+F Repair protein KO #

  DNA Repair and Recombination Proteins - Edwardsiella piscicida C07-087

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D ETAC_10610 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D ETAC_12485 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E ETAC_13215 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E ETAC_01115 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ETAC_07775 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D ETAC_03135 Mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ETAC_05115 isopentenyl-diphosphate delta-isomerase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ETAC_10880 Putative Mut family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ETAC_00180 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D ETAC_10610 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D ETAC_12485 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E ETAC_13215 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E ETAC_02205 G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E ETAC_01115 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ETAC_00070 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E ETAC_00205 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E ETAC_12450 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E ETAC_07775 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E ETAC_07040 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E ETAC_05610 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E ETAC_00755 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E ETAC_14095 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E ETAC_05460 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E ETAC_16830 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E ETAC_15160 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E ETAC_12245 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E ETAC_09465 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E ETAC_00480 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ETAC_16830 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E ETAC_05460 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F ETAC_00725 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F ETAC_00730 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F ETAC_15280 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F ETAC_00145 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F ETAC_09825 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E ETAC_13830 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E ETAC_01520 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E ETAC_13885 DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E ETAC_05585 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E ETAC_13430 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E ETAC_04680 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E ETAC_03635 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E ETAC_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E ETAC_14775 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E ETAC_12685 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E ETAC_09940 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E ETAC_13600 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ETAC_04870 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E ETAC_02315 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E ETAC_07240 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E ETAC_05460 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E ETAC_00480 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ETAC_15155 ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein E ETAC_12955 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E ETAC_02060 retron adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E ETAC_15540 Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E ETAC_03430 recB; exonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E ETAC_03420 recC; exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E ETAC_03435 recD; exonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E ETAC_13775 recA; recombinase A K03553 recA; recombination protein RecA E ETAC_06760 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E ETAC_06765 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ETAC_06755 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E ETAC_11855 Crossover junction endodeoxyribonuclease rusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E ETAC_16285 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E ETAC_01605 primosomal replication protein N K02686 priB; primosomal replication protein N E ETAC_04855 Primosomal replication protein N'' K04067 priC; primosomal replication protein N'' E ETAC_05585 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E ETAC_05140 Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E ETAC_05145 Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E ETAC_13775 recA; recombinase A K03553 recA; recombination protein RecA E ETAC_02620 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E ETAC_00015 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF E ETAC_00130 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E ETAC_14095 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E ETAC_13150 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E ETAC_04880 Recombination protein RecR K06187 recR; recombination protein RecR E ETAC_13230 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E ETAC_05120 DNA recombination-dependent growth factor C K03554 rdgC; recombination associated protein RdgC E ETAC_11905 rdgC; recombination associated protein K03554 rdgC; recombination associated protein RdgC E ETAC_06760 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E ETAC_06765 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ETAC_06755 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E ETAC_10930 DNA or RNA helicase of superfamily II K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E ETAC_05140 Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E ETAC_05145 Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F ETAC_11030 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F ETAC_00020 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F ETAC_07285 DNA topoisomerase I subunit omega K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F ETAC_00765 transcriptional regulator HU subunit alpha K05787 hupA; DNA-binding protein HU-alpha F ETAC_04745 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F ETAC_14095 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F ETAC_13150 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F ETAC_04880 Recombination protein RecR K06187 recR; recombination protein RecR F ETAC_05460 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F ETAC_15025 global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F ETAC_08310 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F ETAC_10315 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F ETAC_05585 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F ETAC_00505 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F ETAC_15160 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F ETAC_12245 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F ETAC_07070 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS F ETAC_14280 global DNA-binding transcriptional dual regulator H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D ETAC_03810 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D ETAC_13775 recA; recombinase A K03553 recA; recombination protein RecA D ETAC_00970 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D ETAC_13230 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D ETAC_02935 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D ETAC_15155 ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein D ETAC_12955 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D ETAC_09850 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D ETAC_13770 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D ETAC_00340 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D ETAC_06040 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D ETAC_06845 DinG family ATP-dependent helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D ETAC_05595 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D ETAC_03135 Mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ETAC_05115 isopentenyl-diphosphate delta-isomerase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ETAC_10880 Putative Mut family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ETAC_00180 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D ETAC_11040 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D ETAC_11045 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024