+E Transcription factors KO
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Transcription Factors - Sinorhizobium sojae
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D SJ05684_c11040 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D SJ05684_b59810 putative AraC family transcriptional K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D SJ05684_b51290 transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D SJ05684_c15800 Transcriptional regulator, AraC family K13652 K13652; AraC family transcriptional regulator
D SJ05684_b57180 Transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D SJ05684_b54310 Transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D SJ05684_c00690 ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D SJ05684_c35450 ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D SJ05684_b54790 putative LysR type regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SJ05684_c25970 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SJ05684_b43670 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SJ05684_c24690 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SJ05684_c05810 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SJ05684_c33130 Transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SJ05684_b58310 Transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SJ05684_b52230 LysR family transcriptional regulator YdcI K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D SJ05684_c03700 Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D SJ05684_b46820 Transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D SJ05684_a40830 Nodulation protein D (transcriptional regulator, LysR family) K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator
D SJ05684_a40200 Nodulation protein D (transcriptional regulator, LysR family) K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator
D SJ05684_a40300 Transcriptional regulator, LysR family K25882 syrM; LysR family transcriptional regulator, transcriptional activator of nodD3 and syrA
D SJ05684_b58790 RuBisCO operon transcriptional regulator CbbR K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D SJ05684_b58730 Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family) K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D SJ05684_c23280 putative transcription regulator protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D SJ05684_b46960 Deoxyribose operon repressor, DeoR family K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D SJ05684_c30980 Glycerol-3-phosphate regulon repressor, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D SJ05684_b43410 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SJ05684_c18900 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SJ05684_b44080 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SJ05684_c02860 Transcriptional regulator AglR, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SJ05684_c11220 glucose-resistance amylase regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SJ05684_c29100 putative Xylose regulator from LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SJ05684_b53610 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SJ05684_b46810 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SJ05684_c07330 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SJ05684_b56540 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SJ05684_b42570 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SJ05684_b58170 Maltose operon transcriptional repressor MalR, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SJ05684_b42500 Transcriptional (co)regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D SJ05684_b42200 putative LacI family HTH-type transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D SJ05684_b50250 Positive regulator of L-idonate catabolism K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D SJ05684_b50290 Transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D SJ05684_c18940 putative transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D SJ05684_b44590 Transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D SJ05684_b43860 Transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D SJ05684_b60370 Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D SJ05684_c27080 Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D SJ05684_c35100 putative transcriptional regulator of N-Acetylglucosamine utilization, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D SJ05684_b42970 putative biotin regulatory protein BioR (GntR family) K03710 K03710; GntR family transcriptional regulator
D SJ05684_c15260 Transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D SJ05684_c03780 Glycolate utilization operon transcriptional activator GlcC K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D SJ05684_b41530 putative D-glucarate or D-galactorate regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D SJ05684_b56970 putative D-glucarate or D-galactorate regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D SJ05684_b53500 Transcriptional regulator, GntR family K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D SJ05684_b59840 Transcriptional regulator, GntR family domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D SJ05684_b58470 Transcriptional regulator, GntR family K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D SJ05684_b41420 putative regulator PutR for proline utilization, GntR family K23466 tgnR; GntR family transcriptional regulator, trigonelline degradation regulator
C TetR/AcrR family
D SJ05684_c05720 HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D SJ05684_c01770 Transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D SJ05684_c25520 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) K09017 rutR; TetR/AcrR family transcriptional regulator
D SJ05684_c06900 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D SJ05684_c17720 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D SJ05684_c05360 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D SJ05684_c34780 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family K18135 nalD; TetR/AcrR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon
D SJ05684_b55100 Transcriptional regulator, TetR family K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D SJ05684_b51730 Transcriptional regulator YbiH, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D SJ05684_c36820 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SJ05684_c27040 PutR, transcriptional activator of PutA and PutP K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SJ05684_c06690 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SJ05684_b54630 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SJ05684_b47280 putative transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SJ05684_b47980 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SJ05684_c36280 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SJ05684_b43150 Leucine-responsive regulatory protein K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes
D SJ05684_b52870 Leucine-responsive regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D SJ05684_c21130 HTH-type transcriptional regulator zrp K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D SJ05684_c18200 Transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D SJ05684_c04260 Transcriptional regulator K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1
D SJ05684_c33080 Transcriptional activator protein SolR K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D SJ05684_b52510 Transcriptional activator protein LuxR K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids
D SJ05684_a41190 N-3-oxooctanoyl-L-homoserine lactone quorum-sensing transcriptional activator K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids
D SJ05684_c17440 Transcriptional activator protein LuxR K19733 sinR; LuxR family transcriptional regulator, quorum-sensing system regulator SinR
C MarR family
D SJ05684_c25760 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D SJ05684_c05850 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D SJ05684_b42820 Transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D SJ05684_b46500 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D SJ05684_b49150 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D SJ05684_c17310 Redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D SJ05684_c31060 Manganese uptake regulation protein MUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D SJ05684_c18590 Zinc uptake regulation protein ZUR K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D SJ05684_c35840 Iron-responsive regulator Irr K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D SJ05684_b51350 Transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D SJ05684_b44490 Negative regulator of allantoin and glyoxylate utilization operons K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D SJ05684_b43540 Pca regulon regulatory protein PcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D SJ05684_c00910 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D SJ05684_b48020 hypothetical protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D SJ05684_c19310 putative FNR family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D SJ05684_c25850 cAMP-binding protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D SJ05684_b59550 Crp family transcriptional regulatory protein K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB
C Rrf2 family
D SJ05684_c03260 Iron-responsive repressor RirA K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator
C ArsR family
D SJ05684_b58630 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D SJ05684_b43960 Transcriptional regulator, XRE family K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D SJ05684_c03080 putative transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D SJ05684_c09430 Biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D SJ05684_c12160 putative TRANSCRIPTION REGULATOR protein K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor
D SJ05684_a39590 Nitrogenase (molybdenum-iron)-specific transcriptional regulator NifA K02584 nifA; Nif-specific regulatory protein
D SJ05684_c29450 DNA-binding domain of ModE K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D SJ05684_c00860 Proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D SJ05684_c26910 Cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D SJ05684_a37070 Plasmid replication protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SJ05684_b43370 Plasmid replication protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SJ05684_b41380 Plasmid replication protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SJ05684_c33590 Chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SJ05684_c32860 CarD-like transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D SJ05684_c06250 transcriptional regulator K25884 mucR; MucR family transcriptional regulator, transcriptional regulator of exopolysaccharide biosynthesis
D SJ05684_c00100 Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D SJ05684_b47290 Phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D SJ05684_c10980 hypothetical protein K07733 alpA; prophage regulatory protein
D SJ05684_c05230 hypothetical protein K07735 algH; putative transcriptional regulator
D SJ05684_c20860 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D SJ05684_c17080 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D SJ05684_c08600 Ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D SJ05684_c22670 Cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
D SJ05684_c13640 Exopolysaccharide production negative regulator precursor K25885 exoR; exopolysaccharide production negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0