114 ddlB; D-alanine:D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D EFER_2642 ddlA; D-alanine-D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D EFER_1550 yneH; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D EFER_2818 ybaS; amidase, possibly glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D EFER_3792 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D EFER_0110 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D EFER_1649 ycjG; L-Ala-D/L-Glu epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D EFER_3973 dsdA; D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D EFER_3060 Putative aldolase or racemase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D EFER_1175 yedO; D-cysteine desulfhydrase, PLP-dependent K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D EFER_3693 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D EFER_2773 lysA; diaminopimelate decarboxylase, PLP-binding K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D EFER_1766 dadA; D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D EFER_1149 dadA; putative D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:efe00480]
D EFER_3419 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D EFER_1742 chaC; regulatory protein for cation transport K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7]
D EFER_2404 ybgL; putative lactam utilization protein, UPF0271 family K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D EFER_2406 ybgJ; putative hydrolase subunit K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9]
D EFER_2405 ybgK; putative hydrolase subunit K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D EFER_2528 ybdK; gamma-glutamyl:cysteine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D EFER_0381 gshA; gamma-glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D EFER_2886 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D EFER_4342 pepA; aminopeptidase A, a cyteinylglycinase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D EFER_0649 pepB; aminopeptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D EFER_1076 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D EFER_2741 pepD; aminoacyl-histidine dipeptidase (peptidase D) K01270 pepD; dipeptidase D [EC:3.4.13.-]
D EFER_1408 gst; glutathionine S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D EFER_1568 putative Glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D EFER_0979 yliJ; putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D EFER_0862 yfcF; putative enzyme K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D EFER_1791 putative Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D EFER_3493 gor; glutathione oxidoreductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D EFER_1794 icd; isocitrate dehydrogenase, specific for NADP+; e14 prophage K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D EFER_2112 gnd; gluconate-6-phosphate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D EFER_1221 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D EFER_2418 speF; ornithine decarboxylase isozyme, inducible K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D EFER_2908 speC; ornithine decarboxylase, constitutive K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D EFER_0142 speE; spermidine synthase (putrescine aminopropyltransferase) K00797 speE; spermidine synthase [EC:2.5.1.16]
D EFER_2930 gss; fused glutathionylspermidine amidase; glutathionylspermidine synthetase K01460 gsp; glutathionylspermidine amidase/synthetase [EC:3.5.1.78 6.3.1.8]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:efe00511]
D EFER_2656 Beta-galactosidase (Lactase) K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
C 00540 Lipopolysaccharide biosynthesis [PATH:efe00540]
D EFER_0204 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D EFER_0118 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D EFER_0202 lpxD; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D EFER_0566 lpxH; UDP-2,3-diacylglucosamine pyrophosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D EFER_0205 lpxB; tetraacyldisaccharide-1-P synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D EFER_1059 lpxK; lipid A 4'kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D EFER_3174 kdsD; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D EFER_1746 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D EFER_3175 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D EFER_1062 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D EFER_3924 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D EFER_1874 lpxL; lauryl-acyl carrier protein (ACP)-dependent acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D EFER_1217 lpxM; myristoyl-acyl carrier protein (ACP)-dependent acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D EFER_1914 msbB; Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D EFER_2263 yeiU; undecaprenyl pyrophosphate phosphatase K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D EFER_4173 eptA; putative metal dependent hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D EFER_3543 yhjW; inner membrane protein YhjW K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D EFER_2481 CrcA protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D EFER_0912 arnT; 4-amino-4-deoxy-L-arabinose transferase K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D EFER_0790 ddg; palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D EFER_0248 lpcA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D EFER_2996 rfaE; fused heptose 7-phosphate kinase; heptose 1-phosphate adenyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D EFER_0224 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D EFER_3908 waaD; ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D EFER_3910 waaC; ADP-heptose:LPS heptosyl transferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D EFER_3909 waaF; ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D EFER_3921 waaP; kinase that phosphorylates core heptose of lipopolysaccharide K02848 waaP; lipopolysaccharide core heptose(I) kinase [EC:2.7.1.235]
D EFER_3808 yijP; conserved hypothetical protein; putative inner membrane protein K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-]
D EFER_3923 waaQ; lipopolysaccharide core biosynthesis protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D EFER_1916 Putative Glycosyltransferase similar to rbfU encoded by Plasmid virulence plasmid pWR501; Plasmid pCP301; Plasmid pSF5 K23160 wabB; GlcNAc transferase
D EFER_3609 yibD; putative glycosyl transferase K19354 waaH; heptose III glucuronosyltransferase [EC:2.4.1.-]
D EFER_3914 waaY; lipopolysaccharide core biosynthesis protein K02850 waaY; heptose II phosphotransferase [EC:2.7.1.-]
D EFER_3913 waaZ; lipopolysaccharide core biosynthesis protein K12981 waaZ; KDO transferase III [EC:2.4.99.-]
D EFER_3922 waaG; glucosyltransferase I K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D EFER_3916 waaI; UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1,3-D-galactosyltransferase K03275 waaO; UDP-glucose:(glucosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D EFER_3915 waaJ; UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase K03276 waaR; UDP-glucose/galactose:(glucosyl)LPS alpha-1,2-glucosyl/galactosyltransferase [EC:2.4.1.-]
D EFER_3912 rfaK; Lipopolysaccharide 1,2-N-acetylglucosaminetransferase K03280 waaK; UDP-N-acetylglucosamine:(glucosyl)LPS alpha-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.56]
D EFER_4086 lipopolysaccharide 1,2-N-acetylglucosaminetransferase K00713 waaD; UDP-glucose:(glucosyl)LPS alpha-1,2-glucosyltransferase [EC:2.4.1.-]
D EFER_3920 UDP-glucose:glucosyl LPS a 1,2-glucosyltransferase K24623 waaH; UDP-glucose:(glucosyl)LPS alpha-1,2-glucosyltransferase [EC:2.4.1.-]
D EFER_3911 rfaL; O-antigen ligase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis [PATH:efe00542]
D EFER_3720 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:efe00541]
D EFER_1719 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D EFER_2126 galF; putative subunit with GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D EFER_2350 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D EFER_2111 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D EFER_3715 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D EFER_3716 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D EFER_3713 rffA; TDP-4-oxo-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D EFER_3714 rffC; TDP-fucosamine acetyltransferase K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D EFER_1424 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D EFER_2132 cpsG; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D EFER_2114 cpsG; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D EFER_2133 cpsB; mannose-1-phosphate guanyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D EFER_2115 Mannose-1-phosphate guanylyltransferase [GDP] (GDP-mannose pyrophosphorylase) (GMP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D EFER_2137 gmd; GDP-D-mannose dehydratase, NAD(P)-binding K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D EFER_2118 gmd; GDP-D-mannose dehydratase, NAD(P)-binding K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D EFER_2136 fcl; bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D EFER_2117 fcl; bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D EFER_4028 glmU; fused N-acetyl glucosamine-1-phosphate uridyltransferase; glucosamine-1-phosphate acetyl transferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D EFER_3718 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D EFER_3717 rffD; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 00550 Peptidoglycan biosynthesis [PATH:efe00550]
D EFER_3166 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D EFER_3779 murB; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D EFER_0113 murC; UDP-N-acetylmuramate:L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D EFER_0110 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D EFER_0107 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D EFER_0114 ddlB; D-alanine:D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D EFER_2642 ddlA; D-alanine-D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D EFER_0108 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D EFER_0196 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D EFER_3002 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D EFER_0982 ybjG; undecaprenyl pyrophosphate phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D EFER_0109 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D EFER_0112 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D EFER_3185 mtgA; biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D EFER_3362 mrcA; fused penicillin-binding protein 1a: murein transglycosylase; murein transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D EFER_0172 mrcB; fused glycosyl transferase; transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D EFER_0653 pbpC; fused transglycosylase; transpeptidase K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D EFER_2470 mrdA; transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D EFER_0106 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D EFER_2473 dacA; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D EFER_0980 dacC; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D EFER_3159 dacB; D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D EFER_0742 murQ; D-lactyl ether N-acetylmuramic-6-phosphate acid etherase; beta-lactamase family K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:efe00552]
D EFER_3002 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D EFER_0982 ybjG; undecaprenyl pyrophosphate phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D EFER_3720 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:efe00543]
D EFER_2131 wcaJ; putative UDP-sugar lipid carrier transferase K03606 wcaJ; undecaprenyl-phosphate glucose phosphotransferase [EC:2.7.8.31]
D EFER_2134 wcaI; putative glycosyl transferase K03208 wcaI; putative colanic acid biosynthesis glycosyltransferase WcaI
D EFER_2138 wcaF; putative glycose-acyl transferase K03818 wcaF; putative colanic acid biosynthesis acetyltransferase WcaF [EC:2.3.1.-]
D EFER_2139 wcaE; putative glycosyl transferase K13683 wcaE; putative colanic acid biosynthesis glycosyltransferase WcaE [EC:2.4.-.-]
D EFER_2141 wcaC; putative glycosyl transferase K13684 wcaC; putative colanic acid biosynthesis glycosyltransferase WcaC [EC:2.4.-.-]
D EFER_2142 wcaB; putative acyl transferase K03819 wcaB; putative colanic acid biosynthesis acetyltransferase WcaB [EC:2.3.1.-]
D EFER_2143 wcaA; putative glycosyl transferase K25875 wcaA; putative colanic acid biosynthesis glycosyltransferase WcaA
D EFER_2128 wcaL; putative glycosyl transferase K16703 wcaL; colanic acid/amylovoran/stewartan biosynthesis glycosyltransferase WcaL/AmsK/CpsK [EC:2.4.-.-]
D EFER_2129 wcaK; putative pyruvyl transferase K16710 wcaK; colanic acid/amylovoran biosynthesis protein WcaK/AmsJ
D EFER_3720 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D EFER_3709 rffM; UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D EFER_3711 rffT; TDP-Fuc4NAc:lipidIIFuc4NAc transferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D EFER_1906 pgaC; putative glycosyl transferase associated with biofilm formation K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D EFER_1907 ycdP; Biofilm PGA synthesis protein pgaD K11937 pgaD; biofilm PGA synthesis protein PgaD
D EFER_3601 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:efe00730]
D EFER_3760 thiC; thiamin (pyrimidine moiety) biosynthesis protein K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D EFER_2189 thiD; bifunctional hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D EFER_3762 thiF; thiamin (thiazole moiety) biosynthesis protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D EFER_0642 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D EFER_2602 thiI; sulfurtransferase required for thiamine and 4-thiouridine biosynthesis K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D EFER_3765 thiH; thiamin biosynthesis ThiGH complex subunit K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D EFER_2605 dxs; 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D EFER_3764 thiG; thiamin biosynthesis ThiGH complex subunit K03149 thiG; thiazole synthase [EC:2.8.1.10]
D EFER_2190 Hydroxyethylthiazole kinase (4-methyl-5-beta-hydroxyethylthiazole kinase) (Thz kinase) (TH kinase) K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D EFER_3761 thiE; thiamin phosphate synthase (thiamin phosphate pyrophosphorylase) K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D EFER_2608 thiL; thiamin-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D EFER_4215 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D EFER_2640 phoA; bacterial alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D EFER_1822 thiK; thiamine kinase K07251 thiK; thiamine kinase [EC:2.7.1.89]
D EFER_0523 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:efe00740]
D EFER_1677 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D EFER_2611 ribD; fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D EFER_0985 ybjI; putative phosphatase K20861 ybjI; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D EFER_3690 yigB; putative hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D EFER_2990 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D EFER_2610 ribE; riboflavin synthase beta chain K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D EFER_1382 ribC; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D EFER_0017 ribF; bifunctional riboflavin kinase and FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D EFER_3043 Periplasmic appA protein precursor [Includes: Phosphoanhydride phosphohydrolase (pH 2.5 acid phosphatase) (AP); 4-phytase] K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D EFER_4157 aphA; acid phosphatase/phosphotransferase, class B, non-specific K03788 aphA; acid phosphatase (class B) [EC:3.1.3.2]
D EFER_3071 hpaC; 4-hydroxyphenylacetate 3-monooxygenase small component, Flavin:NADH reductase K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D EFER_3638 fre; flavin reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D EFER_1081 ssuE; NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D EFER_2190 Hydroxyethylthiazole kinase (4-methyl-5-beta-hydroxyethylthiazole kinase) (Thz kinase) (TH kinase) K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D EFER_2975 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D EFER_1796 ymfB; bifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D EFER_0852 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D EFER_0330 conserved putative non-oxidative reversible hydroxyarylic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:efe00750]
D EFER_1405 pdxH; pyridoxine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D EFER_0754 pdxK; pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D EFER_1407 pdxY; pyridoxal kinase 2/pyridoxine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D EFER_1595 ydbC; putative aldo/keto reductase, NAD(P)-binding K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65]
D EFER_2859 epd; D-erythrose 4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D EFER_0843 pdxB; erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D EFER_1052 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D EFER_0063 pdxA; 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D EFER_0510 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D EFER_0003 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:efe00760]
D EFER_0499 nadB; quinolinate synthase, L-aspartate oxidase (B protein) subunit K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D EFER_2360 nadA; quinolinate synthase, subunit A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D EFER_0129 nadC; quinolinate phosphoribosyltransferase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D EFER_1075 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D EFER_0767 xapA; purine nucleoside phosphorylase II K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D EFER_4481 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D EFER_4487 nadR; bifunctional DNA-binding transcriptional repressor and NMN adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D EFER_4145 putative transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D EFER_0532 ushA; bifunctional UDP-sugar hydrolase and 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D EFER_0324 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D EFER_2434 nagD; NMP phosphatase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D EFER_2467 nadD; nicotinic acid mononucleotide adenylyltransferase, NAD(P)-dependent K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D EFER_0283 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D EFER_3758 nudC; NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D EFER_1327 nadE; NAD synthetase, NH3/glutamine-dependent K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D EFER_0374 ygaD; conserved hypothetical protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D EFER_1296 pncA; nicotinamidase/pyrazinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D EFER_1284 cobB; deacetylase of acetyl-CoA synthetase, NAD-dependent K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D EFER_0458 ppnK; inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D EFER_3800 sthA; pyridine nucleotide transhydrogenase, soluble K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D EFER_1434 pntA; pyridine nucleotide transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D EFER_1435 pntB; pyridine nucleotide transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D EFER_0411 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D EFER_1549 yneI; putative aldehyde dehydrogenase K08324 sad; succinate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.24]
C 00770 Pantothenate and CoA biosynthesis [PATH:efe00770]
D EFER_0099 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D EFER_3968 ilvB; acetolactate synthase I, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D EFER_3734 ilvG; Acetolactate synthase isozyme II large subunit (ALS-II) (Acetohydroxy-acid synthase II large subunit) (AHAS-II) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D EFER_0100 ilvH; acetolactate synthase III, thiamin-dependent, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D EFER_3967 ilvN; acetolactate synthase I, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D EFER_3733 ilvM; acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D EFER_3728 ilvC; ketol-acid reductoisomerase, NAD(P)-binding K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D EFER_3731 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D EFER_0156 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D EFER_2600 panE; 2-dehydropantoate reductase, NADPH-specific K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D EFER_0155 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D EFER_3777 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D EFER_3930 dfp; fused 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D EFER_0283 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D EFER_3925 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D EFER_0124 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D EFER_0511 acpS; holo-[acyl-carrier-protein] synthase 1 K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D EFER_3467 acpT; 4'-phosphopantetheinyl transferase 2 K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D EFER_2621 acpH; acyl carrier protein phosphodiesterase K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D EFER_3732 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D EFER_2231 yeiT; putative Fe-S cluster containing oxidoreductase subunit K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D EFER_2232 yeiA; putative oxidoreductase subunit K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D EFER_0152 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:efe00780]
D EFER_2335 bioC; putative methltransferase, enzyme of biotin synthesis K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D EFER_3463 putative 3-oxoacyl-[acyl-carrier-protein] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D EFER_0840 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D EFER_1832 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D EFER_3466 putative beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D EFER_1834 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D EFER_3465 putative 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D EFER_0800 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D EFER_0203 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D EFER_1665 fabI; enoyl-[acyl-carrier-protein] reductase, NADH-dependent K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D EFER_3380 bioH; carboxylesterase of pimeloyl-CoA synthesis K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D EFER_2337 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D EFER_2339 bioA; 7,8-diaminopelargonic acid synthase, PLP-dependent K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D EFER_1443 ynfK; putative synthase (similar to dethiobiotin synthetase) K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D EFER_2334 bioD; dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D EFER_2338 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D EFER_3778 birA; bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase and DNA-binding transcriptional repressor, bio-5'-AMP-binding K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D EFER_3548 bisC; biotin sulfoxide reductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
C 00785 Lipoic acid metabolism [PATH:efe00785]
D EFER_2475 lipB; lipoyl-protein ligase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D EFER_2476 lipA; lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D EFER_4483 lplA; lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D EFER_4150 putative dihydrolipoyl dehydrogenase, E3 component (lpd-like) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_0137 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_0135 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D EFER_0136 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D EFER_2387 sucA; 2-oxoglutarate decarboxylase, thiamin-requiring K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D EFER_2386 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D EFER_4149 sucB; dihydrolipoamide succinyltransferase (E2 component) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D EFER_2839 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D EFER_2841 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D EFER_2840 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:efe00790]
D EFER_2238 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D EFER_2640 phoA; bacterial alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D EFER_1207 nudB; dATP pyrophosphohydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D EFER_3003 folB; bifunctioal dihydroneopterin aldolase; dihydroneopterin triphosphate 2'-epimerase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D EFER_0165 folK; 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D EFER_3154 folP; 7,8-dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D EFER_0056 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D EFER_0848 folC; bifunctional folylpolyglutamate synthase and dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D EFER_1677 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D EFER_3333 pabA; aminodeoxychorismate synthase, subunit II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D EFER_1264 pabB; aminodeoxychorismate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D EFER_1831 pabC; Aminodeoxychorismate lyase (4-amino-4-deoxychorismate lyase) (ADC lyase) (ADCL) K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D EFER_0860 folX; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase K07589 folX; D-erythro-7,8-dihydroneopterin triphosphate epimerase [EC:5.1.99.7]
D EFER_1431 folM; dihydrofolate reductase isozyme K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3]
D EFER_0297 ygcM; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D EFER_0293 ygcF; conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D EFER_2573 queC; queuosine biosynthesis protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D EFER_0266 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D EFER_2330 moaA; molybdopterin biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D EFER_2328 moaC; molybdopterin biosynthesis, protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D EFER_2326 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D EFER_0008 mogA; molybdochelatase MogA, involved in Moco biosynthesis K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D EFER_2329 moaB; molybdopterin biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D EFER_0969 moeA; molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D EFER_2823 putative MobA-related protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D EFER_3619 mobA; molybdopterin-guanine dinucleotide synthase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:efe00670]
D EFER_0056 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D EFER_1431 folM; dihydrofolate reductase isozyme K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3]
D EFER_0571 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D EFER_0634 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D EFER_3825 glyAB; Serine hydroxymethyltransferase 2 (Serine methylase 2) (SHMT 2) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D EFER_0676 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D EFER_3748 purH; fused IMP cyclohydrolase; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D EFER_3271 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D EFER_2841 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D EFER_4072 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D EFER_2760 thyA; thymidylate synthetase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D EFER_1723 purU; formyltetrahydrofolate hydrolase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D EFER_3821 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D EFER_2849 ygfA; putative ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:efe00860]
D EFER_0770 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D EFER_1751 hemA; glutamyl tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D EFER_0177 hemL; glutamate-1-semialdehyde aminotransferase (aminomutase) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D EFER_2650 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D EFER_3700 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D EFER_3701 hemD; uroporphyrinogen III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D EFER_3757 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D EFER_0736 hemF; coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D EFER_3610 hemN; coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D EFER_3898 putative coproporphyrinogen III oxidase and related FeS oxidoreductase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D EFER_3631 hemG; protoporphyrin oxidase, flavoprotein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D EFER_0525 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D EFER_3702 hemX; putative uroporphyrinogen III methylase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D EFER_3340 cysG; fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase; uroporphyrinogen methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D EFER_2589 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D EFER_1687 btuR; cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D EFER_0720 eutT; putative cobalamin adenosyltransferase in ethanolamine utilization K04032 eutT; ethanolamine utilization cobalamin adenosyltransferase [EC:2.5.1.154]
D EFER_3307 bfr; bacterioferritin, iron storage and detoxification protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:efe00130]
D EFER_4130 ubiC; chorismate pyruvate lyase (modular protein) K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D EFER_4131 ubiA; p-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D EFER_3639 ubiD; 3-octaprenyl-4-hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D EFER_0852 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D EFER_0330 conserved putative non-oxidative reversible hydroxyarylic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D EFER_2843 visC; putative oxidoreductase with FAD/NAD(P)-binding domain K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D EFER_0933 ubiG; bifunctional 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D EFER_2844 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D EFER_3647 ubiE; bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D EFER_2440 ubiF; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D EFER_0903 menF; isochorismate synthase 2 K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D EFER_2501 entC; isochorismate synthase 1 K02361 entC; isochorismate synthase [EC:5.4.4.2]
D EFER_0904 menD; bifunctional 2-oxoglutarate decarboxylase and SHCHC synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D EFER_0905 yfbB; putative thioesterase, menaquinone synthesis K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D EFER_0907 menC; o-succinylbenzoyl-CoA synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D EFER_0908 menE; o-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D EFER_0906 menB; dihydroxynaphthoic acid synthetase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D EFER_1366 ydiI; putative esterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D EFER_3842 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D EFER_1155 wrbA; putative conserved flavoprotein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D EFER_4271 ytfG; NAD(P)H:quinone oxidoreductase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:efe00900]
D EFER_2605 dxs; 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D EFER_0195 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D EFER_0321 ispD; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D EFER_1753 ispE; 4-diphosphocytidyl-2-C-methylerythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D EFER_0322 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D EFER_0657 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D EFER_0022 ispH; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D EFER_0935 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_2775 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_0852 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D EFER_0330 conserved putative non-oxidative reversible hydroxyarylic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D EFER_2824 idi; isopentenyl diphosphate isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D EFER_2604 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D EFER_3164 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D EFER_0196 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:efe00907]
D EFER_1603 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D EFER_3635 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D EFER_0823 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D EFER_3111 yjgB; putative alcohol dehydrogenase, Zn-dependent and NAD(P)-binding K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183]
D EFER_3636 fadA; 3-ketoacyl-CoA thiolase (thiolase I) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D EFER_0822 yfcY; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D EFER_2514 putative transketolase C-terminal section K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D EFER_2515 putative transketolase N-terminal section (TK) K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D EFER_0714 tktB; transketolase 2, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D EFER_0869 putative carbohydrate degradation enzyme K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D EFER_0870 putative carbohydrate degradation enzyme K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D EFER_2867 tktA; transketolase 1, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:efe00523]
D EFER_3715 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D EFER_3716 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:efe01053]
D EFER_0903 menF; isochorismate synthase 2 K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D EFER_2501 entC; isochorismate synthase 1 K02361 entC; isochorismate synthase [EC:5.4.4.2]
D EFER_2499 entB; isochorismatase K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D EFER_2498 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase K00216 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28]
D EFER_2513 4'-phosphopantetheinyl transferase entD K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D EFER_2500 entE; 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D EFER_2508 entF; enterobactin synthase multienzyme complex component, ATP-dependent K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72]
D EFER_2497 ybdB; putative esterase K24147 entH; proofreading thioesterase EntH
C 01055 Biosynthesis of vancomycin group antibiotics
D EFER_3716 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:efe00946]
D EFER_2219 bglX; beta-D-glucoside glucohydrolase, periplasmic K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:efe00332]
D EFER_2736 proB; gamma-glutamate kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D EFER_2735 proA; gamma-glutamylphosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:efe00261]
D EFER_0316 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D EFER_0315 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D EFER_4115 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D EFER_0001 thrA; fused aspartokinase I; homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D EFER_3831 metL; fused aspartokinase II; homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D EFER_3410 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D EFER_0697 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D EFER_0075 putative dihydrodipicolinate synthetase (DHDPS) K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D EFER_0038 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:efe00521]
D EFER_0780 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D EFER_2420 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D EFER_0639 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D EFER_3715 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D EFER_3716 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D EFER_0780 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:efe00525]
D EFER_3715 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D EFER_3716 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:efe00401]
D EFER_0469 tyrA; fused chorismate mutase T; prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D EFER_1072 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D EFER_2104 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D EFER_4146 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D EFER_1692 trpE; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D EFER_1835 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D EFER_1834 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D EFER_3465 putative 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D EFER_0800 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D EFER_1665 fabI; enoyl-[acyl-carrier-protein] reductase, NADH-dependent K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D EFER_1833 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
D EFER_3454 putative acyl carrier protein 2 K02078 acpP; acyl carrier protein
D EFER_3453 putative acyl carrier protein component K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:efe00999]
D EFER_2881 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D EFER_3265 aroE; dehydroshikimate reductase, NAD(P)-binding K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D EFER_2219 bglX; beta-D-glucoside glucohydrolase, periplasmic K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:efe00362]
D EFER_1482 benA; Benzoate 1,2-dioxygenase alpha subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-]
D EFER_1483 benB; benzoate 1,2-dioxygenase beta subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D EFER_1484 benC; benzoate 1,2-dioxygenase ferredoxin reductase subunit K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D EFER_1485 benD; cis-diol dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-]
D EFER_1481 catA; Catechol 1,2-dioxygenase (1,2-CTD) K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D EFER_1479 catB; Muconate cycloisomerase I (Cis,cis-muconate lactonizing enzyme I) (MLE) K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
D EFER_1480 catC; Muconolactone delta-isomerase K03464 catC; muconolactone D-isomerase [EC:5.3.3.4]
D EFER_1632 pcaD; 3-oxoadipate enol-lactonase I K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D EFER_1636 pcaI; 3-oxoadipate CoA-transferase subunit A (Beta-ketoadipate:succinyl-CoA transferase subunit A) K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
D EFER_1635 pcaJ; 3-oxoadipate CoA-transferase subunit B (Beta-ketoadipate:succinyl-CoA transferase subunit B) K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
D EFER_3636 fadA; 3-ketoacyl-CoA thiolase (thiolase I) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D EFER_0822 yfcY; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D EFER_1634 paaJ; Beta-ketoadipyl CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
D EFER_1475 ydcE; 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D EFER_1501 pcaG; Protocatechuate 3,4-dioxygenase alpha chain K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D EFER_1502 pcaH; Protocatechuate 3,4-dioxygenase beta chain K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
D EFER_1633 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase (3-carboxymuconate lactonizing enzyme) (CMLE) K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D EFER_1631 pcaC; 4-carboxymuconolactone decarboxylase (CMD) K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D EFER_3828 putative decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D EFER_4403 para-hydroxybenzoate hydroxylase (4-hydroxybenzoate 3-monooxygenase) (PHBH) K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
D EFER_0823 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D EFER_3635 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D EFER_3127 Putative carboxybiotin decarboxylase subunit of malonate decarboxylase K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D EFER_0028 oadB; Oxalacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D EFER_1603 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D EFER_1601 paaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D EFER_0935 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_2775 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:efe00627]
D EFER_0794 putative amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D EFER_1105 yccX; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D EFER_0331 conserved putative non-oxidative hydroxyarylic acid decarboxylase activity K01612 bsdC; vanillate/4-hydroxybenzoate decarboxylase subunit C [EC:4.1.1.- 4.1.1.61]
D EFER_0332 conserved putative non-oxidative reversible hydroxyarylic acid decarboxylase K21759 bsdD; vanillate/4-hydroxybenzoate decarboxylase subunit D [EC:4.1.1.- 4.1.1.61]
D EFER_0852 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D EFER_0330 conserved putative non-oxidative reversible hydroxyarylic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D EFER_0938 atoD; acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D EFER_0937 atoA; acetyl-CoA:acetoacetyl-CoA transferase, beta subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
D EFER_1603 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00364 Fluorobenzoate degradation [PATH:efe00364]
D EFER_1482 benA; Benzoate 1,2-dioxygenase alpha subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-]
D EFER_1483 benB; benzoate 1,2-dioxygenase beta subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D EFER_1484 benC; benzoate 1,2-dioxygenase ferredoxin reductase subunit K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D EFER_1485 benD; cis-diol dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-]
D EFER_1481 catA; Catechol 1,2-dioxygenase (1,2-CTD) K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D EFER_2942 putative enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D EFER_3656 ysgA; putative hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D EFER_1479 catB; Muconate cycloisomerase I (Cis,cis-muconate lactonizing enzyme I) (MLE) K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
C 00625 Chloroalkane and chloroalkene degradation [PATH:efe00625]
D EFER_1495 adhP; alcohol dehydrogenase, 1-propanol preferring K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D EFER_3583 yiaY; Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D EFER_3870 alcohol dehydrogenase in rhamnose degradation pathway K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D EFER_1582 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D EFER_1714 adhE; fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:efe00361]
D EFER_1481 catA; Catechol 1,2-dioxygenase (1,2-CTD) K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D EFER_2942 putative enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D EFER_3656 ysgA; putative hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D EFER_1479 catB; Muconate cycloisomerase I (Cis,cis-muconate lactonizing enzyme I) (MLE) K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
C 00623 Toluene degradation [PATH:efe00623]
D EFER_1481 catA; Catechol 1,2-dioxygenase (1,2-CTD) K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D EFER_1479 catB; Muconate cycloisomerase I (Cis,cis-muconate lactonizing enzyme I) (MLE) K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
D EFER_2942 putative enzyme K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D EFER_3656 ysgA; putative hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation [PATH:efe00622]
D EFER_1482 benA; Benzoate 1,2-dioxygenase alpha subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-]
D EFER_1483 benB; benzoate 1,2-dioxygenase beta subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D EFER_1484 benC; benzoate 1,2-dioxygenase ferredoxin reductase subunit K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D EFER_1485 benD; cis-diol dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-]
D EFER_1475 ydcE; 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:efe00633]
D EFER_0993 nfsA; nitroreductase A, NADPH-dependent, FMN-dependent K10678 nfsA; nitroreductase [EC:1.-.-.-]
D EFER_2531 nfnB; dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive K10679 nfnB; nitroreductase / dihydropteridine reductase [EC:1.-.-.- 1.5.1.34]
D EFER_1394 nemA; N-ethylmaleimide reductase, FMN-linked K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D EFER_1111 hyaB; hydrogenase 1, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D EFER_2937 hybC; hydrogenase 2, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D EFER_1110 hyaA; hydrogenase 1, small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D EFER_2940 hybO; hydrogenase 2, small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
C 00642 Ethylbenzene degradation
D EFER_3636 fadA; 3-ketoacyl-CoA thiolase (thiolase I) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D EFER_0822 yfcY; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:efe00643]
D EFER_1612 feaB; phenylacetaldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D EFER_0794 putative amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D EFER_4261 putative CoA transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:efe00930]
D EFER_1603 paaF; enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D EFER_3635 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D EFER_0823 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D EFER_1475 ydcE; 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:efe00626]
D EFER_1495 adhP; alcohol dehydrogenase, 1-propanol preferring K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D EFER_3583 yiaY; Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D EFER_3870 alcohol dehydrogenase in rhamnose degradation pathway K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D EFER_1582 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D EFER_1714 adhE; fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
D EFER_1501 pcaG; Protocatechuate 3,4-dioxygenase alpha chain K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D EFER_1502 pcaH; Protocatechuate 3,4-dioxygenase beta chain K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:efe03020]
D EFER_3767 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D EFER_3766 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D EFER_3279 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D EFER_3941 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:efe03010]
D EFER_1055 rpsA; 30S ribosomal subunit protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D EFER_0191 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D EFER_3297 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D EFER_3280 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D EFER_3286 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D EFER_4253 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D EFER_3311 rpsG; 30S ribosomal subunit protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D EFER_3289 rpsH; 30S ribosomal subunit protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D EFER_3201 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D EFER_3304 rpsJ; 30S ribosomal subunit protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D EFER_3281 rpsK; 30S ribosomal subunit protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D EFER_3312 rpsL; 30S ribosomal subunit protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D EFER_3282 rpsM; 30S ribosomal subunit protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D EFER_3290 rpsN; 30S ribosomal subunit protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D EFER_3144 rpsO; 30S ribosomal subunit protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D EFER_0463 rpsP; 30S ribosomal subunit protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D EFER_3294 rpsQ; 30S ribosomal subunit protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D EFER_4255 rpsR; 30S ribosomal subunit protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D EFER_3299 rpsS; 30S ribosomal subunit protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D EFER_0015 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D EFER_3006 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D EFER_3770 rplA; 50S ribosomal subunit protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D EFER_3300 rplB; 50S ribosomal subunit protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D EFER_3303 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D EFER_3302 rplD; 50S ribosomal subunit protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D EFER_3291 rplE; 50S ribosomal subunit protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D EFER_3288 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D EFER_3768 rplL; 50S ribosomal subunit protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D EFER_4256 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D EFER_3769 rplJ; 50S ribosomal subunit protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D EFER_3771 rplK; 50S ribosomal subunit protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D EFER_3202 rplM; 50S ribosomal subunit protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D EFER_3293 rplN; 50S ribosomal subunit protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D EFER_3284 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D EFER_3296 rplP; 50S ribosomal subunit protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D EFER_3278 rplQ; 50S ribosomal subunit protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D EFER_3287 rplR; 50S ribosomal subunit protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D EFER_0466 rplS; 50S ribosomal subunit protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D EFER_1350 rplT; 50S ribosomal subunit protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D EFER_3163 rplU; 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D EFER_3298 rplV; 50S ribosomal subunit protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D EFER_3301 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D EFER_3292 rplX; 50S ribosomal subunit protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D EFER_2275 rplY; 50S ribosomal subunit protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D EFER_3162 rpmA; 50S ribosomal subunit protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D EFER_3928 rpmB; 50S ribosomal subunit protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D EFER_3295 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D EFER_3285 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D EFER_3836 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D EFER_1839 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D EFER_3927 rpmG; 50S ribosomal subunit protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D EFER_3999 rpmH; 50S ribosomal subunit protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D EFER_1349 rpmI; 50S ribosomal subunit protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D EFER_16S_6 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_5 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_1 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_7 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_3 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_2 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_4 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_23S_1 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_7 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_4 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_2 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_3 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_5 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_6 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_5S_1 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_4 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_3 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_8 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_6 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_7 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_2 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_5 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:efe00970]
D EFER_tRNA13 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D EFER_tRNA14 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D EFER_tRNA2 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D EFER_tRNA57 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D EFER_tRNA60 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D EFER_tRNA12 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D EFER_tRNA52 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D EFER_tRNA80 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D EFER_tRNA6 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D EFER_tRNA8 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D EFER_tRNA9 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D EFER_tRNA7 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D EFER_tRNA22 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D EFER_tRNA23 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D EFER_tRNA24 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D EFER_tRNA74 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D EFER_tRNA3 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D EFER_tRNA50 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D EFER_tRNA4 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D EFER_tRNA17 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D EFER_tRNA31 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D EFER_tRNA32 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D EFER_tRNA28 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D EFER_tRNA29 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D EFER_tRNA11 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D EFER_tRNA49 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D EFER_tRNA44 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D EFER_tRNA36 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D EFER_tRNA47 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D EFER_tRNA65 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D EFER_tRNA16 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D EFER_tRNA37 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D EFER_tRNA38 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D EFER_tRNA39 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D EFER_tRNA53 tRNA-His K14226 tRNA-His; tRNA His
D EFER_tRNA1 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D EFER_tRNA56 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D EFER_tRNA59 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D EFER_tRNA64 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA62 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA27 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA40 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA42 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA41 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA54 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA18 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA67 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D EFER_tRNA71 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D EFER_tRNA69 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D EFER_tRNA72 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D EFER_tRNA73 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D EFER_tRNA84 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D EFER_tRNA26 tRNA-Met K14230 tRNA-Met; tRNA Met
D EFER_tRNA30 tRNA-Met K14230 tRNA-Met; tRNA Met
D EFER_tRNA34 tRNA-Met K14230 tRNA-Met; tRNA Met
D EFER_tRNA63 tRNA-Met K14230 tRNA-Met; tRNA Met
D EFER_tRNA85 tRNA-Met K14230 tRNA-Met; tRNA Met
D EFER_tRNA86 tRNA-Met K14230 tRNA-Met; tRNA Met
D EFER_tRNA87 tRNA-Met K14230 tRNA-Met; tRNA Met
D EFER_tRNA33 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D EFER_tRNA43 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D EFER_tRNA58 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D EFER_tRNA25 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D EFER_tRNA55 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D EFER_tRNA5 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D EFER_tRNA75 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D EFER_tRNA15 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D EFER_tRNA21 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D EFER_tRNA79 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D EFER_tRNA48 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D EFER_tRNA61 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D EFER_tRNA45 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D EFER_tRNA66 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D EFER_tRNA51 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D EFER_tRNA19 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D EFER_tRNA20 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D EFER_tRNA46 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D EFER_tRNA68 tRNA-Val K14237 tRNA-Val; tRNA Val
D EFER_tRNA83 tRNA-Val K14237 tRNA-Val; tRNA Val
D EFER_tRNA81 tRNA-Val K14237 tRNA-Val; tRNA Val
D EFER_tRNA70 tRNA-Val K14237 tRNA-Val; tRNA Val
D EFER_tRNA82 tRNA-Val K14237 tRNA-Val; tRNA Val
D EFER_tRNA77 tRNA-Val K14237 tRNA-Val; tRNA Val
D EFER_tRNA78 tRNA-Val K14237 tRNA-Val; tRNA Val
D EFER_tRNA76 tRNA-OTHER K14237 tRNA-Val; tRNA Val
D EFER_tRNA35 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D EFER_0770 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D EFER_2429 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D EFER_0377 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D EFER_1206 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D EFER_1074 asnS; asparaginyl tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D EFER_3561 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D EFER_3560 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D EFER_1347 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D EFER_1042 serS; seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D EFER_3585 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D EFER_0568 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D EFER_2199 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D EFER_3271 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D EFER_4339 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D EFER_2464 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D EFER_0018 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D EFER_1898 lysU; lysine tRNA synthetase, inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D EFER_2825 lysS; lysine tRNA synthetase, constitutive K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D EFER_1197 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D EFER_0218 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D EFER_0658 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D EFER_1351 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D EFER_1352 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D EFER_1406 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D EFER_3350 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:efe03060]
D EFER_3283 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D EFER_3773 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D EFER_3152 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D EFER_2617 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D EFER_2616 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D EFER_2618 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D EFER_4002 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D EFER_0120 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D EFER_3603 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D EFER_0119 secM; regulator of secA translation K13301 secM; secretion monitor
D EFER_0462 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D EFER_misc_RNA_43 ffs; 4.5S K01983 ffs; SRP RNA
D EFER_3437 ftsY; fused Signal Recognition Particle (SRP) receptor: membrane binding protein; conserved hypothetical protein K03110 ftsY; fused signal recognition particle receptor
D EFER_3644 tatA; TatABCE protein translocation system subunit K03116 tatA; sec-independent protein translocase protein TatA
D EFER_3643 tatB; TatABCE protein translocation system subunit K03117 tatB; sec-independent protein translocase protein TatB
D EFER_3642 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC
D EFER_2477 tatE; TatABCE protein translocation system subunit K03425 tatE; sec-independent protein translocase protein TatE
D EFER_0506 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D EFER_0020 lspA; prolipoprotein signal peptidase (signal peptidase II) K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:efe04122]
D EFER_0642 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D EFER_0651 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D EFER_3444 tusA; sulfurtransferase K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D EFER_3313 tusB; methylsulfur transfer protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D EFER_3314 tusC; methylsulfur transfer protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D EFER_3315 tusD; methylsulfur transfer protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D EFER_1106 tusE; subunit of enzyme for 2-thio modification of mnm5s2U of tRNA anticodon U K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D EFER_1797 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D EFER_2326 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D EFER_2330 moaA; molybdopterin biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D EFER_2327 moaD; molybdopterin synthase, small subunit K03636 moaD; sulfur-carrier protein
D EFER_1309 ynjE; putative exported thiosulfate sulfur transferase / thiosulfate binding protein K21028 ynjE; molybdopterin synthase sulfurtransferase [EC:2.8.1.11]
D EFER_0968 moeB; molybdopterin synthase sulfurylase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D EFER_2328 moaC; molybdopterin biosynthesis, protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D EFER_0008 mogA; molybdochelatase MogA, involved in Moco biosynthesis K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D EFER_2329 moaB; molybdopterin biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D EFER_2602 thiI; sulfurtransferase required for thiamine and 4-thiouridine biosynthesis K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D EFER_3763 thiS; sulphur carrier protein K03154 thiS; sulfur carrier protein
D EFER_3762 thiF; thiamin (thiazole moiety) biosynthesis protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:efe03018]
D EFER_2763 nudH; nucleotide hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D EFER_1844 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D EFER_3724 rhlB; ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D EFER_0285 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D EFER_3143 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D EFER_2311 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D EFER_4232 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D EFER_3141 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D EFER_3679 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D EFER_3721 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D EFER_3857 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D EFER_0010 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D EFER_4195 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D EFER_4225 hfq; HF-I, host factor for RNA phage Q beta replication K03666 hfq; host factor-I protein
D EFER_0675 ppk; polyphosphate kinase, component of RNA degradosome K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D EFER_0166 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:efe03030]
D EFER_1231 DNA polymerase III, theta subunit (modular protein) K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D EFER_0244 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D EFER_0207 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D EFER_2547 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D EFER_1828 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D EFER_2466 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D EFER_4413 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D EFER_4340 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D EFER_3996 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D EFER_4141 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D EFER_2067 Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D EFER_3007 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D EFER_4161 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D EFER_0243 rnhA; ribonuclease HI, degrades RNA of DNA-RNA hybrids K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D EFER_0206 rnhB; ribonuclease HII, degrades RNA of DNA-RNA hybrids K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D EFER_3613 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D EFER_0763 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:efe03410]
D EFER_1410 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D EFER_0494 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D EFER_2903 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D EFER_3926 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D EFER_2154 alkA; 3-methyl-adenine DNA glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D EFER_3546 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D EFER_3010 ygjF; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D EFER_1316 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D EFER_2244 nfo; endonuclease IV with intrinsic 3'-5' exonuclease activity K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D EFER_3613 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D EFER_2827 recJ; ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D EFER_0763 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:efe03420]
D EFER_1278 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D EFER_4160 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A
D EFER_2332 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
D EFER_1181 uvrC; excinuclease UvrABC, endonuclease subunit K03703 uvrC; excinuclease ABC subunit C
D EFER_3689 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D EFER_2805 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D EFER_3613 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D EFER_0763 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:efe03430]
D EFER_0334 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D EFER_4223 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D EFER_2764 mutH; methyl-directed mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH
D EFER_3689 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D EFER_2805 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D EFER_2094 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D EFER_0666 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D EFER_2603 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D EFER_1229 exoX; DNA exonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D EFER_2827 recJ; ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D EFER_4161 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D EFER_0207 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D EFER_3996 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D EFER_2547 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D EFER_2466 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D EFER_1828 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D EFER_0244 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D EFER_1231 DNA polymerase III, theta subunit (modular protein) K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D EFER_4340 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D EFER_4413 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D EFER_0763 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D EFER_3353 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:efe03440]
D EFER_2827 recJ; ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D EFER_4161 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D EFER_3995 recF; gap repair protein K03629 recF; DNA replication and repair protein RecF
D EFER_0509 recO; gap repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D EFER_2545 recR; gap repair protein K06187 recR; recombination protein RecR
D EFER_0375 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D EFER_3613 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D EFER_1211 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA
D EFER_1212 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D EFER_1209 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D EFER_3944 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D EFER_2753 recB; exonuclease V (RecBCD complex), beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D EFER_2755 recC; exonuclease V (RecBCD complex), gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D EFER_2752 recD; exonuclease V (RecBCD complex), alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D EFER_0207 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D EFER_3996 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D EFER_2547 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D EFER_2466 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D EFER_1828 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D EFER_0244 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D EFER_1231 DNA polymerase III, theta subunit (modular protein) K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D EFER_4340 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D EFER_4413 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D EFER_3837 priA; Primosome factor n' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D EFER_4254 priB; primosomal protein N K02686 priB; primosomal replication protein N
D EFER_2550 priC; primosomal replication protein N'' K04067 priC; primosomal replication protein N''
D EFER_4399 dnaT; DNA biosynthesis protein (primosomal protein I) K02317 dnaT; DNA replication protein DnaT
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:efe03250]
D EFER_3336 ppiA; peptidyl-prolyl cis-trans isomerase A (rotamase A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda [PATH:efe03258]
D EFER_4460 Minor tail protein L K26974 L; Enterobacteria phage tail tip protein L
D EFER_4461 putative tail fiber component K of prophage K26975 K; Enterobacteria phage tail tip assembly protein K
D EFER_4462 Tail assembly protein I from putative prophage K26976 I; Enterobacteria phage tail tip assembly protein I
D EFER_2676 tfaQ; putative tail fibre chaperone; Qin prophage K26980 tfa; Enterobacteria phage tail fiber assembly protein
D EFER_4467 tfaQ; putative tail fibre chaperone; Qin prophage K26980 tfa; Enterobacteria phage tail fiber assembly protein
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:efe02010]
D EFER_0748 cysP; thiosulfate transporter subunit; periplasmic-binding component of ABC superfamily K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D EFER_3856 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D EFER_0749 cysU; sulfate/thiosulfate transporter subunit; membrane component of ABC superfamily K02046 cysU; sulfate/thiosulfate transport system permease protein
D EFER_0750 cysW; sulfate/thiosulfate transporter subunit; membrane component of ABC superfamily K02047 cysW; sulfate/thiosulfate transport system permease protein
D EFER_0751 cysA; sulfate/thiosulfate transporter subunit; ATP-binding component of ABC superfamily K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D EFER_2654 tauA; taurine transporter subunit; periplasmic-binding component of ABC superfamily K15551 tauA; taurine transport system substrate-binding protein
D EFER_2652 tauC; taurine transporter subunit; membrane component of ABC superfamily K15552 tauC; taurine transport system permease protein
D EFER_2653 tauB; taurine transporter subunit; ATP-binding component of ABC superfamily K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D EFER_1080 ssuA; alkanesulfonate transporter subunit; periplasmic-binding component of ABC superfamily K15553 ssuA; sulfonate transport system substrate-binding protein
D EFER_1078 ssuC; alkanesulfonate transporter subunit; membrane component of ABC superfamily K15554 ssuC; sulfonate transport system permease protein
D EFER_1077 ssuB; alkanesulfonate transporter subunit; ATP-binding component of ABC superfamily K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D EFER_2346 modA; molybdate transporter subunit; periplasmic-binding component of ABC superfamily K02020 modA; molybdate transport system substrate-binding protein
D EFER_2345 modB; molybdate transporter subunit; membrane component of ABC superfamily K02018 modB; molybdate transport system permease protein
D EFER_2344 modC; molybdate transporter subunit; ATP-binding component of ABC superfamily K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D EFER_2349 modF; fused molybdate transporter subunits of ABC superfamily: ATP-binding components K05776 modF; molybdate transport system ATP-binding protein
D EFER_0082 tbpA; thiamin transporter subunit; periplasmic-binding component of ABC superfamily K02064 thiB; thiamine transport system substrate-binding protein
D EFER_0081 thiP; fused thiamin transporter subunits of ABC superfamily: membrane components K02063 thiP; thiamine transport system permease protein
D EFER_0080 thiQ; thiamin transporter subunit; ATP-binding component of ABC superfamily K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D EFER_1287 potD; polyamine transporter subunit; periplasmic-binding component of ABC superfamily K11069 potD; spermidine/putrescine transport system substrate-binding protein
D EFER_1288 potC; polyamine transporter subunit; membrane component of ABC superfamily K11070 potC; spermidine/putrescine transport system permease protein
D EFER_1289 potB; polyamine transporter subunit; membrane component of ABC superfamily K11071 potB; spermidine/putrescine transport system permease protein
D EFER_1290 potA; polyamine transporter subunit; ATP-binding component of ABC superfamily K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D EFER_0997 potF; putrescine transporter subunit: periplasmic-binding component of ABC superfamily K11073 potF; putrescine transport system substrate-binding protein
D EFER_1000 potI; putrescine transporter subunit: membrane component of ABC superfamily K11074 potI; putrescine transport system permease protein
D EFER_0999 potH; putrescine transporter subunit: membrane component of ABC superfamily K11075 potH; putrescine transport system permease protein
D EFER_0998 potG; putrescine transporter subunit: ATP-binding component of ABC superfamily K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D EFER_0391 proX; glycine betaine transporter subunit; periplasmic-binding component of ABC superfamily K02002 proX; glycine betaine/proline transport system substrate-binding protein
D EFER_0392 proW; glycine betaine transporter subunit; membrane component of ABC superfamily K02001 proW; glycine betaine/proline transport system permease protein
D EFER_0393 proV; glycine betaine transporter subunit; ATP-binding compoent of ABC superfamily K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D EFER_2218 yehZ; putative transporter subunit: periplasmic-binding component of ABC superfamily K05845 opuC; osmoprotectant transport system substrate-binding protein
D EFER_1447 putative ABC transporter periplasmic binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D EFER_2215 yehW; putative transporter subunit: permease component of ABC superfamily transporter K05846 opuBD; osmoprotectant transport system permease protein
D EFER_2217 yehY; putative transporter subunit: permease component of ABC superfamily K05846 opuBD; osmoprotectant transport system permease protein
D EFER_1446 putative ABC transporter membrane protein, membrane component K05846 opuBD; osmoprotectant transport system permease protein
D EFER_1448 putative ABC transporter membrane protein K05846 opuBD; osmoprotectant transport system permease protein
D EFER_1445 putative ABC transporter ATP/GTP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D EFER_2216 yehX; putative transporter subunit: ATP-binding component of ABC superfamily transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D EFER_4126 malE; maltose transporter subunit; periplasmic-binding component of ABC superfamily K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D EFER_4125 malF; maltose transporter subunit; membrane component of ABC superfamily K10109 malF; maltose/maltodextrin transport system permease protein
D EFER_4124 malG; maltose transporter subunit; membrane component of ABC superfamily K10110 malG; maltose/maltodextrin transport system permease protein
D EFER_4127 malK; fused maltose transport subunit, ATP-binding component of ABC superfamily; regulatory protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D EFER_3169 yrbC; toluene transporter subunit: membrane component of ABC superfamily K07323 mlaC; phospholipid transport system substrate-binding protein
D EFER_3170 yrbD; toluene transporter subunit: membrane component of ABC superfamily K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D EFER_3171 yrbE; toluene transporter subunit: membrane component of ABC superfamily K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D EFER_3168 yrbB; conserved hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D EFER_3172 yrbF; toluene transporter subunit: ATP-binding component of ABC superfamily K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D EFER_4050 rbsB; D-ribose transporter subunit; periplasmic-binding compoent of ABC superfamily K10439 rbsB; ribose transport system substrate-binding protein
D EFER_4049 rbsC; D-ribose transporter subunit; membrane component of ABC superfamily K10440 rbsC; ribose transport system permease protein
D EFER_4048 rbsA; fused D-ribose transporter subunits of ABC superfamily: ATP-binding components K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D EFER_4047 rbsD; putative cytoplasmic sugar-binding protein K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D EFER_1123 araF; L-arabinose transporter subunit; periplasmic-binding component of ABC superfamily K10537 araF; L-arabinose transport system substrate-binding protein
D EFER_1125 araH; fused L-arabinose transporter subunits of ABC superfamily: membrane components K10538 araH; L-arabinose transport system permease protein
D EFER_1124 araG; fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D EFER_4306 ytfQ; putative sugar transporter subunit: periplasmic-binding component of ABC superfamily K23508 ytfQ; galactofuranose transport system substrate-binding protein
D EFER_4309 yjfF; putative sugar transporter subunit: membrane component of ABC superfamily K23509 ytfT; galactofuranose transport system permease protein
D EFER_4308 ytfT; putative sugar transporter subunit: membrane component of ABC superfamily K23509 ytfT; galactofuranose transport system permease protein
D EFER_4307 ytfR; putative sugar transporter subunit: ATP-binding component of ABC superfamily K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D EFER_2235 mglB; methyl-galactoside transporter subunit; periplasmic-binding component of ABC superfamily K10540 mglB; methyl-galactoside transport system substrate-binding protein
D EFER_2233 mglC; methyl-galactoside transporter subunit; membrane component of ABC superfamily K10541 mglC; methyl-galactoside transport system permease protein
D EFER_2234 mglA; fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D EFER_4282 alsB; D-allose transporter subunit; periplasmic-binding component of ABC superfamily K10549 alsB; D-allose transport system substrate-binding protein
D EFER_4284 alsC; D-allose transporter subunit; membrane component of ABC superfamily K10550 alsC; D-allose transport system permease protein
D EFER_4283 alsA; fused D-allose transporter subunits of ABC superfamily: ATP-binding components K10551 alsA; D-allose transport system ATP-binding protein [EC:7.5.2.8]
D EFER_0342 putative ABC transporter, periplasmic sugar-binding protein precursor K17202 eryG; erythritol transport system substrate-binding protein
D EFER_2518 putative ABC transporter sugar-binding protein K17202 eryG; erythritol transport system substrate-binding protein
D EFER_0341 putative sugar transporter subunit: membrane component of ABC superfamily K17203 eryF; erythritol transport system permease protein
D EFER_2521 putative transport system permease for a carbohydrate-related molecule K17203 eryF; erythritol transport system permease protein
D EFER_0340 putative sugar transporter subunit of ABC superfamily: ATP-binding component K17204 eryE; erythritol transport system ATP-binding protein
D EFER_2520 putative transport system ATP-binding protein for a carbohydrate-related molecule K17204 eryE; erythritol transport system ATP-binding protein
D EFER_3425 ugpB; glycerol-3-phosphate transporter subunit; periplasmic-binding component of ABC superfamily K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D EFER_3424 ugpA; glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D EFER_3423 ugpE; glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D EFER_3422 ugpC; glycerol-3-phosphate transporter subunit; ATP-binding component of ABC superfamily K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D EFER_4026 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein
D EFER_4025 pstC; phosphate transporter subunit; membrane component of ABC superfamily K02037 pstC; phosphate transport system permease protein
D EFER_4024 pstA; phosphate transporter subunit; membrane component of ABC superfamily K02038 pstA; phosphate transport system permease protein
D EFER_4023 pstB; phosphate transporter subunit; ATP-binding component of ABC superfamily K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D EFER_0853 argT; lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D EFER_0856 hisM; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10015 hisM; histidine transport system permease protein
D EFER_0855 hisQ; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10016 hisQ; histidine transport system permease protein
D EFER_0857 hisP; histidine/lysine/arginine/ornithine transporter subunit; ATP-binding component of ABC superfamily K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D EFER_0854 hisJ; histidine/lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily K10014 hisJ; histidine transport system substrate-binding protein
D EFER_0953 glnH; glutamine transporter subunit; periplasmic binding component of ABC superfamily K10036 glnH; glutamine transport system substrate-binding protein
D EFER_0952 glnP; glutamine transporter subunit; membrane component of ABC superfamily K10037 glnP; glutamine transport system permease protein
D EFER_0951 glnQ; glutamine transporter subunit; ATP-binding component of ABC superfamily K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D EFER_4217 artJ; arginine-binding periplasmic protein 2 precursor K09996 artJ; arginine transport system substrate-binding protein
D EFER_1003 artJ; arginine transporter subunit; periplasmic-binding component of ABC superfamily K09996 artJ; arginine transport system substrate-binding protein
D EFER_1006 artI; arginine transporter subunit; periplasmic-binding component of ABC superfamily K09997 artI; arginine transport system substrate-binding protein
D EFER_1004 artM; arginine transporter subunit; membrane component of ABC superfamily K09998 artM; arginine transport system permease protein
D EFER_1005 artQ; arginine transporter subunit; membrane component of ABC superfamily K09999 artQ; arginine transport system permease protein
D EFER_1007 artP; arginine transporter subunit; ATP-binding component of ABC superfamily K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D EFER_2448 gltI; glutamate and aspartate transporter subunit; periplasmic-binding component of ABC superfamily K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D EFER_2450 gltK; glutamate and aspartate transporter subunit; membrane component of ABC superfamily K10002 gltK; glutamate/aspartate transport system permease protein
D EFER_2449 gltJ; glutamate and aspartate transporter subunit; membrane component of ABC superfamily K10003 gltJ; glutamate/aspartate transport system permease protein
D EFER_2451 gltL; glutamate and aspartate transporter subunit; ATP-binding component of ABC superfamily K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D EFER_3247 aapJ; amino-acid transporter subunit; periplasmic-binding component of ABC superfamily K09969 aapJ; general L-amino acid transport system substrate-binding protein
D EFER_3248 aapQ; amino-acid transporter subunit; membrane component of ABC superfamily K09970 aapQ; general L-amino acid transport system permease protein
D EFER_3249 aapM; amino-acid transporter subunit; membrane component of ABC superfamily K09971 aapM; general L-amino acid transport system permease protein
D EFER_3250 aapP; amino-acid transporter subunit; ATP-binding component of ABC superfamily K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D EFER_1174 fliY; cystine transporter subunit; periplasmic-binding component of ABC superfamily K02424 tcyA; L-cystine transport system substrate-binding protein
D EFER_1176 yecS; putative transporter subunit: permease component of ABC superfamily transporter K10009 tcyB; L-cystine transport system permease protein
D EFER_1177 yecC; putative transporter subunit: ATP-binding component of ABC superfamily transporter K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D EFER_3431 livK; leucine transporter subunit; periplasmic-binding component of ABC superfamily K01999 livK; branched-chain amino acid transport system substrate-binding protein
D EFER_3433 livJ; leucine/isoleucine/valine transporter subunit; periplasmic-binding component of ABC superfamily K01999 livK; branched-chain amino acid transport system substrate-binding protein
D EFER_3430 livH; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01997 livH; branched-chain amino acid transport system permease protein
D EFER_3429 livM; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01998 livM; branched-chain amino acid transport system permease protein
D EFER_3428 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein
D EFER_3427 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein
D EFER_0221 metQ; DL-methionine transporter subunit; periplasmic-binding component of ABC superfamily K02073 metQ; D-methionine transport system substrate-binding protein
D EFER_0222 metI; DL-methionine transporter subunit; membrane component protein of ABC superfamily K02072 metI; D-methionine transport system permease protein
D EFER_0223 metN; DL-methionine transporter subunit; ATP-binding component of ABC superfamily K02071 metN; D-methionine transport system ATP-binding protein
D EFER_1712 oppA; oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily K15580 oppA; oligopeptide transport system substrate-binding protein
D EFER_1647 mppA; murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit; periplasmic-binding component of ABC superfamily K15580 oppA; oligopeptide transport system substrate-binding protein
D EFER_1711 oppB; oligopeptide transporter subunit; membrane component of ABC superfamily K15581 oppB; oligopeptide transport system permease protein
D EFER_1710 oppC; oligopeptide transporter subunit; membrane component of ABC superfamily K15582 oppC; oligopeptide transport system permease protein
D EFER_1709 oppD; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K15583 oppD; oligopeptide transport system ATP-binding protein
D EFER_1708 oppF; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K10823 oppF; oligopeptide transport system ATP-binding protein
D EFER_3541 dppA; dipeptide transporter; periplasmic-binding component of ABC superfamily K12368 dppA; dipeptide transport system substrate-binding protein
D EFER_3540 dppB; dipeptide transporter; membrane component of ABC superfamily K12369 dppB; dipeptide transport system permease protein
D EFER_3539 dppC; dipeptide transporter; membrane component of ABC superfamily K12370 dppC; dipeptide transport system permease protein
D EFER_3538 dppD; dipeptide transporter; ATP-binding component of ABC superfamily K12371 dppD; dipeptide transport system ATP-binding protein
D EFER_3537 dppF; dipeptide transporter; ATP-binding component of ABC superfamily K12372 dppF; dipeptide transport system ATP-binding protein
D EFER_1660 sapA; antimicrobial peptide transporter subunit; periplasmic-binding component of ABC superfamily transporter K19226 sapA; cationic peptide transport system substrate-binding protein
D EFER_1661 sapB; antimicrobial peptide transporter subunit; permease component of ABC superfamily transporter K19227 sapB; cationic peptide transport system permease protein
D EFER_1662 sapC; antimicrobial peptide transporter subunit; permease component of ABC superfamily transporter K19228 sapC; cationic peptide transport system permease protein
D EFER_1663 sapD; antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily transporter K19229 sapD; cationic peptide transport system ATP-binding protein
D EFER_1664 sapF; antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily transporter K19230 sapF; cationic peptide transport system ATP-binding protein
D EFER_0971 yliB; putative peptide transporter subunit: periplasmic-binding component of ABC superfamily K13889 gsiB; glutathione transport system substrate-binding protein
D EFER_0972 yliC; putative peptide transporter permease subunit: membrane component of ABC superfamily K13890 gsiC; glutathione transport system permease protein
D EFER_0973 yliD; putative peptide transporter permease subunit: membrane component of ABC superfamily K13891 gsiD; glutathione transport system permease protein
D EFER_0970 yliA; putative peptide transport fused subunits of ABC superfamily: ATP-binding components K13892 gsiA; glutathione transport system ATP-binding protein
D EFER_2267 yejA; putative oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily transporter K13893 yejA; microcin C transport system substrate-binding protein
D EFER_2268 yejB; putative oligopeptide transporter subunit; permease component of ABC superfamily K13894 yejB; microcin C transport system permease protein
D EFER_2269 yejE; putative oligopeptide transporter subunit; permease component of ABC superfamily transporter K13895 yejE; microcin C transport system permease protein
D EFER_2270 yejF; putative fused oligopeptide transporter subunits of ABC superfamily: ATP-binding components K13896 yejF; microcin C transport system ATP-binding protein
D EFER_2502 fepB; iron-enterobactin transporter subunit; periplasmic-binding component of ABC superfamily K23185 fepB; ferric enterobactin transport system substrate-binding protein
D EFER_2504 fepD; iron-enterobactin transporter subunit; membrane component of ABC superfamily K23186 fepD; iron-siderophore transport system permease protein
D EFER_2505 fepG; iron-enterobactin transporter subunit; membrane component of ABC superfamily K23187 fepG; iron-siderophore transport system permease protein
D EFER_2506 fepC; iron-enterobactin transporter subunit; ATP-binding component of ABC superfamily K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D EFER_0175 fhuD; iron-hydroxamate transporter subunit; periplasmic-binding component of ABC superfamily K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D EFER_0176 fhuB; fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components K23228 fhuB; ferric hydroxamate transport system permease protein
D EFER_0174 fhuC; iron-hydroxamate transporter subunit; ATP-binding component of ABC superfamily K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D EFER_0181 btuF; vitamin B12 transporter subunit: periplasmic-binding component of ABC superfamily K06858 btuF; vitamin B12 transport system substrate-binding protein
D EFER_1354 btuC; vitamin B12 transporter subunit: membrane component of ABC superfamily K06073 btuC; vitamin B12 transport system permease protein
D EFER_1355 btuD; Vitamin B12 ABC transporter K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D EFER_1215 znuA; zinc transporter subunit: periplasmic-binding component of ABC superfamily K09815 znuA; zinc transport system substrate-binding protein
D EFER_1213 znuB; zinc transporter subunit: membrane component of ABC superfamily K09816 znuB; zinc transport system permease protein
D EFER_1214 znuC; zinc transporter subunit: ATP-binding component of ABC superfamily K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D EFER_1561 lsrB; AI2 transporter; periplasmic-binding component of ABC superfamily K10555 lsrB; AI-2 transport system substrate-binding protein
D EFER_1563 lsrC; AI2 transporter; membrane component of ABC superfamily K10556 lsrC; AI-2 transport system permease protein
D EFER_1562 lsrD; AI2 transporter; membrane component of ABC superfamily K10557 lsrD; AI-2 transport system permease protein
D EFER_1564 ego; fused AI2 transporter subunits of ABC superfamily: ATP-binding components K10558 lsrA; AI-2 transport system ATP-binding protein
D EFER_1280 lolC; outer membrane-specific lipoprotein transporter subunit; membrane component of ABC superfamily K09808 lolC_E; lipoprotein-releasing system permease protein
D EFER_1282 lolE; outer membrane-specific lipoprotein transporter subunit; membrane component of ABC superfamily K09808 lolC_E; lipoprotein-releasing system permease protein
D EFER_1281 lolD; outer membrane-specific lipoprotein transporter subunit; ATP-binding component of ABC superfamily K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D EFER_2288 ccmD; cytochrome c biogenesis protein K02196 ccmD; heme exporter protein D
D EFER_2289 ccmC; heme exporter subunit; membrane component of ABC superfamily K02195 ccmC; heme exporter protein C
D EFER_2290 ccmB; heme exporter subunit; membrane component of ABC superfamily K02194 ccmB; heme exporter protein B
D EFER_2291 ccmA; heme exporter subunit; ATP-binding component of ABC superfamily K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D EFER_4343 yjgP; conserved hypothetical protein; putative inner membrane protein K07091 lptF; lipopolysaccharide export system permease protein
D EFER_4344 yjgQ; conserved hypothetical protein; putative inner membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D EFER_3178 lptB; putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D EFER_3435 ftsX; transporter subunit: membrane component of ABC superfamily K09811 ftsX; cell division transport system permease protein
D EFER_3436 ftsE; transporter subunit: ATP-binding component of ABC superfamily K09812 ftsE; cell division transport system ATP-binding protein
D EFER_1058 msbA; fused lipid transporter subunits of ABC superfamily: membrane component; ATP-binding component K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D EFER_2569 mdlA; putative fused ATPase and permease component of metabolite transporter K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D EFER_2568 mdlB; putative fused ATPase and permease component of metabolite ABC transporter K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D EFER_0543 siiBA; type I secretion membrane protein, ATP binding protein, protein export K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D EFER_3483 siiBB; type I secretion membrane protein, ATP-binding protein, protein export K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D EFER_1034 cydC; fused cysteine transporter subunits of ABC superfamily: membrane component; ATP-binding component K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D EFER_1035 cydD; fused cysteine transporter subunits of ABC superfamily: membrane component; ATP-binding component K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D EFER_1027 macB; fused macrolide transporter subunits of ABC superfamily: ATP-binding component; membrane component K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D EFER_0949 yojI; fused multidrug transport subunits of ABC superfamily transporter: permease component/ATP-binding component K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
D EFER_1572 yddA; putative multidrug transporter fused subunits of ABC superfamily transporter: permease component; ATP-binding component K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:efe02060]
D EFER_0756 ptsI; PEP-protein phosphotransferase of PTS system (enzyme I) K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D EFER_0757 ptsH; phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) K02784 ptsH; phosphocarrier protein HPr
D EFER_3475 putative phosphocarrier HPr protein of a carbohydrate phosphotransferase system K02784 ptsH; phosphocarrier protein HPr
D EFER_0755 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D EFER_1826 ptsG; fused glucose-specific PTS enzymes: IIB component; IIC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D EFER_2430 nagE; fused N-acetyl glucosamine specific PTS enzymes: IIC component; IIB component; IIA component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D EFER_4020 bglF; fused beta-glucoside-specific PTS enzymes: IIA component; IIB component; IIC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D EFER_0362 ascF; fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component; IIC component K02753 ascF; beta-glucoside (arbutin/salicin/cellobiose) PTS system EIICB component [EC:2.7.1.-]
D EFER_3978 putative PTS system alpha-glucoside-specific EIICB component K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D EFER_4322 treB; fused trehalose(maltose)-specific PTS enzyme: IIB component; IIC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D EFER_0743 murP; putative fused PTS enzymes: IIB component; IIC component K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D EFER_2865 cmtB; putative mannitol-specific enzyme IIA component of PTS K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D EFER_2864 cmtA; fused mannitol-specific PTS enzymes: IIB component; IIC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D EFER_3590 mtlA; fused mannitol-specific PTS enzymes: IIA components; IIB components; IIC components K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D EFER_2373 mngA; fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component; IIB component; IIC component K11200 mngA; 2-O-A-mannosyl-D-glycerate PTS system EIIABC component [EC:2.7.1.195]
D EFER_1331 chbA; N,N'-diacetylchitobiose-specific enzyme IIA component of PTS K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D EFER_3959 putative chitobiose/cellobiose phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D EFER_1329 chbB; N,N'-diacetylchitobiose-specific enzyme IIB component of PTS K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D EFER_3956 putative PTS subunit cellobiose/Chitosan phosphotransferase enzyme IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D EFER_1330 chbC; N,N'-diacetylchitobiose-specific enzyme IIC component of PTS K02761 celB; cellobiose PTS system EIIC component
D EFER_3957 putative PTS subunit, cellobiose/chitosan-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D EFER_1259 manX; fused mannose-specific PTS enzymes: IIA component; IIB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D EFER_1258 manY; mannose-specific enzyme IIC component of PTS K02795 manY; mannose PTS system EIIC component
D EFER_1257 manZ; mannose-specific enzyme IID component of PTS K02796 manZ; mannose PTS system EIID component
D EFER_4081 sorbose-specific phosphotransferase enzyme IIA component (PTS system) K02812 sorF; sorbose PTS system EIIA component [EC:2.7.1.206]
D EFER_4080 sorbose-specific phosphotransferase enzyme IIB component (PTS system) K02813 sorB; sorbose PTS system EIIB component [EC:2.7.1.206]
D EFER_4079 sorbose permease IIC component (PTS system) K02814 sorA; sorbose PTS system EIIC component
D EFER_4078 sorbose permease IID component K02815 sorM; sorbose PTS system EIID component
D EFER_4357 putative phosphotransferase system enzyme subunit (N-acetyl-galactosamine / galactosamine PTS system enzyme IIA component) K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D EFER_4360 agaV; N-acetylgalactosamine-specific enzyme IIB component of PTS K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D EFER_4359 putative enzyme IIC component of PTS K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D EFER_4358 putative hexose/hexosamine family PTS permease IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D EFER_4353 agaB; N-acetylgalactosamine-specific enzyme IIB component of PTS K10984 agaB; galactosamine PTS system EIIB component [EC:2.7.1.-]
D EFER_4352 agaC; N-acetylgalactosamine-specific enzyme IIC component of PTS K10985 agaC; galactosamine PTS system EIIC component
D EFER_4351 agaD; N-acetylgalactosamine-specific enzyme IID component of PTS K10986 agaD; galactosamine PTS system EIID component
D EFER_3471 putative phosphotransferase system enzyme subunit IIA K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D EFER_3472 putative phosphotransferase system enzyme IIB K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]
D EFER_3473 putative phosphotransferase system permease component IIC K02775 gatC; galactitol PTS system EIIC component
D EFER_4248 ulaC; L-ascorbate-specific enzyme IIA component of PTS K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D EFER_0866 putative phosphotransferase enzyme IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D EFER_4247 ulaB; L-ascorbate-specific enzyme IIB component of PTS K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D EFER_0867 putative phosphotransferase transport system, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D EFER_4246 ulaA; L-ascorbate-specific enzyme IIC component of PTS K03475 ulaA; ascorbate PTS system EIIC component
D EFER_0868 putative phosphotransferase transport system, IIC component K03475 ulaA; ascorbate PTS system EIIC component
D EFER_2256 fruB; fused fructose-specific PTS enzymes: IIA component; HPr component K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D EFER_2254 fruA; fused fructose-specific PTS enzymes: IIB component; IIC components K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D EFER_2255 fruK; fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D EFER_2762 ptsP; fused PTS enzyme: PEP-protein phosphotransferase (enzyme I); GAF domain containing protein K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D EFER_3183 npr; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) K08485 ptsO; phosphocarrier protein NPr
D EFER_3181 ptsN; sugar-specific enzyme IIA component of PTS K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:efe03070]
D EFER_2976 tolC; transport channel K12340 tolC; outer membrane protein
D EFER_2915 epsD; general secretion pathway protein D precursor K02453 gspD; general secretion pathway protein D
D EFER_2914 yghF; putative secretion pathway protein, C-type protein K02452 gspC; general secretion pathway protein C
D EFER_2917 epsF; General secretion pathway protein F K02455 gspF; general secretion pathway protein F
D EFER_2918 putative general secretion pathway protein G precursor (epsG-like) K02456 gspG; general secretion pathway protein G
D EFER_2919 conserved hypothetical protein; putative exported protein K02457 gspH; general secretion pathway protein H
D EFER_2920 putative type II secretion protein (GspI-like) K02458 gspI; general secretion pathway protein I
D EFER_2921 conserved hypothetical protein; putative exported protein K02459 gspJ; general secretion pathway protein J
D EFER_2922 putative type II secretion protein (GspK-like) K02460 gspK; general secretion pathway protein K
D EFER_2923 yghE; putative secretion pathway protein, L-type protein K02461 gspL; general secretion pathway protein L
D EFER_2924 yghD; putative secretion pathway M-type protein, membrane anchored K02462 gspM; general secretion pathway protein M
D EFER_2916 epsE; general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D EFER_2617 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D EFER_2616 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D EFER_3773 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D EFER_3152 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D EFER_3283 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D EFER_2618 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D EFER_4002 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D EFER_0120 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D EFER_0119 secM; regulator of secA translation K13301 secM; secretion monitor
D EFER_3437 ftsY; fused Signal Recognition Particle (SRP) receptor: membrane binding protein; conserved hypothetical protein K03110 ftsY; fused signal recognition particle receptor
D EFER_3603 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D EFER_0462 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D EFER_3644 tatA; TatABCE protein translocation system subunit K03116 tatA; sec-independent protein translocase protein TatA
D EFER_3643 tatB; TatABCE protein translocation system subunit K03117 tatB; sec-independent protein translocase protein TatB
D EFER_3642 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC
D EFER_2477 tatE; TatABCE protein translocation system subunit K03425 tatE; sec-independent protein translocase protein TatE
D EFER_1978 conserved hypothetical protein, putative VgrG/E protein associated with Rhs elements K11904 vgrG; type VI secretion system secreted protein VgrG
D EFER_3027 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D EFER_1977 Conserved hypothetical protein Aec16 (Hcp-like) K11903 hcp; type VI secretion system secreted protein Hcp
D EFER_1970 conserved hypothetical protein, putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D EFER_1964 IcmF-like protein K11891 impL; type VI secretion system protein ImpL
D EFER_1968 Putative membrane protein Aec26 K11892 impK; type VI secretion system protein ImpK
D EFER_1967 putative ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity K11907 vasG; type VI secretion system protein VasG
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:efe02020]
D EFER_2626 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D EFER_2627 phoB; DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D EFER_2640 phoA; bacterial alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D EFER_4026 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein
D EFER_1801 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D EFER_1800 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D EFER_4464 Putative Lom-like outer membrane protein of prophage K07804 pagC; putatice virulence related protein PagC
D EFER_3372 envZ; sensory histidine kinase in two-component regulatory system with OmpR K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D EFER_3373 ompR; DNA-binding response regulator in two-component regulatory system with EnvZ K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D EFER_0945 ompC; outer membrane porin protein C K09475 ompC; outer membrane pore protein C
D EFER_1073 ompF; outer membrane porin 1a (Ia;b;F) K09476 ompF; outer membrane pore protein F
D EFER_1948 Outer membrane protein N precursor (porin) K09476 ompF; outer membrane pore protein F
D EFER_3861 cpxA; sensory histidine kinase in two-component regulatory system with CpxR K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D EFER_3860 cpxR; DNA-binding response regulator in two-component regulatory system with CpxA K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D EFER_4378 conserved hypothetical protein; putative exported protein K25864 mzrA; modulator protein MzrA
D EFER_1428 rstB; sensory histidine kinase in two-component regulatory system with RstA K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D EFER_1429 rstA; DNA-binding response regulator in two-component regulatory system with RstB K07661 rstA; two-component system, OmpR family, response regulator RstA
D EFER_0184 degP; serine endoprotease (protease Do), membrane-associated K04771 degP; serine protease Do [EC:3.4.21.107]
D EFER_4498 creC; sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulon K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D EFER_4497 creB; DNA-binding response regulator in two-component regulatory system with CreC K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D EFER_2165 baeS; sensory histidine kinase in two-component regulatory system with BaeR K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D EFER_2166 baeR; DNA-binding response regulator in two-component regulatory system with BaeS K07664 baeR; two-component system, OmpR family, response regulator BaeR
D EFER_2161 mdtA; multidrug efflux system, subunit A K07799 mdtA; membrane fusion protein, multidrug efflux system
D EFER_2162 mdtB; multidrug efflux system, subunit B K07788 mdtB; multidrug efflux pump
D EFER_2163 mdtC; multidrug efflux system, subunit C K07789 mdtC; multidrug efflux pump
D EFER_2164 mdtD; multidrug efflux system protein K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D EFER_0708 acrD; aminoglycoside/multidrug efflux system K18324 acrD; multidrug efflux pump
D EFER_4171 basS; sensory histidine kinase in two-component regulatory system with BasR K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D EFER_4172 basR; DNA-binding response regulator in two-component regulatory system with BasS K07771 basR; two-component system, OmpR family, response regulator BasR
D EFER_0916 yfbE; uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D EFER_2541 cusS; sensory histidine kinase in two-component regulatory system with CusR, senses copper ions K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D EFER_2540 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D EFER_2538 cusC; copper/silver efflux system, outer membrane component K07796 cusC; outer membrane protein, copper/silver efflux system
D EFER_2537 cusF; periplasmic copper-binding protein K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF
D EFER_2536 cusB; copper/silver efflux system, membrane fusion protein K07798 cusB; membrane fusion protein, copper/silver efflux system
D EFER_2534 cusA; copper/silver efflux system, membrane component K07787 cusA; copper/silver efflux system protein
D EFER_2968 qseC; Sensor protein qseC sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D EFER_2967 qseB; DNA-binding response regulator in two-component regulatory system with QseC K07666 qseB; two-component system, OmpR family, response regulator QseB
D EFER_1129 flhD; DNA-binding transcriptional dual regulator with FlhC (modular protein) K02403 flhD; flagellar transcriptional activator FlhD
D EFER_1130 flhC; DNA-binding transcriptional dual regulator with FlhD K02402 flhC; flagellar transcriptional activator FlhC
D EFER_1170 fliC; Flagellin (Phase-1-C flagellin) K02406 fliC; flagellin
D EFER_1171 fliA; RNA polymerase, sigma 28 (sigma F) factor K02405 fliA; RNA polymerase sigma factor FliA
D EFER_1131 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA
D EFER_2415 kdpD; fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein; sensory histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D EFER_2416 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D EFER_2412 kdpA; potassium translocating ATPase, subunit A K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D EFER_2413 kdpB; potassium translocating ATPase, subunit B K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D EFER_2414 kdpC; potassium translocating ATPase, subunit C K01548 kdpC; potassium-transporting ATPase KdpC subunit
D EFER_1188 torS; hybrid sensory histidine kinase in two-component regulatory system with TorR K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D EFER_1190 torR; DNA-binding response regulator in two-component regulatory system with TorS K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR
D EFER_1191 torC; trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D EFER_1192 torA; trimethylamine N-oxide (TMAO) reductase I, catalytic subunit K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D EFER_1193 torD; chaperone involved in maturation of TorA subunit of trimethylamine N-oxide reductase system I K03533 torD; TorA specific chaperone
D EFER_3187 arcB; hybrid sensory histidine kinase in two-component regulatory system with ArcA K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D EFER_4500 arcA; DNA-binding response regulator in two-component regulatory system with ArcB or CpxA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D EFER_3654 conserved hypothetical protein; putative membrane protein K07793 tctA; putative tricarboxylic transport membrane protein
D EFER_0273 conserved hypothetical protein; putative membrane protein K07793 tctA; putative tricarboxylic transport membrane protein
D EFER_0078 putative membrane protein K07793 tctA; putative tricarboxylic transport membrane protein
D EFER_0077 putative membrane protein K07794 tctB; putative tricarboxylic transport membrane protein
D EFER_0274 hypothetical protein; putative membrane protein K07794 tctB; putative tricarboxylic transport membrane protein
D EFER_3653 putative permease subunit K07794 tctB; putative tricarboxylic transport membrane protein
D EFER_0272 conserved hypothetical protein; putative periplasmic binding protein K07795 tctC; putative tricarboxylic transport membrane protein
D EFER_3652 putative periplasmic binding protein K07795 tctC; putative tricarboxylic transport membrane protein
D EFER_3997 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator K02313 dnaA; chromosomal replication initiator protein
D EFER_2512 fepA; iron-enterobactin outer membrane transporter K19611 fepA; ferric enterobactin receptor
D EFER_0027 citA; sensory histidine kinase in two-component regulatory system with citB K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D EFER_0026 citB; DNA-binding response regulator in two-component regulatory system with citA K07702 dpiA; two-component system, CitB family, response regulator CitB
D EFER_0032 citC; citrate lyase synthetase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]
D EFER_0033 citD; citrate lyase, acyl carrier (gamma) subunit K01646 citD; citrate lyase subunit gamma (acyl carrier protein)
D EFER_0034 citE; citrate lyase, citryl-ACP lyase (beta) subunit K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D EFER_0035 citF; citrate lyase, citrate-ACP transferase (alpha) subunit K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10]
D EFER_0036 citX; apo-citrate lyase phosphoribosyl-dephospho-CoA transferase K05964 citX; holo-ACP synthase [EC:2.7.7.61]
D EFER_3126 putative triphosphoribosyl-dephospho-CoA transferase K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D EFER_0037 citG; triphosphoribosyl-dephospho-CoA transferase K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D EFER_4179 dcuS; sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3]
D EFER_4178 dcuR; DNA-binding response regulator in two-component regulatory system with DcuS K07703 dcuR; two-component system, CitB family, response regulator DcuR
D EFER_4177 dcuB; C4-dicarboxylate antiporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D EFER_1496 sfcA; malate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D EFER_1738 narX; sensory histidine kinase in two-component regulatory system with NarL K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D EFER_1739 narL; DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D EFER_0709 narQ; sensory histidine kinase in two-component regulatory system with NarP (NarL) K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D EFER_2283 narP; DNA-binding response regulator in two-component regulatory system with NarQ or NarX K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D EFER_1736 narG; nitrate reductase 1, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D EFER_1735 narH; nitrate reductase 1, beta (Fe-S) subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D EFER_1733 narI; nitrate reductase 1, gamma (cytochrome b(NR)) subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D EFER_1734 narJ; molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1 K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D EFER_1489 fdnG; formate dehydrogenase-N, alpha subunit, nitrate-inducible K08348 fdnG; formate dehydrogenase-N, alpha subunit [EC:1.17.5.3]
D EFER_1491 fdnH; formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible K08349 fdnH; formate dehydrogenase-N, beta subunit
D EFER_1492 fdnI; formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible K08350 fdnI; formate dehydrogenase-N, gamma subunit
D EFER_4208 frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D EFER_4207 frdB; fumarate reductase (anaerobic), Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D EFER_4206 frdC; fumarate reductase (anaerobic), membrane anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D EFER_4205 frdD; fumarate reductase (anaerobic), membrane anchor subunit K00247 frdD; succinate dehydrogenase subunit D
D EFER_3964 uhpC; membrane protein regulates uhpT expression K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D EFER_3965 uhpB; sensory histidine kinase in two-component regulatory sytem with UhpA K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D EFER_3966 uhpA; DNA-binding response regulator in two-component regulatory system wtih UhpB K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D EFER_3963 uhpT; hexose phosphate transporter K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D EFER_0220 rcsF; conserved hypothetical protein; putative outer membrane protein, signal K06080 rcsF; RcsF protein
D EFER_0942 rcsC; hybrid sensory kinase in two-component regulatory system with RcsB and YojN K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D EFER_0944 rcsD; phosphotransfer intermediate protein in two-component regulatory system with RcsBC K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D EFER_1936 rcsA; DNA-binding transcriptional activator, co-regulator with RcsB K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D EFER_0943 rcsB; DNA-binding response regulator in two-component regulatory system with RcsC and YojN K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D EFER_0278 barA; hybrid sensory histidine kinase, in two-component regulatory system with UvrY K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D EFER_1180 uvrY; DNA-binding response regulator in two-component regulatory system with BarA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D EFER_1178 sdiA; DNA-binding transcriptional activator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D EFER_0378 csrA; pleiotropic regulatory protein for carbon source metabolism K03563 csrA; carbon storage regulator
D EFER_4204 ampC; beta-lactamase/D-alanine carboxypeptidase K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D EFER_1135 putative Type I pilus protein CsuA/B K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D EFER_1140 conserved hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D EFER_1136 conserved hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D EFER_1137 conserved hypothetical protein K07346 fimC; fimbrial chaperone protein
D EFER_3403 putative fimbria chaperone protein precursor K07346 fimC; fimbrial chaperone protein
D EFER_3399 putative periplasmic pilin chaperone K07346 fimC; fimbrial chaperone protein
D EFER_3402 putative outer membrane export usher protein aufC K07347 fimD; outer membrane usher protein
D EFER_1138 conserved hypothetical protein K07347 fimD; outer membrane usher protein
D EFER_0161 htrE; outer membrane usher protein K07347 fimD; outer membrane usher protein
D EFER_2194 putative Paral outer membrane protein, putative exported protein K07347 fimD; outer membrane usher protein
D EFER_0189 glnD; uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D EFER_0522 glnB; regulatory protein P-II for glutamine synthetase K04751 glnB; nitrogen regulatory protein P-II 1
D EFER_3904 glnL; sensory histidine kinase in two-component regulatory system with GlnG K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D EFER_3905 glnG; fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator; sigma54 interaction protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D EFER_3903 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D EFER_3751 zraS; sensory histidine kinase in two-component regulatory system with ZraR K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D EFER_3750 zraR; fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator; sigma54 interaction protein K07713 zraR; two-component system, NtrC family, response regulator HydG
D EFER_3752 zraP; Zn-binding periplasmic protein K07803 zraP; zinc resistance-associated protein
D EFER_0941 atoS; sensory histidine kinase in two-component regulatory system with AtoC K07710 atoS; two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3]
D EFER_3536 putative transcriptional regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D EFER_0938 atoD; acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D EFER_0937 atoA; acetyl-CoA:acetoacetyl-CoA transferase, beta subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
D EFER_0936 atoE; short chain fatty acid transporter K02106 atoE; short-chain fatty acids transporter
D EFER_0935 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_2775 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_4156 putative C4-dicarboxylate transport sensor protein (dctB-like) K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D EFER_4155 dctD; C4-dicarboxylate transport transcriptional regulatory protein K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D EFER_3513 dctA; C4-dicarboxylic acid, orotate and citrate transporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D EFER_3179 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D EFER_0519 yfhK; putative sensory kinase in two-component system K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D EFER_0521 yfhA; putative DNA-binding response regulator in two-component system K07715 glrR; two-component system, NtrC family, response regulator GlrR
D EFER_misc_RNA_14 tke1; tke1 K15841 glmY; small regulatory RNA GlmY
D EFER_1110 hyaA; hydrogenase 1, small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D EFER_2940 hybO; hydrogenase 2, small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D EFER_1111 hyaB; hydrogenase 1, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D EFER_2937 hybC; hydrogenase 2, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D EFER_1112 hyaC; hydrogenase 1, b-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D EFER_1142 cheR; chemotaxis regulator, protein-glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D EFER_3055 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D EFER_1141 tar; methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D EFER_3024 aer; fused signal transducer for aerotaxis sensory component; methyl accepting chemotaxis component K03776 aer; aerotaxis receptor
D EFER_1134 cheW; purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D EFER_1133 cheA; fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase; signal sensing protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D EFER_1144 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D EFER_1143 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D EFER_0899 putative chemotaxis protein (cheV-like) K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D EFER_1531 putative C4-dicarboxylate transporter, small permease protein, putative Tripartite ATP-independent transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D EFER_1529 Putative TRAP dicarboxylate transporter, DctM subunit precursor, putative transmembrane protein K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D EFER_2451 gltL; glutamate and aspartate transporter subunit; ATP-binding component of ABC superfamily K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D EFER_2450 gltK; glutamate and aspartate transporter subunit; membrane component of ABC superfamily K10002 gltK; glutamate/aspartate transport system permease protein
D EFER_2449 gltJ; glutamate and aspartate transporter subunit; membrane component of ABC superfamily K10003 gltJ; glutamate/aspartate transport system permease protein
D EFER_2448 gltI; glutamate and aspartate transporter subunit; periplasmic-binding component of ABC superfamily K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D EFER_3330 crp; DNA-binding transcriptional dual regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D EFER_1550 yneH; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D EFER_2818 ybaS; amidase, possibly glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D EFER_2371 cydA; cytochrome d terminal oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D EFER_1185 appC; cytochrome bd-II oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D EFER_2370 cydB; cytochrome d terminal oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D EFER_1186 appB; cytochrome bd-II oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D EFER_2976 tolC; transport channel K12340 tolC; outer membrane protein
D EFER_2146 wza; lipoprotein required for capsular polysaccharide translocation through the outer membrane K01991 wza; polysaccharide biosynthesis/export protein
D EFER_2145 wzb; protein-tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D EFER_2144 wzc; protein-tyrosine kinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D EFER_3718 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D EFER_3717 rffD; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D EFER_2341 ybhC; pectin methylesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D EFER_1858 flgM; Negative regulator of flagellin synthesis (Anti-sigma-28 factor) K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D EFER_2418 speF; ornithine decarboxylase isozyme, inducible K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D EFER_2908 speC; ornithine decarboxylase, constitutive K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:efe02024]
D EFER_0382 luxS; S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D EFER_4225 hfq; HF-I, host factor for RNA phage Q beta replication K03666 hfq; host factor-I protein
D EFER_1692 trpE; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D EFER_0468 aroF; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D EFER_1360 aroH; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D EFER_2356 aroG; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D EFER_2968 qseC; Sensor protein qseC sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D EFER_2967 qseB; DNA-binding response regulator in two-component regulatory system with QseC K07666 qseB; two-component system, OmpR family, response regulator QseB
D EFER_0519 yfhK; putative sensory kinase in two-component system K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D EFER_0521 yfhA; putative DNA-binding response regulator in two-component system K07715 glrR; two-component system, NtrC family, response regulator GlrR
D EFER_1129 flhD; DNA-binding transcriptional dual regulator with FlhC (modular protein) K02403 flhD; flagellar transcriptional activator FlhD
D EFER_1130 flhC; DNA-binding transcriptional dual regulator with FlhD K02402 flhC; flagellar transcriptional activator FlhC
D EFER_2416 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D EFER_1178 sdiA; DNA-binding transcriptional activator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D EFER_1575 gadB; glutamate decarboxylase B, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D EFER_2817 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D EFER_1577 gadC; glutamate:gamma-aminobutyric acid antiporter K20265 gadC; glutamate:GABA antiporter
D EFER_1561 lsrB; AI2 transporter; periplasmic-binding component of ABC superfamily K10555 lsrB; AI-2 transport system substrate-binding protein
D EFER_1563 lsrC; AI2 transporter; membrane component of ABC superfamily K10556 lsrC; AI-2 transport system permease protein
D EFER_1562 lsrD; AI2 transporter; membrane component of ABC superfamily K10557 lsrD; AI-2 transport system permease protein
D EFER_1564 ego; fused AI2 transporter subunits of ABC superfamily: ATP-binding components K10558 lsrA; AI-2 transport system ATP-binding protein
D EFER_1566 lsrK; autoinducer AI-2 kinase K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189]
D EFER_1565 lsrR; DNA-binding transcriptional regulator K11531 lsrR; lsr operon transcriptional repressor
D EFER_1560 lsrF; putative aldolase K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245]
D EFER_1559 lsrG; conserved hypothetical protein K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32]
D EFER_1514 ydcS; putative spermidine/putrescine transporter subunit; periplasmic-binding component of ABC superfamily transporter K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D EFER_1517 ydcV; putative spermidine/putrescine transporter subunit; permease component of ABC superfamily K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D EFER_1516 ydcU; putative spermidine/putrescine transporter subunit; permease of ABC superfamily transporter K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D EFER_1515 ydcT; putative spermidine/putrescine transporter subunit; ATP-binding component of ABC superfamily tranporter K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D EFER_3431 livK; leucine transporter subunit; periplasmic-binding component of ABC superfamily K01999 livK; branched-chain amino acid transport system substrate-binding protein
D EFER_3433 livJ; leucine/isoleucine/valine transporter subunit; periplasmic-binding component of ABC superfamily K01999 livK; branched-chain amino acid transport system substrate-binding protein
D EFER_3430 livH; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01997 livH; branched-chain amino acid transport system permease protein
D EFER_3429 livM; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01998 livM; branched-chain amino acid transport system permease protein
D EFER_3428 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein
D EFER_3427 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein
D EFER_1936 rcsA; DNA-binding transcriptional activator, co-regulator with RcsB K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D EFER_1668 gmr; modulator of Rnase II stability K14051 gmr; c-di-GMP phosphodiesterase Gmr [EC:3.1.4.52]
D EFER_3481 siiEB; adhesin for cattle intestine colonization K20276 bapA; large repetitive protein
D EFER_1275 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D EFER_3330 crp; DNA-binding transcriptional dual regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D EFER_4137 zur; DNA-binding transcriptional repressor, Zn(II)-binding K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D EFER_1677 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D EFER_2611 ribD; fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D EFER_1450 ydcZ; conserved hypothetical protein; putative inner membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D EFER_1712 oppA; oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily K15580 oppA; oligopeptide transport system substrate-binding protein
D EFER_1647 mppA; murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit; periplasmic-binding component of ABC superfamily K15580 oppA; oligopeptide transport system substrate-binding protein
D EFER_1711 oppB; oligopeptide transporter subunit; membrane component of ABC superfamily K15581 oppB; oligopeptide transport system permease protein
D EFER_1710 oppC; oligopeptide transporter subunit; membrane component of ABC superfamily K15582 oppC; oligopeptide transport system permease protein
D EFER_1709 oppD; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K15583 oppD; oligopeptide transport system ATP-binding protein
D EFER_1708 oppF; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K10823 oppF; oligopeptide transport system ATP-binding protein
D EFER_1783 putative substrate-binding transport protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D EFER_1782 putative inner membrane nickel transport protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D EFER_1781 putative inner membrane transport protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D EFER_1780 putative ATPase component of ABC-type transport system K02031 ddpD; peptide/nickel transport system ATP-binding protein
D EFER_1779 putative ATPase component of ABC-type transport system K02032 ddpF; peptide/nickel transport system ATP-binding protein
D EFER_4002 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D EFER_3773 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D EFER_3152 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D EFER_3283 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D EFER_2618 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D EFER_0120 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D EFER_3437 ftsY; fused Signal Recognition Particle (SRP) receptor: membrane binding protein; conserved hypothetical protein K03110 ftsY; fused signal recognition particle receptor
D EFER_3603 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D EFER_0462 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli [PATH:efe02026]
D EFER_0755 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D EFER_3698 cyaA; adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D EFER_3330 crp; DNA-binding transcriptional dual regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D EFER_1129 flhD; DNA-binding transcriptional dual regulator with FlhC (modular protein) K02403 flhD; flagellar transcriptional activator FlhD
D EFER_1130 flhC; DNA-binding transcriptional dual regulator with FlhD K02402 flhC; flagellar transcriptional activator FlhC
D EFER_1858 flgM; Negative regulator of flagellin synthesis (Anti-sigma-28 factor) K02398 flgM; negative regulator of flagellin synthesis FlgM
D EFER_1171 fliA; RNA polymerase, sigma 28 (sigma F) factor K02405 fliA; RNA polymerase sigma factor FliA
D EFER_1173 fliZ; putative regulator of FliA activity K02425 fliZ; regulator of sigma S factor FliZ
D EFER_0168 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D EFER_0328 rpoS; RNA polymerase, sigma S (sigma 38) factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D EFER_2153 yegE; putative diguanylate cyclase, GGDEF domain signalling protein K21084 yegE; diguanylate cyclase [EC:2.7.7.65]
D EFER_1940 Putative diguanylate cyclase; GGDEF domain; putative PLP-dependent transferase K21085 yedQ; diguanylate cyclase [EC:2.7.7.65]
D EFER_3508 yhjH; EAL domain containing protein involved in flagellar function K21086 pdeH; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D EFER_1761 ycgR; putative regulator K21087 ycgR; flagellar brake protein
D EFER_1630 ydaM; conserved hypothetical protein; PAC/PAS and GGDEF domains K21088 ydaM; diguanylate cyclase [EC:2.7.7.65]
D EFER_1668 gmr; modulator of Rnase II stability K14051 gmr; c-di-GMP phosphodiesterase Gmr [EC:3.1.4.52]
D EFER_2213 mlrA; DNA-binding transcriptional regulator K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
D EFER_1889 csgD; DNA-binding transcriptional activator in two-component regulatory system K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D EFER_1888 csgB; curlin nucleator protein, minor subunit in curli complex K04335 csgB; minor curlin subunit
D EFER_1887 csgA; cryptic curlin major subunit K04334 csgA; major curlin subunit
D EFER_1886 csgC; putative curli production protein csgC precursor K04336 csgC; curli production protein
D EFER_2638 yaiC; putative diguanylate cyclase K18968 adrA; diguanylate cyclase [EC:2.7.7.65]
D EFER_1261 adrB; putative cyclic di-GMP phosphodiesterase K21090 adrB; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D EFER_3518 bcsA; cellulose synthase, catalytic subunit K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D EFER_1161 bcsA; cellulose synthase catalytic subunit [UDP-forming] K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D EFER_0382 luxS; S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D EFER_1565 lsrR; DNA-binding transcriptional regulator K11531 lsrR; lsr operon transcriptional repressor
D EFER_2146 wza; lipoprotein required for capsular polysaccharide translocation through the outer membrane K01991 wza; polysaccharide biosynthesis/export protein
D EFER_1178 sdiA; DNA-binding transcriptional activator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D EFER_0278 barA; hybrid sensory histidine kinase, in two-component regulatory system with UvrY K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D EFER_1180 uvrY; DNA-binding response regulator in two-component regulatory system with BarA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D EFER_misc_RNA_7 csrB; CsrB K18515 csrB; small regulatory RNA CsrB
D EFER_misc_RNA_60 csrC; CsrC K18516 csrC; small regulatory RNA CsrC
D EFER_0378 csrA; pleiotropic regulatory protein for carbon source metabolism K03563 csrA; carbon storage regulator
D EFER_3407 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D EFER_3406 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D EFER_3386 malP; maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D EFER_3405 glgP; glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D EFER_1904 pgaA; biofilm PGA synthesis protein PgaA precursor K11935 pgaA; biofilm PGA synthesis protein PgaA
D EFER_1905 pgaB; putative polysaccharide deacetylase associated with biofilm formation; putative lipoprotein K11931 pgaB; poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase [EC:3.5.1.-]
D EFER_1906 pgaC; putative glycosyl transferase associated with biofilm formation K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D EFER_1907 ycdP; Biofilm PGA synthesis protein pgaD K11937 pgaD; biofilm PGA synthesis protein PgaD
D EFER_3801 oxyR; DNA-binding transcriptional dual regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D EFER_misc_RNA_63 oxyS; OxyS K18528 oxyS; small regulatory RNA OxyS
D EFER_3187 arcB; hybrid sensory histidine kinase in two-component regulatory system with ArcA K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D EFER_4500 arcA; DNA-binding response regulator in two-component regulatory system with ArcB or CpxA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D EFER_misc_RNA_55 ryhA; RyhA K18504 arcZ; small regulatory RNA ArcZ
D EFER_misc_RNA_35 dsrA; DsrA K18502 dsrA; small regulatory RNA DsrA
D EFER_0942 rcsC; hybrid sensory kinase in two-component regulatory system with RcsB and YojN K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D EFER_0944 rcsD; phosphotransfer intermediate protein in two-component regulatory system with RcsBC K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D EFER_0943 rcsB; DNA-binding response regulator in two-component regulatory system with RcsC and YojN K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D EFER_1936 rcsA; DNA-binding transcriptional activator, co-regulator with RcsB K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D EFER_misc_RNA_27 rprA; RprA K18518 rprA; small regulatory RNA RprA
D EFER_0259 gcvA; DNA-binding transcriptional dual regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D EFER_0696 gcvR; DNA-binding transcriptional repressor, regulatory protein accessory to GcvA K03567 gcvR; glycine cleavage system transcriptional repressor
D EFER_misc_RNA_6 gcvB; GcvB K18521 gcvB; small regulatory RNA GcvB
D EFER_3372 envZ; sensory histidine kinase in two-component regulatory system with OmpR K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D EFER_3373 ompR; DNA-binding response regulator in two-component regulatory system with EnvZ K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D EFER_misc_RNA_45 omrA; OmrA K18522 omrA; small regulatory RNA OmrA
D EFER_misc_RNA_46 omrB; OmrB K18523 omrB; small regulatory RNA OmrB
D EFER_misc_RNA_31 isrA; IsrA K21091 mcaS; small regulatory RNA McaS
D EFER_misc_RNA_28 rydC; RydC K18509 rydC; small regulatory RNA RydC
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:efe02030]
D EFER_3055 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D EFER_1141 tar; methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D EFER_3024 aer; fused signal transducer for aerotaxis sensory component; methyl accepting chemotaxis component K03776 aer; aerotaxis receptor
D EFER_4126 malE; maltose transporter subunit; periplasmic-binding component of ABC superfamily K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D EFER_4050 rbsB; D-ribose transporter subunit; periplasmic-binding compoent of ABC superfamily K10439 rbsB; ribose transport system substrate-binding protein
D EFER_2235 mglB; methyl-galactoside transporter subunit; periplasmic-binding component of ABC superfamily K10540 mglB; methyl-galactoside transport system substrate-binding protein
D EFER_3541 dppA; dipeptide transporter; periplasmic-binding component of ABC superfamily K12368 dppA; dipeptide transport system substrate-binding protein
D EFER_1133 cheA; fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase; signal sensing protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D EFER_1134 cheW; purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D EFER_1144 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D EFER_1145 cheZ; chemotaxis regulator, protein phosphatase for CheY K03414 cheZ; chemotaxis protein CheZ
D EFER_1143 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D EFER_0899 putative chemotaxis protein (cheV-like) K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D EFER_1142 cheR; chemotaxis regulator, protein-glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D EFER_1924 fliG; flagellar motor switching and energizing component K02410 fliG; flagellar motor switch protein FliG
D EFER_1930 fliM; flagellar motor switching and energizing component K02416 fliM; flagellar motor switch protein FliM
D EFER_1931 fliN; flagellar motor switching and energizing component K02417 fliN; flagellar motor switch protein FliN
D EFER_1131 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA
D EFER_2750 mbhA; flagellar system protein K02557 motB; chemotaxis protein MotB
D EFER_1132 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:efe02040]
D EFER_1921 fliE; flagellar basal-body component K02408 fliE; flagellar hook-basal body complex protein FliE
D EFER_1923 fliF; flagellar basal-body MS-ring and collar protein K02409 fliF; flagellar M-ring protein FliF
D EFER_1924 fliG; flagellar motor switching and energizing component K02410 fliG; flagellar motor switch protein FliG
D EFER_1925 fliH; flagellar biosynthesis protein K02411 fliH; flagellar assembly protein FliH
D EFER_1926 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D EFER_1927 fliJ; flagellar protein K02413 fliJ; flagellar protein FliJ
D EFER_1928 fliK; Flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D EFER_1929 fliL; Flagellar fliL protein K02415 fliL; flagellar protein FliL
D EFER_1930 fliM; flagellar motor switching and energizing component K02416 fliM; flagellar motor switch protein FliM
D EFER_1931 fliN; flagellar motor switching and energizing component K02417 fliN; flagellar motor switch protein FliN
D EFER_1932 fliO; Flagellar protein fliO K02418 fliO; flagellar protein FliO/FliZ
D EFER_1933 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D EFER_1934 fliQ; flagellar biosynthesis protein K02420 fliQ; flagellar biosynthesis protein FliQ
D EFER_1935 fliR; flagellar export pore protein K02421 fliR; flagellar biosynthesis protein FliR
D EFER_1196 flhE; conserved hypothetical protein K03516 flhE; flagellar protein FlhE
D EFER_2751 fhiA; flagellar system protein K02400 flhA; flagellar biosynthesis protein FlhA
D EFER_1195 flhA; putative flagellar export pore protein K02400 flhA; flagellar biosynthesis protein FlhA
D EFER_1194 flhB; flagellar export pore protein K02401 flhB; flagellar biosynthesis protein FlhB
D EFER_1857 flgA; Flagella basal body P-ring formation protein flgA precursor K02386 flgA; flagellar basal body P-ring formation protein FlgA
D EFER_1856 flgB; flagellar component of cell-proximal portion of basal-body rod K02387 flgB; flagellar basal-body rod protein FlgB
D EFER_1855 flgC; flagellar component of cell-proximal portion of basal-body rod K02388 flgC; flagellar basal-body rod protein FlgC
D EFER_1854 flgD; flagellar hook assembly protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D EFER_1853 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D EFER_1852 flgF; flagellar component of cell-proximal portion of basal-body rod K02391 flgF; flagellar basal-body rod protein FlgF
D EFER_1850 flgG; flagellar component of cell-distal portion of basal-body rod K02392 flgG; flagellar basal-body rod protein FlgG
D EFER_1849 flgH; flagellar protein of basal-body outer-membrane L ring K02393 flgH; flagellar L-ring protein FlgH
D EFER_1848 flgI; flagellar basal body P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D EFER_1847 flgJ; muramidase K02395 flgJ; peptidoglycan hydrolase FlgJ
D EFER_1846 flgK; flagellar hook-filament junction protein 1 K02396 flgK; flagellar hook-associated protein 1
D EFER_1845 flgL; flagellar hook-filament junction protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D EFER_1170 fliC; Flagellin (Phase-1-C flagellin) K02406 fliC; flagellin
D EFER_1169 fliD; flagellar filament capping protein K02407 fliD; flagellar hook-associated protein 2
D EFER_1168 fliS; flagellar protein potentiates polymerization K02422 fliS; flagellar secretion chaperone FliS
D EFER_1167 fliT; putative chaperone for FliD K02423 fliT; flagellar protein FliT
D EFER_1131 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA
D EFER_2750 mbhA; flagellar system protein K02557 motB; chemotaxis protein MotB
D EFER_1132 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB
D EFER_1858 flgM; Negative regulator of flagellin synthesis (Anti-sigma-28 factor) K02398 flgM; negative regulator of flagellin synthesis FlgM
D EFER_1859 flgN; Flagella synthesis protein flgN K02399 flgN; flagellar biosynthesis protein FlgN
D EFER_1174 fliY; cystine transporter subunit; periplasmic-binding component of ABC superfamily K02424 tcyA; L-cystine transport system substrate-binding protein
D EFER_1173 fliZ; putative regulator of FliA activity K02425 fliZ; regulator of sigma S factor FliZ
D EFER_3008 rpoD; RNA polymerase, sigma 70 (sigma D) factor K03086 rpoD; RNA polymerase primary sigma factor
D EFER_1129 flhD; DNA-binding transcriptional dual regulator with FlhC (modular protein) K02403 flhD; flagellar transcriptional activator FlhD
D EFER_1130 flhC; DNA-binding transcriptional dual regulator with FlhD K02402 flhC; flagellar transcriptional activator FlhC
D EFER_3179 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D EFER_1171 fliA; RNA polymerase, sigma 28 (sigma F) factor K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D EFER_0285 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D EFER_4072 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:efe01501]
D EFER_1073 ompF; outer membrane porin 1a (Ia;b;F) K09476 ompF; outer membrane pore protein F
D EFER_1948 Outer membrane protein N precursor (porin) K09476 ompF; outer membrane pore protein F
D EFER_0945 ompC; outer membrane porin protein C K09475 ompC; outer membrane pore protein C
D EFER_2584 ampG; muropeptide transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D EFER_1821 nagZ; beta N-acetyl-glucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D EFER_4204 ampC; beta-lactamase/D-alanine carboxypeptidase K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D EFER_1712 oppA; oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily K15580 oppA; oligopeptide transport system substrate-binding protein
D EFER_1647 mppA; murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit; periplasmic-binding component of ABC superfamily K15580 oppA; oligopeptide transport system substrate-binding protein
D EFER_1711 oppB; oligopeptide transporter subunit; membrane component of ABC superfamily K15581 oppB; oligopeptide transport system permease protein
D EFER_1710 oppC; oligopeptide transporter subunit; membrane component of ABC superfamily K15582 oppC; oligopeptide transport system permease protein
D EFER_1709 oppD; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K15583 oppD; oligopeptide transport system ATP-binding protein
D EFER_1708 oppF; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K10823 oppF; oligopeptide transport system ATP-binding protein
D EFER_2745 conserved hypothetical protein K18148 rtcB; release factor H-coupled RctB family protein
D EFER_2554 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D EFER_2555 acrB; multidrug efflux system protein K18138 acrB; multidrug efflux pump
D EFER_2976 tolC; transport channel K12340 tolC; outer membrane protein
D EFER_3362 mrcA; fused penicillin-binding protein 1a: murein transglycosylase; murein transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D EFER_2470 mrdA; transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D EFER_0106 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D EFER_p0036 bla; Beta-lactamase TEM precursor (Penicillinase) K18698 blaTEM; beta-lactamase class A TEM [EC:3.5.2.6]
D EFER_1643 bla; Beta-lactamase TEM precursor (penicillinase) K18698 blaTEM; beta-lactamase class A TEM [EC:3.5.2.6]
C 01502 Vancomycin resistance [PATH:efe01502]
D EFER_0114 ddlB; D-alanine:D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D EFER_2642 ddlA; D-alanine-D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D EFER_1765 dadX; alanine racemase 2, PLP-binding K01775 alr; alanine racemase [EC:5.1.1.1]
D EFER_4143 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D EFER_3824 Alanine racemase 3 K01775 alr; alanine racemase [EC:5.1.1.1]
D EFER_0108 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D EFER_0109 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D EFER_0112 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:efe01503]
D EFER_1801 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D EFER_1800 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D EFER_3543 yhjW; inner membrane protein YhjW K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D EFER_2481 CrcA protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D EFER_0916 yfbE; uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D EFER_0915 yfbF; undecaprenyl phosphate-L-Ara4FN transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D EFER_0914 yfbG; fused UDP-L-Ara4N formyltransferase; UDP-GlcA C-4'-decarboxylase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D EFER_0913 yfbH; conserved hypothetical protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D EFER_0912 arnT; 4-amino-4-deoxy-L-arabinose transferase K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D EFER_0911 yfbW; conserved hypothetical protein; inner membrane protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D EFER_0910 conserved hypothetical protein K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF
D EFER_0909 pmrD; polymyxin resistance protein B K19238 pmrD; signal transduction protein PmrD
D EFER_4171 basS; sensory histidine kinase in two-component regulatory system with BasR K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D EFER_4172 basR; DNA-binding response regulator in two-component regulatory system with BasS K07771 basR; two-component system, OmpR family, response regulator BasR
D EFER_4173 eptA; putative metal dependent hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D EFER_1660 sapA; antimicrobial peptide transporter subunit; periplasmic-binding component of ABC superfamily transporter K19226 sapA; cationic peptide transport system substrate-binding protein
D EFER_1661 sapB; antimicrobial peptide transporter subunit; permease component of ABC superfamily transporter K19227 sapB; cationic peptide transport system permease protein
D EFER_1662 sapC; antimicrobial peptide transporter subunit; permease component of ABC superfamily transporter K19228 sapC; cationic peptide transport system permease protein
D EFER_1663 sapD; antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily transporter K19229 sapD; cationic peptide transport system ATP-binding protein
D EFER_1664 sapF; antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily transporter K19230 sapF; cationic peptide transport system ATP-binding protein
D EFER_0216 nlpE; lipoprotein involved with copper homeostasis and adhesion K06079 cutF; copper homeostasis protein (lipoprotein)
D EFER_3861 cpxA; sensory histidine kinase in two-component regulatory system with CpxR K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D EFER_3860 cpxR; DNA-binding response regulator in two-component regulatory system with CpxA K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D EFER_0737 amiA; N-acetylmuramoyl-l-alanine amidase I K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D EFER_4222 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D EFER_0253 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D EFER_1277 ycfS; conserved hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS
D EFER_0184 degP; serine endoprotease (protease Do), membrane-associated K04771 degP; serine protease Do [EC:3.4.21.107]
D EFER_3616 dsbA; periplasmic protein disulfide isomerase I K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D EFER_3336 ppiA; peptidyl-prolyl cis-trans isomerase A (rotamase A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D EFER_1544 marA; DNA-binding transcriptional dual activator of multiple antibiotic resistance K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator
D EFER_2554 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D EFER_2555 acrB; multidrug efflux system protein K18138 acrB; multidrug efflux pump
D EFER_2976 tolC; transport channel K12340 tolC; outer membrane protein
D EFER_0204 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:efe01000]
C 01001 Protein kinases [BR:efe01001]
D EFER_3094 putative protein kinase from phage origin K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D EFER_2144 wzc; protein-tyrosine kinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D EFER_2626 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D EFER_1801 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D EFER_3372 envZ; sensory histidine kinase in two-component regulatory system with OmpR K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D EFER_1428 rstB; sensory histidine kinase in two-component regulatory system with RstA K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D EFER_3861 cpxA; sensory histidine kinase in two-component regulatory system with CpxR K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D EFER_4498 creC; sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulon K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D EFER_2165 baeS; sensory histidine kinase in two-component regulatory system with BaeR K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D EFER_4171 basS; sensory histidine kinase in two-component regulatory system with BasR K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D EFER_2541 cusS; sensory histidine kinase in two-component regulatory system with CusR, senses copper ions K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D EFER_2968 qseC; Sensor protein qseC sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D EFER_2415 kdpD; fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein; sensory histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D EFER_1188 torS; hybrid sensory histidine kinase in two-component regulatory system with TorR K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D EFER_3187 arcB; hybrid sensory histidine kinase in two-component regulatory system with ArcA K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D EFER_1738 narX; sensory histidine kinase in two-component regulatory system with NarL K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D EFER_0709 narQ; sensory histidine kinase in two-component regulatory system with NarP (NarL) K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D EFER_3965 uhpB; sensory histidine kinase in two-component regulatory sytem with UhpA K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D EFER_0944 rcsD; phosphotransfer intermediate protein in two-component regulatory system with RcsBC K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D EFER_0942 rcsC; hybrid sensory kinase in two-component regulatory system with RcsB and YojN K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D EFER_0278 barA; hybrid sensory histidine kinase, in two-component regulatory system with UvrY K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D EFER_0027 citA; sensory histidine kinase in two-component regulatory system with citB K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D EFER_4179 dcuS; sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3]
D EFER_0788 ypdA; putative sensory kinase in two-component system with YpdB K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D EFER_2212 yehU; sensory kinase in two-component system with YehT K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D EFER_3904 glnL; sensory histidine kinase in two-component regulatory system with GlnG K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D EFER_3751 zraS; sensory histidine kinase in two-component regulatory system with ZraR K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D EFER_0941 atoS; sensory histidine kinase in two-component regulatory system with AtoC K07710 atoS; two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3]
D EFER_0519 yfhK; putative sensory kinase in two-component system K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D EFER_4156 putative C4-dicarboxylate transport sensor protein (dctB-like) K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D EFER_1133 cheA; fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase; signal sensing protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:efe01009]
D EFER_3857 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D EFER_2544 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D EFER_3880 htpG; Hsp90xo molecular chaperone K04079 HSP90A; molecular chaperone HtpG
D EFER_4485 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:efe01002]
D EFER_0020 lspA; prolipoprotein signal peptidase (signal peptidase II) K03101 lspA; signal peptidase II [EC:3.4.23.36]
D EFER_2912 pppA; bifunctional prepilin leader peptidase and methylase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D EFER_3306 putative bifunctional prepilin peptidase HopD: leader peptidase; methyl transferase (General Secretory Pathway) K02506 hofD; leader peptidase HopD [EC:3.4.23.43]
D EFER_1113 hyaD; protein involved in processing of HyaA and HyaB proteins K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D EFER_2936 hybD; maturation element for hydrogenase 2 K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D EFER_0360 hycI; protease involved in processing C-terminal end of HycE K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51]
D EFER_2401 Pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D EFER_0668 guaA; GMP synthetase (glutamine aminotransferase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D EFER_2265 spr; putative peptidase, outer membrane lipoprotein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D EFER_1389 conserved hypothetical protein; putative exported protein, putative NlpC/P60 family protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D EFER_1356 nlpC; putative peptidase lipoprotein K13695 nlpC; probable lipoprotein NlpC
D EFER_0851 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D EFER_3189 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D EFER_4027 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D EFER_2435 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D EFER_1951 hchA; Hsp31 molecular chaperone K05523 hchA; D-lactate dehydratase / protein deglycase [EC:4.2.1.130 3.5.1.124]
D EFER_3116 yhbO; putative intracellular protease K05520 yhbO; deglycase [EC:3.5.1.124]
D EFER_2601 yajL; conserved hypothetical protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D EFER_2002 erfK; conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain K16291 erfK; L,D-transpeptidase ErfK/SrfK
D EFER_1374 ynhG; conserved hypothetical protein K19234 ynhG; L,D-transpeptidase YnhG
D EFER_0962 ybiS; conserved hypothetical protein K19235 ybiS; L,D-transpeptidase YbiS
D EFER_1277 ycfS; conserved hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS
D EFER_1069 ycbB; putative exported enzyme K21470 ycbB; L,D-transpeptidase YcbB
D EFER_1076 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D EFER_3491 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D EFER_1537 dcp; dipeptidyl carboxypeptidase II K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D EFER_2754 ptr; protease III K01407 ptrA; protease III [EC:3.4.24.55]
D EFER_1574 pqqL; putative zinc protease K07263 pqqL; zinc protease [EC:3.4.24.-]
D EFER_4342 pepA; aminopeptidase A, a cyteinylglycinase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D EFER_0649 pepB; aminopeptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D EFER_0706 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D EFER_1291 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D EFER_2741 pepD; aminoacyl-histidine dipeptidase (peptidase D) K01270 pepD; dipeptidase D [EC:3.4.13.-]
D EFER_3799 Hippurate hydrolase (Benzoylglycine amidohydrolase) (hippuricase) K01451 hipO; hippurate hydrolase [EC:3.5.1.32]
D EFER_1216 yebA; putative metallopeptidase K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D EFER_0190 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D EFER_3634 pepQ; proline dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D EFER_2845 pepP; proline aminopeptidase P II K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D EFER_0783 ypdF; Xaa-Pro and Met-Xaa peptidase K08326 ypdF; aminopeptidase [EC:3.4.11.-]
D EFER_0313 iap; aminopeptidase in alkaline phosphatase isozyme conversion K09612 iap; alkaline phosphatase isozyme conversion protein [EC:3.4.11.-]
D EFER_3155 ftsH; protease, ATP-dependent zinc-metallo K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D EFER_3874 frvX; putative endo-1,4-beta-glucanase K18530 frvX; putative aminopeptidase FrvX [EC:3.4.11.-]
D EFER_1245 htpX; membrane-associated Zn-dependent endopeptidase; self-cleaved K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D EFER_2869 yggG; putative peptidase K07387 K07387; metalloprotease [EC:3.4.24.-]
D EFER_0682 yfgC; putative peptidase K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D EFER_0198 yaeL; zinc metallopeptidase K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D EFER_0835 mepA; murein DD-endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D EFER_1953 yeeI; conserved hypothetical protein K09933 mtfA; MtfA peptidase
D EFER_1437 ydgD; putative exported metallopeptidase K04775 ydgD; protease YdgD [EC:3.4.21.-]
D EFER_0184 degP; serine endoprotease (protease Do), membrane-associated K04771 degP; serine protease Do [EC:3.4.21.107]
D EFER_3205 degQ; serine endoprotease, periplasmic K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D EFER_3206 degS; serine endoprotease, periplasmic K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D EFER_1228 ptrB; protease II K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D EFER_2473 dacA; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D EFER_0980 dacC; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D EFER_2221 pbpG; D-alanyl-D-alanine endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D EFER_2647 ampH; beta-lactamase/D-alanine carboxypeptidase K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D EFER_0742 murQ; D-lactyl ether N-acetylmuramic-6-phosphate acid etherase; beta-lactamase family K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
D EFER_3159 dacB; D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D EFER_2580 clpP; proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D EFER_2578 lon; DNA-binding ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D EFER_p0027 putative ATP-dependent Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D EFER_1092 ycbZ; putative ATP-dependent protease K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D EFER_4134 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88]
D EFER_0590 putative LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D EFER_4430 conserved hypothetical protein from phage origin with LexA DNA binding domain K01356 lexA; repressor LexA [EC:3.4.21.88]
D EFER_1920 umuD; DNA polymerase V, subunit D K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D EFER_p0007 Protein impA [Contains: Protein impA'] (modular protein) K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D EFER_0506 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D EFER_1244 prc; carboxy-terminal protease for penicillin-binding protein 3 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D EFER_1299 sppA; protease IV (signal peptide peptidase) K04773 sppA; protease IV [EC:3.4.21.-]
D EFER_1685 sohB; putative inner membrane peptidase K04774 sohB; serine protease SohB [EC:3.4.21.-]
D EFER_3392 glpG; putative intramembrane serine protease K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D EFER_1763 ldcA; L,D-carboxypeptidase A K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D EFER_0605 putative phage pro-head protease K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D EFER_3840 hslV; peptidase component of the HslUV protease K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D EFER_3419 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D EFER_2171 yegQ; putative peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D EFER_1510 ydcP; putative peptidase K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase
D EFER_3122 yhbV; protease K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D EFER_3121 yhbU; peptidase (collagenase-like) K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D EFER_4313 pmbA; peptidase required for the maturation and secretion of the antibiotic peptide MccB17 K03592 pmbA; PmbA protein
D EFER_3222 tldD; putative peptidase K03568 tldD; TldD protein
D EFER_2299 eco; ecotin, a serine protease inhibitor K08276 eco; ecotin
D EFER_0652 yfhM; conserved hypothetical protein K06894 yfhM; alpha-2-macroglobulin
D EFER_4228 hflC; modulator for HflB protease specific for phage lambda cII repressor K04087 hflC; modulator of FtsH protease HflC
D EFER_4227 hflK; modulator for HflB protease specific for phage lambda cII repressor K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:efe01003]
D EFER_3406 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D EFER_3518 bcsA; cellulose synthase, catalytic subunit K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D EFER_1161 bcsA; cellulose synthase catalytic subunit [UDP-forming] K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D EFER_3185 mtgA; biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D EFER_0653 pbpC; fused transglycosylase; transpeptidase K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D EFER_0172 mrcB; fused glycosyl transferase; transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D EFER_3362 mrcA; fused penicillin-binding protein 1a: murein transglycosylase; murein transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D EFER_2139 wcaE; putative glycosyl transferase K13683 wcaE; putative colanic acid biosynthesis glycosyltransferase WcaE [EC:2.4.-.-]
D EFER_2141 wcaC; putative glycosyl transferase K13684 wcaC; putative colanic acid biosynthesis glycosyltransferase WcaC [EC:2.4.-.-]
D EFER_3709 rffM; UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D EFER_3711 rffT; TDP-Fuc4NAc:lipidIIFuc4NAc transferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D EFER_3720 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D EFER_1878 mdoH; glucan biosynthesis: glycosyl transferase K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D EFER_1906 pgaC; putative glycosyl transferase associated with biofilm formation K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D EFER_1127 otsA; trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D EFER_2128 wcaL; putative glycosyl transferase K16703 wcaL; colanic acid/amylovoran/stewartan biosynthesis glycosyltransferase WcaL/AmsK/CpsK [EC:2.4.-.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:efe01005]
D EFER_0204 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D EFER_0205 lpxB; tetraacyldisaccharide-1-P synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D EFER_0118 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D EFER_0202 lpxD; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D EFER_0566 lpxH; UDP-2,3-diacylglucosamine pyrophosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D EFER_1059 lpxK; lipid A 4'kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D EFER_1874 lpxL; lauryl-acyl carrier protein (ACP)-dependent acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D EFER_1217 lpxM; myristoyl-acyl carrier protein (ACP)-dependent acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D EFER_1914 msbB; Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D EFER_0790 ddg; palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D EFER_2263 yeiU; undecaprenyl pyrophosphate phosphatase K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D EFER_3924 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D EFER_0912 arnT; 4-amino-4-deoxy-L-arabinose transferase K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D EFER_2481 CrcA protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D EFER_4173 eptA; putative metal dependent hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D EFER_3543 yhjW; inner membrane protein YhjW K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D EFER_1746 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D EFER_1062 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D EFER_3175 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D EFER_3174 kdsD; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D EFER_3910 waaC; ADP-heptose:LPS heptosyl transferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D EFER_4086 lipopolysaccharide 1,2-N-acetylglucosaminetransferase K00713 waaD; UDP-glucose:(glucosyl)LPS alpha-1,2-glucosyltransferase [EC:2.4.1.-]
D EFER_3909 waaF; ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D EFER_3922 waaG; glucosyltransferase I K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D EFER_3609 yibD; putative glycosyl transferase K19354 waaH; heptose III glucuronosyltransferase [EC:2.4.1.-]
D EFER_3920 UDP-glucose:glucosyl LPS a 1,2-glucosyltransferase K24623 waaH; UDP-glucose:(glucosyl)LPS alpha-1,2-glucosyltransferase [EC:2.4.1.-]
D EFER_3912 rfaK; Lipopolysaccharide 1,2-N-acetylglucosaminetransferase K03280 waaK; UDP-N-acetylglucosamine:(glucosyl)LPS alpha-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.56]
D EFER_3911 rfaL; O-antigen ligase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D EFER_3916 waaI; UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1,3-D-galactosyltransferase K03275 waaO; UDP-glucose:(glucosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D EFER_3921 waaP; kinase that phosphorylates core heptose of lipopolysaccharide K02848 waaP; lipopolysaccharide core heptose(I) kinase [EC:2.7.1.235]
D EFER_3923 waaQ; lipopolysaccharide core biosynthesis protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D EFER_3915 waaJ; UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase K03276 waaR; UDP-glucose/galactose:(glucosyl)LPS alpha-1,2-glucosyl/galactosyltransferase [EC:2.4.1.-]
D EFER_3914 waaY; lipopolysaccharide core biosynthesis protein K02850 waaY; heptose II phosphotransferase [EC:2.7.1.-]
D EFER_3913 waaZ; lipopolysaccharide core biosynthesis protein K12981 waaZ; KDO transferase III [EC:2.4.99.-]
D EFER_1916 Putative Glycosyltransferase similar to rbfU encoded by Plasmid virulence plasmid pWR501; Plasmid pCP301; Plasmid pSF5 K23160 wabB; GlcNAc transferase
D EFER_3808 yijP; conserved hypothetical protein; putative inner membrane protein K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-]
D EFER_0248 lpcA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D EFER_0224 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D EFER_2996 rfaE; fused heptose 7-phosphate kinase; heptose 1-phosphate adenyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D EFER_3908 waaD; ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D EFER_3710 wzyE; putative Wzy protein involved in ECA polysaccharide chain elongation K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27]
D EFER_2110 Chain length determinant protein (Polysaccharide antigen chain regulator) K05789 wzzB; chain length determinant protein (polysaccharide antigen chain regulator)
D EFER_0628 yfdH; bactoprenol glucosyl transferase; CPS-53 (KpLE1) prophage K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D EFER_3720 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:efe01011]
D EFER_3166 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D EFER_3779 murB; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D EFER_0113 murC; UDP-N-acetylmuramate:L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D EFER_0110 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D EFER_0107 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D EFER_0114 ddlB; D-alanine:D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D EFER_2642 ddlA; D-alanine-D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D EFER_1765 dadX; alanine racemase 2, PLP-binding K01775 alr; alanine racemase [EC:5.1.1.1]
D EFER_4143 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D EFER_3824 Alanine racemase 3 K01775 alr; alanine racemase [EC:5.1.1.1]
D EFER_3792 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D EFER_1763 ldcA; L,D-carboxypeptidase A K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D EFER_0109 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D EFER_0112 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D EFER_3002 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D EFER_0982 ybjG; undecaprenyl pyrophosphate phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D EFER_1860 mviN; conserved hypothetical protein; putative inner membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D EFER_3362 mrcA; fused penicillin-binding protein 1a: murein transglycosylase; murein transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D EFER_0172 mrcB; fused glycosyl transferase; transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D EFER_0653 pbpC; fused transglycosylase; transpeptidase K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D EFER_2470 mrdA; transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D EFER_0106 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D EFER_2473 dacA; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D EFER_0980 dacC; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D EFER_3159 dacB; D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D EFER_2647 ampH; beta-lactamase/D-alanine carboxypeptidase K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D EFER_0742 murQ; D-lactyl ether N-acetylmuramic-6-phosphate acid etherase; beta-lactamase family K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
D EFER_2221 pbpG; D-alanyl-D-alanine endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D EFER_3185 mtgA; biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D EFER_2002 erfK; conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain K16291 erfK; L,D-transpeptidase ErfK/SrfK
D EFER_1374 ynhG; conserved hypothetical protein K19234 ynhG; L,D-transpeptidase YnhG
D EFER_0962 ybiS; conserved hypothetical protein K19235 ybiS; L,D-transpeptidase YbiS
D EFER_1277 ycfS; conserved hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS
D EFER_1069 ycbB; putative exported enzyme K21470 ycbB; L,D-transpeptidase YcbB
D EFER_0835 mepA; murein DD-endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D EFER_1389 conserved hypothetical protein; putative exported protein, putative NlpC/P60 family protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D EFER_2265 spr; putative peptidase, outer membrane lipoprotein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D EFER_1216 yebA; putative metallopeptidase K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D EFER_4491 slt; lytic murein transglycosylase, soluble K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D EFER_0254 mltA; membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D EFER_0372 mltB; membrane-bound lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D EFER_2905 mltC; membrane-bound lytic murein transglycosylase C K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D EFER_0240 mltD; membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D EFER_1762 emtA; lytic murein endotransglycosylase E K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29]
D EFER_0517 yfhD; putative transglycosylase K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D EFER_1830 yceG; putative conserved membrane associated protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D EFER_2472 rlpA; minor lipoprotein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D EFER_0737 amiA; N-acetylmuramoyl-l-alanine amidase I K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D EFER_4222 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D EFER_0253 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D EFER_1010 ybjR; putative cell wall amidase and lipoprotein K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D EFER_0130 ampD; N-acetyl-anhydromuranmyl-L-alanine amidase K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
D EFER_1375 lpp; murein lipoprotein K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:efe01004]
D EFER_1835 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D EFER_1836 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D EFER_1732 putative 3-oxoacyl-[acyl-carrier-protein] synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D EFER_3463 putative 3-oxoacyl-[acyl-carrier-protein] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D EFER_0840 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D EFER_1832 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D EFER_3466 putative beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D EFER_1834 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D EFER_3465 putative 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D EFER_0800 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D EFER_1091 fabA; beta-hydroxydecanoyl thioester dehydrase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D EFER_0203 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D EFER_1665 fabI; enoyl-[acyl-carrier-protein] reductase, NADH-dependent K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D EFER_0552 tesA; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D EFER_2565 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D EFER_1701 yciA; putative hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D EFER_2574 ybaW; conserved hypothetical protein K12500 tesC; thioesterase III [EC:3.1.2.-]
D EFER_1726 putative Linoleoyl-CoA desaturase K00508 E1.14.19.3; linoleoyl-CoA desaturase [EC:1.14.19.3]
D EFER_4296 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D EFER_2657 prpE; propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D EFER_1275 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D EFER_4132 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D EFER_1837 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D EFER_3004 plsY; 1-acyl glycerol-3-phosphate synthetase component K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D EFER_2964 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:efe01008]
D EFER_2499 entB; isochorismatase K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14]
D EFER_2513 4'-phosphopantetheinyl transferase entD K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D EFER_2500 entE; 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71]
D EFER_2508 entF; enterobactin synthase multienzyme complex component, ATP-dependent K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72]
D EFER_2497 ybdB; putative esterase K24147 entH; proofreading thioesterase EntH
C 01006 Prenyltransferases [BR:efe01006]
D EFER_2604 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D EFER_3164 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D EFER_0196 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D EFER_4224 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D EFER_3842 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D EFER_4131 ubiA; p-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D EFER_2589 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:efe01007]
D EFER_0770 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D EFER_2429 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D EFER_0167 yadB; glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D EFER_1406 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D EFER_3350 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D EFER_0568 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D EFER_1197 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D EFER_2199 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D EFER_0018 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D EFER_4339 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D EFER_2464 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D EFER_1898 lysU; lysine tRNA synthetase, inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D EFER_2825 lysS; lysine tRNA synthetase, constitutive K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D EFER_1206 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D EFER_1074 asnS; asparaginyl tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D EFER_0658 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D EFER_3561 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D EFER_3560 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D EFER_1042 serS; seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D EFER_0218 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D EFER_1347 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D EFER_0377 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D EFER_1351 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D EFER_1352 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D EFER_1072 aspC; aspartate aminotransferase, PLP-dependent K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D EFER_3570 avtA; valine-pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D EFER_0879 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D EFER_0789 yfdZ; putative aminotransferase, PLP-dependent K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D EFER_4146 tyrB; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D EFER_2493 ybdL; methionine aminotransferase, PLP-dependent K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D EFER_2104 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D EFER_3907 kbl; 2-amino-3-ketobutyrate coenzyme A ligase (AKB ligase) (Glycine acetyltransferase) K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D EFER_2337 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D EFER_1421 malY; C-S lyase; antagonist of MalT transcriptional activator of maltose regulon in E. coli K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D EFER_3332 argD; bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D EFER_1317 astC; succinylornithine transaminase, PLP-dependent K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D EFER_0410 gabT; 4-aminobutyrate aminotransferase, PLP-dependent K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D EFER_3025 ygjG; putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent K09251 patA; putrescine aminotransferase [EC:2.6.1.82]
D EFER_2339 bioA; 7,8-diaminopelargonic acid synthase, PLP-dependent K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D EFER_0177 hemL; glutamate-1-semialdehyde aminotransferase (aminomutase) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D EFER_3732 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D EFER_1052 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D EFER_0916 yfbE; uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D EFER_3713 rffA; TDP-4-oxo-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:efe00194]
D EFER_4030 atpC; F1 sector of membrane-bound ATP synthase, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D EFER_4031 atpD; F1 sector of membrane-bound ATP synthase, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D EFER_4032 atpG; F1 sector of membrane-bound ATP synthase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D EFER_4033 atpA; F1 sector of membrane-bound ATP synthase, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D EFER_4034 atpH; F1 sector of membrane-bound ATP synthase, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D EFER_4035 atpF; F0 sector of membrane-bound ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D EFER_4036 atpE; F0 sector of membrane-bound ATP synthase, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D EFER_4037 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D EFER_4038 atpI; ATP synthase, membrane-bound accesory subunit K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:efe03000]
D EFER_4070 DNA modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D EFER_0073 araC; DNA-binding transcriptional dual regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D EFER_3069 hpaA; Regulator of the 4HPA-hydroxylase operon K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D EFER_3865 rhaR; DNA-binding transcriptional activator, L-rhamnose-binding K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D EFER_3866 rhaS; HTH-type transcriptional activator RhaS (L-rhamnose operon regulatory protein rhaS) K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D EFER_1332 chbR; DNA-binding transcriptional dual regulator K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D EFER_4174 adiY; DNA-binding transcriptional activator K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA
D EFER_0733 yfeG; putative DNA-binding transcriptional regulator K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D EFER_2931 envY; envelope protein; thermoregulation of porin biosynthesis K11920 envY; AraC family transcriptional regulator
D EFER_4163 soxS; DNA-binding transcriptional dual regulator K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D EFER_1544 marA; DNA-binding transcriptional dual activator of multiple antibiotic resistance K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator
D EFER_4495 rob; DNA-binding transcriptional activator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D EFER_1613 feaR; DNA-binding transcriptional dual regulator K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D EFER_4404 putative transcriptional regulatory protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D EFER_p0038 tetD; TetD, putative operon control protein K19056 tetD; AraC family transcriptional regulator, transposon Tn10 TetD protein
D EFER_3041 gadW; gadW HTH-type(AraC-type) transcriptional positive regulator of gadA and gadBC, in absence of gadX; repressor of gadX K21906 gadW; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator
D EFER_2703 putative araC-type regulatory protein from bacteriophage origin K21906 gadW; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator
D EFER_3042 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (gadA, gad BC) (AraC/XylS family) (modular protein) K21905 gadX; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator
D EFER_2006 pocR; Propanediol utilization: transcriptional regulation K27259 pocR; AraC family transcriptional regulator, pdu and cob operon regulator
D EFER_0947 ada; fused DNA-binding transcriptional dual regulator; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D EFER_0259 gcvA; DNA-binding transcriptional dual regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D EFER_3729 ilvY; DNA-binding transcriptional dual regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D EFER_3672 metR; DNA-binding transcriptional activator, homocysteine-binding K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D EFER_0014 nhaR; DNA-binding transcriptional activator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D EFER_3801 oxyR; DNA-binding transcriptional dual regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D EFER_2853 argP; DNA-binding transcriptional activator, replication initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D EFER_0097 leuO; DNA-binding transcriptional activator K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D EFER_1682 cysB; DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D EFER_1954 cbl; DNA-binding transcriptional activator of cysteine biosynthesis K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D EFER_3971 dsdC; DNA-binding transcriptional dual regulator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D EFER_3138 Malonate utilization transacting regulator MdcR K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator
D EFER_1955 nac; Nitrogen assimilation regulatory protein nac (Nitrogen assimilation control protein) K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D EFER_3221 aaeR; DNA-binding transcriptional regulator, efflux system K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D EFER_3738 hdfR; DNA-binding transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D EFER_0981 deoR; DNA-binding transcriptional repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D EFER_3391 glpR; DNA-binding transcriptional repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D EFER_4362 agaR; DNA-binding transcriptional dual regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D EFER_4244 ulaR; DNA-binding transcriptional dual regulator K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D EFER_2236 galS; DNA-binding transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D EFER_2772 galR; DNA-binding transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D EFER_3567 xylR; DNA-binding transcriptional activator, xylose-binding K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D EFER_4052 rbsR; DNA-binding transcriptional repressor of ribose metabolism K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D EFER_3550 putative transcriptional regulator, LacI family K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D EFER_3838 cytR; DNA-binding transcriptional dual regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D EFER_0102 fruR; DNA-binding transcriptional dual regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D EFER_2178 putative catabolite repressor protein K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D EFER_4323 treR; DNA-binding transcriptional repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D EFER_0363 ascG; DNA-binding transcriptional repressor K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D EFER_1386 purR; DNA-binding transcriptional repressor, hypoxanthine-binding K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D EFER_3414 gntR; DNA-binding transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D EFER_1474 putative lacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D EFER_3979 yidP; putative transcriptional regulator K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D EFER_2374 mngR; DNA-binding transcriptional dual regulator, fatty-acyl-binding K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor
D EFER_1768 fadR; DNA-binding transcriptional dual regulator of fatty acid metabolism K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D EFER_0133 pdhR; DNA-binding transcriptional dual regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D EFER_3028 uxuR; DNA-binding transcriptional repressor K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D EFER_2956 putative regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D EFER_2665 putative gntR family regulatory protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D EFER_4381 exuR; DNA-binding transcriptional repressor K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D EFER_3598 lldR; DNA-binding transcriptional repressor K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator
D EFER_3990 dgoR; putative DNA-binding transcriptional regulator K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D EFER_3197 nanR; DNA-binding transcriptional dual regulator K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor
D EFER_0399 putative fused protein: aminotransaminase/transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D EFER_3823 putative GntR-family regulatory protein, with an aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D EFER_1453 yncC; putative DNA-binding transcriptional regulator K13654 mcbR; GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator
D EFER_0408 csiR; DNA-binding transcriptional dual regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D EFER_1535 ydfH; putative DNA-binding transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
D EFER_p0041 Tetracycline repressor protein class B from transposon Tn10 K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D EFER_p0039 tetC; TetC, putative Transcriptional regulator K19047 tetC; TetR/AcrR family transcriptional regulator, repressor of tetCD
D EFER_2553 acrR; DNA-binding transcriptional repressor K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D EFER_3932 ttk; division inhibitor K05501 slmA; TetR/AcrR family transcriptional regulator
D EFER_1158 rutR; DNA-binding transcriptional regulator of the alternative pyrimidine degradation pathway K09017 rutR; TetR/AcrR family transcriptional regulator
D EFER_1395 ydhM; putative DNA-binding transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D EFER_3243 putative acrEF/envCD operon repressor K18140 envR; TetR/AcrR family transcriptional regulator, acrEF/envCD operon repressor
D EFER_3797 fabR; DNA-binding transcriptional repressor K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D EFER_4265 ytfA; putative transcriptional regulator K22294 nicS; TetR/AcrR family transcriptional regulator, upper aerobic nicotinate degradation pathway regulator
D EFER_2312 ybiH; putative DNA-binding transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D EFER_0987 ybjK; putative DNA-binding transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
D EFER_4042 asnC; DNA-binding transcriptional dual regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D EFER_1038 lrp; DNA-binding transcriptional dual regulator, leucine-binding K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D EFER_2570 ybaO; putative DNA-binding transcriptional regulator with homology to Lrp K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D EFER_1178 sdiA; DNA-binding transcriptional activator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D EFER_1936 rcsA; DNA-binding transcriptional activator, co-regulator with RcsB K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D EFER_1889 csgD; DNA-binding transcriptional activator in two-component regulatory system K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D EFER_3032 dctR; Putative HTH-type transcriptional regulator dctR, Probable repressor of dctA dicarboxylate transporter gene K21901 dctR; LuxR family transcriptional regulator, dicarboxylate transport regulator
D EFER_4406 putative 2-component transcriptional regulator BglJ K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D EFER_3387 malT; fused conserved hypothetical protein; DNA-binding transcriptional activator, maltotriose-ATP-binding K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D EFER_3037 gadE; Transcriptional regulator gadE K21907 gadE; LuxR family transcriptional regulator, glutamate-dependent acid resistance regulator
D EFER_1545 marR; DNA-binding transcriptional repressor of multiple antibiotic resistance K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR
D EFER_1401 slyA; DNA-binding transcriptional activator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D EFER_0387 mprA; DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D EFER_0329 Transcriptional regulator hosA K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D EFER_0793 putative transcriptional repressor of for multidrug resistance pump (MarR family) K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D EFER_0545 cueR; DNA-binding transcriptional activator of copper-responsive regulon genes K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D EFER_3276 zntR; DNA-binding transcriptional activator in response to Zn(II) K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D EFER_4164 soxR; DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D EFER_2213 mlrA; DNA-binding transcriptional regulator K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
D EFER_2426 fur; DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D EFER_4137 zur; DNA-binding transcriptional repressor, Zn(II)-binding K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D EFER_4071 iclR; DNA-binding transcriptional repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D EFER_1637 PcaR; Pca regulon regulatory protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D EFER_2591 Regulatory proteins, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D EFER_1478 putative transcriptional regulator protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D EFER_1247 kdgR; DNA-binding transcriptional repressor KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D EFER_3572 yiaJ; DNA-binding transcriptional repressor K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
D EFER_3330 crp; DNA-binding transcriptional dual regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D EFER_1640 fnr; DNA-binding transcriptional dual regulator, global regulator of anaerobic growth K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D EFER_2249 yeiL; DNA-binding transcriptional activator of stationary phase nitrogen survival K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
D EFER_0641 iscR; DNA-binding transcriptional repressor K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D EFER_4231 nsrR; DNA-binding transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D EFER_3497 arsR; DNA-binding transcriptional repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D EFER_2803 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D EFER_0960 mntR; DNA-binding transcriptional regulator of mntH K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D EFER_4281 rpiR; DNA-binding transcriptional repressor K23238 rpiR; RpiR family transcriptional regulator, repressor of rpiB and als operon
D EFER_0745 yfeT; putative DNA-binding transcriptional regulator K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D EFER_1219 yebK; putative DNA-binding transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D EFER_3778 birA; bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase and DNA-binding transcriptional repressor, bio-5'-AMP-binding K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D EFER_3240 fis; global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D EFER_4492 trpR; DNA-binding transcriptional repressor, tryptophan-binding K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D EFER_2661 prpR; DNA-binding transcriptional activator K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D EFER_3165 sfsB; DNA-binding transcriptional activator of maltose metabolism K07724 ner; Ner family transcriptional regulator
D EFER_0083 sgrR; DNA-binding transcriptional regulator K11925 sgrR; SgrR family transcriptional regulator
D EFER_4487 nadR; bifunctional DNA-binding transcriptional repressor and NMN adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D EFER_4145 putative transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D EFER_0684 Hydrogenase-4 transcriptional activator K12146 hyfR; hydrogenase-4 transcriptional activator
D EFER_0369 norR; DNA-binding transcriptional activator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D EFER_0346 fhlA; DNA-binding transcriptional activator K15836 fhlA; formate hydrogenlyase transcriptional activator
D EFER_0185 cdaR; DNA-binding transcriptional activator K02647 cdaR; carbohydrate diacid regulator
D EFER_2348 modE; DNA-binding transcriptional dual regulator K02019 modE; molybdate transport system regulatory protein
D EFER_0345 Putative molybdenum-pterin-binding-protein K02019 modE; molybdate transport system regulatory protein
D EFER_3557 yiaG; putative transcriptional regulator K07726 K07726; putative transcriptional regulator
D EFER_3371 putative HTH-type transcriptional regulator yiaG K07726 K07726; putative transcriptional regulator
D EFER_4489 conserved hypothetical protein K07726 K07726; putative transcriptional regulator
D EFER_3468 nikR; DNA-binding transcriptional repressor, Ni-binding K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D EFER_3833 metJ; DNA-binding transcriptional repressor, S-adenosylmethionine-binding K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D EFER_1913 putA; fused DNA-binding transcriptional regulator; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D EFER_4316 Antitoxin RelB K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D EFER_4021 bglG; transcriptional antiterminator of the bgl operon K03488 licT; beta-glucoside operon transcriptional antiterminator
D EFER_3875 frvR; putative regulator K18531 frvR; putative frv operon regulatory protein
D EFER_1583 yohL; conserved hypothetical protein; similarity with yaiN K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D EFER_2582 bolA; regulator of penicillin binding proteins and beta lactamase transcription (morphogene) K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D EFER_p0005 parB; Plasmid Partition par B protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D EFER_3640 rfaH; DNA-binding transcriptional antiterminator K05785 rfaH; transcriptional antiterminator RfaH
D EFER_3215 argR; DNA-binding transcriptional dual regulator, L-arginine-binding K03402 argR; transcriptional regulator of arginine metabolism
D EFER_4328 putative arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D EFER_2433 nagC; DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine K02565 nagC; N-acetylglucosamine repressor
D EFER_1442 dgsA; DNA-binding transcriptional repressor K15545 mlc; transcriptional regulator of PTS gene
D EFER_3592 mtlR; DNA-binding repressor K02562 mtlR; mannitol operon repressor
D EFER_1651 tyrR; DNA-binding transcriptional dual regulator, tyrosine-binding K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D EFER_1902 cadC; transcriptional activator CadC K03765 cadC; transcriptional activator of cad operon
D EFER_0696 gcvR; DNA-binding transcriptional repressor, regulatory protein accessory to GcvA K03567 gcvR; glycine cleavage system transcriptional repressor
D EFER_1597 paaX; DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D EFER_1659 pspF; DNA-binding transcriptional activator K03974 pspF; psp operon transcriptional activator
D EFER_1656 pspC; DNA-binding transcriptional activator K03973 pspC; phage shock protein C
D EFER_1565 lsrR; DNA-binding transcriptional regulator K11531 lsrR; lsr operon transcriptional repressor
D EFER_2484 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D EFER_0445 conserved hypothetical protein of bacteriophage origin, putative COG3311, putative DNA binding K07733 alpA; prophage regulatory protein
D EFER_2794 putative regulatory protein K07733 alpA; prophage regulatory protein
D EFER_2887 yqgE; conserved hypothetical protein K07735 algH; putative transcriptional regulator
D EFER_0042 caiF; transcriptional activator K08277 caiF; transcriptional activator CaiF
D EFER_0168 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D EFER_2612 nrdR; transcriptional repressor of nrd genes K07738 nrdR; transcriptional repressor NrdR
D EFER_2738 crl; DNA-binding transcriptional regulator K11926 crl; sigma factor-binding protein Crl
D EFER_3390 rtcR; sigma 54-dependent transcriptional regulator of rtcBA expression K14414 rtcR; transcriptional regulatory protein RtcR
D EFER_0103 mraZ; conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:efe03021]
D EFER_3279 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D EFER_3767 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D EFER_3766 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D EFER_3941 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D EFER_3008 rpoD; RNA polymerase, sigma 70 (sigma D) factor K03086 rpoD; RNA polymerase primary sigma factor
D EFER_0328 rpoS; RNA polymerase, sigma S (sigma 38) factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D EFER_0501 rpoE; RNA polymerase, sigma 24 (sigma E) factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D EFER_3434 rpoH; RNA polymerase, sigma 32 (sigma H) factor K03089 rpoH; RNA polymerase sigma-32 factor
D EFER_3179 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D EFER_1171 fliA; RNA polymerase, sigma 28 (sigma F) factor K02405 fliA; RNA polymerase sigma factor FliA
D EFER_0068 hepA; RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D EFER_3148 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
D EFER_2609 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D EFER_3772 nusG; transcription termination factor K02601 nusG; transcription termination/antitermination protein NusG
D EFER_3199 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D EFER_3198 sspB; ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
D EFER_0502 rseA; anti-sigma factor K03597 rseA; sigma-E factor negative regulatory protein RseA
D EFER_0503 rseB; anti-sigma factor K03598 rseB; sigma-E factor negative regulatory protein RseB
D EFER_0504 rseC; RseC protein involved in reduction of the SoxR iron-sulfur cluster K03803 rseC; sigma-E factor negative regulatory protein RseC
D EFER_0168 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D EFER_3158 greA; transcription elongation factor K03624 greA; transcription elongation factor GreA
D EFER_3374 greB; transcription elongation factor K04760 greB; transcription elongation factor GreB
D EFER_3721 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D EFER_0212 rof; modulator of Rho-dependent transcription termination K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:efe03019]
D EFER_1844 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D EFER_3224 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D EFER_0507 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D EFER_4232 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D EFER_4216 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D EFER_3724 rhlB; ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D EFER_2311 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D EFER_3141 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D EFER_3679 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D EFER_0285 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D EFER_3143 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D EFER_3721 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D EFER_3857 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D EFER_0010 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D EFER_4195 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D EFER_4225 hfq; HF-I, host factor for RNA phage Q beta replication K03666 hfq; host factor-I protein
D EFER_0675 ppk; polyphosphate kinase, component of RNA degradosome K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D EFER_0166 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D EFER_2763 nudH; nucleotide hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D EFER_0378 csrA; pleiotropic regulatory protein for carbon source metabolism K03563 csrA; carbon storage regulator
D EFER_3230 csrD; inner membrane associated factor modulating specific RNAseE dependent RNA degradation pathways K18765 csrD; RNase E specificity factor CsrD
D EFER_3843 rraA; ribonuclease E (RNase E) inhibitor protein K02553 rraA; regulator of ribonuclease activity A
D EFER_4335 yjgD; conserved hypothetical protein K09893 rraB; regulator of ribonuclease activity B
D EFER_3182 yhbJ; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K06958 rapZ; RNase adapter protein RapZ
D EFER_1588 hrpA; ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D EFER_0171 hrpB; ATP-dependent (RNA) helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D EFER_misc_RNA_35 dsrA; DsrA K18502 dsrA; small regulatory RNA DsrA
D EFER_misc_RNA_16 sroB; SroB K18503 chiX; small regulatory RNA ChiX
D EFER_misc_RNA_55 ryhA; RyhA K18504 arcZ; small regulatory RNA ArcZ
D EFER_misc_RNA_14 tke1; tke1 K15841 glmY; small regulatory RNA GlmY
D EFER_misc_RNA_62 ryiA; RyiA K18505 glmZ; small regulatory RNA GlmZ
D EFER_misc_RNA_3 sgrS; SgrS K18506 sgrS; small regulatory RNA SgrS
D EFER_misc_RNA_57 ryhB; RyhB K18507 ryhB; small regulatory RNA RyhB
D EFER_misc_RNA_23 rybB; RybB K18508 rybB; small regulatory RNA RybB
D EFER_misc_RNA_28 rydC; RydC K18509 rydC; small regulatory RNA RydC
D EFER_misc_RNA_9 micA; MicA K18511 micA; small regulatory RNA MicA
D EFER_misc_RNA_29 micC; MicC K18512 micC; small regulatory RNA MicC
D EFER_misc_RNA_21 micF; MicF K18513 micF; small regulatory RNA MicF
D EFER_misc_RNA_7 csrB; CsrB K18515 csrB; small regulatory RNA CsrB
D EFER_misc_RNA_60 csrC; CsrC K18516 csrC; small regulatory RNA CsrC
D EFER_misc_RNA_27 rprA; RprA K18518 rprA; small regulatory RNA RprA
D EFER_misc_RNA_40 ryeE; RyeE K18520 cyaR; small regulatory RNA CyaR
D EFER_misc_RNA_6 gcvB; GcvB K18521 gcvB; small regulatory RNA GcvB
D EFER_misc_RNA_45 omrA; OmrA K18522 omrA; small regulatory RNA OmrA
D EFER_misc_RNA_46 omrB; OmrB K18523 omrB; small regulatory RNA OmrB
D EFER_misc_RNA_52 gadY; GadY K18525 gadY; small regulatory RNA GadY
D EFER_misc_RNA_64 istR; IstR K18526 istR; sRNA antisense regulator of TisB protein
D EFER_misc_RNA_61 spf; Spot42 K18527 spf; small regulatory RNA Spot 42
D EFER_misc_RNA_63 oxyS; OxyS K18528 oxyS; small regulatory RNA OxyS
C 03041 Spliceosome
C 03011 Ribosome [BR:efe03011]
D EFER_1055 rpsA; 30S ribosomal subunit protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D EFER_0191 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D EFER_3297 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D EFER_3280 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D EFER_3286 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D EFER_4253 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D EFER_3311 rpsG; 30S ribosomal subunit protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D EFER_3289 rpsH; 30S ribosomal subunit protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D EFER_3201 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D EFER_3304 rpsJ; 30S ribosomal subunit protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D EFER_3281 rpsK; 30S ribosomal subunit protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D EFER_3312 rpsL; 30S ribosomal subunit protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D EFER_3282 rpsM; 30S ribosomal subunit protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D EFER_3290 rpsN; 30S ribosomal subunit protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D EFER_3144 rpsO; 30S ribosomal subunit protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D EFER_0463 rpsP; 30S ribosomal subunit protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D EFER_3294 rpsQ; 30S ribosomal subunit protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D EFER_4255 rpsR; 30S ribosomal subunit protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D EFER_3299 rpsS; 30S ribosomal subunit protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D EFER_0015 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D EFER_3006 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D EFER_3770 rplA; 50S ribosomal subunit protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D EFER_3300 rplB; 50S ribosomal subunit protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D EFER_3303 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D EFER_3302 rplD; 50S ribosomal subunit protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D EFER_3291 rplE; 50S ribosomal subunit protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D EFER_3288 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D EFER_4256 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D EFER_3769 rplJ; 50S ribosomal subunit protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D EFER_3771 rplK; 50S ribosomal subunit protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D EFER_3768 rplL; 50S ribosomal subunit protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D EFER_3202 rplM; 50S ribosomal subunit protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D EFER_3293 rplN; 50S ribosomal subunit protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D EFER_3284 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D EFER_3296 rplP; 50S ribosomal subunit protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D EFER_3278 rplQ; 50S ribosomal subunit protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D EFER_3287 rplR; 50S ribosomal subunit protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D EFER_0466 rplS; 50S ribosomal subunit protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D EFER_1350 rplT; 50S ribosomal subunit protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D EFER_3163 rplU; 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D EFER_3298 rplV; 50S ribosomal subunit protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D EFER_3301 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D EFER_3292 rplX; 50S ribosomal subunit protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D EFER_3162 rpmA; 50S ribosomal subunit protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D EFER_3928 rpmB; 50S ribosomal subunit protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D EFER_3295 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D EFER_3285 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D EFER_3836 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D EFER_1839 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D EFER_3927 rpmG; 50S ribosomal subunit protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D EFER_3999 rpmH; 50S ribosomal subunit protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D EFER_1349 rpmI; 50S ribosomal subunit protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D EFER_2275 rplY; 50S ribosomal subunit protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D EFER_5S_1 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_4 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_3 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_8 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_6 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_7 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_2 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_5 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_16S_6 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_5 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_1 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_7 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_3 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_2 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_4 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_23S_1 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_7 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_4 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_2 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_3 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_5 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_6 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:efe03009]
D EFER_0507 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D EFER_4216 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D EFER_0508 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
D EFER_3160 obgE; GTPase involved in cell partioning and DNA repair K03979 obgE; GTPase [EC:3.6.5.-]
D EFER_0168 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D EFER_3148 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
D EFER_2609 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D EFER_3772 nusG; transcription termination factor K02601 nusG; transcription termination/antitermination protein NusG
D EFER_2273 rsuA; 16S rRNA pseudouridylate 516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D EFER_0062 ksgA; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D EFER_3272 rsmB; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D EFER_4412 rsmC; 16S RNA m2G1207 methylase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D EFER_3438 yhhF; putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D EFER_2885 yggJ; conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D EFER_1239 yebU; putative RNA AdoMet-dependent methyltransferase K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D EFER_4039 gidB; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D EFER_0104 mraW; S-adenosyl-dependent methyltransferase activity on membrane-located substrates K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D EFER_4349 yraL; putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D EFER_3490 yhiQ; putative SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D EFER_1253 rrmA; Ribosomal RNA large subunit methyltransferase A (rRNA (guanine-N(1)-)-methyltransferase) (23S rRNA m1G745 methyltransferase) K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D EFER_4233 rlmB; 23S rRNA (Gm2251)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D EFER_3156 rrmJ; 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D EFER_2301 ybiN; putative AdoMet-dependent methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D EFER_4394 ygjO; putative methyltransferase small domain K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D EFER_2469 ybeA; conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D EFER_1104 yccW; putative AdoMet-dependent methyltransferase, UPF0064 family K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D EFER_3492 yhiR; putative DNA (exogenous) processing protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D EFER_1085 ycbY; putative conserved AdoMet-dependent methyltransferase with RNA interaction domain K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D EFER_0261 ygdE; putative methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D EFER_0655 yfgB; putative Fe-S containing enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D EFER_0279 rumA; 23S rRNA (uracil-5)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D EFER_1002 rumB; 23S rRNA m(5)U747 methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D EFER_0067 rluA; pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D EFER_1688 rluB; 23S rRNA pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D EFER_1843 rluC; 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D EFER_0473 rluD; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D EFER_1795 ymfC; 23S rRNA pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D EFER_4084 yjbC; 23S rRNA pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D EFER_0493 yfiF; putative methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D EFER_4414 rimI; acetylase for 30S ribosomal subunit protein S18 K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D EFER_1863 rimJ; ribosomal-protein-S5-alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D EFER_0994 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D EFER_1506 rimL; Ribosomal-protein-serine acetyltransferase (Acetylating enzyme for N-terminal of ribosomal protein L7/L12) K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
D EFER_0464 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
D EFER_0976 yliG; putative AdoMet-dependent methyltransferase, UPF0004 family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D EFER_1050 ycaO; conserved hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D EFER_3238 prmA; methylase for 50S ribosomal subunit protein L11 K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D EFER_0833 prmB; N5-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D EFER_1802 ycfD; conserved hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D EFER_1844 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D EFER_3224 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D EFER_2888 yqgF; Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D EFER_1626 dbpA; ATP-dependent RNA helicase, specific for 23S rRNA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D EFER_3141 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D EFER_0497 srmB; ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D EFER_4215 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D EFER_0661 der; GTPase involved in ribosome synthesis and maintenance K03977 engA; GTPase
D EFER_4226 hflX; putative GTPase K03665 hflX; GTPase
D EFER_3266 yrdC; putative ribosome maturation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D EFER_3942 spoT; bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D EFER_3146 rbfA; 30s ribosome binding factor K02834 rbfA; ribosome-binding factor A
D EFER_3149 yhbC; conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
D EFER_0570 ybcJ; putative RNA-binding protein K14761 rlbA; ribosome-associated protein
D EFER_2468 ybeB; conserved hypothetical protein K09710 ybeB; ribosome-associated protein
D EFER_2443 ybeY; putative metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
D EFER_3157 yhbY; putative RNA-binding protein K07574 yhbY; RNA-binding protein
D EFER_3594 yibL; conserved hypothetical protein K14762 yibL; ribosome-associated protein
D EFER_4312 yjgA; conserved hypothetical protein K09889 yjgA; ribosome-associated protein
D EFER_1090 rmf; ribosome modulation factor K03812 rmf; ribosome modulation factor
D EFER_3180 yhbH; ribosome-associated, sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
D EFER_0471 yfiA; cold shock protein associated with 30S ribosomal subunit K05809 raiA; ribosome-associated inhibitor A
D EFER_1758 ychF; putative GTP-binding protein K06942 ychF; ribosome-binding ATPase
D EFER_1840 yceD; conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:efe03016]
D EFER_0900 elaC; binuclear zinc phosphodiesterase K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D EFER_3001 cca; fused tRNA nucleotidyl transferase; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D EFER_3389 rtcB; conserved hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D EFER_0770 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D EFER_0218 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D EFER_0018 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D EFER_2464 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D EFER_2199 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D EFER_2429 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D EFER_1197 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D EFER_1898 lysU; lysine tRNA synthetase, inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D EFER_2825 lysS; lysine tRNA synthetase, constitutive K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D EFER_1206 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D EFER_0377 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D EFER_1074 asnS; asparaginyl tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D EFER_1347 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D EFER_1042 serS; seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D EFER_0568 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D EFER_4339 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D EFER_0658 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D EFER_1351 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D EFER_1352 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D EFER_1406 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D EFER_3350 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D EFER_3892 dtd; D-tyr-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D EFER_1825 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D EFER_2902 yggH; tRNA (m7G46) methyltransferase, SAM-dependent K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D EFER_0219 yaeB; conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D EFER_0845 truA; pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D EFER_3145 truB; tRNA pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D EFER_0323 truD; pseudoruidine synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D EFER_0642 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D EFER_3266 yrdC; putative ribosome maturation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D EFER_4224 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D EFER_4003 trmE; GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D EFER_4040 gidA; glucose-inhibited cell-division protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D EFER_1301 selD; selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D EFER_4274 cysQ; PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D EFER_4000 rnpA; protein C5 component of RNase P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D EFER_misc_RNA_66 rnpB; M1 K01978 rnpB; M1 RNA
D EFER_1392 rnt; ribonuclease T (RNase T) K03683 rnt; ribonuclease T [EC:3.1.13.-]
D EFER_3935 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D EFER_2483 rna; ribonuclease I K01169 rna; ribonuclease I (enterobacter ribonuclease) [EC:4.6.1.21]
D EFER_1667 rnb; ribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D EFER_1276 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D EFER_0170 ligT; 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D EFER_4490 yjjK; fused putative transporter subunits of ABC superfamily: ATP-binding components K06020 ettA; energy-dependent translational throttle protein EttA
D EFER_3561 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D EFER_3560 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D EFER_0167 yadB; glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D EFER_0535 ybaK; conserved hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D EFER_1809 yeaK; conserved hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D EFER_0516 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D EFER_4138 yjbN; tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D EFER_3239 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D EFER_2225 dusC; tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D EFER_2441 miaB; isopentenyl-adenosine A37 tRNA methylthiolase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D EFER_1202 yecO; AdoMet-dependent methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D EFER_1201 yecP; conserved hypothetical protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D EFER_1065 smtA; putative AdoMet-dependent methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D EFER_4501 yjtD; rRNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D EFER_3795 trmA; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D EFER_0465 trmD; tRNA (guanine-1-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D EFER_0493 yfiF; putative methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D EFER_3943 trmH; tRNA (Guanosine-2'-O-)-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D EFER_0640 yfhQ; putative methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D EFER_3600 yibK; putative rRNA methylase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D EFER_0498 yfiC; putative S-adenosyl-L-methionine-dependent methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D EFER_0270 truC; tRNA pseudouridine synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D EFER_0067 rluA; pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D EFER_1797 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D EFER_1625 ydaO; putative C32 tRNA thiolase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D EFER_3444 tusA; sulfurtransferase K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D EFER_3313 tusB; methylsulfur transfer protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D EFER_3314 tusC; methylsulfur transfer protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D EFER_3315 tusD; methylsulfur transfer protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D EFER_1106 tusE; subunit of enzyme for 2-thio modification of mnm5s2U of tRNA anticodon U K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D EFER_0644 iscA; FeS cluster assembly protein K13628 iscA; iron-sulfur cluster assembly protein
D EFER_2834 ygfZ; enzyme component involved in 2-methylthio-6-iodeadenosine formation K06980 ygfZ; tRNA-modifying protein YgfZ
D EFER_0839 trmC; fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase; FAD-dependent demodification enzyme K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D EFER_2620 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D EFER_2573 queC; queuosine biosynthesis protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D EFER_0297 ygcM; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D EFER_0293 ygcF; conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D EFER_0266 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D EFER_4219 yjeS; putative Fe-S electron transport protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D EFER_0559 ybbB; tRNA 2-selenouridine synthase, selenophosphate-dependent K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D EFER_2619 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D EFER_2602 thiI; sulfurtransferase required for thiamine and 4-thiouridine biosynthesis K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D EFER_0211 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D EFER_0703 ypfI; putative hydrolase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D EFER_1273 yeaZ; putative peptidase K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D EFER_3005 gcp; O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D EFER_4221 yjeE; ATPase with strong ADP affinity K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D EFER_0255 ygdL; conserved hypothetical protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D EFER_4232 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D EFER_3143 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D EFER_p0053 conserved hypothetical protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:efe03012]
D EFER_1672 yciH; conserved hypothetical protein K03113 EIF1; translation initiation factor 1
D EFER_3147 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D EFER_3324 yheS; fused putative transporter subunits of ABC superfamily: ATP-binding components K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D EFER_0192 tsf; protein chain elongation factor EF-Ts K02357 tsf; elongation factor Ts
D EFER_3309 tufA; protein chain elongation factor EF-Tu (duplicate of tufB) K02358 tuf; elongation factor Tu
D EFER_3774 tufB; protein chain elongation factor EF-Tu (duplicate of tufA) K02358 tuf; elongation factor Tu
D EFER_3310 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G
D EFER_3584 selB; selenocysteinyl-tRNA-specific translation factor K03833 selB; selenocysteine-specific elongation factor
D EFER_3011 putative Selenocysteine-specific elongation factor (SelB translation factor) K03833 selB; selenocysteine-specific elongation factor
D EFER_1750 prfA; peptide chain release factor RF-1 K02835 prfA; peptide chain release factor 1
D EFER_0194 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D EFER_1749 prmC; N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D EFER_1757 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D EFER_1032 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D EFER_4199 efp; Elongation factor EF-P K02356 efp; elongation factor P
D EFER_2259 yeiP; putative translation elongation factor K02356 efp; elongation factor P
D EFER_4209 poxA; lysyl-tRNA synthetase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D EFER_4198 yjeK; putative lysine aminomutase K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D EFER_0837 yfcM; conserved hypothetical protein K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D EFER_2826 prfB; peptide chain release factor RF-2 K02836 prfB; peptide chain release factor 2
D EFER_4471 prfC; peptide chain release factor RF-3 K02837 prfC; peptide chain release factor 3
D EFER_2744 prfH; putative peptide chain release factor K02839 prfH; peptide chain release factor
D EFER_3275 yhdL; conserved hypothetical protein K09890 arfA; alternative ribosome-rescue factor
D EFER_0215 yaeJ; conserved hypothetical protein K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:efe03110]
D EFER_1030 clpA; ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D EFER_0475 clpB; protein disaggregation chaperone K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D EFER_2579 clpX; ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D EFER_3841 hslU; molecular chaperone and ATPase component of HslUV protease K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D EFER_2544 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D EFER_3880 htpG; Hsp90xo molecular chaperone K04079 HSP90A; molecular chaperone HtpG
D EFER_0010 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D EFER_0646 hscA; DnaK-like molecular chaperone specific for IscU K04044 hscA; molecular chaperone HscA
D EFER_2453 hscC; Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription K04045 hscC; molecular chaperone HscC
D EFER_2156 yegD; putative chaperone K04046 yegD; hypothetical chaperone protein
D EFER_4195 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D EFER_0011 dnaJ; chaperone Hsp40, co-chaperone with DnaK K03686 dnaJ; molecular chaperone DnaJ
D EFER_1147 cbpA; curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK K05516 cbpA; curved DNA-binding protein
D EFER_0066 djlA; DnaJ-like protein, membrane anchored K05801 djlA; DnaJ like chaperone protein
D EFER_0645 hscB; DnaJ-like molecular chaperone specific for IscU K04082 hscB; molecular chaperone HscB
D EFER_3367 hslO; heat shock protein Hsp33 K04083 hslO; molecular chaperone Hsp33
D EFER_0459 grpE; heat shock protein HSP70 cofactor K03687 GRPE; molecular chaperone GrpE
D EFER_3982 ibpA; heat shock chaperone K04080 ibpA; molecular chaperone IbpA
D EFER_3981 ibpB; heat shock chaperone K04081 ibpB; molecular chaperone IbpB
D EFER_3366 hslR; ribosome-associated heat shock protein Hsp15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D EFER_4194 groS; Cpn10 chaperonin GroES, small subunit of GroESL K04078 groES; chaperonin GroES
D EFER_0184 degP; serine endoprotease (protease Do), membrane-associated K04771 degP; serine protease Do [EC:3.4.21.107]
D EFER_3155 ftsH; protease, ATP-dependent zinc-metallo K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D EFER_4037 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D EFER_1137 conserved hypothetical protein K07346 fimC; fimbrial chaperone protein
D EFER_3403 putative fimbria chaperone protein precursor K07346 fimC; fimbrial chaperone protein
D EFER_3399 putative periplasmic pilin chaperone K07346 fimC; fimbrial chaperone protein
D EFER_3603 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D EFER_3859 cpxP; periplasmic protein combats stress K06006 cpxP; periplasmic protein CpxP/Spy
D EFER_1323 spy; envelope stress induced periplasmic protein K06006 cpxP; periplasmic protein CpxP/Spy
D EFER_3752 zraP; Zn-binding periplasmic protein K07803 zraP; zinc resistance-associated protein
D EFER_3035 hdeA; stress response protein, acid-resistance protein K19777 hdeA; acid stress chaperone HdeA
D EFER_3034 hdeB; Protein hdeB precursor (10K-L protein) Periplasmic protein, repressed by H-NS K19778 hdeB; acid stress chaperone HdeB
D EFER_0351 hypA; protein involved in nickel insertion into hydrogenases 3 K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D EFER_2934 hybF; protein involved with the maturation of hydrogenases 1 and 2 K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D EFER_0350 hypB; GTP hydrolase involved in nickel liganding into hydrogenases K04652 hypB; hydrogenase nickel incorporation protein HypB
D EFER_1193 torD; chaperone involved in maturation of TorA subunit of trimethylamine N-oxide reductase system I K03533 torD; TorA specific chaperone
D EFER_4184 putative twin-argninine leader-binding protein for anaerobic dehydrogenase K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D EFER_3336 ppiA; peptidyl-prolyl cis-trans isomerase A (rotamase A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D EFER_0567 ppiB; peptidyl-prolyl cis-trans isomerase B (rotamase B) K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D EFER_2576 ppiD; peptidyl-prolyl cis-trans isomerase (rotamase D) K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D EFER_3317 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D EFER_4267 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D EFER_0021 fkpB; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D EFER_3319 slyD; FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D EFER_3727 ppiC; peptidyl-prolyl cis-trans isomerase C (rotamase C) K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D EFER_0064 surA; peptidyl-prolyl cis-trans isomerase (PPIase) K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D EFER_3020 Putative thioredoxin (TRX) K03671 TXN; thioredoxin
D EFER_3723 trxA; thioredoxin 1 K03671 TXN; thioredoxin
D EFER_0491 trxC; thioredoxin 2 K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D EFER_0550 ybbN; putative thioredoxin domain-containing protein K05838 ybbN; putative thioredoxin
D EFER_3604 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3
D EFER_1390 ydhD; monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D EFER_3616 dsbA; periplasmic protein disulfide isomerase I K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D EFER_1770 dsbB; oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D EFER_2828 dsbC; protein disulfide isomerase II K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D EFER_4188 dipZ; fused thiol:disulfide interchange protein: activator of DsbC; conserved hypothetical protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D EFER_2285 ccmG; periplasmic thioredoxin of cytochrome c-type biogenesis K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
D EFER_2489 dsbG; periplasmic disulfide isomerase/thiol-disulphide oxidase K03805 dsbG; thiol:disulfide interchange protein DsbG
C 04131 Membrane trafficking [BR:efe04131]
D EFER_0654 ndk; multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D EFER_1585 gapC; glyceraldehyde-3-phosphate dehydrogenase C K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D EFER_1293 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D EFER_2354 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D EFER_1376 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D EFER_1218 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D EFER_2544 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D EFER_3880 htpG; Hsp90xo molecular chaperone K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:efe04121]
C 03051 Proteasome [BR:efe03051]
D EFER_2544 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D EFER_3880 htpG; Hsp90xo molecular chaperone K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:efe03032]
D EFER_0243 rnhA; ribonuclease HI, degrades RNA of DNA-RNA hybrids K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D EFER_4070 DNA modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D EFER_3754 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K05787 hupA; DNA-binding protein HU-alpha
D EFER_2577 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D EFER_1353 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit K04764 ihfA; integration host factor subunit alpha
D EFER_1056 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D EFER_3997 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator K02313 dnaA; chromosomal replication initiator protein
D EFER_4141 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D EFER_2067 Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D EFER_4398 dnaC; DNA biosynthesis protein K02315 dnaC; DNA replication protein DnaC
D EFER_3007 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D EFER_4161 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D EFER_0207 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D EFER_3996 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D EFER_4340 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D EFER_2466 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D EFER_1828 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D EFER_0244 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D EFER_2547 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D EFER_4413 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D EFER_1231 DNA polymerase III, theta subunit (modular protein) K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D EFER_0206 rnhB; ribonuclease HII, degrades RNA of DNA-RNA hybrids K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D EFER_3613 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D EFER_0763 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D EFER_1427 tus; inhibitor of replication at Ter, DNA-binding protein K10748 tus; DNA replication terminus site-binding protein
D EFER_3353 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D EFER_2421 seqA; regulatory protein for replication initiation K03645 seqA; negative modulator of initiation of replication
D EFER_0680 hda; ATPase regulatory factor involved in DnaA inactivation K10763 hda; DnaA-homolog protein
D EFER_0934 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D EFER_3994 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D EFER_2965 parC; DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D EFER_2971 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D EFER_1683 topA; DNA topoisomerase I, omega subunit K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D EFER_1302 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:efe03036]
D EFER_4070 DNA modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D EFER_0507 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D EFER_1718 hns; global nucleic acid-binding transcriptional dual regulator H-NS K03746 hns; DNA-binding protein H-NS
D EFER_0403 stpA; DNA binding protein, nucleoid-associated K11685 stpA; DNA-binding protein StpA
D EFER_3754 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K05787 hupA; DNA-binding protein HU-alpha
D EFER_2577 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D EFER_1353 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit K04764 ihfA; integration host factor subunit alpha
D EFER_1056 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D EFER_1147 cbpA; curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK K05516 cbpA; curved DNA-binding protein
D EFER_1146 cbpM; modulator of CbpA co-chaperone K18997 cbpM; chaperone modulatory protein CbpM
D EFER_4495 rob; DNA-binding transcriptional activator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D EFER_3997 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator K02313 dnaA; chromosomal replication initiator protein
D EFER_4346 yraO; DnaA initiator-associating factor for replication initiation K12961 diaA; DnaA initiator-associating protein
D EFER_1103 yccV; DNA-binding protein, hemimethylated K11940 hspQ; heat shock protein HspQ
D EFER_0954 dps; Fe-binding and storage protein K04047 dps; starvation-inducible DNA-binding protein
D EFER_3240 fis; global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D EFER_4225 hfq; HF-I, host factor for RNA phage Q beta replication K03666 hfq; host factor-I protein
D EFER_2853 argP; DNA-binding transcriptional activator, replication initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D EFER_1038 lrp; DNA-binding transcriptional dual regulator, leucine-binding K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D EFER_2278 yejK; nucleotide associated protein K06899 ndpA; nucleoid-associated protein
D EFER_1068 mukB; fused chromosome partitioning protein: putative nucleotide hydrolase; conserved hypothetical protein; conserved protein K03632 mukB; chromosome partition protein MukB
D EFER_1067 mukE; protein involved in chromosome partitioning K03804 mukE; chromosome partition protein MukE
D EFER_1066 mukF; Involved in chromosome partioning, Ca2+ binding protein K03633 mukF; chromosome partition protein MukF
D EFER_0116 ftsA; ATP-binding cell division protein involved in recruitment of FtsK to Z ring K03590 ftsA; cell division protein FtsA
D EFER_0320 ftsB; cell division protein K05589 ftsB; cell division protein FtsB
D EFER_3436 ftsE; transporter subunit: ATP-binding component of ABC superfamily K09812 ftsE; cell division transport system ATP-binding protein
D EFER_0106 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D EFER_1039 ftsK; DNA-binding membrane protein required for chromosome resolution and partitioning K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D EFER_0105 ftsL; membrane bound cell division protein at septum containing leucine zipper motif K03586 ftsL; cell division protein FtsL
D EFER_3839 ftsN; essential cell division protein K03591 ftsN; cell division protein FtsN
D EFER_0115 ftsQ; membrane anchored protein involved in growth of wall at septum K03589 ftsQ; cell division protein FtsQ
D EFER_0111 ftsW; integral membrane protein involved in stabilizing FstZ ring during cell division K03588 ftsW; cell division protein FtsW
D EFER_3435 ftsX; transporter subunit: membrane component of ABC superfamily K09811 ftsX; cell division transport system permease protein
D EFER_0117 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D EFER_0762 zipA; cell division protein involved in Z ring assembly K03528 zipA; cell division protein ZipA
D EFER_2847 zapA; protein that localizes to the cytokinetic ring K09888 zapA; cell division protein ZapA
D EFER_3844 yiiU; conserved hypothetical protein K09892 zapB; cell division protein ZapB
D EFER_1083 ycbW; conserved hypothetical protein K18657 zapC; cell division protein ZapC
D EFER_0123 yacF; conserved hypothetical protein K18778 zapD; cell division protein ZapD
D EFER_3203 yhcM; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K06916 zapE; cell division protein ZapE
D EFER_4266 ytfB; putative cell envelope opacity-associated protein K07269 ytfB; cell division protein YtfB
D EFER_0737 amiA; N-acetylmuramoyl-l-alanine amidase I K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D EFER_4222 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D EFER_0253 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D EFER_2554 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D EFER_1776 minC; cell division inhibitor K03610 minC; septum site-determining protein MinC
D EFER_1777 minD; membrane ATPase of the MinC-MinD-MinE system K03609 minD; septum site-determining protein MinD
D EFER_1778 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor
D EFER_1095 sulA; SOS cell division inhibitor K13053 sulA; cell division inhibitor SulA
D EFER_3932 ttk; division inhibitor K05501 slmA; TetR/AcrR family transcriptional regulator
D EFER_2421 seqA; regulatory protein for replication initiation K03645 seqA; negative modulator of initiation of replication
D EFER_3228 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D EFER_3227 mreC; cell wall structural complex MreBCD transmembrane component MreC K03570 mreC; rod shape-determining protein MreC
D EFER_3226 mreD; cell wall structural complex MreBCD transmembrane component MreD K03571 mreD; rod shape-determining protein MreD
D EFER_2471 mrdB; cell wall shape-determining protein K05837 rodA; rod shape determining protein RodA
D EFER_p0004 parA; Plasmid partition protein A K03496 parA; chromosome partitioning protein
D EFER_p0005 parB; Plasmid Partition par B protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D EFER_2965 parC; DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D EFER_2971 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D EFER_4040 gidA; glucose-inhibited cell-division protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D EFER_4039 gidB; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D EFER_3691 xerC; site-specific tyrosine recombinase K03733 xerC; integrase/recombinase XerC
D EFER_2829 xerD; site-specific tyrosine recombinase K04763 xerD; integrase/recombinase XerD
D EFER_2198 mrp; antiporter inner membrane protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D EFER_3334 fic; stationary-phase protein, cell division K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D EFER_3612 yihA; GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:efe03400]
D EFER_1639 ogt; O-6-alkylguanine-DNA:cysteine-protein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D EFER_2409 phr; deoxyribodipyrimidine photolyase, FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D EFER_0494 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D EFER_2903 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D EFER_1410 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D EFER_0121 mutT; nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D EFER_3931 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D EFER_0947 ada; fused DNA-binding transcriptional dual regulator; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D EFER_0948 alkB; oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
D EFER_3010 ygjF; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D EFER_2154 alkA; 3-methyl-adenine DNA glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D EFER_3546 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D EFER_3926 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D EFER_1316 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D EFER_2244 nfo; endonuclease IV with intrinsic 3'-5' exonuclease activity K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D EFER_3756 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D EFER_2827 recJ; ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D EFER_0763 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D EFER_3613 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D EFER_4160 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A
D EFER_2332 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
D EFER_1181 uvrC; excinuclease UvrABC, endonuclease subunit K03703 uvrC; excinuclease ABC subunit C
D EFER_1326 ydjQ; endonuclease of nucleotide excision repair K05984 cho; excinuclease Cho [EC:3.1.25.-]
D EFER_3689 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D EFER_2805 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D EFER_3767 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D EFER_3766 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D EFER_3279 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D EFER_3941 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D EFER_1278 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D EFER_0334 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D EFER_4223 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D EFER_2764 mutH; methyl-directed mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH
D EFER_2094 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D EFER_0666 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D EFER_2603 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D EFER_1229 exoX; DNA exonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D EFER_0207 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D EFER_3996 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D EFER_4340 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D EFER_2466 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D EFER_1828 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D EFER_0244 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D EFER_2547 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D EFER_4413 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D EFER_1231 DNA polymerase III, theta subunit (modular protein) K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D EFER_4161 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D EFER_3353 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D EFER_1944 vsr; DNA mismatch endonuclease of very short patch repair K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D EFER_2753 recB; exonuclease V (RecBCD complex), beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D EFER_2755 recC; exonuclease V (RecBCD complex), gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D EFER_2752 recD; exonuclease V (RecBCD complex), alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D EFER_0375 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D EFER_1211 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA
D EFER_1212 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D EFER_1209 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D EFER_2707 rusA; endonuclease RUS; DLP12 prophage K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
D EFER_0591 rusA; Crossover junction endodeoxyribonuclease K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
D EFER_4431 rusA; Crossover junction endodeoxyribonuclease K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
D EFER_3837 priA; Primosome factor n' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D EFER_4254 priB; primosomal protein N K02686 priB; primosomal replication protein N
D EFER_2550 priC; primosomal replication protein N'' K04067 priC; primosomal replication protein N''
D EFER_4399 dnaT; DNA biosynthesis protein (primosomal protein I) K02317 dnaT; DNA replication protein DnaT
D EFER_2629 Exonuclease sbcC K03546 sbcC; DNA repair protein SbcC/Rad50
D EFER_2628 sbcD; exonuclease, dsDNA, ATP-dependent K03547 sbcD; DNA repair protein SbcD/Mre11
D EFER_4486 radA; repair protein radA homolog K04485 radA; DNA repair protein RadA/Sms
D EFER_3995 recF; gap repair protein K03629 recF; DNA replication and repair protein RecF
D EFER_3944 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D EFER_0509 recO; gap repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D EFER_2545 recR; gap repair protein K06187 recR; recombination protein RecR
D EFER_0457 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D EFER_2631 rdgC; DNA-binding protein, non-specific K03554 rdgC; recombination associated protein RdgC
D EFER_0308 ygbT; conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D EFER_2274 yejH; putative nucleic acid ATP-dependent helicase K19789 radD; DNA repair protein RadD
D EFER_3113 yjgR; putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D EFER_0934 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D EFER_3994 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D EFER_1683 topA; DNA topoisomerase I, omega subunit K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D EFER_3754 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K05787 hupA; DNA-binding protein HU-alpha
D EFER_2577 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D EFER_3240 fis; global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D EFER_1353 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit K04764 ihfA; integration host factor subunit alpha
D EFER_1056 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D EFER_3679 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D EFER_1718 hns; global nucleic acid-binding transcriptional dual regulator H-NS K03746 hns; DNA-binding protein H-NS
D EFER_2749 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D EFER_1919 umuC; DNA polymerase V, subunit C K03502 umuC; DNA polymerase V
D EFER_p0006 samB; Protein samB K03502 umuC; DNA polymerase V
D EFER_1920 umuD; DNA polymerase V, subunit D K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D EFER_p0007 Protein impA [Contains: Protein impA'] (modular protein) K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D EFER_4134 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88]
D EFER_0590 putative LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D EFER_4430 conserved hypothetical protein from phage origin with LexA DNA binding domain K01356 lexA; repressor LexA [EC:3.4.21.88]
D EFER_0069 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D EFER_1868 dinI; DNA damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D EFER_4470 DNA damage-inducible protein in prophage (dinI-like) K12149 dinI; DNA-damage-inducible protein I
D EFER_0376 recX; regulatory protein for RecA K03565 recX; regulatory protein
D EFER_3379 yhgA; putative transposase K01157 rpnA; recombination-promoting nuclease RpnA [EC:3.1.21.-]
D EFER_0858 yfcI; putative transposase K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]
D EFER_0153 yadD; putative transposase K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-]
D EFER_3089 Conserved hypothetical protein, putative transposase K24089 rpnD; recombination-promoting nuclease RpnD [EC:3.1.21.-]
D EFER_0922 yfaD; Conserved hypothetical protein, putative transposase K24090 rpnE; recombination-promoting nuclease RpnE
D EFER_3726 rep; DNA helicase and single-stranded DNA-dependent ATPase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D EFER_1099 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D EFER_2309 dinG; ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D EFER_1272 yoaA; putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D EFER_1391 lhr; putative ATP-dependent helicase lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D EFER_0931 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D EFER_0395 nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D EFER_0930 nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D EFER_0394 nrdF; ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:efe03029]
D EFER_3147 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D EFER_0192 tsf; protein chain elongation factor EF-Ts K02357 tsf; elongation factor Ts
D EFER_3309 tufA; protein chain elongation factor EF-Tu (duplicate of tufB) K02358 tuf; elongation factor Tu
D EFER_3774 tufB; protein chain elongation factor EF-Tu (duplicate of tufA) K02358 tuf; elongation factor Tu
D EFER_3310 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G
D EFER_0508 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
D EFER_1406 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D EFER_2464 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D EFER_1206 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D EFER_1197 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D EFER_4161 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D EFER_0199 yaeT; outer membrane protein assembly factor K07277 SAM50; outer membrane protein insertion porin family
D EFER_0010 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D EFER_0459 grpE; heat shock protein HSP70 cofactor K03687 GRPE; molecular chaperone GrpE
D EFER_4195 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D EFER_4194 groS; Cpn10 chaperonin GroES, small subunit of GroESL K04078 groES; chaperonin GroES
D EFER_0011 dnaJ; chaperone Hsp40, co-chaperone with DnaK K03686 dnaJ; molecular chaperone DnaJ
D EFER_0642 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D EFER_0645 hscB; DnaJ-like molecular chaperone specific for IscU K04082 hscB; molecular chaperone HscB
D EFER_1390 ydhD; monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D EFER_2198 mrp; antiporter inner membrane protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D EFER_2589 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D EFER_4002 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D EFER_2544 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D EFER_3880 htpG; Hsp90xo molecular chaperone K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:efe02000]
D EFER_1058 msbA; fused lipid transporter subunits of ABC superfamily: membrane component; ATP-binding component K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D EFER_2569 mdlA; putative fused ATPase and permease component of metabolite transporter K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D EFER_2568 mdlB; putative fused ATPase and permease component of metabolite ABC transporter K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D EFER_0543 siiBA; type I secretion membrane protein, ATP binding protein, protein export K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D EFER_3483 siiBB; type I secretion membrane protein, ATP-binding protein, protein export K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D EFER_1034 cydC; fused cysteine transporter subunits of ABC superfamily: membrane component; ATP-binding component K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D EFER_1035 cydD; fused cysteine transporter subunits of ABC superfamily: membrane component; ATP-binding component K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D EFER_1027 macB; fused macrolide transporter subunits of ABC superfamily: ATP-binding component; membrane component K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D EFER_0949 yojI; fused multidrug transport subunits of ABC superfamily transporter: permease component/ATP-binding component K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
D EFER_1572 yddA; putative multidrug transporter fused subunits of ABC superfamily transporter: permease component; ATP-binding component K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D EFER_1086 uup; fused ATP-binding subunits of ABC superfamily protein involved in precise excision of transposons K15738 uup; ABC transport system ATP-binding/permease protein
D EFER_0748 cysP; thiosulfate transporter subunit; periplasmic-binding component of ABC superfamily K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D EFER_3856 sbp; sulfate transporter subunit; periplasmic-binding component of ABC superfamily K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D EFER_0749 cysU; sulfate/thiosulfate transporter subunit; membrane component of ABC superfamily K02046 cysU; sulfate/thiosulfate transport system permease protein
D EFER_0750 cysW; sulfate/thiosulfate transporter subunit; membrane component of ABC superfamily K02047 cysW; sulfate/thiosulfate transport system permease protein
D EFER_0751 cysA; sulfate/thiosulfate transporter subunit; ATP-binding component of ABC superfamily K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D EFER_2346 modA; molybdate transporter subunit; periplasmic-binding component of ABC superfamily K02020 modA; molybdate transport system substrate-binding protein
D EFER_2345 modB; molybdate transporter subunit; membrane component of ABC superfamily K02018 modB; molybdate transport system permease protein
D EFER_2344 modC; molybdate transporter subunit; ATP-binding component of ABC superfamily K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D EFER_2349 modF; fused molybdate transporter subunits of ABC superfamily: ATP-binding components K05776 modF; molybdate transport system ATP-binding protein
D EFER_2654 tauA; taurine transporter subunit; periplasmic-binding component of ABC superfamily K15551 tauA; taurine transport system substrate-binding protein
D EFER_2652 tauC; taurine transporter subunit; membrane component of ABC superfamily K15552 tauC; taurine transport system permease protein
D EFER_2653 tauB; taurine transporter subunit; ATP-binding component of ABC superfamily K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D EFER_1080 ssuA; alkanesulfonate transporter subunit; periplasmic-binding component of ABC superfamily K15553 ssuA; sulfonate transport system substrate-binding protein
D EFER_1078 ssuC; alkanesulfonate transporter subunit; membrane component of ABC superfamily K15554 ssuC; sulfonate transport system permease protein
D EFER_1077 ssuB; alkanesulfonate transporter subunit; ATP-binding component of ABC superfamily K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D EFER_0082 tbpA; thiamin transporter subunit; periplasmic-binding component of ABC superfamily K02064 thiB; thiamine transport system substrate-binding protein
D EFER_0081 thiP; fused thiamin transporter subunits of ABC superfamily: membrane components K02063 thiP; thiamine transport system permease protein
D EFER_0080 thiQ; thiamin transporter subunit; ATP-binding component of ABC superfamily K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D EFER_1287 potD; polyamine transporter subunit; periplasmic-binding component of ABC superfamily K11069 potD; spermidine/putrescine transport system substrate-binding protein
D EFER_1288 potC; polyamine transporter subunit; membrane component of ABC superfamily K11070 potC; spermidine/putrescine transport system permease protein
D EFER_1289 potB; polyamine transporter subunit; membrane component of ABC superfamily K11071 potB; spermidine/putrescine transport system permease protein
D EFER_1290 potA; polyamine transporter subunit; ATP-binding component of ABC superfamily K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D EFER_0997 potF; putrescine transporter subunit: periplasmic-binding component of ABC superfamily K11073 potF; putrescine transport system substrate-binding protein
D EFER_1000 potI; putrescine transporter subunit: membrane component of ABC superfamily K11074 potI; putrescine transport system permease protein
D EFER_0999 potH; putrescine transporter subunit: membrane component of ABC superfamily K11075 potH; putrescine transport system permease protein
D EFER_0998 potG; putrescine transporter subunit: ATP-binding component of ABC superfamily K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D EFER_1514 ydcS; putative spermidine/putrescine transporter subunit; periplasmic-binding component of ABC superfamily transporter K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D EFER_1517 ydcV; putative spermidine/putrescine transporter subunit; permease component of ABC superfamily K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D EFER_1516 ydcU; putative spermidine/putrescine transporter subunit; permease of ABC superfamily transporter K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D EFER_1515 ydcT; putative spermidine/putrescine transporter subunit; ATP-binding component of ABC superfamily tranporter K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D EFER_0391 proX; glycine betaine transporter subunit; periplasmic-binding component of ABC superfamily K02002 proX; glycine betaine/proline transport system substrate-binding protein
D EFER_0392 proW; glycine betaine transporter subunit; membrane component of ABC superfamily K02001 proW; glycine betaine/proline transport system permease protein
D EFER_0393 proV; glycine betaine transporter subunit; ATP-binding compoent of ABC superfamily K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D EFER_2218 yehZ; putative transporter subunit: periplasmic-binding component of ABC superfamily K05845 opuC; osmoprotectant transport system substrate-binding protein
D EFER_1447 putative ABC transporter periplasmic binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D EFER_2215 yehW; putative transporter subunit: permease component of ABC superfamily transporter K05846 opuBD; osmoprotectant transport system permease protein
D EFER_2217 yehY; putative transporter subunit: permease component of ABC superfamily K05846 opuBD; osmoprotectant transport system permease protein
D EFER_1446 putative ABC transporter membrane protein, membrane component K05846 opuBD; osmoprotectant transport system permease protein
D EFER_1448 putative ABC transporter membrane protein K05846 opuBD; osmoprotectant transport system permease protein
D EFER_1445 putative ABC transporter ATP/GTP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D EFER_2216 yehX; putative transporter subunit: ATP-binding component of ABC superfamily transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D EFER_1312 ynjB; conserved hypothetical protein K05777 ynjB; putative thiamine transport system substrate-binding protein
D EFER_1311 ynjC; fused putative transporter subunits of ABC superfamily: membrane components K05778 ynjC; putative thiamine transport system permease protein
D EFER_1310 ynjD; putative sulfate/thiosulfate transporter subunit: ATP-binding component of ABC superfamily transporter K05779 ynjD; putative thiamine transport system ATP-binding protein
D EFER_4126 malE; maltose transporter subunit; periplasmic-binding component of ABC superfamily K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D EFER_4125 malF; maltose transporter subunit; membrane component of ABC superfamily K10109 malF; maltose/maltodextrin transport system permease protein
D EFER_4124 malG; maltose transporter subunit; membrane component of ABC superfamily K10110 malG; maltose/maltodextrin transport system permease protein
D EFER_4127 malK; fused maltose transport subunit, ATP-binding component of ABC superfamily; regulatory protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D EFER_1123 araF; L-arabinose transporter subunit; periplasmic-binding component of ABC superfamily K10537 araF; L-arabinose transport system substrate-binding protein
D EFER_1125 araH; fused L-arabinose transporter subunits of ABC superfamily: membrane components K10538 araH; L-arabinose transport system permease protein
D EFER_1124 araG; fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D EFER_2235 mglB; methyl-galactoside transporter subunit; periplasmic-binding component of ABC superfamily K10540 mglB; methyl-galactoside transport system substrate-binding protein
D EFER_2233 mglC; methyl-galactoside transporter subunit; membrane component of ABC superfamily K10541 mglC; methyl-galactoside transport system permease protein
D EFER_2234 mglA; fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D EFER_4282 alsB; D-allose transporter subunit; periplasmic-binding component of ABC superfamily K10549 alsB; D-allose transport system substrate-binding protein
D EFER_4284 alsC; D-allose transporter subunit; membrane component of ABC superfamily K10550 alsC; D-allose transport system permease protein
D EFER_4283 alsA; fused D-allose transporter subunits of ABC superfamily: ATP-binding components K10551 alsA; D-allose transport system ATP-binding protein [EC:7.5.2.8]
D EFER_4050 rbsB; D-ribose transporter subunit; periplasmic-binding compoent of ABC superfamily K10439 rbsB; ribose transport system substrate-binding protein
D EFER_4049 rbsC; D-ribose transporter subunit; membrane component of ABC superfamily K10440 rbsC; ribose transport system permease protein
D EFER_4048 rbsA; fused D-ribose transporter subunits of ABC superfamily: ATP-binding components K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D EFER_4306 ytfQ; putative sugar transporter subunit: periplasmic-binding component of ABC superfamily K23508 ytfQ; galactofuranose transport system substrate-binding protein
D EFER_4309 yjfF; putative sugar transporter subunit: membrane component of ABC superfamily K23509 ytfT; galactofuranose transport system permease protein
D EFER_4308 ytfT; putative sugar transporter subunit: membrane component of ABC superfamily K23509 ytfT; galactofuranose transport system permease protein
D EFER_4307 ytfR; putative sugar transporter subunit: ATP-binding component of ABC superfamily K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D EFER_0342 putative ABC transporter, periplasmic sugar-binding protein precursor K17202 eryG; erythritol transport system substrate-binding protein
D EFER_2518 putative ABC transporter sugar-binding protein K17202 eryG; erythritol transport system substrate-binding protein
D EFER_0341 putative sugar transporter subunit: membrane component of ABC superfamily K17203 eryF; erythritol transport system permease protein
D EFER_2521 putative transport system permease for a carbohydrate-related molecule K17203 eryF; erythritol transport system permease protein
D EFER_0340 putative sugar transporter subunit of ABC superfamily: ATP-binding component K17204 eryE; erythritol transport system ATP-binding protein
D EFER_2520 putative transport system ATP-binding protein for a carbohydrate-related molecule K17204 eryE; erythritol transport system ATP-binding protein
D EFER_3425 ugpB; glycerol-3-phosphate transporter subunit; periplasmic-binding component of ABC superfamily K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D EFER_3424 ugpA; glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D EFER_3423 ugpE; glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D EFER_3422 ugpC; glycerol-3-phosphate transporter subunit; ATP-binding component of ABC superfamily K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D EFER_0549 ybbM; putative permease of an ABC transporter K02069 STAR2; UDP-glucose/iron transport system permease protein
D EFER_0548 ybbL; putative transporter subunit: ATP-binding component of ABC superfamily K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein
D EFER_1561 lsrB; AI2 transporter; periplasmic-binding component of ABC superfamily K10555 lsrB; AI-2 transport system substrate-binding protein
D EFER_1563 lsrC; AI2 transporter; membrane component of ABC superfamily K10556 lsrC; AI-2 transport system permease protein
D EFER_1562 lsrD; AI2 transporter; membrane component of ABC superfamily K10557 lsrD; AI-2 transport system permease protein
D EFER_1564 ego; fused AI2 transporter subunits of ABC superfamily: ATP-binding components K10558 lsrA; AI-2 transport system ATP-binding protein
D EFER_3170 yrbD; toluene transporter subunit: membrane component of ABC superfamily K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D EFER_3171 yrbE; toluene transporter subunit: membrane component of ABC superfamily K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D EFER_3172 yrbF; toluene transporter subunit: ATP-binding component of ABC superfamily K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D EFER_3169 yrbC; toluene transporter subunit: membrane component of ABC superfamily K07323 mlaC; phospholipid transport system substrate-binding protein
D EFER_3168 yrbB; conserved hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D EFER_4026 pstS; phosphate transporter subunit; periplasmic-binding component of ABC superfamily K02040 pstS; phosphate transport system substrate-binding protein
D EFER_4025 pstC; phosphate transporter subunit; membrane component of ABC superfamily K02037 pstC; phosphate transport system permease protein
D EFER_4024 pstA; phosphate transporter subunit; membrane component of ABC superfamily K02038 pstA; phosphate transport system permease protein
D EFER_4023 pstB; phosphate transporter subunit; ATP-binding component of ABC superfamily K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D EFER_0853 argT; lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D EFER_0856 hisM; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10015 hisM; histidine transport system permease protein
D EFER_0855 hisQ; histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily K10016 hisQ; histidine transport system permease protein
D EFER_0857 hisP; histidine/lysine/arginine/ornithine transporter subunit; ATP-binding component of ABC superfamily K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D EFER_0854 hisJ; histidine/lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily K10014 hisJ; histidine transport system substrate-binding protein
D EFER_0953 glnH; glutamine transporter subunit; periplasmic binding component of ABC superfamily K10036 glnH; glutamine transport system substrate-binding protein
D EFER_0952 glnP; glutamine transporter subunit; membrane component of ABC superfamily K10037 glnP; glutamine transport system permease protein
D EFER_0951 glnQ; glutamine transporter subunit; ATP-binding component of ABC superfamily K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D EFER_4217 artJ; arginine-binding periplasmic protein 2 precursor K09996 artJ; arginine transport system substrate-binding protein
D EFER_1003 artJ; arginine transporter subunit; periplasmic-binding component of ABC superfamily K09996 artJ; arginine transport system substrate-binding protein
D EFER_1006 artI; arginine transporter subunit; periplasmic-binding component of ABC superfamily K09997 artI; arginine transport system substrate-binding protein
D EFER_1004 artM; arginine transporter subunit; membrane component of ABC superfamily K09998 artM; arginine transport system permease protein
D EFER_1005 artQ; arginine transporter subunit; membrane component of ABC superfamily K09999 artQ; arginine transport system permease protein
D EFER_1007 artP; arginine transporter subunit; ATP-binding component of ABC superfamily K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D EFER_2448 gltI; glutamate and aspartate transporter subunit; periplasmic-binding component of ABC superfamily K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D EFER_2450 gltK; glutamate and aspartate transporter subunit; membrane component of ABC superfamily K10002 gltK; glutamate/aspartate transport system permease protein
D EFER_2449 gltJ; glutamate and aspartate transporter subunit; membrane component of ABC superfamily K10003 gltJ; glutamate/aspartate transport system permease protein
D EFER_2451 gltL; glutamate and aspartate transporter subunit; ATP-binding component of ABC superfamily K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D EFER_3247 aapJ; amino-acid transporter subunit; periplasmic-binding component of ABC superfamily K09969 aapJ; general L-amino acid transport system substrate-binding protein
D EFER_3248 aapQ; amino-acid transporter subunit; membrane component of ABC superfamily K09970 aapQ; general L-amino acid transport system permease protein
D EFER_3249 aapM; amino-acid transporter subunit; membrane component of ABC superfamily K09971 aapM; general L-amino acid transport system permease protein
D EFER_3250 aapP; amino-acid transporter subunit; ATP-binding component of ABC superfamily K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D EFER_1174 fliY; cystine transporter subunit; periplasmic-binding component of ABC superfamily K02424 tcyA; L-cystine transport system substrate-binding protein
D EFER_1176 yecS; putative transporter subunit: permease component of ABC superfamily transporter K10009 tcyB; L-cystine transport system permease protein
D EFER_1177 yecC; putative transporter subunit: ATP-binding component of ABC superfamily transporter K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D EFER_3431 livK; leucine transporter subunit; periplasmic-binding component of ABC superfamily K01999 livK; branched-chain amino acid transport system substrate-binding protein
D EFER_3433 livJ; leucine/isoleucine/valine transporter subunit; periplasmic-binding component of ABC superfamily K01999 livK; branched-chain amino acid transport system substrate-binding protein
D EFER_3430 livH; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01997 livH; branched-chain amino acid transport system permease protein
D EFER_3429 livM; leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily K01998 livM; branched-chain amino acid transport system permease protein
D EFER_3428 livG; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01995 livG; branched-chain amino acid transport system ATP-binding protein
D EFER_3427 livF; leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily K01996 livF; branched-chain amino acid transport system ATP-binding protein
D EFER_0221 metQ; DL-methionine transporter subunit; periplasmic-binding component of ABC superfamily K02073 metQ; D-methionine transport system substrate-binding protein
D EFER_0222 metI; DL-methionine transporter subunit; membrane component protein of ABC superfamily K02072 metI; D-methionine transport system permease protein
D EFER_0223 metN; DL-methionine transporter subunit; ATP-binding component of ABC superfamily K02071 metN; D-methionine transport system ATP-binding protein
D EFER_3661 Putative extracellular solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D EFER_2809 putative bacterial extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D EFER_2811 putative Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D EFER_1712 oppA; oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily K15580 oppA; oligopeptide transport system substrate-binding protein
D EFER_1647 mppA; murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit; periplasmic-binding component of ABC superfamily K15580 oppA; oligopeptide transport system substrate-binding protein
D EFER_1711 oppB; oligopeptide transporter subunit; membrane component of ABC superfamily K15581 oppB; oligopeptide transport system permease protein
D EFER_1710 oppC; oligopeptide transporter subunit; membrane component of ABC superfamily K15582 oppC; oligopeptide transport system permease protein
D EFER_1709 oppD; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K15583 oppD; oligopeptide transport system ATP-binding protein
D EFER_1708 oppF; oligopeptide transporter subunit; ATP-binding component of ABC superfamily K10823 oppF; oligopeptide transport system ATP-binding protein
D EFER_3541 dppA; dipeptide transporter; periplasmic-binding component of ABC superfamily K12368 dppA; dipeptide transport system substrate-binding protein
D EFER_3540 dppB; dipeptide transporter; membrane component of ABC superfamily K12369 dppB; dipeptide transport system permease protein
D EFER_3539 dppC; dipeptide transporter; membrane component of ABC superfamily K12370 dppC; dipeptide transport system permease protein
D EFER_3538 dppD; dipeptide transporter; ATP-binding component of ABC superfamily K12371 dppD; dipeptide transport system ATP-binding protein
D EFER_3537 dppF; dipeptide transporter; ATP-binding component of ABC superfamily K12372 dppF; dipeptide transport system ATP-binding protein
D EFER_1660 sapA; antimicrobial peptide transporter subunit; periplasmic-binding component of ABC superfamily transporter K19226 sapA; cationic peptide transport system substrate-binding protein
D EFER_1661 sapB; antimicrobial peptide transporter subunit; permease component of ABC superfamily transporter K19227 sapB; cationic peptide transport system permease protein
D EFER_1662 sapC; antimicrobial peptide transporter subunit; permease component of ABC superfamily transporter K19228 sapC; cationic peptide transport system permease protein
D EFER_1663 sapD; antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily transporter K19229 sapD; cationic peptide transport system ATP-binding protein
D EFER_1664 sapF; antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily transporter K19230 sapF; cationic peptide transport system ATP-binding protein
D EFER_0971 yliB; putative peptide transporter subunit: periplasmic-binding component of ABC superfamily K13889 gsiB; glutathione transport system substrate-binding protein
D EFER_0972 yliC; putative peptide transporter permease subunit: membrane component of ABC superfamily K13890 gsiC; glutathione transport system permease protein
D EFER_0973 yliD; putative peptide transporter permease subunit: membrane component of ABC superfamily K13891 gsiD; glutathione transport system permease protein
D EFER_0970 yliA; putative peptide transport fused subunits of ABC superfamily: ATP-binding components K13892 gsiA; glutathione transport system ATP-binding protein
D EFER_1783 putative substrate-binding transport protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D EFER_1782 putative inner membrane nickel transport protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D EFER_1781 putative inner membrane transport protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D EFER_1780 putative ATPase component of ABC-type transport system K02031 ddpD; peptide/nickel transport system ATP-binding protein
D EFER_1779 putative ATPase component of ABC-type transport system K02032 ddpF; peptide/nickel transport system ATP-binding protein
D EFER_2267 yejA; putative oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily transporter K13893 yejA; microcin C transport system substrate-binding protein
D EFER_2268 yejB; putative oligopeptide transporter subunit; permease component of ABC superfamily K13894 yejB; microcin C transport system permease protein
D EFER_2269 yejE; putative oligopeptide transporter subunit; permease component of ABC superfamily transporter K13895 yejE; microcin C transport system permease protein
D EFER_2270 yejF; putative fused oligopeptide transporter subunits of ABC superfamily: ATP-binding components K13896 yejF; microcin C transport system ATP-binding protein
D EFER_0175 fhuD; iron-hydroxamate transporter subunit; periplasmic-binding component of ABC superfamily K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D EFER_0176 fhuB; fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components K23228 fhuB; ferric hydroxamate transport system permease protein
D EFER_0174 fhuC; iron-hydroxamate transporter subunit; ATP-binding component of ABC superfamily K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D EFER_2502 fepB; iron-enterobactin transporter subunit; periplasmic-binding component of ABC superfamily K23185 fepB; ferric enterobactin transport system substrate-binding protein
D EFER_2504 fepD; iron-enterobactin transporter subunit; membrane component of ABC superfamily K23186 fepD; iron-siderophore transport system permease protein
D EFER_2505 fepG; iron-enterobactin transporter subunit; membrane component of ABC superfamily K23187 fepG; iron-siderophore transport system permease protein
D EFER_2506 fepC; iron-enterobactin transporter subunit; ATP-binding component of ABC superfamily K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D EFER_0181 btuF; vitamin B12 transporter subunit: periplasmic-binding component of ABC superfamily K06858 btuF; vitamin B12 transport system substrate-binding protein
D EFER_1354 btuC; vitamin B12 transporter subunit: membrane component of ABC superfamily K06073 btuC; vitamin B12 transport system permease protein
D EFER_1355 btuD; Vitamin B12 ABC transporter K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D EFER_1215 znuA; zinc transporter subunit: periplasmic-binding component of ABC superfamily K09815 znuA; zinc transport system substrate-binding protein
D EFER_1213 znuB; zinc transporter subunit: membrane component of ABC superfamily K09816 znuB; zinc transport system permease protein
D EFER_1214 znuC; zinc transporter subunit: ATP-binding component of ABC superfamily K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D EFER_4343 yjgP; conserved hypothetical protein; putative inner membrane protein K07091 lptF; lipopolysaccharide export system permease protein
D EFER_4344 yjgQ; conserved hypothetical protein; putative inner membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D EFER_3178 lptB; putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D EFER_2316 ybhR; putative transporter subunit: permease component of ABC superfamily K25180 ybhR; drug efflux transport system permease protein
D EFER_2315 ybhS; putative transporter subunit: permease component of ABC superfamily K25181 ybhS; drug efflux transport system permease protein
D EFER_2314 ybhF; putative transporter fused subunits of ABC superfamily: ATP-binding components K25182 ybhF; drug efflux transport system ATP-binding protein
D EFER_2313 ybhG; putative membrane fusion protein (MFP) component of efflux pump, membrane anchor; UPF0194 family K25183 ybhG; membrane fusion protein YbhG
D EFER_1280 lolC; outer membrane-specific lipoprotein transporter subunit; membrane component of ABC superfamily K09808 lolC_E; lipoprotein-releasing system permease protein
D EFER_1282 lolE; outer membrane-specific lipoprotein transporter subunit; membrane component of ABC superfamily K09808 lolC_E; lipoprotein-releasing system permease protein
D EFER_1281 lolD; outer membrane-specific lipoprotein transporter subunit; ATP-binding component of ABC superfamily K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D EFER_2288 ccmD; cytochrome c biogenesis protein K02196 ccmD; heme exporter protein D
D EFER_2289 ccmC; heme exporter subunit; membrane component of ABC superfamily K02195 ccmC; heme exporter protein C
D EFER_2290 ccmB; heme exporter subunit; membrane component of ABC superfamily K02194 ccmB; heme exporter protein B
D EFER_2291 ccmA; heme exporter subunit; ATP-binding component of ABC superfamily K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D EFER_3435 ftsX; transporter subunit: membrane component of ABC superfamily K09811 ftsX; cell division transport system permease protein
D EFER_3436 ftsE; transporter subunit: ATP-binding component of ABC superfamily K09812 ftsE; cell division transport system ATP-binding protein
D EFER_0149 yadH; putative transporter subunit: membrane component of ABC superfamily K01992 ABC-2.P; ABC-2 type transport system permease protein
D EFER_3477 yhhJ; putative transporter subunit: membrane component of ABC superfamily K01992 ABC-2.P; ABC-2 type transport system permease protein
D EFER_0148 yadG; putative transporter subunit: ATP-binding component of ABC superfamily K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D EFER_0554 ybbP; putative ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D EFER_0553 ybbA; putative transporter subunit: ATP-binding component of ABC superfamily K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D EFER_1370 sufC; component of SufBCD complex, ATP-binding component of ABC superfamily K09013 sufC; Fe-S cluster assembly ATP-binding protein
D EFER_0765 yfeH; putative sodium/bile acid symporter family (mazG-like) K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D EFER_1381 mdtK; multidrug efflux system transporter K26939 norM; MATE family, multidrug efflux pump
D EFER_1985 yeeO; putative Na+-driven multidrug efflux system K26937 dinF; MATE family, multidrug efflux pump
D EFER_4135 dinF; DNA-damage-inducible SOS response protein K26937 dinF; MATE family, multidrug efflux pump
D EFER_2882 galP; D-galactose transporter K08137 galP; MFS transporter, SP family, galactose:H+ symporter
D EFER_4123 xylE; D-xylose transporter K08138 xylE; MFS transporter, SP family, xylose:H+ symportor
D EFER_0085 setA; broad specificity sugar efflux system K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter
D EFER_2257 setB; lactose/glucose efflux system K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter
D EFER_2907 nupG; nucleoside transporter K03289 nupG; MFS transporter, NHS family, nucleoside permease
D EFER_0768 xapB; xanthosine transporter K11537 xapB; MFS transporter, NHS family, xanthosine permease
D EFER_0486 kgtP; alpha-ketoglutarate transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D EFER_4170 proP; proline/glycine betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D EFER_1984 shiA; shikimate transporter K08172 shiA; MFS transporter, MHS family, shikimate and dehydroshikimate transport protein
D EFER_3544 yhjX; putative transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D EFER_3195 nanT; sialic acid transporter K03290 nanT; MFS transporter, SHS family, sialic acid transporter
D EFER_4382 exuT; hexuronate transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D EFER_2667 Hexuronate transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D EFER_3986 dgoT; D-galactonate transporter K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter
D EFER_3068 putative 4-hydroxyphenylacetate permease hpaX K02511 hpaX; MFS transporter, ACS family, 4-hydroxyphenylacetate permease
D EFER_0792 putative tartrate transporter K02511 hpaX; MFS transporter, ACS family, 4-hydroxyphenylacetate permease
D EFER_3556 aromatic acid, possibly hydroxybenzoate, transporter K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter
D EFER_2597 4-hydroxybenzoate transporter K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter
D EFER_0090 putative transporter; MFS superfamily K26745 ydiM_N; MFS transporter, AAHS family, multidrug transporter
D EFER_1812 yeaN; putative transporter; MFS superfamily K25494 nimT; MFS transporter, CP family, 2-nitroimidazole transporter
D EFER_0636 hcaT; putative 3-phenylpropionic transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D EFER_3963 uhpT; hexose phosphate transporter K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D EFER_0926 glpT; sn-glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D EFER_3964 uhpC; membrane protein regulates uhpT expression K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D EFER_1737 narK; nitrate/nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D EFER_2769 ygeD; conserved hypothetical protein; putative inner membrane protein K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D EFER_2503 ybdA; enterobactin exporter K08225 entS; MFS transporter, ENTS family, enterobactin (siderophore) exporter
D EFER_2584 ampG; muropeptide transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D EFER_p0040 tetA; Tetracycline resistance protein, class B (TETA(B)) (Metal-tetracycline/H(+) antiporter) K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D EFER_2272 bcr; bicyclomycin/multidrug efflux system K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D EFER_3970 emrD; multidrug efflux system protein K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD
D EFER_1547 ydeA; wide-spectrum sugar (arabinose, isopropyl-beta-D-galactoside) exporter; MFS superfamily K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein
D EFER_0983 cmr; multidrug efflux system protein K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D EFER_1875 mdtG; putative metabolite efflux transporter K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein
D EFER_1864 mdtH; putative metabolite efflux permease K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein
D EFER_4006 mdtL; multidrug efflux system protein K08163 mdtL; MFS transporter, DHA1 family, multidrug resistance protein
D EFER_3090 yjiO; multidrug efflux system protein K23241 mdtM; MFS transporter, DHA1 family, multidrug resistance protein
D EFER_1387 ydhP; putative efflux protein; MFS family K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D EFER_0385 emrB; multidrug efflux system protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D EFER_1246 yebQ; putative transporter; MFS superfamily K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein
D EFER_2164 mdtD; multidrug efflux system protein K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D EFER_0531 fsr; fosmidomycin efflux system, member of the major facilitator superfamily K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D EFER_1439 ynfM; putative transporter; MFS type K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D EFER_1045 ycaD; putative MFS-type transporter protein K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D EFER_0053 yaaU; putative transporter K08368 yaaU; MFS transporter, putative metabolite transport protein
D EFER_0756 ptsI; PEP-protein phosphotransferase of PTS system (enzyme I) K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D EFER_2762 ptsP; fused PTS enzyme: PEP-protein phosphotransferase (enzyme I); GAF domain containing protein K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D EFER_0757 ptsH; phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) K02784 ptsH; phosphocarrier protein HPr
D EFER_3475 putative phosphocarrier HPr protein of a carbohydrate phosphotransferase system K02784 ptsH; phosphocarrier protein HPr
D EFER_3183 npr; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) K08485 ptsO; phosphocarrier protein NPr
D EFER_0785 ypdD; putative fused PTS enzymes (multiphosphoryl transfer protein): Hpr component; enzyme I component; enzyme IIA component K23991 ptsA; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.-]
D EFER_3815 ptsA; fused putative PTS enzymes: Hpr component; enzyme I component; enzyme IIA component K23991 ptsA; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.-]
D EFER_2256 fruB; fused fructose-specific PTS enzymes: IIA component; HPr component K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D EFER_0755 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D EFER_1826 ptsG; fused glucose-specific PTS enzymes: IIB component; IIC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D EFER_2430 nagE; fused N-acetyl glucosamine specific PTS enzymes: IIC component; IIB component; IIA component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D EFER_4020 bglF; fused beta-glucoside-specific PTS enzymes: IIA component; IIB component; IIC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D EFER_0362 ascF; fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component; IIC component K02753 ascF; beta-glucoside (arbutin/salicin/cellobiose) PTS system EIICB component [EC:2.7.1.-]
D EFER_4322 treB; fused trehalose(maltose)-specific PTS enzyme: IIB component; IIC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D EFER_0743 murP; putative fused PTS enzymes: IIB component; IIC component K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D EFER_3978 putative PTS system alpha-glucoside-specific EIICB component K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D EFER_2254 fruA; fused fructose-specific PTS enzymes: IIB component; IIC components K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D EFER_3872 frvA; enzyme IIA component of PTS K11201 frvA; fructose-like PTS system EIIA component [EC:2.7.1.-]
D EFER_0781 ypdH; putative enzyme IIB component of PTS K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-]
D EFER_3810 frwD; enzyme IIB component of PTS K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-]
D EFER_3813 frwB; putative enzyme IIB component of PTS K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-]
D EFER_0782 ypdG; putative enzyme IIC component of PTS K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component
D EFER_3814 frwC; enzyme IIC component of PTS K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component
D EFER_3873 frvB; fused putative PTS enzymes: IIB component; IIC component K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component
D EFER_2865 cmtB; putative mannitol-specific enzyme IIA component of PTS K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D EFER_2864 cmtA; fused mannitol-specific PTS enzymes: IIB component; IIC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D EFER_3590 mtlA; fused mannitol-specific PTS enzymes: IIA components; IIB components; IIC components K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D EFER_2373 mngA; fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component; IIB component; IIC component K11200 mngA; 2-O-A-mannosyl-D-glycerate PTS system EIIABC component [EC:2.7.1.195]
D EFER_1331 chbA; N,N'-diacetylchitobiose-specific enzyme IIA component of PTS K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D EFER_3959 putative chitobiose/cellobiose phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D EFER_1329 chbB; N,N'-diacetylchitobiose-specific enzyme IIB component of PTS K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D EFER_3956 putative PTS subunit cellobiose/Chitosan phosphotransferase enzyme IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D EFER_1330 chbC; N,N'-diacetylchitobiose-specific enzyme IIC component of PTS K02761 celB; cellobiose PTS system EIIC component
D EFER_3957 putative PTS subunit, cellobiose/chitosan-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D EFER_3471 putative phosphotransferase system enzyme subunit IIA K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D EFER_3472 putative phosphotransferase system enzyme IIB K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]
D EFER_3473 putative phosphotransferase system permease component IIC K02775 gatC; galactitol PTS system EIIC component
D EFER_1259 manX; fused mannose-specific PTS enzymes: IIA component; IIB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D EFER_1258 manY; mannose-specific enzyme IIC component of PTS K02795 manY; mannose PTS system EIIC component
D EFER_1257 manZ; mannose-specific enzyme IID component of PTS K02796 manZ; mannose PTS system EIID component
D EFER_4081 sorbose-specific phosphotransferase enzyme IIA component (PTS system) K02812 sorF; sorbose PTS system EIIA component [EC:2.7.1.206]
D EFER_4080 sorbose-specific phosphotransferase enzyme IIB component (PTS system) K02813 sorB; sorbose PTS system EIIB component [EC:2.7.1.206]
D EFER_4079 sorbose permease IIC component (PTS system) K02814 sorA; sorbose PTS system EIIC component
D EFER_4078 sorbose permease IID component K02815 sorM; sorbose PTS system EIID component
D EFER_4357 putative phosphotransferase system enzyme subunit (N-acetyl-galactosamine / galactosamine PTS system enzyme IIA component) K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D EFER_4360 agaV; N-acetylgalactosamine-specific enzyme IIB component of PTS K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D EFER_4359 putative enzyme IIC component of PTS K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D EFER_4358 putative hexose/hexosamine family PTS permease IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D EFER_4353 agaB; N-acetylgalactosamine-specific enzyme IIB component of PTS K10984 agaB; galactosamine PTS system EIIB component [EC:2.7.1.-]
D EFER_4352 agaC; N-acetylgalactosamine-specific enzyme IIC component of PTS K10985 agaC; galactosamine PTS system EIIC component
D EFER_4351 agaD; N-acetylgalactosamine-specific enzyme IID component of PTS K10986 agaD; galactosamine PTS system EIID component
D EFER_4248 ulaC; L-ascorbate-specific enzyme IIA component of PTS K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D EFER_0866 putative phosphotransferase enzyme IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D EFER_4247 ulaB; L-ascorbate-specific enzyme IIB component of PTS K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D EFER_0867 putative phosphotransferase transport system, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D EFER_4246 ulaA; L-ascorbate-specific enzyme IIC component of PTS K03475 ulaA; ascorbate PTS system EIIC component
D EFER_0868 putative phosphotransferase transport system, IIC component K03475 ulaA; ascorbate PTS system EIIC component
D EFER_3181 ptsN; sugar-specific enzyme IIA component of PTS K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D EFER_1022 aqpZ; aquaporin K06188 aqpZ; aquaporin Z
D EFER_3846 glpF; glycerol facilitator K02440 glpF; glycerol uptake facilitator
D EFER_2007 pduF; Propanediol diffusion facilitator K27261 pduF; propanediol uptake facilitator
D EFER_1184 kch; voltage-gated potassium channel K10716 kch; voltage-gated potassium channel
D EFER_1707 cikL; putative voltage-gated potassium channel K10716 kch; voltage-gated potassium channel
D EFER_2566 amtB; ammonium transporter K03320 amt; ammonium transporter, Amt family
D EFER_1408 gst; glutathionine S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D EFER_1568 putative Glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D EFER_0979 yliJ; putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D EFER_0862 yfcF; putative enzyme K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D EFER_1791 putative Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D EFER_3199 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D EFER_0898 conserved hypothetical protein; putative exported protein K07114 yfbK; Ca-activated chloride channel homolog
D EFER_1107 yccA; conserved hypothetical protein; putative inner membrane protein K19416 yccA; modulator of FtsH protease
D EFER_1049 focA; formate transporter K06212 focA; formate transporter
D EFER_3339 nirC; nitrite transporter K02598 nirC; nitrite transporter
D EFER_3274 mscL; mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D EFER_2552 kefA; fused conserved hypothetical protein; mechanosensitive channel protein K05802 mscK; potassium-dependent mechanosensitive channel
D EFER_4213 yjeP; putative mechanosensitive channel K22051 mscM; miniconductance mechanosensitive channel
D EFER_2856 mscS; mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D EFER_2300 ybiO; putative membrane protein K22044 ybiO; moderate conductance mechanosensitive channel
D EFER_1646 ynaI; conserved hypothetical protein; putative inner membrane protein K16052 ynaI; MscS family membrane protein
D EFER_2532 ybdG; putative membrane protein; putative channel K16053 ybdG; miniconductance mechanosensitive channel
D EFER_1131 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA
D EFER_2750 mbhA; flagellar system protein K02557 motB; chemotaxis protein MotB
D EFER_1132 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB
D EFER_2947 exbB; membrane spanning protein in TonB-ExbB-ExbD complex K03561 exbB; biopolymer transport protein ExbB
D EFER_2946 exbD; membrane spanning protein in TonB-ExbB-ExbD complex K03559 exbD; biopolymer transport protein ExbD
D EFER_2367 tolQ; membrane spanning protein in TolA-TolQ-TolR complex K03562 tolQ; biopolymer transport protein TolQ
D EFER_2366 tolR; membrane spanning protein in TolA-TolQ-TolR complex K03560 tolR; biopolymer transport protein TolR
D EFER_3686 corA; magnesium/nickel/cobalt transporter K03284 corA; magnesium transporter
D EFER_1629 ydaN; putative divalent cation transporter K16074 zntB; zinc transporter
D EFER_2479 crcB; conserved hypothetical protein; putative inner membrane protein associated with chromosome condensation K06199 crcB; fluoride exporter
D EFER_1554 yneE; conserved hypothetical protein; putative inner membrane protein K08994 yneE; ion channel-forming bestrophin family protein
D EFER_4277 ytfL; conserved hypothetical protein; putative inner membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D EFER_0460 yfjD; conserved hypothetical protein; putative inner membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D EFER_1073 ompF; outer membrane porin 1a (Ia;b;F) K09476 ompF; outer membrane pore protein F
D EFER_1948 Outer membrane protein N precursor (porin) K09476 ompF; outer membrane pore protein F
D EFER_2737 phoE; outer membrane phosphoporin protein E K11929 phoE; outer membrane pore protein E
D EFER_0945 ompC; outer membrane porin protein C K09475 ompC; outer membrane pore protein C
D EFER_1949 nmpC; outer membrane porin; DLP12 prophage K16076 nmpC; outer membrane porin protein LC
D EFER_1487 putative outer membrane porin protein precursor K16076 nmpC; outer membrane porin protein LC
D EFER_1623 ompN; outer membrane pore protein N, non-specific K14062 ompN; outer membrane protein N
D EFER_4128 lamB; maltose outer membrane porin (maltoporin) K02024 lamB; maltoporin
D EFER_3960 putative outer membrane porin K02024 lamB; maltoporin
D EFER_4018 bglH; carbohydrate-specific outer membrane porin, cryptic K10124 bglH; carbohydrate-specific outer membrane porin
D EFER_1094 ompA; outer membrane protein A (3a;II*;G;d) K03286 TC.OOP; OmpA-OmpF porin, OOP family
D EFER_0956 ompX; outer membrane protein K11934 ompX; outer membrane protein X
D EFER_0819 fadL; long-chain fatty acid outer membrane transporter K06076 fadL; long-chain fatty acid transport protein
D EFER_2614 tsx; nucleoside channel, receptor of phage T6 and colicin K K05517 tsx; nucleoside-specific channel-forming protein
D EFER_3402 putative outer membrane export usher protein aufC K07347 fimD; outer membrane usher protein
D EFER_1138 conserved hypothetical protein K07347 fimD; outer membrane usher protein
D EFER_0161 htrE; outer membrane usher protein K07347 fimD; outer membrane usher protein
D EFER_2194 putative Paral outer membrane protein, putative exported protein K07347 fimD; outer membrane usher protein
D EFER_2876 putative beta-barrel outer membrane protein, similar to AidA-I adhesin-like protein K12678 aidA-I; autotransporter family porin
D EFER_1785 conserved hypothetical protein; putative exported protein K12678 aidA-I; autotransporter family porin
D EFER_0932 yfaL; adhesin K07279 yfaL; autotransporter family porin
D EFER_2512 fepA; iron-enterobactin outer membrane transporter K19611 fepA; ferric enterobactin receptor
D EFER_2303 fiu; putative TonB-dependent iron outer membrane transporter K16090 fiu; catecholate siderophore receptor
D EFER_3793 btuB; vitamin B12/cobalamin outer membrane transporter K16092 btuB; vitamin B12 transporter
D EFER_2240 cirA; ferric iron-catecholate outer membrane transporter K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D EFER_0173 fhuA; ferrichrome outer membrane transporter K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D EFER_1454 yncD; putative iron outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D EFER_2538 cusC; copper/silver efflux system, outer membrane component K07796 cusC; outer membrane protein, copper/silver efflux system
D EFER_2976 tolC; transport channel K12340 tolC; outer membrane protein
D EFER_3482 siiCB; outer membrane export protein K12543 lapE; outer membrane protein, adhesin transport system
D EFER_0541 siiCA; outer membrane transport protein, type I secretion K12543 lapE; outer membrane protein, adhesin transport system
D EFER_4291 yjcP; outer membrane factor of efflux pump K15550 mdtP; outer membrane protein, multidrug efflux system
D EFER_2146 wza; lipoprotein required for capsular polysaccharide translocation through the outer membrane K01991 wza; polysaccharide biosynthesis/export protein
D EFER_0199 yaeT; outer membrane protein assembly factor K07277 SAM50; outer membrane protein insertion porin family
D EFER_0660 yfgL; protein assembly complex, lipoprotein component K17713 bamB; outer membrane protein assembly factor BamB
D EFER_0698 nlpB; lipoprotein K07287 bamC; outer membrane protein assembly factor BamC
D EFER_0472 yfiO; putative lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D EFER_0456 smpA; small membrane lipoprotein K06186 bamE; outer membrane protein assembly factor BamE
D EFER_4300 ytfM; conserved hypothetical protein; putative outer membrane protein and surface antigen K07278 tamA; translocation and assembly module TamA
D EFER_4301 ytfN; conserved hypothetical protein K09800 tamB; translocation and assembly module TamB
D EFER_3596 putative exported protein; putative outer membrane protein K21449 ata; trimeric autotransporter adhesin
D EFER_3177 lptA; putative lipopolysaccharide transport protein A: periplasmic-binding component of ABC superfamily K09774 lptA; lipopolysaccharide export system protein LptA
D EFER_3176 yrbK; conserved hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC
D EFER_0065 imp; exported protein required for envelope biosynthesis and integrity K04744 lptD; LPS-assembly protein
D EFER_2465 rlpB; minor lipoprotein K03643 lptE; LPS-assembly lipoprotein
D EFER_3515 bcsC; cellulose synthase subunit K20543 bcsC; cellulose synthase operon protein C
D EFER_2444 ybeX; putative protein involved in divalent ion export K06189 corC; hemolysin (HlyC) family protein
D EFER_2226 yohJ; conserved hypothetical protein; putative inner membrane protein K06518 cidA; holin-like protein
D EFER_2008 putative propanediol utilization protein, polyhedral bodies (pduA-like) K27260 pduA; bacterial microcompartment shell protein
D EFER_0722 cchA; putative carboxysome-like ethanolaminosome structural protein, ethanolamine utilization protein K04027 eutM; ethanolamine utilization protein EutM
D EFER_2533 pheP; phenylalanine transporter K11732 pheP; phenylalanine-specific permease
D EFER_2241 lysP; lysine transporter K11733 lysP; lysine-specific permease
D EFER_0132 aroP; aromatic amino acid transporter K11734 aroP; aromatic amino acid transport protein AroP
D EFER_0409 gabP; gamma-aminobutyrate transporter K11735 gabP; GABA permease
D EFER_2623 proY; proline transporter K11736 proY; proline-specific permease ProY
D EFER_4268 cycA; D-alanine/D-serine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter
D EFER_1456 ansP; L-asparagine transporter K11738 ansP; L-asparagine permease
D EFER_2419 potE; putrescine/proton symporter: putrescine/ornithine antiporter K03756 potE; putrescine:ornithine antiporter
D EFER_1901 cadB; putative lysine/cadaverine transporter K03757 cadB; cadaverine:lysine antiporter
D EFER_1432 ydgI; putative arginine/ornithine antiporter transporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D EFER_1577 gadC; glutamate:gamma-aminobutyric acid antiporter K20265 gadC; glutamate:GABA antiporter
D EFER_4193 yjeH; transporter K16263 yjeH; amino acid efflux transporter
D EFER_2358 zitB; zinc efflux system K16264 czcD; cobalt-zinc-cadmium efflux system protein
D EFER_3858 fieF; zinc transporter K13283 fieF; ferrous-iron efflux pump FieF
D EFER_2984 ygiE; zinc transporter K07238 TC.ZIP; zinc transporter, ZIP family
D EFER_2534 cusA; copper/silver efflux system, membrane component K07787 cusA; copper/silver efflux system protein
D EFER_3039 mdtF; multidrug transporter, RpoS-dependent K18899 mdtF; multidrug efflux pump
D EFER_2555 acrB; multidrug efflux system protein K18138 acrB; multidrug efflux pump
D EFER_0708 acrD; aminoglycoside/multidrug efflux system K18324 acrD; multidrug efflux pump
D EFER_3245 acrF; multidrug efflux system protein K18142 acrF; multidrug efflux pump
D EFER_2162 mdtB; multidrug efflux system, subunit B K07788 mdtB; multidrug efflux pump
D EFER_2163 mdtC; multidrug efflux system, subunit C K07789 mdtC; multidrug efflux pump
D EFER_2000 Putative membrane transport protein precursor K03297 emrE; small multidrug resistance pump
D EFER_2001 Putative multidrug resistance protein K03297 emrE; small multidrug resistance pump
D EFER_4202 sugE; large cation (quaternary ammonium) efflux transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE
D EFER_1542 eamA; cysteine and O-acetyl-L-serine efflux system K15268 eamA; O-acetylserine/cysteine efflux transporter
D EFER_0955 rhtA; threonine and homoserine efflux system K11939 rhtA; inner membrane transporter RhtA
D EFER_3864 rhaT; L-rhamnose:proton symporter K02856 rhaT; L-rhamnose-H+ transport protein
D EFER_3683 rarD; putative chloramphenicol resistance permease K05786 rarD; chloramphenicol-sensitive protein RarD
D EFER_1450 ydcZ; conserved hypothetical protein; putative inner membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D EFER_0911 yfbW; conserved hypothetical protein; inner membrane protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D EFER_1524 ynfA; conserved hypothetical protein; putative inner membrane protein K09771 TC.SMR3; small multidrug resistance family-3 protein
D EFER_3384 gntT; gluconate transporter, high-affinity GNT I system K06155 gntT; Gnt-I system high-affinity gluconate transporter
D EFER_3972 dsdX; putative transporter K13629 dsdX; D-serine transporter
D EFER_3412 gntU; gluconate transporter, low affinity GNT 1 system K06156 gntU; Gnt-I system low-affinity gluconate transporter
D EFER_4190 dcuA; C4-dicarboxylate antiporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D EFER_4177 dcuB; C4-dicarboxylate antiporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D EFER_3597 lldP; L-lactate permease K00427 lldP; L-lactate permease
D EFER_0048 caiT; L-carnitine/gamma-butyrobetaine antiporter K05245 caiT; L-carnitine/gamma-butyrobetaine antiporter
D EFER_1744 chaA; calcium/sodium:proton antiporter K07300 chaA; Ca2+:H+ antiporter
D EFER_3173 yrbG; putative calcium/sodium:proton antiporter K07301 yrbG; cation:H+ antiporter
D EFER_3486 pitA; phosphate transporter, low-affinity K16322 pit; low-affinity inorganic phosphate transporter
D EFER_3237 panF; pantothenate:sodium symporter K14392 panF; sodium/pantothenate symporter
D EFER_1912 putP; proline:sodium symporter K11928 putP; sodium/proline symporter
D EFER_4298 actP; acetate transporter K14393 actP; cation/acetate symporter
D EFER_4295 gltP; glutamate/aspartate:proton symporter K11102 gltP; proton glutamate symport protein
D EFER_3513 dctA; C4-dicarboxylic acid, orotate and citrate transporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D EFER_4387 sstT; sodium:serine/threonine symporter K07862 sstT; serine/threonine transporter
D EFER_p0045 jemA; Sodium/glutamate symport carrier protein (Glutamate permease) JemA K03312 gltS; glutamate:Na+ symporter, ESS family
D EFER_3946 gltS; glutamate transporter K03312 gltS; glutamate:Na+ symporter, ESS family
D EFER_0013 nhaA; sodium-proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D EFER_1769 nhaB; sodium:proton antiporter K03314 nhaB; Na+:H+ antiporter, NhaB family
D EFER_4166 yjcE; putative cation/proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D EFER_1764 cvrA; putative cation/proton antiporter K11105 cvrA; potassium/hydrogen antiporter
D EFER_0055 kefC; potassium:proton antiporter K11745 kefC; glutathione-regulated potassium-efflux system protein KefC
D EFER_0054 kefF; glutathione-regulated potassium-efflux system ancillary protein KefF K11746 kefF; glutathione-regulated potassium-efflux system ancillary protein KefF
D EFER_3321 kefB; potassium:proton antiporter K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D EFER_3322 kefG; component of potassium effux complex with KefB K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D EFER_0530 ybaL; putative monovalent cation:proton antiporter (CPA2 family) K26735 KEA4_5_6; K+:H+ antiporter
D EFER_3632 trkH; potassium transporter K03498 trkH; trk/ktr system potassium uptake protein
D EFER_1950 trkG; Trk system potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein
D EFER_3273 trkA; NAD-binding component of TrK potassium transporter K03499 trkA; trk/ktr system potassium uptake protein
D EFER_2784 codB; cytosine transporter K10974 codB; cytosine permease
D EFER_0679 uraA; uracil transporter K02824 uraA; uracil permease
D EFER_3947 yicE; putative transporter K16345 xanP; xanthine permease XanP
D EFER_4165 yjcD; putative permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D EFER_4012 yieG; conserved hypothetical protein; putative inner membrane protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D EFER_0776 nupC; nucleoside (except guanosine) transporter K11535 nupC; nucleoside transport protein
D EFER_2250 yeiM; putative sodium/proton nucleoside transporter K16324 psuT; putative pseudouridine transporter
D EFER_2246 yeiJ; putative sodium/proton nucleoside transporter K16325 nupX; nucleoside permease
D EFER_1117 tyrP; tyrosine transporter K03834 tyrP; tyrosine-specific transport protein
D EFER_3139 mtr; tryptophan transporter of high affinity K03835 mtr; tryptophan-specific transport protein
D EFER_4005 tnaB; tryptophan transporter of low affinity K03836 tnaB; low affinity tryptophan permease
D EFER_0264 sdaC; putative serine transporter K03837 sdaC; serine transporter
D EFER_3049 tdcC; L-threonine/L-serine transporter K03838 tdcC; threonine transporter
D EFER_3535 yhjV; transporter K26603 yhjV; inner membrane transport protein
D EFER_0178 clcA; chloride channel, voltage-gated K03281 clcA; chloride channel protein, CIC family
D EFER_1444 clcB; putative Voltage-gated ClC-type chloride channel protein K03281 clcA; chloride channel protein, CIC family
D EFER_0779 yfeO; putative ion channel protein K03281 clcA; chloride channel protein, CIC family
D EFER_1755 ychM; putative transporter K03321 TC.SULP; sulfate permease, SulP family
D EFER_0777 mntH; manganese/divalent cation transporter K03322 mntH; manganese transport protein
D EFER_1531 putative C4-dicarboxylate transporter, small permease protein, putative Tripartite ATP-independent transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D EFER_1529 Putative TRAP dicarboxylate transporter, DctM subunit precursor, putative transmembrane protein K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D EFER_3576 yiaN; transporter K21393 yiaN; TRAP-type transport system large permease protein
D EFER_1532 putative C4-dicarboxylate transporter, large permease protein, putative TRAP dicarboxylate transporter, DctM subunit K21393 yiaN; TRAP-type transport system large permease protein
D EFER_3575 yiaM; transporter K21394 yiaM; TRAP-type transport system small permease protein
D EFER_3577 yiaO; transporter K21395 yiaO; TRAP-type transport system periplasmic protein
D EFER_4075 yjbB; putative transporter K03324 yjbB; phosphate:Na+ symporter
D EFER_3498 arsB; arsenite/antimonite transporter K03893 arsB; arsenical pump membrane protein
D EFER_2482 dcuC; anaerobic C4-dicarboxylate transport K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D EFER_3712 wzxE; O-antigen translocase K16693 wzxE; enterobacterial common antigen flippase
D EFER_2130 wzxC; colanic acid exporter K16695 wzxC; lipopolysaccharide exporter
D EFER_1860 mviN; conserved hypothetical protein; putative inner membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D EFER_4046 trkD; potassium transporter K03549 kup; KUP system potassium uptake protein
D EFER_2855 argO; arginine transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D EFER_3676 rhtB; neutral amino-acid efflux system K05834 rhtB; homoserine/homoserine lactone efflux protein
D EFER_3678 rhtC; threonine efflux system K05835 rhtC; threonine efflux protein
D EFER_2663 yahN; neutral amino-acid efflux system K03329 yahN; amino acid exporter
D EFER_1817 yeaS; putative neutral amino-acid efflux system K11250 leuE; leucine efflux protein
D EFER_0389 ygaZ; putative transporter K26605 azlC; branched chain amino acid efflux pump
D EFER_0388 ygaH; conserved hypothetical protein; putative inner membrane protein K26606 azlD; branched chain amino acid efflux pump
D EFER_3654 conserved hypothetical protein; putative membrane protein K07793 tctA; putative tricarboxylic transport membrane protein
D EFER_0273 conserved hypothetical protein; putative membrane protein K07793 tctA; putative tricarboxylic transport membrane protein
D EFER_0078 putative membrane protein K07793 tctA; putative tricarboxylic transport membrane protein
D EFER_0077 putative membrane protein K07794 tctB; putative tricarboxylic transport membrane protein
D EFER_0274 hypothetical protein; putative membrane protein K07794 tctB; putative tricarboxylic transport membrane protein
D EFER_3653 putative permease subunit K07794 tctB; putative tricarboxylic transport membrane protein
D EFER_0272 conserved hypothetical protein; putative periplasmic binding protein K07795 tctC; putative tricarboxylic transport membrane protein
D EFER_3652 putative periplasmic binding protein K07795 tctC; putative tricarboxylic transport membrane protein
D EFER_3218 aaeB; p-hydroxybenzoic acid efflux system component K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB
D EFER_4290 Multidrug resistance protein MdtO K15547 mdtO; multidrug resistance protein MdtO
D EFER_0683 perM; putative permease K03548 perM; putative permease
D EFER_3445 yhhQ; conserved hypothetical protein; putative inner membrane protein K09125 yhhQ; queuosine precursor transporter
D EFER_1546 marC; putative wide-spectrum exporter K05595 marC; multiple antibiotic resistance protein
D EFER_0111 ftsW; integral membrane protein involved in stabilizing FstZ ring during cell division K03588 ftsW; cell division protein FtsW
D EFER_1254 yebN; conserved hypothetical protein; putative inner membrane protein K23242 mntP; manganese efflux pump family protein
D EFER_1911 efeU; ferrous iron permease K07243 FTR; high-affinity iron transporter
D EFER_1910 efeO; ferrous iron transport binding protein K07224 efeO; iron uptake system component EfeO
D EFER_1909 efeB; heme-binding periplasmic protein involved in iron transport; Tat-dependent exported K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D EFER_3073 yjiY; conserved hypothetical protein; putative inner membrane protein K23676 btsT; pyruvate/proton symporter
D EFER_1702 tonB; membrane spanning protein in TonB-ExbB-ExbD complex K03832 tonB; periplasmic protein TonB
D EFER_2363 pal; peptidoglycan-associated outer membrane lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D EFER_2365 TolA protein K03646 tolA; colicin import membrane protein
D EFER_2078 conserved hypothetical protein from phage K03646 tolA; colicin import membrane protein
D EFER_2364 tolB; periplasmic protein K03641 tolB; TolB protein
D EFER_3127 Putative carboxybiotin decarboxylase subunit of malonate decarboxylase K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D EFER_0028 oadB; Oxalacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D EFER_0029 oadA; Oxaloacetate decarboxylase alpha chain K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D EFER_0030 oadG; Oxaloacetate decarboxylase gamma chain K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D EFER_3128 Acetyl-S-acyl carrier protein: malonate acyl carrier protein-SH transferase K13929 mdcA; malonate decarboxylase alpha subunit [EC:2.3.1.187]
D EFER_3130 putative subunit of malonyl-S-acyl carrier protein: biotin carboxyltransferase K20510 madC; malonyl-S-ACP:biotin-protein carboxyltransferase subunit MadC [EC:2.1.3.10]
D EFER_3131 putative subunit of malonyl-S-acyl carrier protein: biotin carboxyltransferase K20511 madD; malonyl-S-ACP:biotin-protein carboxyltransferase subunit MadD [EC:2.1.3.10]
D EFER_3129 Malonate decarboxylase acyl carrier protein (Malonate decarboxylase delta subunit) K13931 mdcC; malonate decarboxylase delta subunit
D EFER_1736 narG; nitrate reductase 1, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D EFER_1735 narH; nitrate reductase 1, beta (Fe-S) subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D EFER_1733 narI; nitrate reductase 1, gamma (cytochrome b(NR)) subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D EFER_1489 fdnG; formate dehydrogenase-N, alpha subunit, nitrate-inducible K08348 fdnG; formate dehydrogenase-N, alpha subunit [EC:1.17.5.3]
D EFER_1491 fdnH; formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible K08349 fdnH; formate dehydrogenase-N, beta subunit
D EFER_1492 fdnI; formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible K08350 fdnI; formate dehydrogenase-N, gamma subunit
D EFER_4181 dmsA; anaerobic dimethyl sulfoxide reductase chain A precursor (DMSO reductase) K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D EFER_4182 putative anaerobic reductase chain B (DMSO reductase iron-sulfur subunit) K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D EFER_4183 putative anaerobic reductase, subunit C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D EFER_1192 torA; trimethylamine N-oxide (TMAO) reductase I, catalytic subunit K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D EFER_1191 torC; trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D EFER_1193 torD; chaperone involved in maturation of TorA subunit of trimethylamine N-oxide reductase system I K03533 torD; TorA specific chaperone
D EFER_3548 bisC; biotin sulfoxide reductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
D EFER_0386 emrA; multidrug efflux system K03543 emrA; membrane fusion protein, multidrug efflux system
D EFER_4289 yjcR; membrane fusion protein of efflux pump K15549 mdtN; membrane fusion protein, multidrug efflux system
D EFER_2536 cusB; copper/silver efflux system, membrane fusion protein K07798 cusB; membrane fusion protein, copper/silver efflux system
D EFER_3484 siiDB; HlyD family secretion type I protein K12542 lapC; membrane fusion protein, adhesin transport system
D EFER_0544 siiDA; RtxD/HlyD/CyaD protein of type I secretion system K12542 lapC; membrane fusion protein, adhesin transport system
D EFER_3038 mdtE; multidrug resistance efflux transporter K18898 mdtE; membrane fusion protein, multidrug efflux system
D EFER_2554 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D EFER_3244 acrE; cytoplasmic membrane lipoprotein K18141 acrE; membrane fusion protein, multidrug efflux system
D EFER_2347 putative outer membrane or exported K25859 acrZ; accessory protein, multidrug efflux pump
D EFER_2161 mdtA; multidrug efflux system, subunit A K07799 mdtA; membrane fusion protein, multidrug efflux system
D EFER_1026 macA; macrolide transporter subunit, membrane fusion protein (MFP) component K13888 macA; membrane fusion protein, macrolide-specific efflux system
D EFER_3219 aaeA; p-hydroxybenzoic acid efflux system component K15548 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA
D EFER_2144 wzc; protein-tyrosine kinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D EFER_2359 pnuC; nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter
D EFER_4144 putative transporter K03811 pnuC; nicotinamide mononucleotide transporter
D EFER_3376 feoA; ferrous iron transporter, protein A K04758 feoA; ferrous iron transport protein A
D EFER_3377 feoB; fused ferrous iron transporter, protein B: GTP-binding protein; membrane protein K04759 feoB; ferrous iron transport protein B
D EFER_3378 yhgG; putative DNA-binding transcriptional regulator K07490 feoC; ferrous iron transport protein C
D EFER_2646 sbmA; transporter involved in cell envelope modification K17938 sbmA; peptide/bleomycin uptake transporter
D EFER_3487 yhiO; putative universal stress (ethanol tolerance) protein B K06144 uspB; universal stress protein B
D EFER_4200 ecnA; entericidin A membrane lipoprotein, antidote entericidin B K16347 ecnA; entericidin A
D EFER_4201 ecnB; entericidin B membrane lipoprotein K16348 ecnB; entericidin B
D EFER_2286 ccmF; heme lyase, CcmF subunit K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D EFER_3033 yhiD; conserved hypothetical protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D EFER_1233 yebZ; putative inner membrane protein yebZ, putative copper ion transport K07245 pcoD; copper resistance protein D
D EFER_1232 conserved hypothetical protein, putative protein yobA precursor putative exported protein, putative copper resistance protein CopC K07156 copC; copper resistance protein C
D EFER_1804 mipA; scaffolding protein for murein synthesizing machinery K07274 mipA; MipA family protein
C 02044 Secretion system [BR:efe02044]
D EFER_2976 tolC; transport channel K12340 tolC; outer membrane protein
D EFER_0543 siiBA; type I secretion membrane protein, ATP binding protein, protein export K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D EFER_3483 siiBB; type I secretion membrane protein, ATP-binding protein, protein export K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D EFER_3484 siiDB; HlyD family secretion type I protein K12542 lapC; membrane fusion protein, adhesin transport system
D EFER_0544 siiDA; RtxD/HlyD/CyaD protein of type I secretion system K12542 lapC; membrane fusion protein, adhesin transport system
D EFER_3482 siiCB; outer membrane export protein K12543 lapE; outer membrane protein, adhesin transport system
D EFER_0541 siiCA; outer membrane transport protein, type I secretion K12543 lapE; outer membrane protein, adhesin transport system
D EFER_2914 yghF; putative secretion pathway protein, C-type protein K02452 gspC; general secretion pathway protein C
D EFER_2915 epsD; general secretion pathway protein D precursor K02453 gspD; general secretion pathway protein D
D EFER_2916 epsE; general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D EFER_2917 epsF; General secretion pathway protein F K02455 gspF; general secretion pathway protein F
D EFER_2918 putative general secretion pathway protein G precursor (epsG-like) K02456 gspG; general secretion pathway protein G
D EFER_2919 conserved hypothetical protein; putative exported protein K02457 gspH; general secretion pathway protein H
D EFER_2920 putative type II secretion protein (GspI-like) K02458 gspI; general secretion pathway protein I
D EFER_2921 conserved hypothetical protein; putative exported protein K02459 gspJ; general secretion pathway protein J
D EFER_2922 putative type II secretion protein (GspK-like) K02460 gspK; general secretion pathway protein K
D EFER_2923 yghE; putative secretion pathway protein, L-type protein K02461 gspL; general secretion pathway protein L
D EFER_2924 yghD; putative secretion pathway M-type protein, membrane anchored K02462 gspM; general secretion pathway protein M
D EFER_2912 pppA; bifunctional prepilin leader peptidase and methylase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D EFER_2889 yggR; transporter K02669 pilT; twitching motility protein PilT
D EFER_2759 ppdA; prepilin peptidase dependent protein A precursor K02679 ppdA; prepilin peptidase dependent protein A
D EFER_2758 ppdB; prepilin peptidase-dependent protein B K02680 ppdB; prepilin peptidase dependent protein B
D EFER_2756 Prepilin peptidase dependent protein C precursor K02681 ppdC; prepilin peptidase dependent protein C
D EFER_0128 ppdD; putative major pilin subunit K02682 ppdD; prepilin peptidase dependent protein D
D EFER_0127 hofB; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K02504 hofB; protein transport protein HofB
D EFER_0126 hofC; assembly protein in type IV pilin biogenesis, transmembrane protein K02505 hofC; protein transport protein HofC
D EFER_3361 yrfD; putative pilus assembly protein K12288 hofM; pilus assembly protein HofM
D EFER_3360 conserved hypothetical protein K12289 hofN; pilus assembly protein HofN
D EFER_3359 conserved hypothetical protein K12290 hofO; pilus assembly protein HofO
D EFER_3358 conserved hypothetical protein K12291 hofP; pilus assembly protein HofP
D EFER_3357 hofQ; fimbrial transporter K02507 hofQ; protein transport protein HofQ
D EFER_2891 yggT; conserved hypothetical protein; putative inner membrane protein K02221 yggT; YggT family protein
D EFER_2575 ybaV; conserved hypothetical protein K02237 comEA; competence protein ComEA
D EFER_1057 conserved hypothetical protein K02238 comEC; competence protein ComEC
D EFER_2751 fhiA; flagellar system protein K02400 flhA; flagellar biosynthesis protein FlhA
D EFER_1195 flhA; putative flagellar export pore protein K02400 flhA; flagellar biosynthesis protein FlhA
D EFER_1194 flhB; flagellar export pore protein K02401 flhB; flagellar biosynthesis protein FlhB
D EFER_1923 fliF; flagellar basal-body MS-ring and collar protein K02409 fliF; flagellar M-ring protein FliF
D EFER_1925 fliH; flagellar biosynthesis protein K02411 fliH; flagellar assembly protein FliH
D EFER_1926 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D EFER_1931 fliN; flagellar motor switching and energizing component K02417 fliN; flagellar motor switch protein FliN
D EFER_1932 fliO; Flagellar protein fliO K02418 fliO; flagellar protein FliO/FliZ
D EFER_1933 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D EFER_1934 fliQ; flagellar biosynthesis protein K02420 fliQ; flagellar biosynthesis protein FliQ
D EFER_1935 fliR; flagellar export pore protein K02421 fliR; flagellar biosynthesis protein FliR
D EFER_2828 dsbC; protein disulfide isomerase II K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D EFER_2876 putative beta-barrel outer membrane protein, similar to AidA-I adhesin-like protein K12678 aidA-I; autotransporter family porin
D EFER_1785 conserved hypothetical protein; putative exported protein K12678 aidA-I; autotransporter family porin
D EFER_0932 yfaL; adhesin K07279 yfaL; autotransporter family porin
D EFER_1964 IcmF-like protein K11891 impL; type VI secretion system protein ImpL
D EFER_1968 Putative membrane protein Aec26 K11892 impK; type VI secretion system protein ImpK
D EFER_1969 conserved hypothetical protein, Aec25 K11893 impJ; type VI secretion system protein ImpJ
D EFER_1972 conserved hypothetical protein, Aec22 K11895 impH; type VI secretion system protein ImpH
D EFER_1973 conserved hypothetical protein K11896 impG; type VI secretion system protein ImpG
D EFER_1975 conserved hypothetical protein K11900 impC; type VI secretion system protein ImpC
D EFER_1976 conserved hypothetical protein; putative exported protein K11901 impB; type VI secretion system protein ImpB
D EFER_1977 Conserved hypothetical protein Aec16 (Hcp-like) K11903 hcp; type VI secretion system secreted protein Hcp
D EFER_1978 conserved hypothetical protein, putative VgrG/E protein associated with Rhs elements K11904 vgrG; type VI secretion system secreted protein VgrG
D EFER_3027 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D EFER_1974 conserved hypothetical protein K11905 K11905; type VI secretion system protein
D EFER_1970 conserved hypothetical protein, putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D EFER_1967 putative ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity K11907 vasG; type VI secretion system protein VasG
D EFER_1965 Conserved hypothetical protein, Putative Aec29 K11910 vasJ; type VI secretion system protein VasJ
D EFER_1963 conserved hypothetical protein K11911 vasL; type VI secretion system protein VasL
D EFER_1971 conserved hypothetical protein, Aec23 K11894 impI; type VI secretion system protein ImpI
D EFER_1966 conserved hypothetical protein Aec28 K11909 vasI; type VI secretion system protein VasI
D EFER_1137 conserved hypothetical protein K07346 fimC; fimbrial chaperone protein
D EFER_3403 putative fimbria chaperone protein precursor K07346 fimC; fimbrial chaperone protein
D EFER_3399 putative periplasmic pilin chaperone K07346 fimC; fimbrial chaperone protein
D EFER_3402 putative outer membrane export usher protein aufC K07347 fimD; outer membrane usher protein
D EFER_1138 conserved hypothetical protein K07347 fimD; outer membrane usher protein
D EFER_0161 htrE; outer membrane usher protein K07347 fimD; outer membrane usher protein
D EFER_2194 putative Paral outer membrane protein, putative exported protein K07347 fimD; outer membrane usher protein
D EFER_1135 putative Type I pilus protein CsuA/B K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D EFER_1140 conserved hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D EFER_1136 conserved hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D EFER_0826 putative outer membrane usher protein yfcU precursor K12518 papC; outer membrane usher protein PapC
D EFER_0827 yfcS; putative periplasmic pilus exported chaperone K12519 papD; chaperone protein PapD
D EFER_1887 csgA; cryptic curlin major subunit K04334 csgA; major curlin subunit
D EFER_1888 csgB; curlin nucleator protein, minor subunit in curli complex K04335 csgB; minor curlin subunit
D EFER_1886 csgC; putative curli production protein csgC precursor K04336 csgC; curli production protein
D EFER_1890 csgE; curli production assembly/transport component, 2nd curli operon (modular protein) K04337 csgE; curli production assembly/transport component CsgE
D EFER_1891 csgF; putative transport/assembly protein for curli synthesis K04338 csgF; curli production assembly/transport component CsgF
D EFER_1893 csgG; putative outer membrane lipoprotein involved in curli production assembly/transport K06214 csgG; curli production assembly/transport component CsgG
D EFER_0120 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D EFER_3603 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D EFER_2617 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D EFER_3773 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D EFER_2616 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D EFER_3152 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D EFER_0119 secM; regulator of secA translation K13301 secM; secretion monitor
D EFER_3283 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D EFER_0462 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D EFER_3437 ftsY; fused Signal Recognition Particle (SRP) receptor: membrane binding protein; conserved hypothetical protein K03110 ftsY; fused signal recognition particle receptor
D EFER_2618 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D EFER_4002 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D EFER_3644 tatA; TatABCE protein translocation system subunit K03116 tatA; sec-independent protein translocase protein TatA
D EFER_3643 tatB; TatABCE protein translocation system subunit K03117 tatB; sec-independent protein translocase protein TatB
D EFER_3642 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC
D EFER_2477 tatE; TatABCE protein translocation system subunit K03425 tatE; sec-independent protein translocase protein TatE
C 02042 Bacterial toxins [BR:efe02042]
D EFER_4277 ytfL; conserved hypothetical protein; putative inner membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D EFER_0460 yfjD; conserved hypothetical protein; putative inner membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D EFER_2835 yqfA; putative hemolysin, inner membrane subunit K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:efe02022]
D EFER_2626 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D EFER_2627 phoB; DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D EFER_1801 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D EFER_1800 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D EFER_3372 envZ; sensory histidine kinase in two-component regulatory system with OmpR K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D EFER_3373 ompR; DNA-binding response regulator in two-component regulatory system with EnvZ K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D EFER_1428 rstB; sensory histidine kinase in two-component regulatory system with RstA K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D EFER_1429 rstA; DNA-binding response regulator in two-component regulatory system with RstB K07661 rstA; two-component system, OmpR family, response regulator RstA
D EFER_3861 cpxA; sensory histidine kinase in two-component regulatory system with CpxR K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D EFER_3860 cpxR; DNA-binding response regulator in two-component regulatory system with CpxA K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D EFER_4498 creC; sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulon K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D EFER_4497 creB; DNA-binding response regulator in two-component regulatory system with CreC K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D EFER_2165 baeS; sensory histidine kinase in two-component regulatory system with BaeR K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D EFER_2166 baeR; DNA-binding response regulator in two-component regulatory system with BaeS K07664 baeR; two-component system, OmpR family, response regulator BaeR
D EFER_4171 basS; sensory histidine kinase in two-component regulatory system with BasR K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D EFER_4172 basR; DNA-binding response regulator in two-component regulatory system with BasS K07771 basR; two-component system, OmpR family, response regulator BasR
D EFER_2541 cusS; sensory histidine kinase in two-component regulatory system with CusR, senses copper ions K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D EFER_2540 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D EFER_2968 qseC; Sensor protein qseC sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D EFER_2967 qseB; DNA-binding response regulator in two-component regulatory system with QseC K07666 qseB; two-component system, OmpR family, response regulator QseB
D EFER_2415 kdpD; fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein; sensory histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D EFER_2416 kdpE; DNA-binding response regulator in two-component regulatory system with KdpD K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D EFER_1188 torS; hybrid sensory histidine kinase in two-component regulatory system with TorR K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D EFER_1190 torR; DNA-binding response regulator in two-component regulatory system with TorS K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR
D EFER_3187 arcB; hybrid sensory histidine kinase in two-component regulatory system with ArcA K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D EFER_4500 arcA; DNA-binding response regulator in two-component regulatory system with ArcB or CpxA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D EFER_1511 Hypothetical protein, putative transcriptional regulatory protein K02483 K02483; two-component system, OmpR family, response regulator
D EFER_1738 narX; sensory histidine kinase in two-component regulatory system with NarL K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D EFER_1739 narL; DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D EFER_0709 narQ; sensory histidine kinase in two-component regulatory system with NarP (NarL) K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D EFER_2283 narP; DNA-binding response regulator in two-component regulatory system with NarQ or NarX K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D EFER_3965 uhpB; sensory histidine kinase in two-component regulatory sytem with UhpA K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D EFER_3966 uhpA; DNA-binding response regulator in two-component regulatory system wtih UhpB K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D EFER_0942 rcsC; hybrid sensory kinase in two-component regulatory system with RcsB and YojN K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D EFER_0944 rcsD; phosphotransfer intermediate protein in two-component regulatory system with RcsBC K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D EFER_0943 rcsB; DNA-binding response regulator in two-component regulatory system with RcsC and YojN K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D EFER_0278 barA; hybrid sensory histidine kinase, in two-component regulatory system with UvrY K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D EFER_1180 uvrY; DNA-binding response regulator in two-component regulatory system with BarA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D EFER_0027 citA; sensory histidine kinase in two-component regulatory system with citB K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3]
D EFER_0026 citB; DNA-binding response regulator in two-component regulatory system with citA K07702 dpiA; two-component system, CitB family, response regulator CitB
D EFER_4179 dcuS; sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3]
D EFER_4178 dcuR; DNA-binding response regulator in two-component regulatory system with DcuS K07703 dcuR; two-component system, CitB family, response regulator DcuR
D EFER_0788 ypdA; putative sensory kinase in two-component system with YpdB K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D EFER_2212 yehU; sensory kinase in two-component system with YehT K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D EFER_2211 yehT; response regulator in two-component system with YehU K02477 K02477; two-component system, LytTR family, response regulator
D EFER_0787 ypdB; putative response regulator in two-component system with YpdA K02477 K02477; two-component system, LytTR family, response regulator
D EFER_3904 glnL; sensory histidine kinase in two-component regulatory system with GlnG K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D EFER_3905 glnG; fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator; sigma54 interaction protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D EFER_3751 zraS; sensory histidine kinase in two-component regulatory system with ZraR K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D EFER_3750 zraR; fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator; sigma54 interaction protein K07713 zraR; two-component system, NtrC family, response regulator HydG
D EFER_0941 atoS; sensory histidine kinase in two-component regulatory system with AtoC K07710 atoS; two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3]
D EFER_3536 putative transcriptional regulator K07714 atoC; two-component system, NtrC family, response regulator AtoC
D EFER_0519 yfhK; putative sensory kinase in two-component system K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D EFER_0521 yfhA; putative DNA-binding response regulator in two-component system K07715 glrR; two-component system, NtrC family, response regulator GlrR
D EFER_4156 putative C4-dicarboxylate transport sensor protein (dctB-like) K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D EFER_4155 dctD; C4-dicarboxylate transport transcriptional regulatory protein K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D EFER_1133 cheA; fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase; signal sensing protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D EFER_1144 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D EFER_1143 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D EFER_0899 putative chemotaxis protein (cheV-like) K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D EFER_1720 rssB; response regulator of RpoS K02485 rssB; two-component system, response regulator
C 02035 Bacterial motility proteins [BR:efe02035]
D EFER_1133 cheA; fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase; signal sensing protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D EFER_1134 cheW; purine-binding chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D EFER_1142 cheR; chemotaxis regulator, protein-glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D EFER_1143 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D EFER_1144 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D EFER_1145 cheZ; chemotaxis regulator, protein phosphatase for CheY K03414 cheZ; chemotaxis protein CheZ
D EFER_0899 putative chemotaxis protein (cheV-like) K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D EFER_3055 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D EFER_1141 tar; methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D EFER_3024 aer; fused signal transducer for aerotaxis sensory component; methyl accepting chemotaxis component K03776 aer; aerotaxis receptor
D EFER_1925 fliH; flagellar biosynthesis protein K02411 fliH; flagellar assembly protein FliH
D EFER_1926 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D EFER_1927 fliJ; flagellar protein K02413 fliJ; flagellar protein FliJ
D EFER_1932 fliO; Flagellar protein fliO K02418 fliO; flagellar protein FliO/FliZ
D EFER_1933 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D EFER_1934 fliQ; flagellar biosynthesis protein K02420 fliQ; flagellar biosynthesis protein FliQ
D EFER_1935 fliR; flagellar export pore protein K02421 fliR; flagellar biosynthesis protein FliR
D EFER_2751 fhiA; flagellar system protein K02400 flhA; flagellar biosynthesis protein FlhA
D EFER_1195 flhA; putative flagellar export pore protein K02400 flhA; flagellar biosynthesis protein FlhA
D EFER_1194 flhB; flagellar export pore protein K02401 flhB; flagellar biosynthesis protein FlhB
D EFER_1196 flhE; conserved hypothetical protein K03516 flhE; flagellar protein FlhE
D EFER_1924 fliG; flagellar motor switching and energizing component K02410 fliG; flagellar motor switch protein FliG
D EFER_1930 fliM; flagellar motor switching and energizing component K02416 fliM; flagellar motor switch protein FliM
D EFER_1931 fliN; flagellar motor switching and energizing component K02417 fliN; flagellar motor switch protein FliN
D EFER_1923 fliF; flagellar basal-body MS-ring and collar protein K02409 fliF; flagellar M-ring protein FliF
D EFER_1848 flgI; flagellar basal body P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D EFER_1857 flgA; Flagella basal body P-ring formation protein flgA precursor K02386 flgA; flagellar basal body P-ring formation protein FlgA
D EFER_1849 flgH; flagellar protein of basal-body outer-membrane L ring K02393 flgH; flagellar L-ring protein FlgH
D EFER_1929 fliL; Flagellar fliL protein K02415 fliL; flagellar protein FliL
D EFER_1921 fliE; flagellar basal-body component K02408 fliE; flagellar hook-basal body complex protein FliE
D EFER_1928 fliK; Flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D EFER_1856 flgB; flagellar component of cell-proximal portion of basal-body rod K02387 flgB; flagellar basal-body rod protein FlgB
D EFER_1855 flgC; flagellar component of cell-proximal portion of basal-body rod K02388 flgC; flagellar basal-body rod protein FlgC
D EFER_1854 flgD; flagellar hook assembly protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D EFER_1852 flgF; flagellar component of cell-proximal portion of basal-body rod K02391 flgF; flagellar basal-body rod protein FlgF
D EFER_1850 flgG; flagellar component of cell-distal portion of basal-body rod K02392 flgG; flagellar basal-body rod protein FlgG
D EFER_1847 flgJ; muramidase K02395 flgJ; peptidoglycan hydrolase FlgJ
D EFER_1853 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D EFER_1846 flgK; flagellar hook-filament junction protein 1 K02396 flgK; flagellar hook-associated protein 1
D EFER_1845 flgL; flagellar hook-filament junction protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D EFER_1859 flgN; Flagella synthesis protein flgN K02399 flgN; flagellar biosynthesis protein FlgN
D EFER_1170 fliC; Flagellin (Phase-1-C flagellin) K02406 fliC; flagellin
D EFER_1169 fliD; flagellar filament capping protein K02407 fliD; flagellar hook-associated protein 2
D EFER_1168 fliS; flagellar protein potentiates polymerization K02422 fliS; flagellar secretion chaperone FliS
D EFER_1167 fliT; putative chaperone for FliD K02423 fliT; flagellar protein FliT
D EFER_1129 flhD; DNA-binding transcriptional dual regulator with FlhC (modular protein) K02403 flhD; flagellar transcriptional activator FlhD
D EFER_1130 flhC; DNA-binding transcriptional dual regulator with FlhD K02402 flhC; flagellar transcriptional activator FlhC
D EFER_1171 fliA; RNA polymerase, sigma 28 (sigma F) factor K02405 fliA; RNA polymerase sigma factor FliA
D EFER_1131 motA; proton conductor component of flagella motor K02556 motA; chemotaxis protein MotA
D EFER_2750 mbhA; flagellar system protein K02557 motB; chemotaxis protein MotB
D EFER_1132 motB; protein that enables flagellar motor rotation K02557 motB; chemotaxis protein MotB
D EFER_1174 fliY; cystine transporter subunit; periplasmic-binding component of ABC superfamily K02424 tcyA; L-cystine transport system substrate-binding protein
D EFER_1173 fliZ; putative regulator of FliA activity K02425 fliZ; regulator of sigma S factor FliZ
D EFER_1858 flgM; Negative regulator of flagellin synthesis (Anti-sigma-28 factor) K02398 flgM; negative regulator of flagellin synthesis FlgM
D EFER_2889 yggR; transporter K02669 pilT; twitching motility protein PilT
D EFER_2912 pppA; bifunctional prepilin leader peptidase and methylase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D EFER_1137 conserved hypothetical protein K07346 fimC; fimbrial chaperone protein
D EFER_3403 putative fimbria chaperone protein precursor K07346 fimC; fimbrial chaperone protein
D EFER_3399 putative periplasmic pilin chaperone K07346 fimC; fimbrial chaperone protein
D EFER_3402 putative outer membrane export usher protein aufC K07347 fimD; outer membrane usher protein
D EFER_1138 conserved hypothetical protein K07347 fimD; outer membrane usher protein
D EFER_0161 htrE; outer membrane usher protein K07347 fimD; outer membrane usher protein
D EFER_2194 putative Paral outer membrane protein, putative exported protein K07347 fimD; outer membrane usher protein
D EFER_3404 aufA; Auf fimbriae major fimbrial subunit AufA K07352 sfmA; type 1 fimbrial protein
D EFER_1135 putative Type I pilus protein CsuA/B K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D EFER_1140 conserved hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D EFER_1136 conserved hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:efe04812]
D EFER_3228 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D EFER_0117 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D EFER_0116 ftsA; ATP-binding cell division protein involved in recruitment of FtsK to Z ring K03590 ftsA; cell division protein FtsA
D EFER_1776 minC; cell division inhibitor K03610 minC; septum site-determining protein MinC
D EFER_1777 minD; membrane ATPase of the MinC-MinD-MinE system K03609 minD; septum site-determining protein MinD
D EFER_1778 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor
D EFER_p0004 parA; Plasmid partition protein A K03496 parA; chromosome partitioning protein
D EFER_p0005 parB; Plasmid Partition par B protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:efe04147]
D EFER_2544 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D EFER_3880 htpG; Hsp90xo molecular chaperone K04079 HSP90A; molecular chaperone HtpG
D EFER_0285 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D EFER_1585 gapC; glyceraldehyde-3-phosphate dehydrogenase C K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D EFER_1293 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D EFER_2858 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D EFER_1376 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D EFER_1218 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D EFER_3336 ppiA; peptidyl-prolyl cis-trans isomerase A (rotamase A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D EFER_4195 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D EFER_0010 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D EFER_4117 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D EFER_0667 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D EFER_3309 tufA; protein chain elongation factor EF-Tu (duplicate of tufB) K02358 tuf; elongation factor Tu
D EFER_3774 tufB; protein chain elongation factor EF-Tu (duplicate of tufA) K02358 tuf; elongation factor Tu
D EFER_1825 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D EFER_4154 Putative malate/L-lactate dehydrogenases K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D EFER_0765 yfeH; putative sodium/bile acid symporter family (mazG-like) K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D EFER_1275 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D EFER_0935 atoB; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_2775 yqeF; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D EFER_0523 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D EFER_2548 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D EFER_3803 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D EFER_3150 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D EFER_4310 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D EFER_2352 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D EFER_3409 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D EFER_3847 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D EFER_2517 Glycerol kinase 2 (ATP:glycerol 3-phosphotransferase 2) (Glycerokinase 2) (GK 2) K00864 glpK; glycerol kinase [EC:2.7.1.30]
D EFER_3903 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D EFER_2650 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D EFER_2640 phoA; bacterial alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D EFER_2850 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D EFER_3748 purH; fused IMP cyclohydrolase; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D EFER_4150 putative dihydrolipoyl dehydrogenase, E3 component (lpd-like) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_0137 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D EFER_0050 fixB; putative electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like K03522 fixB; electron transfer flavoprotein alpha subunit
D EFER_1221 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D EFER_0431 putative triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D EFER_3854 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D EFER_2354 gpmA; phosphoglyceromutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D EFER_4203 blc; outer membrane lipoprotein (lipocalin) K03098 APOD; apolipoprotein D and lipocalin family protein
D EFER_2705 blc; Outer membrane lipoprotein blc precursor (LIPOCALIN) from bacteriophage origin K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:efe02048]
D EFER_0308 ygbT; conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D EFER_0309 ygbF; conserved hypothetical protein K09951 cas2; CRISPR-associated protein Cas2
D EFER_0302 ygcB; conserved hypothetical protein; putative member of DEAD box family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D EFER_0303 ygcL; conserved hypothetical protein K19123 casA; CRISPR system Cascade subunit CasA
D EFER_0304 ygcK; conserved hypothetical protein K19046 casB; CRISPR system Cascade subunit CasB
D EFER_0305 ygcJ; conserved hypothetical protein K19124 casC; CRISPR system Cascade subunit CasC
D EFER_0306 ygcI; conserved hypothetical protein K19125 casD; CRISPR system Cascade subunit CasD
D EFER_0307 ygcH; conserved hypothetical protein K19126 casE; CRISPR system Cascade subunit CasE
D EFER_3079 hsdR; endonuclease R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D EFER_3081 Specificity determinant for hsdM and hsdR (modular protein) K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D EFER_3101 putative restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D EFER_3080 hsdM; DNA methylase M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D EFER_3102 putative type I restriction-modification system methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D EFER_3353 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D EFER_3241 yhdJ; methyltransferase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D EFER_4070 DNA modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D EFER_0600 putative endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D EFER_3083 mcrB; 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D EFER_3105 putative 5-methylcytosine-specific restriction enzyme with GTPase activity K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D EFER_3104 putative 5-methylcytosine restriction system component K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D EFER_3084 mcrC; 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D EFER_0012 mokC; regulatory protein for HokC, overlaps CDS of hokC K18919 hokC_D; protein HokC/D
D EFER_2525 putative small toxic membrane polypeptide, Putative HokE-like protein (partial) K18922 hokE; protein HokE
D EFER_misc_RNA_2 sokC; SokC K18871 sokC; sRNA antisense regulator of MokC and HokC protein
D EFER_3082 yjiW; conserved hypothetical protein K19048 symE; toxic protein SymE
D EFER_misc_RNA_53 ryjC; RyjC K18524 symR; sRNA antisense regulator of SymE protein
D EFER_3527 Small toxic polypeptide ldrD (modular protein) K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D
D EFER_3529 ldrD; toxic polypeptide, small K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D
D EFER_3531 ldrD; toxic polypeptide, small K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D
D EFER_misc_RNA_58 rdlD; RdlD K18863 rdlA_B_C_D; sRNA antisense regulator of LdrA/B/C/D protein
D EFER_misc_RNA_64 istR; IstR K18526 istR; sRNA antisense regulator of TisB protein
D EFER_misc_RNA_38 ryeC; RyeC K18865 sibB; sRNA antisense regulator of IbsB protein
D EFER_misc_RNA_39 ryeD; RyeD K18865 sibB; sRNA antisense regulator of IbsB protein
D EFER_misc_RNA_48 rygD; RygD K18867 sibC; sRNA antisense regulator of IbsC protein
D EFER_misc_RNA_49 rygC; RygC K18867 sibC; sRNA antisense regulator of IbsC protein
D EFER_misc_RNA_50 rygD; RygD K18868 sibD; sRNA antisense regulator of IbsD protein
D EFER_misc_RNA_12 ryfC; RyfC K18872 ohsC; sRNA antisense regulator of ShoB protein
D EFER_0282 chpA; toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D EFER_0281 chpR; antitoxin of the ChpA-ChpR toxin-antitoxin system K07172 mazE; antitoxin MazE
D EFER_4363 yhaV; conserved hypothetical protein K19155 yhaV; toxin YhaV [EC:3.1.-.-]
D EFER_4364 sohA; putative regulator K19156 prlF; antitoxin PrlF
D EFER_4317 RelE protein; putative cytotoxic translational repressor of toxin-antitoxin stability system K06218 relE; mRNA interferase RelE/StbE
D EFER_4316 Antitoxin RelB K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D EFER_2100 yoeB; toxin of the YoeB-YefM toxin-antitoxin system K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D EFER_2101 yefM; antitoxin of the YoeB-YefM toxin-antitoxin system K19159 yefM; antitoxin YefM
D EFER_2747 yafO; putative toxin of the YafO-YafN toxin-antitoxin system K19160 yafO; mRNA interferase YafO [EC:3.1.-.-]
D EFER_2748 yafN; putative antitoxin of the YafO-YafN toxin-antitoxin system K19161 yafN; antitoxin YafN
D EFER_2557 hha; modulator of gene expression, with H-NS K05839 hha; haemolysin expression modulating protein
D EFER_2556 ybaJ; conserved hypothetical protein K19162 tomB; hha toxicity modulator TomB
D EFER_1656 pspC; DNA-binding transcriptional activator K03973 pspC; phage shock protein C
D EFER_1657 pspB; DNA-binding transcriptional regulator of psp operon K03970 pspB; phage shock protein B
D EFER_0057 putative antitoxin of gyrase inhibiting toxin-antitoxin system K19164 ccdA; antitoxin CcdA
D EFER_2170 conserved hypothetical protein, putative plasmid stabilisation system protein K19092 parE1_3_4; toxin ParE1/3/4
D EFER_2169 conserved hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4
D EFER_1494 conserved hypothetical protein, putative plasmid maintenance system killer protein K07334 higB-1; toxin HigB-1
D EFER_0537 putative RelE/ParE family protein, cytotoxic translational repressor of toxin-antitoxin stability system K07334 higB-1; toxin HigB-1
D EFER_0538 ybaQ; putative DNA-binding transcriptional regulator K21498 higA-1; antitoxin HigA-1
D EFER_p0053 conserved hypothetical protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D EFER_p0054 Virulence-associated protein vagC K18829 mvpT; antitoxin VapB
D EFER_4114 putative zeta toxin; poison-antidote element K16214 pezT; UDP-N-acetylglucosamine kinase [EC:2.7.1.176]
D EFER_4333 yjgK; conserved hypothetical protein K19334 tabA; biofilm protein TabA
D EFER_2302 ybiM; conserved hypothetical protein K13650 mcbA; MqsR-controlled colanic acid and biofilm protein A
D EFER_1869 bssS; biofilm regulator K12148 bssS; biofilm regulator BssS
D EFER_0977 bssR; biofilm regulator K19688 bssR; biofilm regulator BssR
D EFER_0117 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D EFER_3228 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D EFER_2965 parC; DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D EFER_2971 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D EFER_0770 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D EFER_2831 ygfX; conserved hypothetical protein K19168 cptA; toxin CptA
D EFER_2832 ygfY; conserved hypothetical protein K09159 cptB; antitoxin CptB
D EFER_0642 iscS; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:efe04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:efe04090]
C 01504 Antimicrobial resistance genes [BR:efe01504]
D EFER_p0036 bla; Beta-lactamase TEM precursor (Penicillinase) K18698 blaTEM; beta-lactamase class A TEM [EC:3.5.2.6]
D EFER_1643 bla; Beta-lactamase TEM precursor (penicillinase) K18698 blaTEM; beta-lactamase class A TEM [EC:3.5.2.6]
D EFER_p0048 Streptomycin 3''-kinase (Streptomycin 3''-phosphotransferase) (Streptomycin 6-phosphotransferase) (Streptomycin 6-kinase) K10673 strA; streptomycin 3"-kinase [EC:2.7.1.87]
D EFER_p0049 Streptomycin 3''-kinase K04343 strB; streptomycin 6-kinase [EC:2.7.1.72]
D EFER_p0040 tetA; Tetracycline resistance protein, class B (TETA(B)) (Metal-tetracycline/H(+) antiporter) K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D EFER_0983 cmr; multidrug efflux system protein K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D EFER_2123 Putative chloramphenicol acetyltransferase (fragment) K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28]
D EFER_2541 cusS; sensory histidine kinase in two-component regulatory system with CusR, senses copper ions K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D EFER_2540 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D EFER_1801 phoQ; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D EFER_1800 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D EFER_2554 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D EFER_2555 acrB; multidrug efflux system protein K18138 acrB; multidrug efflux pump
D EFER_0545 cueR; DNA-binding transcriptional activator of copper-responsive regulon genes K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D EFER_3243 putative acrEF/envCD operon repressor K18140 envR; TetR/AcrR family transcriptional regulator, acrEF/envCD operon repressor
D EFER_3244 acrE; cytoplasmic membrane lipoprotein K18141 acrE; membrane fusion protein, multidrug efflux system
D EFER_3245 acrF; multidrug efflux system protein K18142 acrF; multidrug efflux pump
D EFER_2976 tolC; transport channel K12340 tolC; outer membrane protein
D EFER_3038 mdtE; multidrug resistance efflux transporter K18898 mdtE; membrane fusion protein, multidrug efflux system
D EFER_3039 mdtF; multidrug transporter, RpoS-dependent K18899 mdtF; multidrug efflux pump
D EFER_1544 marA; DNA-binding transcriptional dual activator of multiple antibiotic resistance K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator
D EFER_misc_RNA_21 micF; MicF K18513 micF; small regulatory RNA MicF
D EFER_1073 ompF; outer membrane porin 1a (Ia;b;F) K09476 ompF; outer membrane pore protein F
D EFER_1948 Outer membrane protein N precursor (porin) K09476 ompF; outer membrane pore protein F
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:efe00537]
D EFER_2640 phoA; bacterial alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D EFER_1759 treA; periplasmic trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
D EFER_3502 treF; cytoplasmic trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins [BR:efe03200]
D EFER_4460 Minor tail protein L K26974 L; Enterobacteria phage tail tip protein L
D EFER_4461 putative tail fiber component K of prophage K26975 K; Enterobacteria phage tail tip assembly protein K
D EFER_4462 Tail assembly protein I from putative prophage K26976 I; Enterobacteria phage tail tip assembly protein I
D EFER_2676 tfaQ; putative tail fibre chaperone; Qin prophage K26980 tfa; Enterobacteria phage tail fiber assembly protein
D EFER_4467 tfaQ; putative tail fibre chaperone; Qin prophage K26980 tfa; Enterobacteria phage tail fiber assembly protein
D EFER_2700 rzpD; putative murein endopeptidase; DLP12 prophage K14744 rzpD; prophage endopeptidase [EC:3.4.-.-]
D EFER_2051 Rz; Endopeptidase from phage origin (Lysis protein Rz) K14744 rzpD; prophage endopeptidase [EC:3.4.-.-]
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:efe03100]
D EFER_tRNA13 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D EFER_tRNA14 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D EFER_tRNA2 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D EFER_tRNA57 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D EFER_tRNA60 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D EFER_tRNA12 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D EFER_tRNA52 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D EFER_tRNA80 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D EFER_tRNA6 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D EFER_tRNA8 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D EFER_tRNA9 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D EFER_tRNA7 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D EFER_tRNA22 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D EFER_tRNA23 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D EFER_tRNA24 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D EFER_tRNA74 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D EFER_tRNA3 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D EFER_tRNA50 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D EFER_tRNA4 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D EFER_tRNA17 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D EFER_tRNA31 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D EFER_tRNA32 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D EFER_tRNA28 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D EFER_tRNA29 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D EFER_tRNA11 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D EFER_tRNA49 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D EFER_tRNA44 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D EFER_tRNA36 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D EFER_tRNA47 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D EFER_tRNA65 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D EFER_tRNA16 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D EFER_tRNA37 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D EFER_tRNA38 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D EFER_tRNA39 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D EFER_tRNA53 tRNA-His K14226 tRNA-His; tRNA His
D EFER_tRNA1 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D EFER_tRNA56 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D EFER_tRNA59 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D EFER_tRNA64 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA62 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA27 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA40 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA42 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA41 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA54 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA18 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D EFER_tRNA67 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D EFER_tRNA71 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D EFER_tRNA69 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D EFER_tRNA72 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D EFER_tRNA73 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D EFER_tRNA84 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D EFER_tRNA26 tRNA-Met K14230 tRNA-Met; tRNA Met
D EFER_tRNA30 tRNA-Met K14230 tRNA-Met; tRNA Met
D EFER_tRNA34 tRNA-Met K14230 tRNA-Met; tRNA Met
D EFER_tRNA63 tRNA-Met K14230 tRNA-Met; tRNA Met
D EFER_tRNA85 tRNA-Met K14230 tRNA-Met; tRNA Met
D EFER_tRNA86 tRNA-Met K14230 tRNA-Met; tRNA Met
D EFER_tRNA87 tRNA-Met K14230 tRNA-Met; tRNA Met
D EFER_tRNA33 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D EFER_tRNA43 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D EFER_tRNA58 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D EFER_tRNA25 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D EFER_tRNA55 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D EFER_tRNA5 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D EFER_tRNA75 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D EFER_tRNA15 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D EFER_tRNA21 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D EFER_tRNA79 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D EFER_tRNA48 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D EFER_tRNA61 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D EFER_tRNA45 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D EFER_tRNA66 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D EFER_tRNA51 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D EFER_tRNA19 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D EFER_tRNA20 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D EFER_tRNA46 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D EFER_tRNA68 tRNA-Val K14237 tRNA-Val; tRNA Val
D EFER_tRNA83 tRNA-Val K14237 tRNA-Val; tRNA Val
D EFER_tRNA81 tRNA-Val K14237 tRNA-Val; tRNA Val
D EFER_tRNA70 tRNA-Val K14237 tRNA-Val; tRNA Val
D EFER_tRNA82 tRNA-Val K14237 tRNA-Val; tRNA Val
D EFER_tRNA77 tRNA-Val K14237 tRNA-Val; tRNA Val
D EFER_tRNA78 tRNA-Val K14237 tRNA-Val; tRNA Val
D EFER_tRNA76 tRNA-OTHER K14237 tRNA-Val; tRNA Val
D EFER_tRNA35 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D EFER_16S_6 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_5 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_1 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_7 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_3 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_2 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_16S_4 ribosomal RNA 16S K01977 16SrRNA; 16S ribosomal RNA
D EFER_23S_1 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_7 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_4 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_2 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_3 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_5 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_23S_6 ribosomal RNA 23S K01980 23SrRNA; 23S ribosomal RNA
D EFER_5S_1 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_4 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_3 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_8 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_6 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_7 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_2 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_5S_5 ribosomal RNA 5S K01985 5SrRNA; 5S ribosomal RNA
D EFER_misc_RNA_43 ffs; 4.5S K01983 ffs; SRP RNA
D EFER_misc_RNA_66 rnpB; M1 K01978 rnpB; M1 RNA
D EFER_misc_RNA_2 sokC; SokC K18871 sokC; sRNA antisense regulator of MokC and HokC protein
D EFER_misc_RNA_58 rdlD; RdlD K18863 rdlA_B_C_D; sRNA antisense regulator of LdrA/B/C/D protein
D EFER_misc_RNA_64 istR; IstR K18526 istR; sRNA antisense regulator of TisB protein
D EFER_misc_RNA_38 ryeC; RyeC K18865 sibB; sRNA antisense regulator of IbsB protein
D EFER_misc_RNA_39 ryeD; RyeD K18865 sibB; sRNA antisense regulator of IbsB protein
D EFER_misc_RNA_48 rygD; RygD K18867 sibC; sRNA antisense regulator of IbsC protein
D EFER_misc_RNA_49 rygC; RygC K18867 sibC; sRNA antisense regulator of IbsC protein
D EFER_misc_RNA_50 rygD; RygD K18868 sibD; sRNA antisense regulator of IbsD protein
D EFER_misc_RNA_12 ryfC; RyfC K18872 ohsC; sRNA antisense regulator of ShoB protein
D EFER_misc_RNA_53 ryjC; RyjC K18524 symR; sRNA antisense regulator of SymE protein
D EFER_misc_RNA_10 ssrA; TmRNA K15035 ssrA; transfer-messenger RNA
D EFER_misc_RNA_35 dsrA; DsrA K18502 dsrA; small regulatory RNA DsrA
D EFER_misc_RNA_16 sroB; SroB K18503 chiX; small regulatory RNA ChiX
D EFER_misc_RNA_55 ryhA; RyhA K18504 arcZ; small regulatory RNA ArcZ
D EFER_misc_RNA_14 tke1; tke1 K15841 glmY; small regulatory RNA GlmY
D EFER_misc_RNA_62 ryiA; RyiA K18505 glmZ; small regulatory RNA GlmZ
D EFER_misc_RNA_3 sgrS; SgrS K18506 sgrS; small regulatory RNA SgrS
D EFER_misc_RNA_57 ryhB; RyhB K18507 ryhB; small regulatory RNA RyhB
D EFER_misc_RNA_23 rybB; RybB K18508 rybB; small regulatory RNA RybB
D EFER_misc_RNA_28 rydC; RydC K18509 rydC; small regulatory RNA RydC
D EFER_misc_RNA_9 micA; MicA K18511 micA; small regulatory RNA MicA
D EFER_misc_RNA_29 micC; MicC K18512 micC; small regulatory RNA MicC
D EFER_misc_RNA_21 micF; MicF K18513 micF; small regulatory RNA MicF
D EFER_misc_RNA_7 csrB; CsrB K18515 csrB; small regulatory RNA CsrB
D EFER_misc_RNA_60 csrC; CsrC K18516 csrC; small regulatory RNA CsrC
D EFER_misc_RNA_27 rprA; RprA K18518 rprA; small regulatory RNA RprA
D EFER_misc_RNA_40 ryeE; RyeE K18520 cyaR; small regulatory RNA CyaR
D EFER_misc_RNA_6 gcvB; GcvB K18521 gcvB; small regulatory RNA GcvB
D EFER_misc_RNA_45 omrA; OmrA K18522 omrA; small regulatory RNA OmrA
D EFER_misc_RNA_46 omrB; OmrB K18523 omrB; small regulatory RNA OmrB
D EFER_misc_RNA_52 gadY; GadY K18525 gadY; small regulatory RNA GadY
D EFER_misc_RNA_61 spf; Spot42 K18527 spf; small regulatory RNA Spot 42
D EFER_misc_RNA_63 oxyS; OxyS K18528 oxyS; small regulatory RNA OxyS
D EFER_misc_RNA_31 isrA; IsrA K21091 mcaS; small regulatory RNA McaS
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D EFER_2672 putative aldo-keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D EFER_2952 dkgA; 2,5-diketo-D-gluconate reductase A K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D EFER_0236 dkgB; 2,5-diketo-D-gluconate reductase B K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D EFER_0337 eryB; erythritol phosphate dehydrogenase K21054 eryB; D-erythritol 1-phosphate dehydrogenase [EC:1.1.1.402]
D EFER_0433 conserved hypothetical protein, putative COG0287 K23245 apnO; D-apionate oxidoisomerase [EC:1.1.1.421]
D EFER_2494 ybdH; putative oxidoreductase K08317 hcxA; hydroxycarboxylate dehydrogenase A [EC:1.1.1.-]
D EFER_2943 yghZ; aldo-keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D EFER_0978 yliI; PQQ-dependent aldose sugar dehydrogenase precursor (asd) K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D EFER_2606 yajO; aldoketo-oxidoreductase, NADP-binding K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D EFER_3054 fadH; 2,4-dienoyl-CoA reductase, NADH and FMN-linked K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D EFER_1452 yncB; putative conserved oxidoreductase, Zn-dependent and NAD(P)-binding K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-]
D EFER_0047 caiA; crotonobetaine reductase subunit II, FAD-binding K08297 caiA; crotonobetainyl-CoA dehydrogenase [EC:1.3.8.13]
D EFER_1870 solA; N-methyltryptophan oxidase, FAD-binding K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-]
D EFER_0051 fixC; putative oxidoreductase with FAD/NAD(P)-binding domain K00313 fixC; electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-]
D EFER_4140 qor; quinone oxidoreductase, NADPH-dependent K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D EFER_2969 mdaB; NADPH quinone reductase K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D EFER_1589 azoR; NADH-azoreductase, FMN-dependent K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D EFER_2486 ahpF; alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D EFER_4299 msrA; methionine sulfoxide reductase A K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D EFER_1294 msrB; methionine sulfoxide reductase B K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D EFER_2932 yghU; S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D EFER_0861 yfcG; putative S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D EFER_4372 yqjG; S-transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D EFER_3232 yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D EFER_1584 cybB; cytochrome b561 K12262 cybB; superoxide oxidase [EC:1.10.3.17]
D EFER_0695 bcp; thiol peroxidase, thioredoxin-dependent K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D EFER_1650 tpx; lipid hydroperoxide peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D EFER_2487 ahpC; alkyl hydroperoxide reductase, C22 subunit K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D EFER_1499 osmC; osmotically inducible, stress-inducible membrane protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D EFER_0741 yfeX; conserved hypothetical protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D EFER_3415 yhhW; conserved hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D EFER_2304 ybiX; conserved hypothetical protein with PKHD hydroxylase domain K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-]
D EFER_0632 hmp; fused nitric oxide dioxygenase; dihydropteridine reductase 2 K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D EFER_0795 conserved hypothetical protein, putative COG1960 K22027 iacA; indole-3-acetate monooxygenase [EC:1.14.13.235]
D EFER_3022 yqjH; putative siderophore interacting protein K07229 yqjH; ferric-chelate reductase (NADPH) [EC:1.16.1.9]
D EFER_1119 ftn; ferritin iron storage protein (cytoplasmic) K02217 ftnA; ferritin [EC:1.16.3.2]
D EFER_0144 cueO; multicopper oxidase (laccase) K14588 cueO; cuproxidase [EC:1.16.3.4]
D EFER_3849 fpr; ferredoxin-NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D EFER_0367 norW; NADH:flavorubredoxin oxidoreductase K12265 norW; nitric oxide reductase FlRd-NAD(+) reductase [EC:1.18.1.-]
D EFER_0681 yfgD; putative oxidoreductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D EFER_3499 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D EFER_3018 Putative selenoprotein A of glycine-reductase K10670 grdA; glycine/sarcosine/betaine reductase complex component A [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D EFER_3019 Glycine/sarcosine/betaine reductase complex component A (Selenoprotein PA) (Thioredoxin reductase complex selenoprotein A) (fragment) K10670 grdA; glycine/sarcosine/betaine reductase complex component A [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D EFER_3015 Glycine reductase complex component B alpha and beta subunits (Selenoprotein PB alpha/beta) [Contains: Betaine reductase component B beta chain; Betaine reductase component B alpha chain] K10671 grdE; glycine reductase complex component B subunit alpha and beta [EC:1.21.4.2]
D EFER_3014 Glycine reductase complex component B gamma subunit (Selenoprotein PB gamma) K10672 grdB; glycine reductase complex component B subunit gamma [EC:1.21.4.2]
D EFER_3013 Glycine reductase complex component B gamma subunit (Selenoprotein PB gamma) (fragment) K10672 grdB; glycine reductase complex component B subunit gamma [EC:1.21.4.2]
D EFER_3016 Glycine/sarcosine/betaine reductase complex component C alpha subunit K21576 grdD; glycine/sarcosine/betaine reductase complex component C subunit alpha [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D EFER_3017 Glycine/sarcosine/betaine reductase complex component C beta subunit K21577 grdC; glycine/sarcosine/betaine reductase complex component C subunit beta [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D EFER_4318 nrdG; anaerobic ribonucleotide reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D EFER_1047 pflA; pyruvate formate lyase activating enzyme 1 K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D EFER_0966 ybiY; putative AdoMet-dependent glycyl radical activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D EFER_3811 pflC; pyruvate formate lyase II activase K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D EFER_1996 Putative pyruvate formate-lyase activating enzyme K20037 cutD; choline trimethylamine-lyase activating enzyme [EC:1.97.1.-]
D EFER_1017 hcr; HCP oxidoreductase, NADH-dependent K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D EFER_0694 putative hydrogenase 4, 4Fe-4S subunit K12136 hyfA; hydrogenase-4 component A [EC:1.-.-.-]
D EFER_0693 putative hydrogenase 4, membrane subunit K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-]
D EFER_0692 hyfC; hydrogenase 4, membrane subunit K12138 hyfC; hydrogenase-4 component C [EC:1.-.-.-]
D EFER_0691 hyfD; hydrogenase 4, membrane subunit K12139 hyfD; hydrogenase-4 component D [EC:1.-.-.-]
D EFER_0690 hyfE; hydrogenase 4, membrane subunit K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D EFER_0689 hyfF; hydrogenase 4, membrane subunit K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D EFER_0688 hyfG; hydrogenase 4, subunit K12142 hyfG; hydrogenase-4 component G [EC:1.-.-.-]
D EFER_0686 hyfI; hydrogenase 4, Fe-S subunit K12144 hyfI; hydrogenase-4 component I [EC:1.-.-.-]
D EFER_0685 putative processing element hydrogenase 4 K12145 hyfJ; hydrogenase-4 component J [EC:1.-.-.-]
D EFER_0325 pcm; L-isoaspartate protein carboxylmethyltransferase type II K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D EFER_1383 cfa; cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D EFER_1555 tam; trans-aconitate methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144]
D EFER_1508 tehB; putative AdoMet-dependent methyltransferase K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D EFER_1882 mdoC; membrane protein required for modification of periplasmic glucan K11941 mdoC; glucans biosynthesis protein C [EC:2.1.-.-]
D EFER_1477 nhoA; N-hydroxyarylamine O-acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118]
D EFER_1470 nhoA; N-hydroxyarylamine O-acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118]
D EFER_2445 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D EFER_3119 yhbS; putative acyltransferase with acyl-CoA N-acyltransferase domain K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D EFER_3547 yiaC; putative acyltransferase with acyl-CoA N-acyltransferase domain K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D EFER_4065 yjaB; putative acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-]
D EFER_4336 yjgM; putative acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D EFER_2671 yedL; putative acyltransferase K03829 yedL; putative acetyltransferase [EC:2.3.1.-]
D EFER_2746 yafP; putative acyltransferase with acyl-CoA N-acyltransferase domain K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D EFER_1451 yncA; putative acyl-CoA N-acyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]
D EFER_1033 aat; leucyl/phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D EFER_0490 yfiP; conserved hypothetical protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D EFER_2761 lgt; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D EFER_2020 putative propanediol utilization protein: B12 related pduO, Bifunctional ATP:cob(I)alamin adenosyltransferase/GlcG domain K27270 pduO; corrinoid adenosyltransferase [EC:2.5.1.-]
D EFER_0946 yojL; putative thiamine biosynthesis lipoprotein; defective assembly or repair of ThiH Fe-S cluster K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D EFER_0430 putative dihydroxyacetone kinase K20902 derK; D-erythrulose 4-kinase [EC:2.7.1.210]
D EFER_0338 eryA; erythritol kinase K00862 eryA; erythritol kinase (D-erythritol 1-phosphate-forming) [EC:2.7.1.215]
D EFER_1361 ydiA; conserved hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D EFER_2997 glnE; fused deadenylyltransferase; adenylyltransferase for glutamine synthetase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D EFER_3933 Putative retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D EFER_p0009 Putative reverse transcriptase/maturase, RetA (fragment) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D EFER_1579 yddV; putative diguanylate cyclase YddV K13069 E2.7.7.65; diguanylate cyclase [EC:2.7.7.65]
D EFER_2664 conserved hypothetical protein K13069 E2.7.7.65; diguanylate cyclase [EC:2.7.7.65]
D EFER_1815 yeaP; conserved hypothetical protein K13069 E2.7.7.65; diguanylate cyclase [EC:2.7.7.65]
D EFER_1540 ydeH; conserved hypothetical protein, putative diguanylate cyclase (GGDEF) K13069 E2.7.7.65; diguanylate cyclase [EC:2.7.7.65]
D EFER_3133 Conserved hypothetical protein similar to MadK from Malonomonas rubra K13934 mdcG; phosphoribosyl-dephospho-CoA transferase [EC:2.7.7.66]
D EFER_1358 ydiU; conserved hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D EFER_4396 mdoB; phosphoglycerol transferase I K01002 mdoB; phosphoglycerol transferase [EC:2.7.8.20]
D EFER_4069 aceK; isocitrate dehydrogenase kinase/phosphatase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D EFER_2980 assT; arylsulfate sulfotransferase K01023 assT; arylsulfate sulfotransferase [EC:2.8.2.22]
D EFER_3637 putative arylsulfatase; possibly exported K01023 assT; arylsulfate sulfotransferase [EC:2.8.2.22]
D EFER_0046 caiB; crotonobetainyl CoA:carnitine CoA transferase K08298 caiB; L-carnitine CoA-transferase [EC:2.8.3.21]
D EFER_1884 ymdB; conserved hypothetical protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D EFER_2510 fes; enterobactin/ferric enterobactin esterase K07214 fes; iron(III)-enterobactin esterase [EC:3.1.1.108]
D EFER_0526 aes; acetyl esterase K01066 aes; acetyl esterase [EC:3.1.1.-]
D EFER_2368 ybgC; acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D EFER_3459 putative thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D EFER_1236 pphA; serine/threonine-specific protein phosphatase 1 K07313 pphA; serine/threonine protein phosphatase 1 [EC:3.1.3.16]
D EFER_2055 pph; Serine/threonine-protein phosphatase K07313 pphA; serine/threonine protein phosphatase 1 [EC:3.1.3.16]
D EFER_0333 pphB; serine/threonine-specific protein phosphatase 2 K07314 pphB; serine/threonine protein phosphatase 2 [EC:3.1.3.16]
D EFER_0964 ybiV; type II HAD phosphatase K07757 ybiV; sugar-phosphatase [EC:3.1.3.23]
D EFER_1691 yciV; conserved hypothetical protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D EFER_0824 sixA; phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D EFER_1580 dos; cAMP phosphodiesterase, heme-regulated K13243 dos; c-di-GMP-specific phosphodiesterase [EC:3.1.4.52]
D EFER_2670 yahA; cyclic di-GMP phosphodiesterase K13244 pdeL; c-di-GMP-specific phosphodiesterase [EC:3.1.4.52]
D EFER_2668 conserved hypothetical protein; putative exported protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D EFER_2266 Rtn protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D EFER_2559 conserved hypothetical protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D EFER_0974 conserved hypothetical protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D EFER_0673 conserved hypothetical protein; putative inner membrane protein K26149 K26149; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D EFER_0775 conserved hypothetical protein K26149 K26149; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D EFER_3514 yhjK; putative diguanylate cyclase K26149 K26149; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D EFER_4287 yjcS; putative alkyl sulfatase K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21]
D EFER_2884 endA; DNA-specific endonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D EFER_1827 ycfH; putative metallodependent hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D EFER_4475 yjjV; putative DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D EFER_3641 tatD; DNase, magnesium-dependent K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D EFER_2422 ybfF; putative esterase K01175 ybfF; esterase [EC:3.1.-.-]
D EFER_2739 frsA; hydrolase, binds to enzyme IIA(Glc) K11750 frsA; esterase FrsA [EC:3.1.-.-]
D EFER_3516 bcsZ; endo-1,4-D-glucanase K20542 bcsZ; endoglucanase [EC:3.2.1.4]
D EFER_4440 ydfQ; putative membrane-associated lysozyme; Qin prophage K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D EFER_2052 ybcS; putative lysozyme; DLP12 prophage K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D EFER_2701 ybcS; putative lysozyme; DLP12 prophage K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D EFER_3949 yicI; putative alpha-glucosidase K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177]
D EFER_2372 mngB; alpha-mannosidase K15524 mngB; 2-O-(6-phospho-alpha-D-mannosyl)-D-glycerate hydrolase [EC:3.2.1.-]
D EFER_2310 ybiA; conserved hypothetical protein K09935 ybiA; N-glycosidase YbiA [EC:3.2.2.-]
D EFER_3059 D-aminoacylase (N-acyl-D-amino-acid deacylase) K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
D EFER_3270 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D EFER_1334 chbG; conserved hypothetical protein K03478 chbG; chitin disaccharide deacetylase [EC:3.5.1.105]
D EFER_2478 putative hydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D EFER_2836 yqfB; conserved hypothetical protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D EFER_4325 yjgF; ketoacid-binding protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D EFER_4350 agaI; galactosamine-6-phosphate isomerase K02080 agaI; putative deaminase/isomerase [EC:3.5.99.-]
D EFER_2998 ygiF; putative adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25]
D EFER_2135 nudD; GDP-mannose mannosyl hydrolase K03207 gmm; GDP-mannose mannosyl hydrolase [EC:3.6.1.-]
D EFER_2116 nudD; GDP-mannose mannosyl hydrolase K03207 gmm; GDP-mannose mannosyl hydrolase [EC:3.6.1.-]
D EFER_2571 cof; thiamin pyrimidine pyrophosphate hydrolase K11938 cof; HMP-PP phosphatase [EC:3.6.1.-]
D EFER_0918 yfaO; putative NUDIX hydrolase K12944 nudI; nucleoside triphosphatase [EC:3.6.1.-]
D EFER_0712 yffH; putative NUDIX hydrolase K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-]
D EFER_1842 yceF; conserved hypothetical protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D EFER_4045 ravA; fused regulatory ATPase variant A; conserved hypothetical protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D EFER_0432 putative sugar phosphate isomerases/epimerases (COG1082) K23248 oiaC; 3-oxoisoapionate decarboxylase [EC:4.1.1.120]
D EFER_0967 fsaA; fructose-6-phosphate aldolase 1 K08313 fsaA; fructose-6-phosphate aldolase 1 [EC:4.1.2.-]
D EFER_3816 fsaB; fructose-6-phosphate aldolase 2 K08314 fsaB; fructose-6-phosphate aldolase 2 [EC:4.1.2.-]
D EFER_4220 yjeF; putative carbohydrate kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D EFER_0044 caiD; crotonobetainyl CoA hydratase K08299 caiD; crotonobetainyl-CoA hydratase [EC:4.2.1.149]
D EFER_1995 putative Formate C-acetyltransferase (Pyruvate formate-lyase) K20038 cutC; choline trimethylamine-lyase [EC:4.3.99.4]
D EFER_0257 csdA; cysteine sulfinate desulfinase K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D EFER_3871 yiiL; L-rhamnose mutarotase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D EFER_0336 eryC; D-erythrulose-phosphate dehydrogenase K21909 eryC; D-erythrulose 1-phosphate 3-epimerase [EC:5.1.3.38]
D EFER_0370 gutQ; putative phosphosugar-binding protein K02467 gutQ; arabinose 5-phosphate isomerase [EC:5.3.1.13]
D EFER_3132 putative acyl carrier protein-SH: acetate K20415 madH; ACP-SH:acetate ligase [EC:6.2.1.35]
D EFER_0045 caiC; putative crotonobetaine CoA ligase:carnitine CoA ligase K02182 caiC; carnitine-CoA ligase [EC:6.2.1.48]
D EFER_4311 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D EFER_3388 rtcA; RNA 3'-terminal phosphate cyclase K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4]
D EFER_1413 rsxD; putative inner membrane oxidoreductase K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D EFER_1414 rsxC; putative 4Fe-4S ferredoxin-type protein fused with unknown protein K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D EFER_1415 rsxB; putative iron-sulfur protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D EFER_3442 zntA; zinc, cobalt and lead efflux system K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D EFER_0169 sfsA; putative regulator K06206 sfsA; sugar fermentation stimulation protein A
D EFER_1189 torT; periplasmic sensory protein associated with the TorRS two-component regulatory system K11930 torT; periplasmic protein TorT
D EFER_2013 putative Propanediol utilization: diol dehydratase reactivation PduG K27264 pduG; propanediol dehydratase-reactivating factor large subunit
D EFER_2014 putative Propanediol utilization: diol dehydratase reactivation PduH (modular protein) K27265 pduH; propanediol dehydratase-reactivating factor small subunit
C 99982 Energy metabolism
D EFER_3881 fdhD; formate dehydrogenase formation protein K02379 fdhD; FdhD protein
D EFER_0647 fdx; [2Fe-2S] ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D EFER_0929 yfaE; putative 2Fe-2S cluster-containing protein; putative oxidoreductase subunit K11107 yfaE; ferredoxin
D EFER_1412 rsxG; putative oxidoreductase K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D EFER_1411 rsxE; putative inner membrane NADH-quinone reductase K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D EFER_1416 rsxA; putative inner membrane subunit of an electron transport system K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D EFER_0365 hydN; formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit K05796 hydN; electron transport protein HydN
D EFER_4041 mioC; FMN-binding protein MioC K06205 mioC; MioC protein
D EFER_2830 fldB; flavodoxin 2 K03840 fldB; flavodoxin II
D EFER_0687 Hydrogenase-4 component H K12143 hyfH; hydrogenase-4 component H
D EFER_0643 iscU; scaffold protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D EFER_4314 cybC; soluble cytochrome b562 K15536 cybC; soluble cytochrome b562
D EFER_0353 hycB; hydrogenase 3, Fe-S subunit K15827 hycB; formate hydrogenlyase subunit 2
D EFER_0354 hycC; hydrogenase 3, membrane subunit K15828 hycC; formate hydrogenlyase subunit 3
D EFER_0355 hycD; hydrogenase 3, membrane subunit K15829 hycD; formate hydrogenlyase subunit 4
D EFER_0356 hycE; hydrogenase 3, large subunit K15830 hycE; formate hydrogenlyase subunit 5
D EFER_0357 hycF; formate hydrogenlyase complex iron-sulfur protein K15831 hycF; formate hydrogenlyase subunit 6
D EFER_0358 hycG; hydrogenase 3 and formate hydrogenase complex, HycG subunit K15832 hycG; formate hydrogenlyase subunit 7
D EFER_0368 norV; flavorubredoxin oxidoreductase K12264 norV; anaerobic nitric oxide reductase flavorubredoxin
D EFER_2297 napD; assembly protein for periplasmic nitrate reductase K02570 napD; periplasmic nitrate reductase NapD
D EFER_2298 napF; ferredoxin-type protein, putative role in electron transfer to periplasmic nitrate reductase (NapA) K02572 napF; ferredoxin-type protein NapF
D EFER_2424 fldA; flavodoxin 1 K03839 fldA; flavodoxin I
D EFER_2292 napC; nitrate reductase, cytochrome c-type,periplasmic K02569 napC; cytochrome c-type protein NapC
D EFER_2295 napG; ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) K02573 napG; ferredoxin-type protein NapG
D EFER_2294 napH; ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) K02574 napH; ferredoxin-type protein NapH
D EFER_0049 fixA; putative electron transfer flavoprotein subunit, ETFP adenine nucleotide-binding domain K03521 fixA; electron transfer flavoprotein beta subunit
D EFER_0052 fixX; putative 4Fe-4S ferredoxin K03855 fixX; ferredoxin like protein
C 99983 Lipid metabolism
D EFER_4240 aidB; isovaleryl CoA dehydrogenase K09456 aidB; putative acyl-CoA dehydrogenase
C 99984 Nucleotide metabolism
D EFER_0396 nrdI; protein that stimulates ribonucleotide reduction K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D EFER_0761 cysZ; putative inner membrane protein K06203 cysZ; CysZ protein
D EFER_0727 eutH; putative ethanolamine transporter K04023 eutH; ethanolamine transporter
D EFER_0725 eutJ; putative chaperonin, ethanolamine utilization protein K04024 eutJ; ethanolamine utilization protein EutJ
D EFER_0732 yffI; putative ethanolaminosome structural protein with putative role in ethanolamine utilization K04025 eutK; ethanolamine utilization protein EutK
D EFER_0731 eutL; putative carboxysome-related structural protein with putative role in ethanolamine utilization K04026 eutL; ethanolamine utilization protein EutL
D EFER_0723 cchB; putative carboxysome-like ethanolaminosome structural protein, ethanolamine utilization protein K04028 eutN; ethanolamine utilization protein EutN
D EFER_0718 eutP; putative nucleoside triphosphate hydrolase domain protein K04029 eutP; ethanolamine utilization protein EutP
D EFER_2026 conserved hypothetical protein; putative Propanediol utilization protein pduV K04029 eutP; ethanolamine utilization protein EutP
D EFER_0719 eutQ; conserved hypothetical protein involved in degradation of ethanolamine K04030 eutQ; ethanolamine utilization protein EutQ
D EFER_0717 ypfE; putative carboxysome-like ethanolaminosome structural protein with putative role in ethanol utilization K04031 eutS; ethanolamine utilization protein EutS
D EFER_2025 putative propanediol utilization protein: polyhedral bodies pduU K04031 eutS; ethanolamine utilization protein EutS
D EFER_0210 yaeR; putative S-C lyase K08234 yaeR; glyoxylase I family protein
D EFER_4503 leuL; leu operon leader peptide K05806 leuL; leu operon leader peptide
D EFER_1648 mpaA; murein peptide amidase A K14054 mpaA; murein peptide amidase A
D EFER_2890 yggS; putative enzyme K06997 yggS; PLP dependent protein
D EFER_3048 yhaM; conserved hypothetical protein K26607 cyuA; putative L-cysteine desulfidase
C 99986 Glycan metabolism
D EFER_2140 wcaD; putative colanic acid polymerase K13620 wcaD; putative colanic acid polymerase
D EFER_2127 wcaM; putative colanic acid biosynthesis protein K16711 wcaM; colanic acid biosynthesis protein WcaM
D EFER_1675 yciS; conserved hypothetical protein; putative inner membrane protein K08992 lapA; lipopolysaccharide assembly protein A
D EFER_1674 yciM; conserved hypothetical protein K19804 lapB; lipopolysaccharide assembly protein B
D EFER_2320 ybhN; conserved hypothetical protein; putative inner membrane protein K07027 K07027; glycosyltransferase 2 family protein
D EFER_1162 bcsB; regulator of cellulose synthase, cyclic di-GMP binding K20541 bcsB; cellulose synthase operon protein B
D EFER_3517 bcsB; regulator of cellulose synthase, cyclic di-GMP binding K20541 bcsB; cellulose synthase operon protein B
C 99987 Cofactor metabolism
D EFER_2860 yggC; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K02173 yggC; putative kinase
D EFER_3703 hemY; putative protoheme IX synthesis protein K02498 hemY; HemY protein
D EFER_3645 ubiB; 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D EFER_3646 yigP; conserved hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D EFER_2991 yqiC; conserved hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D EFER_3120 yhbT; putative lipid carrier protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D EFER_3620 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D EFER_2023 putative propanediol utilization protein: ferredoxin pduS K27271 pduS; cobalamin reductase
C 99988 Secondary metabolism
D EFER_2963 sufI; repressor protein for FtsI K04753 sufI; suppressor of ftsI
D EFER_4009 yieF; chromate reductase, Class I, flavoprotein K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D EFER_0635 yphA; conserved hypothetical protein; putative inner membrane protein K15977 K15977; putative oxidoreductase
D EFER_1016 conserved hypothetical protein; putative membrane protein K15977 K15977; putative oxidoreductase
D EFER_4373 yqjF; putative quinol oxidase subunit K15977 K15977; putative oxidoreductase
D EFER_0704 ypfH; putative hydrolase K06999 K06999; phospholipase/carboxylesterase
D EFER_0489 yfiQ; fused acyl-CoA synthetase: NAD(P)-binding subunit; ATP-binding subunit K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D EFER_3217 putative barnase inhibitor K03623 yhcO; ribonuclease inhibitor
D EFER_1028 cspD; cold shock protein homolog K03704 cspA; cold shock protein
D EFER_2480 cspE; DNA-binding transcriptional repressor K03704 cspA; cold shock protein
D EFER_3558 cspA; major cold shock protein K03704 cspA; cold shock protein
D EFER_4435 cspF; cold shock protein; Qin prophage K03704 cspA; cold shock protein
D EFER_4436 cspB; cold shock protein; Qin prophage K03704 cspA; cold shock protein
D EFER_4442 cspI; cold shock protein; Qin prophage K03704 cspA; cold shock protein
D EFER_1252 cspC; stress protein, member of the CspA-family K03704 cspA; cold shock protein
D EFER_3759 rsd; stationary phase protein, binds sigma 70 RNA polymerase subunit K07740 rsd; regulator of sigma D
D EFER_4506 trpL; trp operon leader peptide K07802 trpL; trp operon leader peptide
D EFER_4502 thrL; thr operon leader peptide K08278 thrL; thr operon leader peptide
D EFER_0352 hycA; regulator of the transcriptional regulator FhlA K15833 hycA; formate hydrogenlyase regulatory protein HycA
D EFER_0359 hycH; protein required for maturation of hydrogenase 3 K15834 hycH; formate hydrogenlyase maturation protein HycH
D EFER_2567 glnK; nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB K04752 glnK; nitrogen regulatory protein P-II 2
D EFER_3375 yhgF; transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
D EFER_3478 rbbA; fused ribosome-associated ATPase: ATP-binding protein; ATP-binding protein; putative membrane protein K13926 rbbA; ribosome-dependent ATPase
C 99975 Protein processing
D EFER_1619 hslJ; Heat-inducible protein K03668 hslJ; heat shock protein HslJ
D EFER_1029 clpS; regulatory protein for ClpA substrate specificity K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D EFER_2581 tig; peptidyl-prolyl cis/trans isomerase (trigger factor) K03545 tig; trigger factor
D EFER_3233 yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D EFER_3886 fdhE; formate dehydrogenase formation protein K02380 fdhE; FdhE protein
D EFER_0453 smpB; trans-translation protein K03664 smpB; SsrA-binding protein
D EFER_0349 hypC; protein required for maturation of hydrogenases 1 and 3 K04653 hypC; hydrogenase expression/formation protein HypC
D EFER_2933 hybG; hydrogenase 2 accessory protein K04653 hypC; hydrogenase expression/formation protein HypC
D EFER_0348 hypD; protein required for maturation of hydrogenases K04654 hypD; hydrogenase expression/formation protein HypD
D EFER_0347 hypE; carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein K04655 hypE; hydrogenase expression/formation protein HypE
D EFER_0366 hypF; carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases K04656 hypF; hydrogenase maturation protein HypF
D EFER_0397 nrdH; glutaredoxin-like protein K06191 nrdH; glutaredoxin-like protein NrdH
D EFER_3736 yifB; putative bifunctional enzyme and transcriptional regulator K07391 comM; magnesium chelatase family protein
D EFER_3329 yhfA; conserved hypothetical protein K07397 yhfA; putative redox protein
D EFER_3383 gntY; putative gluconate transport associated protein K07400 nfuA; Fe/S biogenesis protein NfuA
D EFER_2822 yagQ; conserved hypothetical protein K07402 xdhC; xanthine dehydrogenase accessory factor
D EFER_1457 yncG; putative enzyme with similarity with GST K11208 yncG; GST-like protein
C 99976 Replication and repair
D EFER_2562 ybaZ; putative methylated DNA-protein cysteine alkyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D EFER_0262 exo; exonuclease IX (5'-3' exonuclease) K01146 xni; protein Xni
D EFER_3106 conserved hypothetical protein; putative exported protein, predicted restriction endonuclease K07454 K07454; putative restriction endonuclease
D EFER_3929 yicR; protein associated with replication fork, putative DNA repair protein K03630 radC; DNA repair protein RadC
D EFER_3648 rmuC; recombination limiting protein K09760 rmuC; DNA recombination protein RmuC
D EFER_1023 ybjD; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D EFER_2804 conserved hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D EFER_4347 yraN; conserved hypothetical protein K07460 yraN; putative endonuclease
D EFER_3118 yhbQ; putative endonuclease K07461 K07461; putative endonuclease
D EFER_3269 smf; conserved hypothetical protein K04096 smf; DNA processing protein
D EFER_2030 sbmC; DNA gyrase inhibitor; in high copy protects cells from replication inhibitor MccB17; SOS induced; blocks MccB17 export (SbmC protein) K07470 sbmC; DNA gyrase inhibitor
D EFER_1041 ycaJ; recombination protein K07478 ycaJ; putative ATPase
D EFER_3267 yrdD; putative DNA topoisomerase K07479 yrdD; putative DNA topoisomerase
D EFER_4468 pinR; putative site-specific recombinase; DNA invertase; Rac prophage K14060 pinR; putative DNA-invertase from lambdoid prophage Rac
D EFER_0808 Putative inner membrane protein (modular protein) from phage origin K06919 K06919; putative DNA primase/helicase
D EFER_0440 phage DNA primase K06919 K06919; putative DNA primase/helicase
D EFER_p0013 tranposase, ORF B, insertion element IS1 K07480 insB; insertion element IS1 protein InsB
D EFER_2459 insE; IS3 element protein InsE K07483 K07483; transposase
D EFER_p0032 YahA protein K07483 K07483; transposase
D EFER_2791 insE; IS3 element protein InsE K07483 K07483; transposase
D EFER_1020 putative transposase, IS110 family K07486 K07486; transposase
D EFER_p0028 conserved hypothetical protein, homologous to putative transposase, IS110 family K07486 K07486; transposase
D EFER_2149 putative transposase, IS110 family K07486 K07486; transposase
D EFER_1558 putative transposase, IS605 family, IS200 group K07491 rayT; REP-associated tyrosine transposase
D EFER_0286 insG; putative IS4 transposase; KpLE2 phage-like element K07495 K07495; putative transposase
D EFER_2260 insG; putative IS4 transposase; KpLE2 phage-like element K07495 K07495; putative transposase
D EFER_2563 insG; putative IS4 transposase; KpLE2 phage-like element K07495 K07495; putative transposase
D EFER_4304 insG; putative IS4 transposase; KpLE2 phage-like element K07495 K07495; putative transposase
D EFER_1556 ydcM; putative transposase K07496 K07496; putative transposase
D EFER_2799 transposase ORF B, IS911 K07497 K07497; putative transposase
D EFER_p0017 putative transposase (fragment) K07497 K07497; putative transposase
D EFER_2792 insF; IS3 element protein InsF K07497 K07497; putative transposase
D EFER_2458 insF; IS3 element protein InsF K07497 K07497; putative transposase
D EFER_p0052 putative transposase (fragment) K07497 K07497; putative transposase
D EFER_4324 conserved hypothetical protein,homologous to putative transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D EFER_1658 pspA; regulatory protein for phage-shock-protein operon K03969 pspA; phage shock protein A
D EFER_1655 pspD; peripheral inner membrane phage-shock protein K03971 pspD; phage shock protein D
D EFER_1654 pspE; thiosulfate:cyanide sulfurtransferase (rhodanese) K03972 pspE; phage shock protein E
D EFER_2546 ybaB; conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D EFER_0817 yfdC; conserved hypothetical protein; putative inner membrane protein K21990 yfdC; formate-nitrite transporter family protein
D EFER_3950 yicJ; putative transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D EFER_3708 yifK; putative amino acid transporter K03293 TC.AAT; amino acid transporter, AAT family
D EFER_1899 yjdL; putative transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D EFER_2408 ybgH; putative transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D EFER_3489 yhiP; transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D EFER_1409 ydgR; putative oligopeptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D EFER_3057 putative Na+/proline symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D EFER_0006 yaaJ; putative amino acid sodium/proton transporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D EFER_2624 brnQ; branched chain amino acid transporter (LIV-II) K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D EFER_2953 Putative sodium:sulfate symporter K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D EFER_0990 ybjL; putative transporter K07085 K07085; putative transport protein
D EFER_3980 yidE; putative transporter K07085 K07085; putative transport protein
D EFER_2192 yohN; conserved hypothetical protein K23243 rcnB; nickel/cobalt homeostasis protein
C 99978 Cell growth
D EFER_1700 yciB; putative intracellular septation protein involved in cell division K06190 ispZ; intracellular septation protein
D EFER_3446 dcrB; periplasmic protein K27311 dcrB; inner membrane lipoprotein DcrB
D EFER_4269 ytfE; regulator of cell morphogenesis and cell wall metabolism K07322 ytfE; regulator of cell morphogenesis and NO signaling
D EFER_1337 cedA; cell division modulator K15722 cedA; cell division activator
D EFER_3607 envC; protease with a role in cell division K22719 envC; murein hydrolase activator
C 99993 Cell motility
D EFER_1823 ycfM; putative outer membrane lipoprotein K07337 K07337; penicillin-binding protein activator
D EFER_1096 Conserved hypothetical protein K07343 tfoX; DNA transformation protein and related proteins
D EFER_0163 ecpD; periplasmic pilin chaperone K15540 ecpD; chaperone protein EcpD
D EFER_0267 syd; conserved hypothetical protein K15723 syd; SecY interacting protein Syd
D EFER_2992 glgS; Glycogen synthesis protein glgS K22720 glgS; surface composition regulator
C 99995 Signaling proteins
D EFER_0131 ampE; conserved hypothetical protein; putative inner membrane protein K03807 ampE; AmpE protein
D EFER_1243 proQ; ProP transporter amplifier K03607 proQ; ProP effector
D EFER_3488 uspA; universal stress global response regulator K06149 uspA; universal stress protein A
D EFER_1128 yecG; universal stress protein K14064 uspC; universal stress protein C
D EFER_3850 yiiT; stress-induced protein K14065 uspD; universal stress protein D
D EFER_1644 uspE; stress-induced protein K14055 uspE; universal stress protein E
D EFER_1624 uspF; stress-induced protein, ATP-binding protein K14061 uspF; universal stress protein F
D EFER_2485 uspG; universal stress protein UP12 K11932 uspG; universal stress protein G
D EFER_2496 cstA; carbon starvation protein K06200 cstA; carbon starvation protein
D EFER_3901 bipA; GTP-binding protein K06207 typA; GTP-binding protein
D EFER_1908 phoH; putative phosphate starvation-inducible protein with ATPase activity K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D EFER_2442 ybeZ; putative enzyme with nucleoside triphosphate hydrolase domain K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D EFER_1805 yeaG; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K07180 prkA; serine protein kinase
D EFER_3000 htrG; putative signal transduction protein (SH3 domain) K07184 ygiM; SH3 domain protein
D EFER_4484 ytjB; conserved hypothetical protein K07186 smp; membrane protein
D EFER_1543 marB; Multiple antibiotic resistance protein, putative exported protein K13630 marB; multiple antibiotic resistance protein MarB
D EFER_2599 yajQ; putative nucleotide binding protein (UPF0234 protein) K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D EFER_1040 lolA; chaperone for lipoproteins K03634 lolA; outer membrane lipoprotein carrier protein
D EFER_1752 lolB; chaperone for lipoproteins K02494 lolB; outer membrane lipoprotein LolB
D EFER_0818 vacJ; putative lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D EFER_3719 wzzE; Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE
D EFER_1402 slyB; putative outer membrane lipoprotein K06077 slyB; outer membrane lipoprotein SlyB
D EFER_0201 hlpA; periplasmic chaperone K06142 hlpA; outer membrane protein
D EFER_0327 nlpD; outer membrane lipoprotein K06194 nlpD; lipoprotein NlpD
D EFER_2807 ygeR; Tetratricopeptide repeat transcriptional regulator K12943 ygeR; lipoprotein YgeR
D EFER_3142 nlpI; lipoprotein precursor K05803 nlpI; lipoprotein NlpI
D EFER_2188 yegX; putative membrane-bound hydrolase K07273 acm; lysozyme
D EFER_1697 ompW; outer membrane protein W K07275 ompW; outer membrane protein
D EFER_1346 ydiY; conserved hypothetical protein K07283 ydiY; putative salt-induced outer membrane protein
D EFER_3031 slp; outer membrane lipoprotein K07285 slp; outer membrane lipoprotein
D EFER_1274 yeaY; putative outer membrane-associated lipoprotein K07285 slp; outer membrane lipoprotein
D EFER_2583 yajG; putative lipoprotein K07286 yajG; uncharacterized lipoprotein
D EFER_2150 asmA; putative inner membrane protein involved in outer membrane protein assembly K07289 asmA; AsmA protein
D EFER_3507 yhjG; putative outer membrane biogenesis protein K07290 yhjG; AsmA family protein
D EFER_0546 ybbJ; conserved hypothetical protein; putative inner membrane protein K07340 ybbJ; inner membrane protein
D EFER_3479 yhiI; putative HlyD family secretion protein K01993 ABC-2.TX; HlyD family secretion protein
D EFER_1671 osmB; lipoprotein K04062 osmB; osmotically inducible lipoprotein OsmB
D EFER_1328 osmE; DNA-binding transcriptional activator K04064 osmE; osmotically inducible lipoprotein OsmE
D EFER_4499 creD; Inner membrane protein K06143 creD; inner membrane protein
D EFER_2287 ccmE; periplasmic heme chaperone K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D EFER_2284 ccmH; heme lyase, CcmH subunit K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D EFER_0656 yfgA; conserved hypothetical protein; putative HTH-type transcriptional regulator K15539 rodZ; cytoskeleton protein RodZ
D EFER_3220 aaeX; membrane protein of efflux system K21695 aaeX; protein AaeX
D EFER_3036 hdeD; Putative membrane transporter, H-NS repressed HdeD protein K21908 hdeD; membrane protein HdeD
D EFER_2009 putative Propanediol utilization protein: polyhedral bodies pduB K27263 pduB; bacterial microcompartment shell protein
D EFER_2016 putative propanediol utilization protein: polyhedral bodies PduK K27267 pduK; bacterial microcompartment shell protein
D EFER_2018 conserved hypothetical protein, putative Propanediol utilization pduM K27268 pduM; bacterial microcompartment assembly protein
D EFER_2019 putative Propanediol utilization: polyhedral bodies pduN K27269 pduN; bacterial microcompartment shell vertex protein
D EFER_2024 putative Propanediol utilization: polyhedral bodies pduT K27272 pduT; bacterial microcompartment shell protein
C 99994 Others
D EFER_4022 phoU; negative regulator of PhoR/PhoB two-component regulator K02039 phoU; phosphate transport system protein
D EFER_1121 yecI; putative ferritin-like protein K02255 ftnB; ferritin-like protein 2
D EFER_3308 bfd; bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin
D EFER_1879 mdoG; glucan biosynthesis protein, periplasmic K03670 mdoG; periplasmic glucans biosynthesis protein
D EFER_4189 cutA; divalent-cation tolerance protein CutA (C-type cytochrome biogenesis protein cycY) K03926 cutA; periplasmic divalent cation tolerance protein
D EFER_1200 cutC; copper homeostasis protein K06201 cutC; copper homeostasis protein
D EFER_0061 apaG; protein associated with Co2+ and Mg2+ efflux K06195 apaG; ApaG protein
D EFER_3697 cyaY; frataxin, iron-binding and oxidizing protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D EFER_2813 putative pyridine nucleotide-disulphide oxidoreductase K07222 K07222; putative flavoprotein involved in K+ transport
D EFER_1741 ychN; conserved hypothetical protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
B
B 09194 Poorly characterized
C 99996 General function prediction only
D EFER_0850 cvpA; membrane protein required for colicin V production K03558 cvpA; membrane protein required for colicin V production
D EFER_3568 bax; conserved hypothetical protein K03796 bax; Bax protein
D EFER_1088 pqiB; paraquat-inducible protein B K06192 pqiB; paraquat-inducible protein B
D EFER_1861 mviM; putative oxidoreductase with NAD(P)-binding Rossmann-fold domain K03810 mviM; virulence factor
D EFER_0901 elaA; putative acyltransferase with acyl-CoA N-acyltransferase domain K02348 elaA; ElaA protein
D EFER_0487 yfiM; conserved hypothetical protein K05811 yfiM; putative lipoprotein
D EFER_1743 chaB; putative conserved cation transport regulator K06197 chaB; cation transport regulator
D EFER_1596 paaY; putative hexapeptide repeat acetyltransferase K02617 paaY; phenylacetic acid degradation protein
D EFER_4472 osmY; periplasmic protein K04065 osmY; hyperosmotically inducible periplasmic protein
D EFER_1896 ycdX; putative PHP hydrolase K04477 ycdX; putative hydrolase
D EFER_0495 yfiD; pyruvate formate lyase subunit K06866 grcA; autonomous glycyl radical cofactor
D EFER_3085 conserved hypothetical protein, putative DEAD-box helicase-related protein (modular protein) K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D EFER_1721 rssA; putative esterase of the alpha-beta hydrolase superfamily K07001 K07001; NTE family protein
D EFER_0179 yadR; putative chaperone involved in Fe-S cluster assembly and activation; hesB-like K15724 erpA; iron-sulfur cluster insertion protein
D EFER_1368 sufA; Fe-S cluster assembly protein K05997 sufA; Fe-S cluster assembly protein SufA
D EFER_1369 sufB; component of SufBCD complex K09014 sufB; Fe-S cluster assembly protein SufB
D EFER_1371 sufD; component of SufBCD complex K09015 sufD; Fe-S cluster assembly protein SufD
D EFER_0569 ybcI; conserved hypothetical protein; putative inner membrane protein K07038 K07038; inner membrane protein
D EFER_1339 ydjM; conserved hypothetical protein; putative inner membrane protein regulated by LexA K07038 K07038; inner membrane protein
D EFER_3345 php; putative hydrolase K07048 PTER; phosphotriesterase-related protein
D EFER_3505 yhjD; conserved hypothetical protein; putative inner membrane protein K07058 K07058; membrane protein
D EFER_3893 rbn; conserved hypothetical protein; putative inner membrane protein K07058 K07058; membrane protein
D EFER_4192 fxsA; inner membrane protein K07113 fxsA; UPF0716 protein FxsA
D EFER_0256 ygdK; putative Fe-S metabolism protein (sufE-like) K02426 sufE; cysteine desulfuration protein SufE
D EFER_1373 sufE; sulfur acceptor protein K02426 sufE; cysteine desulfuration protein SufE
D EFER_1873 yceA; conserved hypothetical protein K07146 K07146; UPF0176 protein
D EFER_1798 hflD; putative inner membrane protein; lambda lysogenization regulator, UPF0274 family K07153 hflD; high frequency lysogenization protein
D EFER_0043 caiE; putative acyl transferase K08279 caiE; carnitine operon protein CaiE
D EFER_4278 putative enzyme; putative protein PhnB K04750 phnB; PhnB protein
D EFER_2781 nfrA; bacteriophage N4 receptor, subunit, outer membrane protein K11739 nfrA; bacteriophage N4 adsorption protein A
D EFER_2780 nfrB; bacteriophage N4 receptor, inner membrane subunit K11740 nfrB; bacteriophage N4 adsorption protein B
D EFER_1876 msyB; conserved hypothetical protein K12147 msyB; acidic protein MsyB
D EFER_4407 fhuF; ferric iron reductase involved in ferric hydroximate transport K13255 fhuF; ferric iron reductase protein FhuF
D EFER_0275 gudX; glucarate dehydratase K13918 gudX; glucarate dehydratase-related protein
D EFER_0292 conserved hypothetical protein K03744 lemA; LemA protein
D EFER_3318 slyX; conserved hypothetical protein K03745 slyX; SlyX protein
D EFER_3268 smg; conserved hypothetical protein K03747 smg; Smg protein
D EFER_4496 creA; conserved hypothetical protein K05805 creA; CreA protein
D EFER_2883 sprT; conserved hypothetical protein K02742 sprT; SprT protein
D EFER_0849 dedD; conserved hypothetical protein K03749 dedD; DedD protein
D EFER_3354 damX; conserved hypothetical protein K03112 damX; DamX protein
D EFER_2229 sanA; conserved hypothetical protein K03748 sanA; SanA protein
D EFER_0846 dedA; conserved hypothetical protein; putative inner membrane protein K03975 dedA; membrane-associated protein
D EFER_1087 pqiA; paraquat-inducible membrane protein A K03808 pqiA; paraquat-inducible protein A
D EFER_1241 yebS; conserved hypothetical protein; putative inner membrane protein K03808 pqiA; paraquat-inducible protein A
D EFER_0902 elaB; conserved hypothetical protein K05594 elaB; ElaB protein
D EFER_3976 yidH; conserved hypothetical protein; putative inner membrane protein K00389 yidH; putative membrane protein
D EFER_4175 yjdF; conserved hypothetical protein; putative inner membrane protein K08984 yjdF; putative membrane protein
D EFER_4237 yjfL; conserved hypothetical protein; putative inner membrane protein K08989 K08989; putative membrane protein
D EFER_1652 ycjF; conserved hypothetical protein; putative inner membrane protein K08990 ycjF; putative membrane protein
D EFER_3439 conserved hypothetical protein K08993 yhhL; putative membrane protein
D EFER_1722 ychJ; conserved hypothetical protein K09858 K09858; SEC-C motif domain protein
D EFER_2564 ybaY; putative lipoprotein K09914 K09914; putative lipoprotein
D EFER_1115 hyaF; protein involved in nickel incorporation into hydrogenase-1 proteins K03618 hyaF; hydrogenase-1 operon protein HyaF
D EFER_1114 hyaE; protein involved in processing of HyaA and HyaB proteins K03619 hyaE; hydrogenase-1 operon protein HyaE
D EFER_4129 malM; maltose regulon periplasmic protein K05775 malM; maltose operon periplasmic protein
D EFER_4122 yjbA; putative phosphate starvation inducible protein K13256 psiE; protein PsiE
D EFER_2633 AroM protein K14591 aroM; protein AroM
D EFER_4167 phnA; conserved hypothetical protein K06193 phnA; protein PhnA
C 99997 Function unknown
D EFER_0417 yahD; putative protein with ankyrin domain K06867 K06867; uncharacterized protein
D EFER_3974 putative sulfur metabolism regulator K06871 K06871; uncharacterized protein
D EFER_3706 aslB; regulator of arylsulfatase activity K06871 K06871; uncharacterized protein
D EFER_0288 conserved hypothetical protein; putative membrane protein K06872 K06872; uncharacterized protein
D EFER_0290 conserved hypothetical protein; putative membrane protein K06872 K06872; uncharacterized protein
D EFER_0291 ygcG; conserved hypothetical protein; putative membrane protein K06872 K06872; uncharacterized protein
D EFER_1962 conserved hypothetical protein (Hcp-like), similar to Aec32 K06887 K06887; uncharacterized protein
D EFER_4243 putative esterase yjfP K06889 K06889; uncharacterized protein
D EFER_0638 yfhR; putative peptidase K06889 K06889; uncharacterized protein
D EFER_4029 putative membrane protein K06890 K06890; uncharacterized protein
D EFER_2323 ybhM; conserved hypothetical protein; putative inner membrane protein K06890 K06890; uncharacterized protein
D EFER_2325 ybhL; conserved hypothetical protein; putative inner membrane protein K06890 K06890; uncharacterized protein
D EFER_2680 W; putative baseplate assembly protein W K06903 W; Bacteriophage baseplate protein W
D EFER_4098 putative phage baseplate protein K06903 W; Bacteriophage baseplate protein W
D EFER_4100 putative control protein for phage late genes expression K06905 D; Bacteriophage probable baseplate hub protein
D EFER_2681 putative Phage late control gene D protein (GPD) K06905 D; Bacteriophage probable baseplate hub protein
D EFER_2683 putative Phage-related tail protein K06906 gpU; phage tail protein
D EFER_2687 putative major tail sheath protein (Protein FI) K06907 FI; Bacteriophage tail sheath protein
D EFER_4107 putative phage tail sheath protein K06907 FI; Bacteriophage tail sheath protein
D EFER_2686 putative major tail tube protein (Protein FII) K06908 FII; Bacteriophage tail tube protein
D EFER_4106 phage tail core protein K06908 FII; Bacteriophage tail tube protein
D EFER_1653 ycjX; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K06918 K06918; uncharacterized protein
D EFER_1102 yccU; putative CoA-binding protein K06929 K06929; uncharacterized protein
D EFER_1698 ykgJ; putative ferredoxin K06940 K06940; uncharacterized protein
D EFER_2258 yeiW; conserved hypothetical protein K06940 K06940; uncharacterized protein
D EFER_1945 conserved hypothetical protein, putative Metal-dependent phosphohydrolase, similar to yedJ K06950 K06950; uncharacterized protein
D EFER_1338 ydjN; putative cation-acid symporter K06956 K06956; uncharacterized protein
D EFER_1820 ycfP; conserved hypothetical protein K07000 K07000; uncharacterized protein
D EFER_2972 yqiA; putative esterase K07000 K07000; uncharacterized protein
D EFER_2280 yejM; putative hydrolase, inner membrane-associated K07014 K07014; uncharacterized protein
D EFER_3325 yheT; putative hydrolase K07019 K07019; uncharacterized protein
D EFER_0009 yaaH; conserved hypothetical protein; putative inner membrane protein associated with acetate transport K07034 K07034; uncharacterized protein
D EFER_1116 yecA; conserved hypothetical protein; putative metal-binding protein K07039 K07039; uncharacterized protein
D EFER_0702 ypfJ; conserved hypothetical protein K07054 K07054; uncharacterized protein
D EFER_3320 yheV; conserved hypothetical protein K07070 K07070; uncharacterized protein
D EFER_0859 yfcH; conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain K07071 K07071; uncharacterized protein
D EFER_4091 conserved hypothetical protein K07074 K07074; uncharacterized protein
D EFER_3501 putative membrane protein K07089 K07089; uncharacterized protein
D EFER_3114 yraQ; putative permease K07089 K07089; uncharacterized protein
D EFER_0836 yfcA; conserved hypothetical protein; putative inner membrane protein K07090 K07090; uncharacterized protein
D EFER_0863 yfcE; putative phosphatase K07095 K07095; uncharacterized protein
D EFER_0187 yaeI; putative metallophosphoesterase K07098 K07098; uncharacterized protein
D EFER_4275 ytfJ; putative transcriptional regulator K07109 K07109; uncharacterized protein
D EFER_2096 yeeE; conserved hypothetical protein; putative inner membrane protein K07112 K07112; uncharacterized protein
D EFER_1164 yedE; conserved hypothetical protein; putative inner membrane protein K07112 K07112; uncharacterized protein
D EFER_2400 abrB; putative membrane protein K07120 K07120; uncharacterized protein
D EFER_4348 yraM; conserved hypothetical protein K07121 K07121; uncharacterized protein
D EFER_2462 ybeQ; conserved hypothetical protein K07126 K07126; uncharacterized protein
D EFER_2456 ybeT; conserved hypothetical protein; putative outer membrane protein K07126 K07126; uncharacterized protein
D EFER_4303 conserved hypothetical protein K07126 K07126; uncharacterized protein
D EFER_4294 yjcO; conserved hypothetical protein K07126 K07126; uncharacterized protein
D EFER_2590 putative periplasmic protein K07126 K07126; uncharacterized protein
D EFER_1203 yecN; conserved hypothetical protein; putative inner membrane protein K07136 K07136; uncharacterized protein
D EFER_3188 yhcC; putative Fe-S oxidoreductase K07139 K07139; uncharacterized protein
D EFER_1084 ycbX; putative 2Fe-2S cluster-containing protein K07140 K07140; MOSC domain-containing protein
D EFER_2237 yeiB; conserved hypothetical protein; putative inner membrane protein K07148 K07148; uncharacterized protein
D EFER_2909 yqgA; conserved hypothetical protein; putative inner membrane protein K07150 K07150; uncharacterized protein
D EFER_4001 yidD; conserved hypothetical protein K08998 K08998; uncharacterized protein
D EFER_2892 yggU; conserved hypothetical protein K09131 K09131; uncharacterized protein
D EFER_2474 ybeD; conserved hypothetical protein K09158 K09158; uncharacterized protein
D EFER_1773 ycgN; conserved hypothetical protein K09160 K09160; uncharacterized protein
D EFER_0875 yfbU; conserved hypothetical protein K09161 K09161; uncharacterized protein
D EFER_1814 yoaF; conserved hypothetical protein; putative exported protein K09712 K09712; uncharacterized protein
D EFER_2636 yaiI; conserved hypothetical protein K09768 K09768; uncharacterized protein
D EFER_1703 yciI; putative enzyme K09780 K09780; uncharacterized protein
D EFER_1942 yedI; conserved hypothetical protein; putative inner membrane protein K09781 K09781; uncharacterized protein
D EFER_1806 yeaH; conserved hypothetical protein K09786 K09786; uncharacterized protein
D EFER_2549 ybaN; conserved hypothetical protein; putative inner membrane protein K09790 K09790; uncharacterized protein
D EFER_1061 ycaR; conserved hypothetical protein K09791 K09791; uncharacterized protein
D EFER_1505 ydcH; conserved hypothetical protein K09794 K09794; uncharacterized protein
D EFER_1298 conserved hypothetical protein; putative membraner exported protein K09797 K09797; uncharacterized protein
D EFER_3608 yibQ; putative polysaccharide deacetylase K09798 K09798; uncharacterized protein
D EFER_0455 yfjF; conserved hypothetical protein K09801 K09801; uncharacterized protein
D EFER_2028 yeeX; conserved hypothetical protein K09802 K09802; uncharacterized protein
D EFER_3077 conserved hypothetical protein K09803 K09803; uncharacterized protein
D EFER_2854 yggE; conserved hypothetical protein K09807 K09807; uncharacterized protein
D EFER_1024 conserved hypothetical protein K09824 virK; uncharacterized protein
D EFER_1915 virK; VirK, required for proper localization of IcsA (VirG) at the surface of bacteria (Virulence protein) K09824 virK; uncharacterized protein
D EFER_1089 ymbA; conserved hypothetical protein K09857 K09857; uncharacterized protein
D EFER_0005 yaaA; conserved hypothetical protein; family UPF0246 K09861 K09861; uncharacterized protein
D EFER_0122 yacG; conserved hypothetical protein K09862 K09862; uncharacterized protein
D EFER_3755 yjaG; conserved hypothetical protein K09891 K09891; uncharacterized protein
D EFER_3611 yihI; conserved hypothetical protein K09894 K09894; uncharacterized protein
D EFER_2846 ygfB; conserved hypothetical protein K09895 K09895; uncharacterized protein
D EFER_3618 yihD; conserved hypothetical protein K09896 K09896; uncharacterized protein
D EFER_3737 yifE; conserved hypothetical protein K09897 K09897; uncharacterized protein
D EFER_3326 yheU; conserved hypothetical protein K09898 K09898; uncharacterized protein
D EFER_0874 yfbV; conserved hypothetical protein; putative inner membrane protein K09899 K09899; uncharacterized protein
D EFER_1706 yciU; conserved hypothetical protein K09901 K09901; uncharacterized protein
D EFER_1775 ycgL; conserved hypothetical protein K09902 K09902; uncharacterized protein
D EFER_2279 yejL; conserved hypothetical protein K09904 K09904; uncharacterized protein
D EFER_1199 yecM; putative metal-binding enzyme K09907 K09907; uncharacterized protein
D EFER_3204 yhcB; putative cytochrome d ubiquinol oxidase subunit III K09908 K09908; uncharacterized protein
D EFER_1101 yccT; conserved hypothetical protein K09909 K09909; uncharacterized protein
D EFER_0140 yacL; conserved hypothetical protein K09910 K09910; uncharacterized protein
D EFER_1093 ycbG; conserved hypothetical protein K09911 K09911; uncharacterized protein
D EFER_4076 yaiL; nucleoprotein/polynucleotide-associated enzyme K09912 K09912; uncharacterized protein
D EFER_1862 yceH; conserved hypothetical protein K09915 K09915; uncharacterized protein
D EFER_1295 yeaC; conserved hypothetical protein K09916 K09916; uncharacterized protein
D EFER_1265 yoaH; conserved hypothetical protein K09917 K09917; uncharacterized protein
D EFER_1225 yebG; DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS (modular protein) K09918 K09918; uncharacterized protein
D EFER_2974 yqiB; putative dehydrogenase K09920 K09920; uncharacterized protein
D EFER_3692 yigA; conserved hypothetical protein K09921 K09921; uncharacterized protein
D EFER_2901 yggL; conserved hypothetical protein K09923 K09923; uncharacterized protein
D EFER_4015 conserved hypothetical protein K09925 K09925; uncharacterized protein
D EFER_1060 ycaQ; conserved hypothetical protein (N-terminal fragment) K09927 K09927; uncharacterized protein
D EFER_4229 yjeT; conserved hypothetical protein; putative inner membrane protein K09937 K09937; uncharacterized protein
D EFER_2167 yegP; conserved hypothetical protein K09946 K09946; uncharacterized protein
D EFER_0764 conserved hypothetical protein K09954 K09954; uncharacterized protein
D EFER_0536 ybaP; conserved hypothetical protein K09973 K09973; uncharacterized protein
D EFER_3818 yijF; conserved hypothetical protein K09974 K09974; uncharacterized protein
D EFER_1325 ydjR; conserved hypothetical protein K09975 K09975; uncharacterized protein
D EFER_1615 ydbL; conserved hypothetical protein K09978 K09978; uncharacterized protein
D EFER_3117 yhbP; conserved hypothetical protein K09979 K09979; uncharacterized protein
D EFER_4234 yjfI; conserved hypothetical protein K09980 K09980; uncharacterized protein
D EFER_0424 yjhX; conserved hypothetical protein; KpLE2 phage-like element K09982 K09982; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 3, 2024