+E Transcription factors KO #

  Transcription Factors - Sinorhizobium sojae

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D SJ05684_c11040 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D SJ05684_b59810 putative AraC family transcriptional K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D SJ05684_b51290 transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D SJ05684_c15800 Transcriptional regulator, AraC family K13652 K13652; AraC family transcriptional regulator D SJ05684_b57180 Transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D SJ05684_b54310 Transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D SJ05684_c00690 ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D SJ05684_c35450 ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D SJ05684_b54790 putative LysR type regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SJ05684_c25970 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SJ05684_b43670 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SJ05684_c24690 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SJ05684_c05810 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SJ05684_c33130 Transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SJ05684_b58310 Transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SJ05684_b52230 LysR family transcriptional regulator YdcI K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D SJ05684_c03700 Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D SJ05684_b46820 Transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D SJ05684_a40830 Nodulation protein D (transcriptional regulator, LysR family) K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator D SJ05684_a40200 Nodulation protein D (transcriptional regulator, LysR family) K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator D SJ05684_a40300 Transcriptional regulator, LysR family K25882 syrM; LysR family transcriptional regulator, transcriptional activator of nodD3 and syrA D SJ05684_b58790 RuBisCO operon transcriptional regulator CbbR K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D SJ05684_b58730 Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family) K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D SJ05684_c23280 putative transcription regulator protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D SJ05684_b46960 Deoxyribose operon repressor, DeoR family K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D SJ05684_c30980 Glycerol-3-phosphate regulon repressor, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D SJ05684_b43410 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SJ05684_c18900 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SJ05684_b44080 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SJ05684_c02860 Transcriptional regulator AglR, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SJ05684_c11220 glucose-resistance amylase regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SJ05684_c29100 putative Xylose regulator from LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SJ05684_b53610 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SJ05684_b46810 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SJ05684_c07330 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SJ05684_b56540 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SJ05684_b42570 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SJ05684_b58170 Maltose operon transcriptional repressor MalR, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SJ05684_b42500 Transcriptional (co)regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D SJ05684_b42200 putative LacI family HTH-type transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D SJ05684_b50250 Positive regulator of L-idonate catabolism K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D SJ05684_b50290 Transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D SJ05684_c18940 putative transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D SJ05684_b44590 Transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D SJ05684_b43860 Transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D SJ05684_b60370 Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D SJ05684_c27080 Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D SJ05684_c35100 putative transcriptional regulator of N-Acetylglucosamine utilization, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D SJ05684_b42970 putative biotin regulatory protein BioR (GntR family) K03710 K03710; GntR family transcriptional regulator D SJ05684_c15260 Transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D SJ05684_c03780 Glycolate utilization operon transcriptional activator GlcC K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D SJ05684_b41530 putative D-glucarate or D-galactorate regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D SJ05684_b56970 putative D-glucarate or D-galactorate regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D SJ05684_b53500 Transcriptional regulator, GntR family K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D SJ05684_b59840 Transcriptional regulator, GntR family domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D SJ05684_b58470 Transcriptional regulator, GntR family K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator D SJ05684_b41420 putative regulator PutR for proline utilization, GntR family K23466 tgnR; GntR family transcriptional regulator, trigonelline degradation regulator C TetR/AcrR family D SJ05684_c05720 HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D SJ05684_c01770 Transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D SJ05684_c25520 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) K09017 rutR; TetR/AcrR family transcriptional regulator D SJ05684_c06900 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D SJ05684_c17720 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D SJ05684_c05360 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D SJ05684_c34780 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family K18135 nalD; TetR/AcrR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon D SJ05684_b55100 Transcriptional regulator, TetR family K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase D SJ05684_b51730 Transcriptional regulator YbiH, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D SJ05684_c36820 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SJ05684_c27040 PutR, transcriptional activator of PutA and PutP K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SJ05684_c06690 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SJ05684_b54630 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SJ05684_b47280 putative transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SJ05684_b47980 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SJ05684_c36280 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SJ05684_b43150 Leucine-responsive regulatory protein K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes D SJ05684_b52870 Leucine-responsive regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D SJ05684_c21130 HTH-type transcriptional regulator zrp K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D SJ05684_c18200 Transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D SJ05684_c04260 Transcriptional regulator K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 D SJ05684_c33080 Transcriptional activator protein SolR K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D SJ05684_b52510 Transcriptional activator protein LuxR K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids D SJ05684_a41190 N-3-oxooctanoyl-L-homoserine lactone quorum-sensing transcriptional activator K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids D SJ05684_c17440 Transcriptional activator protein LuxR K19733 sinR; LuxR family transcriptional regulator, quorum-sensing system regulator SinR C MarR family D SJ05684_c25760 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D SJ05684_c05850 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D SJ05684_b42820 Transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D SJ05684_b46500 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D SJ05684_b49150 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D SJ05684_c17310 Redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D SJ05684_c31060 Manganese uptake regulation protein MUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D SJ05684_c18590 Zinc uptake regulation protein ZUR K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D SJ05684_c35840 Iron-responsive regulator Irr K09826 irr; Fur family transcriptional regulator, iron response regulator C IclR family D SJ05684_b51350 Transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D SJ05684_b44490 Negative regulator of allantoin and glyoxylate utilization operons K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D SJ05684_b43540 Pca regulon regulatory protein PcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D SJ05684_c00910 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D SJ05684_b48020 hypothetical protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D SJ05684_c19310 putative FNR family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D SJ05684_c25850 cAMP-binding protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D SJ05684_b59550 Crp family transcriptional regulatory protein K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB C Rrf2 family D SJ05684_c03260 Iron-responsive repressor RirA K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator C ArsR family D SJ05684_b58630 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family D SJ05684_b43960 Transcriptional regulator, XRE family K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D SJ05684_c03080 putative transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family C Other families D SJ05684_c09430 Biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D SJ05684_c12160 putative TRANSCRIPTION REGULATOR protein K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor D SJ05684_a39590 Nitrogenase (molybdenum-iron)-specific transcriptional regulator NifA K02584 nifA; Nif-specific regulatory protein D SJ05684_c29450 DNA-binding domain of ModE K02019 modE; molybdate transport system regulatory protein B Ribbon-helix-helix C CopG family C Other families D SJ05684_c00860 Proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D SJ05684_c26910 Cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D SJ05684_a37070 Plasmid replication protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SJ05684_b43370 Plasmid replication protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SJ05684_b41380 Plasmid replication protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SJ05684_c33590 Chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SJ05684_c32860 CarD-like transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D SJ05684_c06250 transcriptional regulator K25884 mucR; MucR family transcriptional regulator, transcriptional regulator of exopolysaccharide biosynthesis D SJ05684_c00100 Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D SJ05684_b47290 Phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D SJ05684_c10980 hypothetical protein K07733 alpA; prophage regulatory protein D SJ05684_c05230 hypothetical protein K07735 algH; putative transcriptional regulator D SJ05684_c20860 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D SJ05684_c17080 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor D SJ05684_c08600 Ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D SJ05684_c22670 Cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ D SJ05684_c13640 Exopolysaccharide production negative regulator precursor K25885 exoR; exopolysaccharide production negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0